2021-12-19T00:56:29,377 Created temporary directory: /tmp/pip-ephem-wheel-cache-kqqz9vfr 2021-12-19T00:56:29,383 Created temporary directory: /tmp/pip-req-tracker-z_fo9wsj 2021-12-19T00:56:29,384 Initialized build tracking at /tmp/pip-req-tracker-z_fo9wsj 2021-12-19T00:56:29,385 Created build tracker: /tmp/pip-req-tracker-z_fo9wsj 2021-12-19T00:56:29,385 Entered build tracker: /tmp/pip-req-tracker-z_fo9wsj 2021-12-19T00:56:29,386 Created temporary directory: /tmp/pip-wheel-jlc_pvjk 2021-12-19T00:56:29,442 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2021-12-19T00:56:29,446 2 location(s) to search for versions of kage-genotyper: 2021-12-19T00:56:29,446 * https://pypi.org/simple/kage-genotyper/ 2021-12-19T00:56:29,446 * https://www.piwheels.org/simple/kage-genotyper/ 2021-12-19T00:56:29,447 Fetching project page and analyzing links: https://pypi.org/simple/kage-genotyper/ 2021-12-19T00:56:29,449 Getting page https://pypi.org/simple/kage-genotyper/ 2021-12-19T00:56:29,453 Found index url https://pypi.org/simple 2021-12-19T00:56:29,798 Found link https://files.pythonhosted.org/packages/e7/66/016860668992a70bab9c872c5032fbc34e2f9ecc6936b95b4e9a0b0c812b/kage-genotyper-0.0.2.tar.gz#sha256=54ba5a094a15547344c88bd7063e22c9d932bbf7eacfbc8588a83d8b9b42dfc1 (from https://pypi.org/simple/kage-genotyper/), version: 0.0.2 2021-12-19T00:56:29,799 Found link https://files.pythonhosted.org/packages/80/ee/e08c95ccb0c401cfb2049e7271acdcb455196900f035e0700f6229d6c25d/kage-genotyper-0.0.3.tar.gz#sha256=727bf1ff9880dea8e8fe1a2aa5da4d0797fd5f64d75eda6a1ec53be5caa7d9f3 (from https://pypi.org/simple/kage-genotyper/), version: 0.0.3 2021-12-19T00:56:29,800 Found link https://files.pythonhosted.org/packages/47/5d/a155072db4e4e73f1a7b0f115f4641172458ef39411234990de2601e453a/kage-genotyper-0.0.4.tar.gz#sha256=d4316597d56b72c41623b03f06ed0fcacdfe0e301ad49d49fadcfd41e1f881f6 (from https://pypi.org/simple/kage-genotyper/), version: 0.0.4 2021-12-19T00:56:29,801 Found link https://files.pythonhosted.org/packages/9d/e0/92cb3c9de8704e94d12b1d13eee089389ba0b8cdeb5f7606e82357615039/kage-genotyper-0.0.5.tar.gz#sha256=78c0fdef5e5cf0ee401e5188dece6e297c3e20c3d72aa355c86426149d31819f (from https://pypi.org/simple/kage-genotyper/), version: 0.0.5 2021-12-19T00:56:29,802 Found link https://files.pythonhosted.org/packages/98/56/5a01b760b477d84f2e0d4284563b1a49d4c7af720ce16d8fe35273e43659/kage-genotyper-0.0.6.tar.gz#sha256=ddc00d681b1ff98043bf087216c44681f6dc8dbfad4d327a2775f3eec6937fae (from https://pypi.org/simple/kage-genotyper/), version: 0.0.6 2021-12-19T00:56:29,803 Found link https://files.pythonhosted.org/packages/62/2f/3fff47b02ebb52b577de8ff09e20d158d6796d577ab450cdee96f698915c/kage-genotyper-0.0.7.tar.gz#sha256=0a9471a1138b797df060c5aa9e7a8761e6282c5b0361432c8dcfbd168cbc15ce (from https://pypi.org/simple/kage-genotyper/), version: 0.0.7 2021-12-19T00:56:29,804 Found link https://files.pythonhosted.org/packages/52/b9/4e0cdf90c6fdee475a81d9eb47e8313937d68047a26314a6f4106b1f2f1d/kage-genotyper-0.0.8.tar.gz#sha256=11f2cd7f4adb9bb782dfaa359e8262b8f9616efc326e6d78f3608deabc81b0ea (from https://pypi.org/simple/kage-genotyper/), version: 0.0.8 2021-12-19T00:56:29,804 Found link https://files.pythonhosted.org/packages/37/a0/b87d59cc79cc5ecdd5517141b7c9e29953bfea3e9272b99840e1cd9b3d97/kage-genotyper-0.0.9.tar.gz#sha256=062ad455d207590ac2c60f823dd2868cdb52324dc4d06e960cd314b3a114b6d3 (from https://pypi.org/simple/kage-genotyper/), version: 0.0.9 2021-12-19T00:56:29,805 Found link https://files.pythonhosted.org/packages/a3/cc/ba453ad8b8cb30ad50f71f35eb171b5fd2419999465ec9ae2572fc1816bb/kage-genotyper-0.0.10.tar.gz#sha256=267e5ed35e9f10ff41b40e710c2d4becc564d6e2922048c1d3892f3b1a5c1780 (from https://pypi.org/simple/kage-genotyper/), version: 0.0.10 2021-12-19T00:56:29,806 Found link https://files.pythonhosted.org/packages/6a/54/8aba286e135663aade36ea3d9a597062aee31798db5622527b438994c2c2/kage-genotyper-0.0.12.tar.gz#sha256=05a080b9cd4f9250b5d7b0cffc7189491a019c8bc454499ef0b4cd6fe0de58f7 (from https://pypi.org/simple/kage-genotyper/), version: 0.0.12 2021-12-19T00:56:29,807 Found link https://files.pythonhosted.org/packages/17/30/f3311d5d12dd04c079c18f0003d3d2d71b5948ee3cd18a74c29890b64a1a/kage-genotyper-0.0.13.tar.gz#sha256=773d6150af358c965da32ae381fbbc05d0ff7183f3a2c74bd1b5d1eb2093375f (from https://pypi.org/simple/kage-genotyper/), version: 0.0.13 2021-12-19T00:56:29,808 Found link https://files.pythonhosted.org/packages/96/34/4fcd7e0720c9c302ff886c6a92fed693424313842c59864d7c85316dd688/kage-genotyper-0.0.14.tar.gz#sha256=e14a18186eedc478c0e0cd60a7d6a5c738254b83645e670d228ec75db370542b (from https://pypi.org/simple/kage-genotyper/), version: 0.0.14 2021-12-19T00:56:29,809 Found link https://files.pythonhosted.org/packages/f3/8b/e0cc70a7601f4c4104eed8edcfba5801143448954baa7aa5e8fdd052eee6/kage-genotyper-0.0.15.tar.gz#sha256=5fe95318bdec1573d9f50a68522efa6fd36d1d2040197d87e1e193d93d9f616e (from https://pypi.org/simple/kage-genotyper/), version: 0.0.15 2021-12-19T00:56:29,810 Found link https://files.pythonhosted.org/packages/e6/d1/5686f2e34b84a0800c2f8ad566d16ae77ce5d0f42348ffbf48e62c360fe2/kage-genotyper-0.0.16.tar.gz#sha256=a2beccbc9effcb710456042d6191ab3960f527f4147344c7eb4795ffd6a76dfe (from https://pypi.org/simple/kage-genotyper/), version: 0.0.16 2021-12-19T00:56:29,811 Found link https://files.pythonhosted.org/packages/38/fb/7fc95292837f188450095b39cba3774e469cd086c1fbc646a67168fff033/kage-genotyper-0.0.17.tar.gz#sha256=9b247512674448b6559994c05b151d22fb5f9a5d189980d296f03b4319b11bf9 (from https://pypi.org/simple/kage-genotyper/), version: 0.0.17 2021-12-19T00:56:29,812 Found link https://files.pythonhosted.org/packages/11/d9/ac03f00ab30367578bb4b736502f5fe689b0eaa939bcf94d918c265bc66e/kage-genotyper-0.0.18.tar.gz#sha256=d068844475a22bc1b83a2a7e0887963c503b486dad5259c40d35032f8aace0c4 (from https://pypi.org/simple/kage-genotyper/), version: 0.0.18 2021-12-19T00:56:29,812 Fetching project page and analyzing links: https://www.piwheels.org/simple/kage-genotyper/ 2021-12-19T00:56:29,813 Getting page https://www.piwheels.org/simple/kage-genotyper/ 2021-12-19T00:56:29,816 Found index url https://www.piwheels.org/simple 2021-12-19T00:56:30,071 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.10-py3-none-any.whl#sha256=f0de4fec6f21e6c0e0fe926b55af6a9032fb8af3ff0ac0a4e462c49fa9fefaf5 (from https://www.piwheels.org/simple/kage-genotyper/) 2021-12-19T00:56:30,071 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.12-py3-none-any.whl#sha256=7d3956620409c7b4f5acbfb7ba2f2c5b1ac4fa3761bc803d9500f4e627943de5 (from https://www.piwheels.org/simple/kage-genotyper/) 2021-12-19T00:56:30,072 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.13-py3-none-any.whl#sha256=a256a7d8c6fbb49d6029a56d01e7608d04434d6016d8851d750b3c0a946fe0d4 (from https://www.piwheels.org/simple/kage-genotyper/) 2021-12-19T00:56:30,073 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.3-py3-none-any.whl#sha256=7d52b7bdc251d8fa41b2627126137f9c9d6b34e76dcc9d8c85de8d0d42f6bf33 (from https://www.piwheels.org/simple/kage-genotyper/) 2021-12-19T00:56:30,073 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.4-py3-none-any.whl#sha256=a279c71d67ea133f1cf0818eb5c559c97e5f2460cc45aba044dd17abf30d6446 (from https://www.piwheels.org/simple/kage-genotyper/) 2021-12-19T00:56:30,074 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.5-py3-none-any.whl#sha256=dbca21ae8964d1bf38306442e517c6b17b688a29519f7675082be82135c4c98f (from https://www.piwheels.org/simple/kage-genotyper/) 2021-12-19T00:56:30,074 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.6-py3-none-any.whl#sha256=7f26289022b49cd9611615aa9f542bea798b0827f5df45e23c5d65148fb2f169 (from https://www.piwheels.org/simple/kage-genotyper/) 2021-12-19T00:56:30,075 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.7-py3-none-any.whl#sha256=6c45550e73562e3543e4dedf63f5e42897169f62a701603f2c4a460ac1e0b5fa (from https://www.piwheels.org/simple/kage-genotyper/) 2021-12-19T00:56:30,075 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.8-py3-none-any.whl#sha256=17c38eb9469806ae1d16028b61450a754b7a2e9607b63cf4cb2c1bc4cd19f562 (from https://www.piwheels.org/simple/kage-genotyper/) 2021-12-19T00:56:30,076 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.9-py3-none-any.whl#sha256=6728e2c34e7473f450ba0dc3b680189ec324937e583ce456df04d4352047531b (from https://www.piwheels.org/simple/kage-genotyper/) 2021-12-19T00:56:30,111 Given no hashes to check 1 links for project 'kage-genotyper': discarding no candidates 2021-12-19T00:56:30,144 Collecting kage-genotyper==0.0.14 2021-12-19T00:56:30,147 Created temporary directory: /tmp/pip-unpack-ljl18ill 2021-12-19T00:56:30,371 Downloading kage-genotyper-0.0.14.tar.gz (31 kB) 2021-12-19T00:56:30,579 Added kage-genotyper==0.0.14 from https://files.pythonhosted.org/packages/96/34/4fcd7e0720c9c302ff886c6a92fed693424313842c59864d7c85316dd688/kage-genotyper-0.0.14.tar.gz#sha256=e14a18186eedc478c0e0cd60a7d6a5c738254b83645e670d228ec75db370542b to build tracker '/tmp/pip-req-tracker-z_fo9wsj' 2021-12-19T00:56:30,581 Running setup.py (path:/tmp/pip-wheel-jlc_pvjk/kage-genotyper_9326aad41b864eaf94f214260ed27ae2/setup.py) egg_info for package kage-genotyper 2021-12-19T00:56:30,583 Created temporary directory: /tmp/pip-pip-egg-info-g39beuo5 2021-12-19T00:56:30,584 Running command python setup.py egg_info 2021-12-19T00:56:32,521 running egg_info 2021-12-19T00:56:32,527 creating /tmp/pip-pip-egg-info-g39beuo5/kage_genotyper.egg-info 2021-12-19T00:56:32,529 writing dependency_links to /tmp/pip-pip-egg-info-g39beuo5/kage_genotyper.egg-info/dependency_links.txt 2021-12-19T00:56:32,533 writing top-level names to /tmp/pip-pip-egg-info-g39beuo5/kage_genotyper.egg-info/top_level.txt 2021-12-19T00:56:32,535 writing requirements to /tmp/pip-pip-egg-info-g39beuo5/kage_genotyper.egg-info/requires.txt 2021-12-19T00:56:32,538 writing entry points to /tmp/pip-pip-egg-info-g39beuo5/kage_genotyper.egg-info/entry_points.txt 2021-12-19T00:56:32,540 writing /tmp/pip-pip-egg-info-g39beuo5/kage_genotyper.egg-info/PKG-INFO 2021-12-19T00:56:32,547 writing manifest file '/tmp/pip-pip-egg-info-g39beuo5/kage_genotyper.egg-info/SOURCES.txt' 2021-12-19T00:56:32,900 reading manifest file '/tmp/pip-pip-egg-info-g39beuo5/kage_genotyper.egg-info/SOURCES.txt' 2021-12-19T00:56:32,909 writing manifest file '/tmp/pip-pip-egg-info-g39beuo5/kage_genotyper.egg-info/SOURCES.txt' 2021-12-19T00:56:33,043 Source in /tmp/pip-wheel-jlc_pvjk/kage-genotyper_9326aad41b864eaf94f214260ed27ae2 has version 0.0.14, which satisfies requirement kage-genotyper==0.0.14 from https://files.pythonhosted.org/packages/96/34/4fcd7e0720c9c302ff886c6a92fed693424313842c59864d7c85316dd688/kage-genotyper-0.0.14.tar.gz#sha256=e14a18186eedc478c0e0cd60a7d6a5c738254b83645e670d228ec75db370542b 2021-12-19T00:56:33,045 Removed kage-genotyper==0.0.14 from https://files.pythonhosted.org/packages/96/34/4fcd7e0720c9c302ff886c6a92fed693424313842c59864d7c85316dd688/kage-genotyper-0.0.14.tar.gz#sha256=e14a18186eedc478c0e0cd60a7d6a5c738254b83645e670d228ec75db370542b from build tracker '/tmp/pip-req-tracker-z_fo9wsj' 2021-12-19T00:56:33,052 Created temporary directory: /tmp/pip-unpack-c6lb0fk9 2021-12-19T00:56:33,054 Building wheels for collected packages: kage-genotyper 2021-12-19T00:56:33,062 Created temporary directory: /tmp/pip-wheel-wzrbtsyo 2021-12-19T00:56:33,063 Building wheel for kage-genotyper (setup.py): started 2021-12-19T00:56:33,064 Destination directory: /tmp/pip-wheel-wzrbtsyo 2021-12-19T00:56:33,065 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-jlc_pvjk/kage-genotyper_9326aad41b864eaf94f214260ed27ae2/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-jlc_pvjk/kage-genotyper_9326aad41b864eaf94f214260ed27ae2/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-wzrbtsyo 2021-12-19T00:56:34,997 running bdist_wheel 2021-12-19T00:56:35,011 running build 2021-12-19T00:56:35,012 running build_py 2021-12-19T00:56:35,351 creating build 2021-12-19T00:56:35,351 creating build/lib 2021-12-19T00:56:35,353 creating build/lib/kage 2021-12-19T00:56:35,355 copying kage/genotyper.py -> build/lib/kage 2021-12-19T00:56:35,361 copying kage/tricky_variants.py -> build/lib/kage 2021-12-19T00:56:35,365 copying kage/numpy_genotyper.py -> build/lib/kage 2021-12-19T00:56:35,370 copying kage/util.py -> build/lib/kage 2021-12-19T00:56:35,375 copying kage/combination_model_genotyper.py -> build/lib/kage 2021-12-19T00:56:35,381 copying kage/reads.py -> build/lib/kage 2021-12-19T00:56:35,387 copying kage/reference_kmers.py -> build/lib/kage 2021-12-19T00:56:35,393 copying kage/helper_index.py -> build/lib/kage 2021-12-19T00:56:35,398 copying kage/node_counts.py -> build/lib/kage 2021-12-19T00:56:35,402 copying kage/combomodel.py -> build/lib/kage 2021-12-19T00:56:35,407 copying kage/node_count_model.py -> build/lib/kage 2021-12-19T00:56:35,412 copying kage/models.py -> build/lib/kage 2021-12-19T00:56:35,416 copying kage/__init__.py -> build/lib/kage 2021-12-19T00:56:35,420 copying kage/helper_index_using_duplicate_counts.py -> build/lib/kage 2021-12-19T00:56:35,423 copying kage/negative_binomial_model.py -> build/lib/kage 2021-12-19T00:56:35,427 copying kage/variant_kmer_analyser.py -> build/lib/kage 2021-12-19T00:56:35,431 copying kage/joint_distribution.py -> build/lib/kage 2021-12-19T00:56:35,435 copying kage/command_line_interface.py -> build/lib/kage 2021-12-19T00:56:35,445 copying kage/analysis.py -> build/lib/kage 2021-12-19T00:56:35,452 copying kage/simulation.py -> build/lib/kage 2021-12-19T00:56:35,458 copying kage/variant_filtering.py -> build/lib/kage 2021-12-19T00:56:35,477 installing to build/bdist.linux-armv7l/wheel 2021-12-19T00:56:35,478 running install 2021-12-19T00:56:35,480 running install_lib 2021-12-19T00:56:35,487 creating build/bdist.linux-armv7l 2021-12-19T00:56:35,488 creating build/bdist.linux-armv7l/wheel 2021-12-19T00:56:35,492 creating build/bdist.linux-armv7l/wheel/kage 2021-12-19T00:56:35,494 copying build/lib/kage/genotyper.py -> build/bdist.linux-armv7l/wheel/kage 2021-12-19T00:56:35,500 copying build/lib/kage/tricky_variants.py -> build/bdist.linux-armv7l/wheel/kage 2021-12-19T00:56:35,504 copying build/lib/kage/numpy_genotyper.py -> build/bdist.linux-armv7l/wheel/kage 2021-12-19T00:56:35,510 copying build/lib/kage/util.py -> build/bdist.linux-armv7l/wheel/kage 2021-12-19T00:56:35,514 copying build/lib/kage/combination_model_genotyper.py -> build/bdist.linux-armv7l/wheel/kage 2021-12-19T00:56:35,520 copying build/lib/kage/reads.py -> build/bdist.linux-armv7l/wheel/kage 2021-12-19T00:56:35,527 copying build/lib/kage/reference_kmers.py -> build/bdist.linux-armv7l/wheel/kage 2021-12-19T00:56:35,532 copying build/lib/kage/helper_index.py -> build/bdist.linux-armv7l/wheel/kage 2021-12-19T00:56:35,539 copying build/lib/kage/node_counts.py -> build/bdist.linux-armv7l/wheel/kage 2021-12-19T00:56:35,544 copying build/lib/kage/combomodel.py -> build/bdist.linux-armv7l/wheel/kage 2021-12-19T00:56:35,551 copying build/lib/kage/node_count_model.py -> build/bdist.linux-armv7l/wheel/kage 2021-12-19T00:56:35,558 copying build/lib/kage/models.py -> build/bdist.linux-armv7l/wheel/kage 2021-12-19T00:56:35,564 copying build/lib/kage/__init__.py -> build/bdist.linux-armv7l/wheel/kage 2021-12-19T00:56:35,569 copying build/lib/kage/helper_index_using_duplicate_counts.py -> build/bdist.linux-armv7l/wheel/kage 2021-12-19T00:56:35,575 copying build/lib/kage/negative_binomial_model.py -> build/bdist.linux-armv7l/wheel/kage 2021-12-19T00:56:35,580 copying build/lib/kage/variant_kmer_analyser.py -> build/bdist.linux-armv7l/wheel/kage 2021-12-19T00:56:35,584 copying build/lib/kage/joint_distribution.py -> build/bdist.linux-armv7l/wheel/kage 2021-12-19T00:56:35,588 copying build/lib/kage/command_line_interface.py -> build/bdist.linux-armv7l/wheel/kage 2021-12-19T00:56:35,595 copying build/lib/kage/analysis.py -> build/bdist.linux-armv7l/wheel/kage 2021-12-19T00:56:35,603 copying build/lib/kage/simulation.py -> build/bdist.linux-armv7l/wheel/kage 2021-12-19T00:56:35,609 copying build/lib/kage/variant_filtering.py -> build/bdist.linux-armv7l/wheel/kage 2021-12-19T00:56:35,614 running install_egg_info 2021-12-19T00:56:35,660 running egg_info 2021-12-19T00:56:35,662 writing requirements to kage_genotyper.egg-info/requires.txt 2021-12-19T00:56:35,665 writing entry points to kage_genotyper.egg-info/entry_points.txt 2021-12-19T00:56:35,667 writing dependency_links to kage_genotyper.egg-info/dependency_links.txt 2021-12-19T00:56:35,669 writing kage_genotyper.egg-info/PKG-INFO 2021-12-19T00:56:35,673 writing top-level names to kage_genotyper.egg-info/top_level.txt 2021-12-19T00:56:35,684 reading manifest file 'kage_genotyper.egg-info/SOURCES.txt' 2021-12-19T00:56:35,696 writing manifest file 'kage_genotyper.egg-info/SOURCES.txt' 2021-12-19T00:56:35,700 Copying kage_genotyper.egg-info to build/bdist.linux-armv7l/wheel/kage_genotyper-0.0.14-py3.5.egg-info 2021-12-19T00:56:35,732 running install_scripts 2021-12-19T00:56:35,950 creating build/bdist.linux-armv7l/wheel/kage_genotyper-0.0.14.dist-info/WHEEL 2021-12-19T00:56:36,233 Building wheel for kage-genotyper (setup.py): finished with status 'done' 2021-12-19T00:56:36,238 Created wheel for kage-genotyper: filename=kage_genotyper-0.0.14-py3-none-any.whl size=39625 sha256=a08f7b62017bb01e15c21b4752a1c020e022b2d1c97e4f473c1b4e1486c786a1 2021-12-19T00:56:36,239 Stored in directory: /tmp/pip-ephem-wheel-cache-kqqz9vfr/wheels/de/e3/30/10bb23ad100ed36e56142461ba79d72f4e8940fc353a348219 2021-12-19T00:56:36,258 Successfully built kage-genotyper 2021-12-19T00:56:36,269 Removed build tracker: '/tmp/pip-req-tracker-z_fo9wsj'