2021-12-19T05:11:04,503 Created temporary directory: /tmp/pip-ephem-wheel-cache-ge1jdgqy
2021-12-19T05:11:04,509 Created temporary directory: /tmp/pip-req-tracker-lqg501j_
2021-12-19T05:11:04,510 Initialized build tracking at /tmp/pip-req-tracker-lqg501j_
2021-12-19T05:11:04,510 Created build tracker: /tmp/pip-req-tracker-lqg501j_
2021-12-19T05:11:04,511 Entered build tracker: /tmp/pip-req-tracker-lqg501j_
2021-12-19T05:11:04,512 Created temporary directory: /tmp/pip-wheel-oukfl4kj
2021-12-19T05:11:04,580 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-12-19T05:11:04,583 2 location(s) to search for versions of pele-platform:
2021-12-19T05:11:04,583 * https://pypi.org/simple/pele-platform/
2021-12-19T05:11:04,583 * https://www.piwheels.org/simple/pele-platform/
2021-12-19T05:11:04,584 Fetching project page and analyzing links: https://pypi.org/simple/pele-platform/
2021-12-19T05:11:04,586 Getting page https://pypi.org/simple/pele-platform/
2021-12-19T05:11:04,591 Found index url https://pypi.org/simple
2021-12-19T05:11:04,957   Found link https://files.pythonhosted.org/packages/f0/ac/9497572d7da4e501c8dddc3be3fa338744dbc27b67eb09275b8375fae2fd/pele_platform-1.0.0.1.tar.gz#sha256=e3c8bde654fe3d249714c4ddb1d3471944752f6840a6bcf4b399a3466931b838 (from https://pypi.org/simple/pele-platform/), version: 1.0.0.1
2021-12-19T05:11:04,958   Found link https://files.pythonhosted.org/packages/79/a0/d1b4b9269c3fe9dd2edc878a2dec9d3f4e7701cc932272169f44a025c2a9/pele_platform-1.0.0.2.tar.gz#sha256=919f487c943e6e71a8d82e56dac3051605ffdc6a680d168b5233cea95c9e4701 (from https://pypi.org/simple/pele-platform/), version: 1.0.0.2
2021-12-19T05:11:04,959   Found link https://files.pythonhosted.org/packages/a3/56/3cc9eb3b0ecf0943c4f4eb5b0729cd54906290f84dc4cfb230ad69ce99c6/pele_platform-1.0.0.3.tar.gz#sha256=ea4f3df0aeb65812e72eb9b24605146a7afeeb7f89ce7f769058c2e894654239 (from https://pypi.org/simple/pele-platform/), version: 1.0.0.3
2021-12-19T05:11:04,960   Found link https://files.pythonhosted.org/packages/d0/6d/1ac79163749b10c7f694dde1db24063d4e2f57bcf365db1b8cfa1b9f7f57/pele_platform-1.1.0.tar.gz#sha256=25a644fc27c0c364bfece9addd278a74a5a7ea5f4ab40b31fa8cd961e7485a65 (from https://pypi.org/simple/pele-platform/), version: 1.1.0
2021-12-19T05:11:04,961   Found link https://files.pythonhosted.org/packages/fd/15/306ea35b1d4be507caf1613d05fc16c076f070c2a16e6283a331695fcb5e/pele_platform-1.2.0.tar.gz#sha256=2967a976bafc47884ca49864ca87d40d87aa50c2fc57900c1f0517e84e789153 (from https://pypi.org/simple/pele-platform/), version: 1.2.0
2021-12-19T05:11:04,962   Found link https://files.pythonhosted.org/packages/74/98/cf2442f668f8ad6be1838c3ce7b87a409eee7448a1d7d033862ad0bda36c/pele_platform-1.2.1.tar.gz#sha256=5d30d563960934362ac79eb7a24b8f4b831076dba29bbb498901a0b0a1dca367 (from https://pypi.org/simple/pele-platform/), version: 1.2.1
2021-12-19T05:11:04,963   Found link https://files.pythonhosted.org/packages/1a/78/29b2eb73308b595668a9c22abd93ac88f82c49ebc6b004f332a774166391/pele_platform-1.2.2.tar.gz#sha256=00f579740db5455cea04c82e86b87c8f53045496ba61d9f4e96436f1d0cdfb08 (from https://pypi.org/simple/pele-platform/), version: 1.2.2
2021-12-19T05:11:04,964   Found link https://files.pythonhosted.org/packages/fb/6b/85f262d33a080377ea5202d5779c9402c23aaefc4e1b04bb94d9432aad42/pele_platform-1.2.3.tar.gz#sha256=18713b6811d7689accb54dde5429aa5225dcb8e520164fd7b4037453c63f74d9 (from https://pypi.org/simple/pele-platform/), version: 1.2.3
2021-12-19T05:11:04,965   Found link https://files.pythonhosted.org/packages/d5/15/707e6b89f0ee479d173ef2fe6a41af1ff9d91dd86e45067da5cee56761d9/pele_platform-1.3.0.tar.gz#sha256=fb7fb5dd59f9e3a76d371be6aa0b013209752c464862bf944de6b2a2903424a9 (from https://pypi.org/simple/pele-platform/), version: 1.3.0
2021-12-19T05:11:04,966   Found link https://files.pythonhosted.org/packages/7c/b0/4fda3001d5f13010bc2005e335f799f24d2204fc700a847e28091b57fabb/pele_platform-1.3.1.tar.gz#sha256=c6c0ac764ae30ce8a0650cdf0fc686fd733cb6b11fc15e6cccd5659166be3b33 (from https://pypi.org/simple/pele-platform/), version: 1.3.1
2021-12-19T05:11:04,967   Found link https://files.pythonhosted.org/packages/34/21/2f68d91d200432e0feb4662f6ba5538817335d86df60688e3a6f050dd21b/pele_platform-1.3.2.tar.gz#sha256=14c6e236347a1101f5de04bc25a32f302904bdb46326fb151c14e930a28d7a48 (from https://pypi.org/simple/pele-platform/), version: 1.3.2
2021-12-19T05:11:04,968   Found link https://files.pythonhosted.org/packages/63/a6/ad0bc781b4089093fd8aca4d75d237e0c0ae9d1f6b7e4b86a733f5a91b10/pele_platform-1.3.3.tar.gz#sha256=9e9e49d359bde42485b1c2d23b8a80c3de43064a672c260d18b9f10b55ee666e (from https://pypi.org/simple/pele-platform/), version: 1.3.3
2021-12-19T05:11:04,969   Found link https://files.pythonhosted.org/packages/e7/6a/4d8e75e0dbff74b22c76f4640a72798acfe6f55e35dcf0e9080dc8f36857/pele_platform-1.3.4.tar.gz#sha256=b8f7a2caac267df0381e8a3d73ddfeaec60cccc22336aa76178dbf3d2b2e880b (from https://pypi.org/simple/pele-platform/), version: 1.3.4
2021-12-19T05:11:04,970   Found link https://files.pythonhosted.org/packages/d2/7d/8f6c7c977288ed554723c003a885c118889c3bf76ac343961a84d330f85e/pele_platform-1.4.0.tar.gz#sha256=0190af77e0e24482742b634d120ac9b52135716bbbc93929bf688313f63e4a59 (from https://pypi.org/simple/pele-platform/), version: 1.4.0
2021-12-19T05:11:04,970   Found link https://files.pythonhosted.org/packages/ed/11/ff7cdcb7a17869082a94fc4c066a8bc6407a07f7c542c1dbc4919b1e091a/pele_platform-1.4.1.tar.gz#sha256=2f5327616aeff5be40d54b2771fd43b8cdb75086944c11800339bd44e0866c01 (from https://pypi.org/simple/pele-platform/), version: 1.4.1
2021-12-19T05:11:04,971   Found link https://files.pythonhosted.org/packages/4b/4f/fec23d74e8b1474fe25234fd34972a427234307dc9f7908f916e50036d81/pele_platform-1.4.2.tar.gz#sha256=c1092fb5c5cdb38736f621c434ff3112ea1cd1abc94d0bfe03ea7044b6e06612 (from https://pypi.org/simple/pele-platform/), version: 1.4.2
2021-12-19T05:11:04,972   Found link https://files.pythonhosted.org/packages/7a/b3/8eeb8c773a4fbf6561a929b8bab563f31384a0512a4708b4d0249ebc8c24/pele_platform-1.4.3.tar.gz#sha256=e491ac06c05301a846084e07ab709abf4b0507768710256443b6523b25339c40 (from https://pypi.org/simple/pele-platform/), version: 1.4.3
2021-12-19T05:11:04,973   Found link https://files.pythonhosted.org/packages/92/57/ff446766add00995f3fa0446f9c32ad52b759bab05d3f41e5ee51a8e76a8/pele_platform-1.4.4.tar.gz#sha256=eca94d45d76664106cff9915781740932635878b203b430d62f7aeb252ce59c7 (from https://pypi.org/simple/pele-platform/), version: 1.4.4
2021-12-19T05:11:04,974   Found link https://files.pythonhosted.org/packages/6d/f3/5ad1c5dab958edc8ecfb75883f8ac760308e570f3a0929104ba01a223f02/pele_platform-1.5.0.tar.gz#sha256=0b7eed2abd70f20caadcf9e9c8642cfc51d55d66ab114e42f0d425bfb6603323 (from https://pypi.org/simple/pele-platform/), version: 1.5.0
2021-12-19T05:11:04,975   Found link https://files.pythonhosted.org/packages/1c/b0/44dcc5184b218a7481babe8cd5738129741e29422e226308a583a3dd5629/pele_platform-1.5.1.tar.gz#sha256=9e138403c8fb65450d9841db279140f046a8325791af9983e202c9002bf44b93 (from https://pypi.org/simple/pele-platform/), version: 1.5.1
2021-12-19T05:11:04,976   Found link https://files.pythonhosted.org/packages/05/85/4cfdad270ebf569727204cbc9de66f22ef802d5079846f2631e1e6a11059/pele_platform-1.6.0b1.tar.gz#sha256=a7b5e566ec00598a1991d44c8748267104e5a123f462365a584632c94b36a7bf (from https://pypi.org/simple/pele-platform/), version: 1.6.0b1
2021-12-19T05:11:04,977   Found link https://files.pythonhosted.org/packages/c0/d6/f49f102325943cd3a82086e4740dfabd416c278d21ef9f3097fc1bb0ba7a/pele_platform-1.6.0b2.tar.gz#sha256=6bf2be383e50f6654f49f87e44dfc548f2aa1f5f002b25089ae2089ab0a92654 (from https://pypi.org/simple/pele-platform/), version: 1.6.0b2
2021-12-19T05:11:04,978   Found link https://files.pythonhosted.org/packages/f7/16/8db67212a622716e71ea8a9664e4da6207ae136369f2d1b3b802ca39baee/pele_platform-1.6.0b3.tar.gz#sha256=916a0f278c53e5eec786008a498654481c2e76b90b4385e75398872fd28b1f6e (from https://pypi.org/simple/pele-platform/), version: 1.6.0b3
2021-12-19T05:11:04,979   Found link https://files.pythonhosted.org/packages/f3/46/ecebcaed96148f710c2aa716f1a4862033073dfe8c1da1c7283d32b766b4/pele_platform-1.6.0b4.tar.gz#sha256=1e6cdaab94470fa0de99010c2e51ed94e1634b14c9a53206b6f33e838616b361 (from https://pypi.org/simple/pele-platform/), version: 1.6.0b4
2021-12-19T05:11:04,980   Found link https://files.pythonhosted.org/packages/7a/03/3f391e98e553a1cea233c87fe3d33171be5b3851fbf37869ccdfebca58c4/pele_platform-1.6.0b5.tar.gz#sha256=9e98fe723a6e9b2d67e7c95441f23bc98f550d4d824a47614981b39643e4781d (from https://pypi.org/simple/pele-platform/), version: 1.6.0b5
2021-12-19T05:11:04,981   Found link https://files.pythonhosted.org/packages/e1/28/b31c1b1b3daf0bc65f6c3d09cad23ec355868feb94787f0adc4407c60364/pele_platform-1.6.0b6.tar.gz#sha256=63327ad61bcbfa4e69c138e5ec38621194b929c5e271b21d01c359961fd8e805 (from https://pypi.org/simple/pele-platform/), version: 1.6.0b6
2021-12-19T05:11:04,982   Found link https://files.pythonhosted.org/packages/3c/b6/8ebb9f0d293a32db481b1bd6e620d5b04e73b2bf516bcedbd22033f16016/pele_platform-1.6.0b7.tar.gz#sha256=e5e3a57d5eb74bf3f664714017549f773f71f325da381666f8f872c38c12d06e (from https://pypi.org/simple/pele-platform/), version: 1.6.0b7
2021-12-19T05:11:04,983   Found link https://files.pythonhosted.org/packages/bf/83/ff52f07ec4bc23a134b0fcb5ea792d20ee925939a73bc0a2cc867e47378c/pele_platform-1.6.0rc1.tar.gz#sha256=34a396a464e091c199e16e4d7fdce545eb8e1acde49096d61f5c5f04a220b1d7 (from https://pypi.org/simple/pele-platform/), version: 1.6.0rc1
2021-12-19T05:11:04,984   Found link https://files.pythonhosted.org/packages/43/3a/60b79f3dae3de9b5568620f8d2bf4fc3d2a80a2bf055d2699f962b5cdd27/pele_platform-1.6.0rc2.tar.gz#sha256=1056394184b738486172547f015fa65ca7830cec5605bb99c86741908b3db07a (from https://pypi.org/simple/pele-platform/), version: 1.6.0rc2
2021-12-19T05:11:04,985   Found link https://files.pythonhosted.org/packages/27/be/a3c190f0a24fc9e18c3cd0ba2a328e597ee96e6722081e796f43afd3b706/pele_platform-1.6.0.tar.gz#sha256=648184346e6e4b63b1f13885f806143a875b6d5da59e53a5edb3b4e421bd1f90 (from https://pypi.org/simple/pele-platform/), version: 1.6.0
2021-12-19T05:11:04,986   Found link https://files.pythonhosted.org/packages/af/84/f0a7c07cdbfbdcd341b42a0be1496e1bd61f5c6c163980ad5c67cb0fa5ea/pele_platform-1.6.1.tar.gz#sha256=0ca1ca7bad3f7907b0d55efc35c3f376004da60586f488b7358f66be90a8ba3b (from https://pypi.org/simple/pele-platform/), version: 1.6.1
2021-12-19T05:11:04,987   Found link https://files.pythonhosted.org/packages/93/57/b35e69b71f975bb64d4221e94945a7f30e39d83b16df0eb453914ba800ce/pele_platform-1.6.2.tar.gz#sha256=25edaf5664128f5ef460dbc67731fbf8c01528303bd5ba84ae93bc7c11c52ab7 (from https://pypi.org/simple/pele-platform/), version: 1.6.2
2021-12-19T05:11:04,987 Fetching project page and analyzing links: https://www.piwheels.org/simple/pele-platform/
2021-12-19T05:11:04,988 Getting page https://www.piwheels.org/simple/pele-platform/
2021-12-19T05:11:04,991 Found index url https://www.piwheels.org/simple
2021-12-19T05:11:05,317   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.1-cp34-cp34m-linux_armv6l.whl#sha256=cfa754261c485621955deb1b1b977ab76c3b11decc3791d2046182c538a53265 (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,318   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.1-cp34-cp34m-linux_armv7l.whl#sha256=cfa754261c485621955deb1b1b977ab76c3b11decc3791d2046182c538a53265 (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,319   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.2-cp34-cp34m-linux_armv6l.whl#sha256=8f9f46188cfb1375d1376a62f3cb8fc59775700ecd1d3268ea0decb9de1f2768 (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,319   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.2-cp34-cp34m-linux_armv7l.whl#sha256=8f9f46188cfb1375d1376a62f3cb8fc59775700ecd1d3268ea0decb9de1f2768 (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,320   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.2-cp35-cp35m-linux_armv6l.whl#sha256=c1794338b7c93baf55885b2f40257cdf706bdd2f6fc21d38cbf1f865d162899c (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,321   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.2-cp35-cp35m-linux_armv7l.whl#sha256=c1794338b7c93baf55885b2f40257cdf706bdd2f6fc21d38cbf1f865d162899c (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,321   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.2-cp37-cp37m-linux_armv6l.whl#sha256=52970c8a6e59fe092e264cde9de8c639a778852faaecb06fb6c8b6146b06136d (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,322   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.2-cp37-cp37m-linux_armv7l.whl#sha256=52970c8a6e59fe092e264cde9de8c639a778852faaecb06fb6c8b6146b06136d (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,323   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.2-cp39-cp39-linux_armv6l.whl#sha256=eb926ca03cf91a68265839e92d4b00873d99a215e9c99afc7807424ff391cbe5 (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,323   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.2-cp39-cp39-linux_armv7l.whl#sha256=eb926ca03cf91a68265839e92d4b00873d99a215e9c99afc7807424ff391cbe5 (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,324   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.3-cp34-cp34m-linux_armv6l.whl#sha256=e98b858f83fb7cb0f5c4f4c9dde11da1d2f97a22da162624fc253addfc1b1c56 (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,324   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.3-cp34-cp34m-linux_armv7l.whl#sha256=e98b858f83fb7cb0f5c4f4c9dde11da1d2f97a22da162624fc253addfc1b1c56 (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,325   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.3-cp35-cp35m-linux_armv6l.whl#sha256=39e33c6f24821296c6910712ef8253e663d36726ac6e084ba121a3b744d39a47 (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,326   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.3-cp35-cp35m-linux_armv7l.whl#sha256=39e33c6f24821296c6910712ef8253e663d36726ac6e084ba121a3b744d39a47 (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,326   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.3-cp37-cp37m-linux_armv6l.whl#sha256=343a8ef460b700f7e0e9661ea7252a162c6c9c4b4b2152d24075e1d08c7f588e (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,327   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.3-cp37-cp37m-linux_armv7l.whl#sha256=343a8ef460b700f7e0e9661ea7252a162c6c9c4b4b2152d24075e1d08c7f588e (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,328   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.3-cp39-cp39-linux_armv6l.whl#sha256=3690e174ecc0095e8ed79d7507ce4c0f013996a92962bc170ccec96812788f82 (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,328   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.3-cp39-cp39-linux_armv7l.whl#sha256=3690e174ecc0095e8ed79d7507ce4c0f013996a92962bc170ccec96812788f82 (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,329   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.1.0-cp34-cp34m-linux_armv6l.whl#sha256=6b7773052481af929dcfc3febcf09d20a46e1d2084eaebc566c246dff6c6402f (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,330   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.1.0-cp34-cp34m-linux_armv7l.whl#sha256=6b7773052481af929dcfc3febcf09d20a46e1d2084eaebc566c246dff6c6402f (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,330   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.1.0-cp35-cp35m-linux_armv6l.whl#sha256=5422629ba4988a3474b07aa6a3700267d19adaa0f82c61093cab9112c93bd31d (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,331   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.1.0-cp35-cp35m-linux_armv7l.whl#sha256=5422629ba4988a3474b07aa6a3700267d19adaa0f82c61093cab9112c93bd31d (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,331   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.1.0-cp37-cp37m-linux_armv6l.whl#sha256=f64dcc740377ca2dc0c89b34443c76b869be5977d38e447ed414f2393bfc52dc (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,332   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.1.0-cp37-cp37m-linux_armv7l.whl#sha256=f64dcc740377ca2dc0c89b34443c76b869be5977d38e447ed414f2393bfc52dc (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,333   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.1.0-cp39-cp39-linux_armv6l.whl#sha256=148e98b510ed810e6a520881ee1edb8f316c2ad632465a45a7339d122fed8caa (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,333   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.1.0-cp39-cp39-linux_armv7l.whl#sha256=148e98b510ed810e6a520881ee1edb8f316c2ad632465a45a7339d122fed8caa (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,334   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.2.0-py3-none-any.whl#sha256=67196e64d155c21e9e4a56fdb9e38d5616398ae761ef0a93ce090eeb61090b54 (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,335   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.2.1-py3-none-any.whl#sha256=5b2ecf5371bc1ad3f63cc83a505f2b8b9a2ad97ae8acc489c472e6d7b048eedc (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,335   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.2.2-py3-none-any.whl#sha256=0e5b906d6a253a746477d3258f4056666bd2c0dc018ce61549911535a8f70869 (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,336   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.2.3-py3-none-any.whl#sha256=7011b58018a73eb9b68717c27b2be53b806002a8ef6bc1dce96fca60556d5fea (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,336   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.3.0-py3-none-any.whl#sha256=90f15ddb37d1252e1b4d14b7693cc93eb154e8b32d688be1a0be9979027c226d (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,337   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.3.1-py3-none-any.whl#sha256=12870844d7c9a163afe074c7eefabc258a4d066ace893a0274f53f0c29b8fdcb (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,338   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.3.2-py3-none-any.whl#sha256=71ef46d8b3afde88aa24a2dbf708bb41b6953485ff83a0a208e9db2665fe10c4 (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,338   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.3.3-py3-none-any.whl#sha256=465699b14119e4d2a842e4ec79acf9f1aeaf77128aa8c04accb887cfff11a2b4 (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,339   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.3.4-py3-none-any.whl#sha256=80f7caf125762176eaeecf2bed6bb9b130bbbcd31f3214a8f5997be8870d2bc4 (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,340   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.4.0-py3-none-any.whl#sha256=388fdc753c3b6bc741bf732aa9a6b85a29cc271d2367aacc4eadc381e8bd0b7c (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,340   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.4.1-py3-none-any.whl#sha256=c7436c7db75936bac606cc8af8d05a492b48c5d5bcb582871d479aca7a270451 (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,341   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.4.2-py3-none-any.whl#sha256=78496fd0cf6b1bcc79201cb623eaae5f56156644e3da9b3d0d3a629649530f97 (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,342   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.4.3-py3-none-any.whl#sha256=fac366abbd0979e83e3dc8b93274d820070e6d91fc0373aef5e3a10ce4b13aff (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,342   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.4.4-py3-none-any.whl#sha256=c335d006901d5acc5b99a37758afcf124c3dbc76cf935ebcbecf2031883da70f (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,343   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.5.0-py3-none-any.whl#sha256=6e46958311c83d72e2c0f5f9b84d2453ab73469c2b58f0e559093aaf935dfde3 (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,344   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.5.1-py3-none-any.whl#sha256=1e2441185afe5cc09f11dd375ad35a722a8557cfa6d58dafa105b6cc82f8dace (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,344   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0-py3-none-any.whl#sha256=a90b83350ffdd162d0d81d6b1fc8f7193b5a97d25088dd494e44c9ed5bc1ee68 (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,345   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0b1-py3-none-any.whl#sha256=d11c7ac7f6e793af3a339a75fe273ad0a8257511394b6e6949f7f8ac3638c822 (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,345   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0b2-py3-none-any.whl#sha256=2c6c7cf955df0ed5f5eeaf9b2ab43ac47d2cfe7743f0defb67146a2806ecee74 (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,346   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0b3-py3-none-any.whl#sha256=cbeabf00ab1a808d4b718129133ceb184ab58585f12d82d7465fe35cfe520d9b (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,347   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0b4-py3-none-any.whl#sha256=aef8869582a5860da64b5bcf629ee3e030c70dc783ce7834b7da2e3f4e32d47d (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,347   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0b5-py3-none-any.whl#sha256=0fe0b546464bc694c651c606052043a0f7c9acaf125ba4bd1fde9f349e88e959 (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,348   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0b6-py3-none-any.whl#sha256=03c84f86922a46a247c25d34fccab1287e71efb2795ad00da3313162b628b5fc (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,349   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0b7-py3-none-any.whl#sha256=2bd15289b4956ee24558f807ff69319d0585a640c676e82f48b26d4f7eeb77fc (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,349   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0rc1-py3-none-any.whl#sha256=f17628f12454edfa542ff6dd8b1597e6dbe27366006582efa2b65537a009272d (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,350   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0rc2-py3-none-any.whl#sha256=089f457c494767a9d5153745dd6e12ae4c9093451d5ef15fea11ba0e5b603bad (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,351   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.1-py3-none-any.whl#sha256=54fce55ef8d76b985bf74e188b670f577d37240526e4cb10a22f84182e7e6987 (from https://www.piwheels.org/simple/pele-platform/)
2021-12-19T05:11:05,393 Given no hashes to check 1 links for project 'pele-platform': discarding no candidates
2021-12-19T05:11:05,425 Collecting pele-platform==1.6.2
2021-12-19T05:11:05,429   Created temporary directory: /tmp/pip-unpack-0b7itfsv
2021-12-19T05:11:06,619   Downloading pele_platform-1.6.2.tar.gz (12.3 MB)
2021-12-19T05:11:19,875   Added pele-platform==1.6.2 from https://files.pythonhosted.org/packages/93/57/b35e69b71f975bb64d4221e94945a7f30e39d83b16df0eb453914ba800ce/pele_platform-1.6.2.tar.gz#sha256=25edaf5664128f5ef460dbc67731fbf8c01528303bd5ba84ae93bc7c11c52ab7 to build tracker '/tmp/pip-req-tracker-lqg501j_'
2021-12-19T05:11:19,879     Running setup.py (path:/tmp/pip-wheel-oukfl4kj/pele-platform_83ca5750cb214cf687ec03753698a397/setup.py) egg_info for package pele-platform
2021-12-19T05:11:19,882     Created temporary directory: /tmp/pip-pip-egg-info-5m5yttze
2021-12-19T05:11:19,883     Running command python setup.py egg_info
2021-12-19T05:11:22,910     running egg_info
2021-12-19T05:11:22,916     creating /tmp/pip-pip-egg-info-5m5yttze/pele_platform.egg-info
2021-12-19T05:11:22,918     writing /tmp/pip-pip-egg-info-5m5yttze/pele_platform.egg-info/PKG-INFO
2021-12-19T05:11:22,923     writing top-level names to /tmp/pip-pip-egg-info-5m5yttze/pele_platform.egg-info/top_level.txt
2021-12-19T05:11:22,926     writing dependency_links to /tmp/pip-pip-egg-info-5m5yttze/pele_platform.egg-info/dependency_links.txt
2021-12-19T05:11:22,930     writing requirements to /tmp/pip-pip-egg-info-5m5yttze/pele_platform.egg-info/requires.txt
2021-12-19T05:11:22,934     writing manifest file '/tmp/pip-pip-egg-info-5m5yttze/pele_platform.egg-info/SOURCES.txt'
2021-12-19T05:11:22,987     reading manifest file '/tmp/pip-pip-egg-info-5m5yttze/pele_platform.egg-info/SOURCES.txt'
2021-12-19T05:11:22,990     reading manifest template 'MANIFEST.in'
2021-12-19T05:11:22,993     warning: no files found matching 'pele_platform/Utilities/PlopRotTemp/param/*'
2021-12-19T05:11:22,994     warning: no files found matching 'pele_platform/AdaptivePELE/atomset/*'
2021-12-19T05:11:22,995     warning: no files found matching 'pele_platform/AdaptivePELE/freeEnergies/*'
2021-12-19T05:11:22,996     warning: no files found matching '*' under directory 'pele_platform/Utilities/PPP/Data/'
2021-12-19T05:11:23,489     warning: no files found matching '*' under directory 'tests/data'
2021-12-19T05:11:23,538     writing manifest file '/tmp/pip-pip-egg-info-5m5yttze/pele_platform.egg-info/SOURCES.txt'
2021-12-19T05:11:23,678   Source in /tmp/pip-wheel-oukfl4kj/pele-platform_83ca5750cb214cf687ec03753698a397 has version 1.6.2, which satisfies requirement pele-platform==1.6.2 from https://files.pythonhosted.org/packages/93/57/b35e69b71f975bb64d4221e94945a7f30e39d83b16df0eb453914ba800ce/pele_platform-1.6.2.tar.gz#sha256=25edaf5664128f5ef460dbc67731fbf8c01528303bd5ba84ae93bc7c11c52ab7
2021-12-19T05:11:23,680   Removed pele-platform==1.6.2 from https://files.pythonhosted.org/packages/93/57/b35e69b71f975bb64d4221e94945a7f30e39d83b16df0eb453914ba800ce/pele_platform-1.6.2.tar.gz#sha256=25edaf5664128f5ef460dbc67731fbf8c01528303bd5ba84ae93bc7c11c52ab7 from build tracker '/tmp/pip-req-tracker-lqg501j_'
2021-12-19T05:11:23,688 Created temporary directory: /tmp/pip-unpack-ner1c338
2021-12-19T05:11:23,689 Building wheels for collected packages: pele-platform
2021-12-19T05:11:23,698   Created temporary directory: /tmp/pip-wheel-zk2_ydro
2021-12-19T05:11:23,699   Building wheel for pele-platform (setup.py): started
2021-12-19T05:11:23,700   Destination directory: /tmp/pip-wheel-zk2_ydro
2021-12-19T05:11:23,700   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-oukfl4kj/pele-platform_83ca5750cb214cf687ec03753698a397/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-oukfl4kj/pele-platform_83ca5750cb214cf687ec03753698a397/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-zk2_ydro
2021-12-19T05:11:26,416   running bdist_wheel
2021-12-19T05:11:26,427   running build
2021-12-19T05:11:26,427   running build_py
2021-12-19T05:11:26,440   creating build
2021-12-19T05:11:26,440   creating build/lib
2021-12-19T05:11:26,442   creating build/lib/pele_platform
2021-12-19T05:11:26,444   copying pele_platform/plotter.py -> build/lib/pele_platform
2021-12-19T05:11:26,455   copying pele_platform/_version.py -> build/lib/pele_platform
2021-12-19T05:11:26,459   copying pele_platform/__init__.py -> build/lib/pele_platform
2021-12-19T05:11:26,464   copying pele_platform/converter.py -> build/lib/pele_platform
2021-12-19T05:11:26,473   copying pele_platform/pathway_extractor.py -> build/lib/pele_platform
2021-12-19T05:11:26,479   copying pele_platform/main.py -> build/lib/pele_platform
2021-12-19T05:11:26,484   creating build/lib/pele_platform/covalent_docking
2021-12-19T05:11:26,486   copying pele_platform/covalent_docking/__init__.py -> build/lib/pele_platform/covalent_docking
2021-12-19T05:11:26,489   copying pele_platform/covalent_docking/main.py -> build/lib/pele_platform/covalent_docking
2021-12-19T05:11:26,496   creating build/lib/pele_platform/analysis
2021-12-19T05:11:26,499   copying pele_platform/analysis/interactive_plot.py -> build/lib/pele_platform/analysis
2021-12-19T05:11:26,507   copying pele_platform/analysis/data.py -> build/lib/pele_platform/analysis
2021-12-19T05:11:26,517   copying pele_platform/analysis/clustering.py -> build/lib/pele_platform/analysis
2021-12-19T05:11:26,523   copying pele_platform/analysis/analysis.py -> build/lib/pele_platform/analysis
2021-12-19T05:11:26,535   copying pele_platform/analysis/pdf_report.py -> build/lib/pele_platform/analysis
2021-12-19T05:11:26,540   copying pele_platform/analysis/__init__.py -> build/lib/pele_platform/analysis
2021-12-19T05:11:26,546   copying pele_platform/analysis/plot.py -> build/lib/pele_platform/analysis
2021-12-19T05:11:26,556   creating build/lib/pele_platform/site_finder
2021-12-19T05:11:26,560   copying pele_platform/site_finder/__init__.py -> build/lib/pele_platform/site_finder
2021-12-19T05:11:26,565   copying pele_platform/site_finder/main.py -> build/lib/pele_platform/site_finder
2021-12-19T05:11:26,572   creating build/lib/pele_platform/Checker
2021-12-19T05:11:26,575   copying pele_platform/Checker/pdb_checker.py -> build/lib/pele_platform/Checker
2021-12-19T05:11:26,581   copying pele_platform/Checker/executable.py -> build/lib/pele_platform/Checker
2021-12-19T05:11:26,586   copying pele_platform/Checker/python_version.py -> build/lib/pele_platform/Checker
2021-12-19T05:11:26,590   copying pele_platform/Checker/valid_flags.py -> build/lib/pele_platform/Checker
2021-12-19T05:11:26,596   copying pele_platform/Checker/__init__.py -> build/lib/pele_platform/Checker
2021-12-19T05:11:26,600   copying pele_platform/Checker/environment_variables.py -> build/lib/pele_platform/Checker
2021-12-19T05:11:26,605   copying pele_platform/Checker/main.py -> build/lib/pele_platform/Checker
2021-12-19T05:11:26,611   creating build/lib/pele_platform/Errors
2021-12-19T05:11:26,614   copying pele_platform/Errors/__init__.py -> build/lib/pele_platform/Errors
2021-12-19T05:11:26,618   copying pele_platform/Errors/custom_errors.py -> build/lib/pele_platform/Errors
2021-12-19T05:11:26,624   creating build/lib/pele_platform/Frag
2021-12-19T05:11:26,627   copying pele_platform/Frag/libraries.py -> build/lib/pele_platform/Frag
2021-12-19T05:11:26,633   copying pele_platform/Frag/fragments.py -> build/lib/pele_platform/Frag
2021-12-19T05:11:26,638   copying pele_platform/Frag/checker.py -> build/lib/pele_platform/Frag
2021-12-19T05:11:26,643   copying pele_platform/Frag/simulation.py -> build/lib/pele_platform/Frag
2021-12-19T05:11:26,649   copying pele_platform/Frag/helpers.py -> build/lib/pele_platform/Frag
2021-12-19T05:11:26,655   copying pele_platform/Frag/atoms.py -> build/lib/pele_platform/Frag
2021-12-19T05:11:26,660   copying pele_platform/Frag/analysis.py -> build/lib/pele_platform/Frag
2021-12-19T05:11:26,667   copying pele_platform/Frag/__init__.py -> build/lib/pele_platform/Frag
2021-12-19T05:11:26,672   copying pele_platform/Frag/generative_model.py -> build/lib/pele_platform/Frag
2021-12-19T05:11:26,679   creating build/lib/pele_platform/features
2021-12-19T05:11:26,681   copying pele_platform/features/adaptive.py -> build/lib/pele_platform/features
2021-12-19T05:11:26,687   copying pele_platform/features/frag.py -> build/lib/pele_platform/features
2021-12-19T05:11:26,691   copying pele_platform/features/__init__.py -> build/lib/pele_platform/features
2021-12-19T05:11:26,695   creating build/lib/pele_platform/RNA
2021-12-19T05:11:26,697   copying pele_platform/RNA/prep.py -> build/lib/pele_platform/RNA
2021-12-19T05:11:26,702   copying pele_platform/RNA/__init__.py -> build/lib/pele_platform/RNA
2021-12-19T05:11:26,709   creating build/lib/pele_platform/Adaptive
2021-12-19T05:11:26,712   copying pele_platform/Adaptive/preequilibrator.py -> build/lib/pele_platform/Adaptive
2021-12-19T05:11:26,718   copying pele_platform/Adaptive/metrics.py -> build/lib/pele_platform/Adaptive
2021-12-19T05:11:26,723   copying pele_platform/Adaptive/simulation.py -> build/lib/pele_platform/Adaptive
2021-12-19T05:11:26,729   copying pele_platform/Adaptive/__init__.py -> build/lib/pele_platform/Adaptive
2021-12-19T05:11:26,733   copying pele_platform/Adaptive/box.py -> build/lib/pele_platform/Adaptive
2021-12-19T05:11:26,737   copying pele_platform/Adaptive/pca.py -> build/lib/pele_platform/Adaptive
2021-12-19T05:11:26,740   copying pele_platform/Adaptive/parametrizer.py -> build/lib/pele_platform/Adaptive
2021-12-19T05:11:26,750   copying pele_platform/Adaptive/plop_ligand_parametrization.py -> build/lib/pele_platform/Adaptive
2021-12-19T05:11:26,756   copying pele_platform/Adaptive/interaction_restrictions.py -> build/lib/pele_platform/Adaptive
2021-12-19T05:11:26,762   copying pele_platform/Adaptive/plop_solvent.py -> build/lib/pele_platform/Adaptive
2021-12-19T05:11:26,767   creating build/lib/pele_platform/constants
2021-12-19T05:11:26,769   copying pele_platform/constants/pele_params.py -> build/lib/pele_platform/constants
2021-12-19T05:11:26,776   copying pele_platform/constants/constants.py -> build/lib/pele_platform/constants
2021-12-19T05:11:26,781   copying pele_platform/constants/__init__.py -> build/lib/pele_platform/constants
2021-12-19T05:11:26,787   creating build/lib/pele_platform/out_in
2021-12-19T05:11:26,790   copying pele_platform/out_in/__init__.py -> build/lib/pele_platform/out_in
2021-12-19T05:11:26,795   copying pele_platform/out_in/main.py -> build/lib/pele_platform/out_in
2021-12-19T05:11:26,802   creating build/lib/pele_platform/enzyme_engineering
2021-12-19T05:11:26,804   copying pele_platform/enzyme_engineering/__init__.py -> build/lib/pele_platform/enzyme_engineering
2021-12-19T05:11:26,808   copying pele_platform/enzyme_engineering/saturated_mutagenesis.py -> build/lib/pele_platform/enzyme_engineering
2021-12-19T05:11:26,814   creating build/lib/pele_platform/gpcr
2021-12-19T05:11:26,816   copying pele_platform/gpcr/__init__.py -> build/lib/pele_platform/gpcr
2021-12-19T05:11:26,820   copying pele_platform/gpcr/main.py -> build/lib/pele_platform/gpcr
2021-12-19T05:11:26,826   creating build/lib/pele_platform/Utilities
2021-12-19T05:11:26,828   copying pele_platform/Utilities/__init__.py -> build/lib/pele_platform/Utilities
2021-12-19T05:11:26,835   creating build/lib/pele_platform/PPI
2021-12-19T05:11:26,837   copying pele_platform/PPI/simulation_launcher.py -> build/lib/pele_platform/PPI
2021-12-19T05:11:26,843   copying pele_platform/PPI/preparation.py -> build/lib/pele_platform/PPI
2021-12-19T05:11:26,847   copying pele_platform/PPI/cluster.py -> build/lib/pele_platform/PPI
2021-12-19T05:11:26,851   copying pele_platform/PPI/__init__.py -> build/lib/pele_platform/PPI
2021-12-19T05:11:26,854   copying pele_platform/PPI/main.py -> build/lib/pele_platform/PPI
2021-12-19T05:11:26,860   creating build/lib/pele_platform/Frag/parameters
2021-12-19T05:11:26,862   copying pele_platform/Frag/parameters/files.py -> build/lib/pele_platform/Frag/parameters
2021-12-19T05:11:26,868   copying pele_platform/Frag/parameters/metrics.py -> build/lib/pele_platform/Frag/parameters
2021-12-19T05:11:26,873   copying pele_platform/Frag/parameters/simulation.py -> build/lib/pele_platform/Frag/parameters
2021-12-19T05:11:26,879   copying pele_platform/Frag/parameters/optional.py -> build/lib/pele_platform/Frag/parameters
2021-12-19T05:11:26,885   copying pele_platform/Frag/parameters/water.py -> build/lib/pele_platform/Frag/parameters
2021-12-19T05:11:26,889   copying pele_platform/Frag/parameters/__init__.py -> build/lib/pele_platform/Frag/parameters
2021-12-19T05:11:26,894   creating build/lib/pele_platform/Utilities/Parameters
2021-12-19T05:11:26,896   copying pele_platform/Utilities/Parameters/parameters.py -> build/lib/pele_platform/Utilities/Parameters
2021-12-19T05:11:26,902   copying pele_platform/Utilities/Parameters/__init__.py -> build/lib/pele_platform/Utilities/Parameters
2021-12-19T05:11:26,913   creating build/lib/pele_platform/Utilities/Helpers
2021-12-19T05:11:26,916   copying pele_platform/Utilities/Helpers/plop_launcher.py -> build/lib/pele_platform/Utilities/Helpers
2021-12-19T05:11:26,922   copying pele_platform/Utilities/Helpers/simulation.py -> build/lib/pele_platform/Utilities/Helpers
2021-12-19T05:11:26,928   copying pele_platform/Utilities/Helpers/helpers.py -> build/lib/pele_platform/Utilities/Helpers
2021-12-19T05:11:26,935   copying pele_platform/Utilities/Helpers/map_atoms.py -> build/lib/pele_platform/Utilities/Helpers
2021-12-19T05:11:26,940   copying pele_platform/Utilities/Helpers/yaml_parser.py -> build/lib/pele_platform/Utilities/Helpers
2021-12-19T05:11:26,947   copying pele_platform/Utilities/Helpers/interaction_constraints.py -> build/lib/pele_platform/Utilities/Helpers
2021-12-19T05:11:26,953   copying pele_platform/Utilities/Helpers/missing_residues.py -> build/lib/pele_platform/Utilities/Helpers
2021-12-19T05:11:26,959   copying pele_platform/Utilities/Helpers/water.py -> build/lib/pele_platform/Utilities/Helpers
2021-12-19T05:11:26,967   copying pele_platform/Utilities/Helpers/launcher.py -> build/lib/pele_platform/Utilities/Helpers
2021-12-19T05:11:26,971   copying pele_platform/Utilities/Helpers/ligand_conformations.py -> build/lib/pele_platform/Utilities/Helpers
2021-12-19T05:11:26,976   copying pele_platform/Utilities/Helpers/calculatePCA4PELE.py -> build/lib/pele_platform/Utilities/Helpers
2021-12-19T05:11:26,982   copying pele_platform/Utilities/Helpers/__init__.py -> build/lib/pele_platform/Utilities/Helpers
2021-12-19T05:11:26,986   copying pele_platform/Utilities/Helpers/conda_deployment.py -> build/lib/pele_platform/Utilities/Helpers
2021-12-19T05:11:26,992   copying pele_platform/Utilities/Helpers/template_builder.py -> build/lib/pele_platform/Utilities/Helpers
2021-12-19T05:11:26,997   copying pele_platform/Utilities/Helpers/system_prep.py -> build/lib/pele_platform/Utilities/Helpers
2021-12-19T05:11:27,004   copying pele_platform/Utilities/Helpers/randomize.py -> build/lib/pele_platform/Utilities/Helpers
2021-12-19T05:11:27,010   copying pele_platform/Utilities/Helpers/center_of_mass.py -> build/lib/pele_platform/Utilities/Helpers
2021-12-19T05:11:27,016   copying pele_platform/Utilities/Helpers/solventOBCParamsGenerator.py -> build/lib/pele_platform/Utilities/Helpers
2021-12-19T05:11:27,021   copying pele_platform/Utilities/Helpers/bestStructs.py -> build/lib/pele_platform/Utilities/Helpers
2021-12-19T05:11:27,026   copying pele_platform/Utilities/Helpers/protein_wizard.py -> build/lib/pele_platform/Utilities/Helpers
2021-12-19T05:11:27,033   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams
2021-12-19T05:11:27,036   copying pele_platform/Utilities/Parameters/SimulationParams/simulation_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams
2021-12-19T05:11:27,045   copying pele_platform/Utilities/Parameters/SimulationParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams
2021-12-19T05:11:27,050   creating build/lib/pele_platform/Utilities/Parameters/SimulationFolders
2021-12-19T05:11:27,052   copying pele_platform/Utilities/Parameters/SimulationFolders/simulation_folders.py -> build/lib/pele_platform/Utilities/Parameters/SimulationFolders
2021-12-19T05:11:27,056   copying pele_platform/Utilities/Parameters/SimulationFolders/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationFolders
2021-12-19T05:11:27,061   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2021-12-19T05:11:27,062   copying pele_platform/Utilities/Parameters/SimulationParams/MSMParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2021-12-19T05:11:27,066   copying pele_platform/Utilities/Parameters/SimulationParams/MSMParams/msm_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2021-12-19T05:11:27,071   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2021-12-19T05:11:27,073   copying pele_platform/Utilities/Parameters/SimulationParams/GlideParams/glide_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2021-12-19T05:11:27,077   copying pele_platform/Utilities/Parameters/SimulationParams/GlideParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2021-12-19T05:11:27,081   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA
2021-12-19T05:11:27,083   copying pele_platform/Utilities/Parameters/SimulationParams/PCA/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA
2021-12-19T05:11:27,087   copying pele_platform/Utilities/Parameters/SimulationParams/PCA/pca.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA
2021-12-19T05:11:27,094   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2021-12-19T05:11:27,096   copying pele_platform/Utilities/Parameters/SimulationParams/InOutParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2021-12-19T05:11:27,101   copying pele_platform/Utilities/Parameters/SimulationParams/InOutParams/inout_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2021-12-19T05:11:27,109   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/site_finder
2021-12-19T05:11:27,111   copying pele_platform/Utilities/Parameters/SimulationParams/site_finder/site_finder.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/site_finder
2021-12-19T05:11:27,115   copying pele_platform/Utilities/Parameters/SimulationParams/site_finder/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/site_finder
2021-12-19T05:11:27,119   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2021-12-19T05:11:27,121   copying pele_platform/Utilities/Parameters/SimulationParams/BiasParams/bias_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2021-12-19T05:11:27,125   copying pele_platform/Utilities/Parameters/SimulationParams/BiasParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2021-12-19T05:11:27,129   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI
2021-12-19T05:11:27,131   copying pele_platform/Utilities/Parameters/SimulationParams/PPI/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI
2021-12-19T05:11:27,135   copying pele_platform/Utilities/Parameters/SimulationParams/PPI/ppi.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI
2021-12-19T05:11:27,140   creating build/lib/pele_platform/Utilities/Helpers/constraints
2021-12-19T05:11:27,142   copying pele_platform/Utilities/Helpers/constraints/smiles_constraints.py -> build/lib/pele_platform/Utilities/Helpers/constraints
2021-12-19T05:11:27,147   copying pele_platform/Utilities/Helpers/constraints/__init__.py -> build/lib/pele_platform/Utilities/Helpers/constraints
2021-12-19T05:11:27,151   copying pele_platform/Utilities/Helpers/constraints/alpha_constraints.py -> build/lib/pele_platform/Utilities/Helpers/constraints
2021-12-19T05:11:27,160   creating build/lib/pele_platform/Utilities/Helpers/Metals
2021-12-19T05:11:27,162   copying pele_platform/Utilities/Helpers/Metals/metal_constraints.py -> build/lib/pele_platform/Utilities/Helpers/Metals
2021-12-19T05:11:27,170   copying pele_platform/Utilities/Helpers/Metals/__init__.py -> build/lib/pele_platform/Utilities/Helpers/Metals
2021-12-19T05:11:27,173   copying pele_platform/Utilities/Helpers/Metals/metal_polarisation.py -> build/lib/pele_platform/Utilities/Helpers/Metals
2021-12-19T05:11:27,178   running egg_info
2021-12-19T05:11:27,198   writing dependency_links to pele_platform.egg-info/dependency_links.txt
2021-12-19T05:11:27,201   writing requirements to pele_platform.egg-info/requires.txt
2021-12-19T05:11:27,204   writing pele_platform.egg-info/PKG-INFO
2021-12-19T05:11:27,208   writing top-level names to pele_platform.egg-info/top_level.txt
2021-12-19T05:11:27,255   reading manifest file 'pele_platform.egg-info/SOURCES.txt'
2021-12-19T05:11:27,283   reading manifest template 'MANIFEST.in'
2021-12-19T05:11:27,285   warning: no files found matching 'pele_platform/Utilities/PlopRotTemp/param/*'
2021-12-19T05:11:27,286   warning: no files found matching 'pele_platform/AdaptivePELE/atomset/*'
2021-12-19T05:11:27,287   warning: no files found matching 'pele_platform/AdaptivePELE/freeEnergies/*'
2021-12-19T05:11:27,287   warning: no files found matching '*' under directory 'pele_platform/Utilities/PPP/Data/'
2021-12-19T05:11:27,769   warning: no files found matching '*' under directory 'tests/data'
2021-12-19T05:11:27,842   writing manifest file 'pele_platform.egg-info/SOURCES.txt'
2021-12-19T05:11:27,953   creating build/lib/pele_platform/Examples
2021-12-19T05:11:27,955   copying pele_platform/Examples/test.sl -> build/lib/pele_platform/Examples
2021-12-19T05:11:27,960   creating build/lib/pele_platform/Examples/Adaptive
2021-12-19T05:11:27,962   copying pele_platform/Examples/Adaptive/STR.rot.assign -> build/lib/pele_platform/Examples/Adaptive
2021-12-19T05:11:27,967   copying pele_platform/Examples/Adaptive/adaptive.conf -> build/lib/pele_platform/Examples/Adaptive
2021-12-19T05:11:27,971   copying pele_platform/Examples/Adaptive/pele_file_4Adaptive.conf -> build/lib/pele_platform/Examples/Adaptive
2021-12-19T05:11:27,977   copying pele_platform/Examples/Adaptive/strz -> build/lib/pele_platform/Examples/Adaptive
2021-12-19T05:11:27,988   copying pele_platform/Examples/Adaptive/test.sl -> build/lib/pele_platform/Examples/Adaptive
2021-12-19T05:11:27,994   creating build/lib/pele_platform/Examples/Msm
2021-12-19T05:11:27,996   copying pele_platform/Examples/Msm/AS4_INIT.mae -> build/lib/pele_platform/Examples/Msm
2021-12-19T05:11:28,005   copying pele_platform/Examples/Msm/PR_1A28_protein.pdb -> build/lib/pele_platform/Examples/Msm
2021-12-19T05:11:28,044   copying pele_platform/Examples/Msm/PR_1A28_xray_-_minimized.pdb -> build/lib/pele_platform/Examples/Msm
2021-12-19T05:11:28,083   copying pele_platform/Examples/Msm/PR_1A28_xray_-_minimized_processed.pdb -> build/lib/pele_platform/Examples/Msm
2021-12-19T05:11:28,121   copying pele_platform/Examples/Msm/PR_AS4.pdb -> build/lib/pele_platform/Examples/Msm
2021-12-19T05:11:28,159   copying pele_platform/Examples/Msm/input.yaml -> build/lib/pele_platform/Examples/Msm
2021-12-19T05:11:28,164   creating build/lib/pele_platform/Examples/PPI
2021-12-19T05:11:28,166   copying pele_platform/Examples/PPI/1f47_ligand.pdb -> build/lib/pele_platform/Examples/PPI
2021-12-19T05:11:28,174   copying pele_platform/Examples/PPI/1f47_prep.pdb -> build/lib/pele_platform/Examples/PPI
2021-12-19T05:11:28,197   copying pele_platform/Examples/PPI/1tnf_ligand.pdb -> build/lib/pele_platform/Examples/PPI
2021-12-19T05:11:28,204   copying pele_platform/Examples/PPI/1tnf_prep.pdb -> build/lib/pele_platform/Examples/PPI
2021-12-19T05:11:28,266   copying pele_platform/Examples/PPI/input.yaml -> build/lib/pele_platform/Examples/PPI
2021-12-19T05:11:28,272   copying pele_platform/Examples/PPI/input_folder.yaml -> build/lib/pele_platform/Examples/PPI
2021-12-19T05:11:28,279   copying pele_platform/Examples/PPI/input_skipref.yaml -> build/lib/pele_platform/Examples/PPI
2021-12-19T05:11:28,285   creating build/lib/pele_platform/Examples/RNA
2021-12-19T05:11:28,286   copying pele_platform/Examples/RNA/2l94.yaml -> build/lib/pele_platform/Examples/RNA
2021-12-19T05:11:28,291   copying pele_platform/Examples/RNA/5C45_prep.pdb -> build/lib/pele_platform/Examples/RNA
2021-12-19T05:11:28,333   copying pele_platform/Examples/RNA/5C45_prep_proc.pdb -> build/lib/pele_platform/Examples/RNA
2021-12-19T05:11:28,376   copying pele_platform/Examples/RNA/input.yaml -> build/lib/pele_platform/Examples/RNA
2021-12-19T05:11:28,383   copying pele_platform/Examples/RNA/input_induced.yaml -> build/lib/pele_platform/Examples/RNA
2021-12-19T05:11:28,389   creating build/lib/pele_platform/Examples/analysis
2021-12-19T05:11:28,391   copying pele_platform/Examples/analysis/input.yaml -> build/lib/pele_platform/Examples/analysis
2021-12-19T05:11:28,397   copying pele_platform/Examples/analysis/input_flags.yaml -> build/lib/pele_platform/Examples/analysis
2021-12-19T05:11:28,404   copying pele_platform/Examples/analysis/input_flags0.yaml -> build/lib/pele_platform/Examples/analysis
2021-12-19T05:11:28,409   copying pele_platform/Examples/analysis/input_xtc.yaml -> build/lib/pele_platform/Examples/analysis
2021-12-19T05:11:28,413   creating build/lib/pele_platform/Examples/analysis/data
2021-12-19T05:11:28,415   copying pele_platform/Examples/analysis/data/MG.rot.assign -> build/lib/pele_platform/Examples/analysis/data
2021-12-19T05:11:28,419   copying pele_platform/Examples/analysis/data/STR.rot.assign -> build/lib/pele_platform/Examples/analysis/data
2021-12-19T05:11:28,423   copying pele_platform/Examples/analysis/data/adaptive.conf -> build/lib/pele_platform/Examples/analysis/data
2021-12-19T05:11:28,429   copying pele_platform/Examples/analysis/data/input.yaml -> build/lib/pele_platform/Examples/analysis/data
2021-12-19T05:11:28,435   copying pele_platform/Examples/analysis/data/input_flags.yaml -> build/lib/pele_platform/Examples/analysis/data
2021-12-19T05:11:28,441   copying pele_platform/Examples/analysis/data/input_flags0.yaml -> build/lib/pele_platform/Examples/analysis/data
2021-12-19T05:11:28,447   copying pele_platform/Examples/analysis/data/input_mae.yaml -> build/lib/pele_platform/Examples/analysis/data
2021-12-19T05:11:28,451   copying pele_platform/Examples/analysis/data/mgz -> build/lib/pele_platform/Examples/analysis/data
2021-12-19T05:11:28,455   copying pele_platform/Examples/analysis/data/pele.conf -> build/lib/pele_platform/Examples/analysis/data
2021-12-19T05:11:28,460   copying pele_platform/Examples/analysis/data/strz -> build/lib/pele_platform/Examples/analysis/data
2021-12-19T05:11:28,464   creating build/lib/pele_platform/Examples/analysis/data/empty_reports_output
2021-12-19T05:11:28,465   creating build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-12-19T05:11:28,468   copying pele_platform/Examples/analysis/data/empty_reports_output/0/report_1 -> build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-12-19T05:11:28,474   copying pele_platform/Examples/analysis/data/empty_reports_output/0/report_2 -> build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-12-19T05:11:28,481   copying pele_platform/Examples/analysis/data/empty_reports_output/0/topologyMapping.txt -> build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-12-19T05:11:28,487   copying pele_platform/Examples/analysis/data/empty_reports_output/0/trajectory_1.pdb -> build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-12-19T05:11:28,529   copying pele_platform/Examples/analysis/data/empty_reports_output/0/trajectory_2.pdb -> build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-12-19T05:11:28,646   creating build/lib/pele_platform/Examples/analysis/data/inputs
2021-12-19T05:11:28,648   copying pele_platform/Examples/analysis/data/inputs/input1.pdb -> build/lib/pele_platform/Examples/analysis/data/inputs
2021-12-19T05:11:28,689   copying pele_platform/Examples/analysis/data/inputs/input2.pdb -> build/lib/pele_platform/Examples/analysis/data/inputs
2021-12-19T05:11:28,728   copying pele_platform/Examples/analysis/data/inputs/input3.pdb -> build/lib/pele_platform/Examples/analysis/data/inputs
2021-12-19T05:11:28,767   creating build/lib/pele_platform/Examples/analysis/data/output
2021-12-19T05:11:28,769   copying pele_platform/Examples/analysis/data/output/originalControlFile.conf -> build/lib/pele_platform/Examples/analysis/data/output
2021-12-19T05:11:28,775   creating build/lib/pele_platform/Examples/analysis/data/output/0
2021-12-19T05:11:28,778   copying pele_platform/Examples/analysis/data/output/0/report_1 -> build/lib/pele_platform/Examples/analysis/data/output/0
2021-12-19T05:11:28,784   copying pele_platform/Examples/analysis/data/output/0/topologyMapping.txt -> build/lib/pele_platform/Examples/analysis/data/output/0
2021-12-19T05:11:28,791   copying pele_platform/Examples/analysis/data/output/0/trajectory_1.pdb -> build/lib/pele_platform/Examples/analysis/data/output/0
2021-12-19T05:11:28,829   creating build/lib/pele_platform/Examples/analysis/data/output/0/clustering
2021-12-19T05:11:28,831   copying pele_platform/Examples/analysis/data/output/0/clustering/object.pkl -> build/lib/pele_platform/Examples/analysis/data/output/0/clustering
2021-12-19T05:11:28,872   copying pele_platform/Examples/analysis/data/output/0/clustering/summary.txt -> build/lib/pele_platform/Examples/analysis/data/output/0/clustering
2021-12-19T05:11:28,878   creating build/lib/pele_platform/Examples/analysis/data/output/synchronization
2021-12-19T05:11:28,880   copying pele_platform/Examples/analysis/data/output/synchronization/syncFile.lock -> build/lib/pele_platform/Examples/analysis/data/output/synchronization
2021-12-19T05:11:28,887   creating build/lib/pele_platform/Examples/analysis/data/output/topologies
2021-12-19T05:11:28,890   copying pele_platform/Examples/analysis/data/output/topologies/topologies.pkl -> build/lib/pele_platform/Examples/analysis/data/output/topologies
2021-12-19T05:11:28,925   copying pele_platform/Examples/analysis/data/output/topologies/topology_0.pdb -> build/lib/pele_platform/Examples/analysis/data/output/topologies
2021-12-19T05:11:28,963   creating build/lib/pele_platform/Examples/analysis/data/xtc
2021-12-19T05:11:28,965   copying pele_platform/Examples/analysis/data/xtc/summary.csv -> build/lib/pele_platform/Examples/analysis/data/xtc
2021-12-19T05:11:28,972   creating build/lib/pele_platform/Examples/analysis/data/xtc/0
2021-12-19T05:11:28,974   copying pele_platform/Examples/analysis/data/xtc/0/report_1 -> build/lib/pele_platform/Examples/analysis/data/xtc/0
2021-12-19T05:11:28,981   copying pele_platform/Examples/analysis/data/xtc/0/report_2 -> build/lib/pele_platform/Examples/analysis/data/xtc/0
2021-12-19T05:11:28,987   copying pele_platform/Examples/analysis/data/xtc/0/trajectory_1.xtc -> build/lib/pele_platform/Examples/analysis/data/xtc/0
2021-12-19T05:11:28,994   copying pele_platform/Examples/analysis/data/xtc/0/trajectory_2.xtc -> build/lib/pele_platform/Examples/analysis/data/xtc/0
2021-12-19T05:11:29,001   creating build/lib/pele_platform/Examples/analysis/data/xtc/topologies
2021-12-19T05:11:29,002   copying pele_platform/Examples/analysis/data/xtc/topologies/topology_0.pdb -> build/lib/pele_platform/Examples/analysis/data/xtc/topologies
2021-12-19T05:11:29,017   creating build/lib/pele_platform/Examples/bias
2021-12-19T05:11:29,020   copying pele_platform/Examples/bias/complex.pdb -> build/lib/pele_platform/Examples/bias
2021-12-19T05:11:29,057   copying pele_platform/Examples/bias/input_defaults.yaml -> build/lib/pele_platform/Examples/bias
2021-12-19T05:11:29,063   creating build/lib/pele_platform/Examples/box
2021-12-19T05:11:29,066   copying pele_platform/Examples/box/input.yaml -> build/lib/pele_platform/Examples/box
2021-12-19T05:11:29,072   creating build/lib/pele_platform/Examples/checker
2021-12-19T05:11:29,075   copying pele_platform/Examples/checker/capped.pdb -> build/lib/pele_platform/Examples/checker
2021-12-19T05:11:29,212   copying pele_platform/Examples/checker/capped_no_connects.pdb -> build/lib/pele_platform/Examples/checker
2021-12-19T05:11:29,350   copying pele_platform/Examples/checker/complex.pdb -> build/lib/pele_platform/Examples/checker
2021-12-19T05:11:29,398   copying pele_platform/Examples/checker/complex2.pdb -> build/lib/pele_platform/Examples/checker
2021-12-19T05:11:29,425   copying pele_platform/Examples/checker/complex_unk.yaml -> build/lib/pele_platform/Examples/checker
2021-12-19T05:11:29,493   copying pele_platform/Examples/checker/incompatible_flags.yaml -> build/lib/pele_platform/Examples/checker
2021-12-19T05:11:29,500   copying pele_platform/Examples/checker/input.yaml -> build/lib/pele_platform/Examples/checker
2021-12-19T05:11:29,507   copying pele_platform/Examples/checker/input_atom_string.yaml -> build/lib/pele_platform/Examples/checker
2021-12-19T05:11:29,514   copying pele_platform/Examples/checker/input_env.yaml -> build/lib/pele_platform/Examples/checker
2021-12-19T05:11:29,519   copying pele_platform/Examples/checker/input_map_atom_num.yaml -> build/lib/pele_platform/Examples/checker
2021-12-19T05:11:29,524   copying pele_platform/Examples/checker/input_map_atom_str.yaml -> build/lib/pele_platform/Examples/checker
2021-12-19T05:11:29,529   copying pele_platform/Examples/checker/input_pele_exec.yaml -> build/lib/pele_platform/Examples/checker
2021-12-19T05:11:29,534   copying pele_platform/Examples/checker/input_rotamer.yaml -> build/lib/pele_platform/Examples/checker
2021-12-19T05:11:29,539   copying pele_platform/Examples/checker/input_space.yaml -> build/lib/pele_platform/Examples/checker
2021-12-19T05:11:29,545   copying pele_platform/Examples/checker/input_tab.yaml -> build/lib/pele_platform/Examples/checker
2021-12-19T05:11:29,550   copying pele_platform/Examples/checker/input_template.yaml -> build/lib/pele_platform/Examples/checker
2021-12-19T05:11:29,555   copying pele_platform/Examples/checker/input_underscore.yaml -> build/lib/pele_platform/Examples/checker
2021-12-19T05:11:29,560   copying pele_platform/Examples/checker/input_unk.yaml -> build/lib/pele_platform/Examples/checker
2021-12-19T05:11:29,566   copying pele_platform/Examples/checker/ligand2.pdb -> build/lib/pele_platform/Examples/checker
2021-12-19T05:11:29,572   copying pele_platform/Examples/checker/mapping_complex.pdb -> build/lib/pele_platform/Examples/checker
2021-12-19T05:11:29,642   copying pele_platform/Examples/checker/multiple_simulations.yaml -> build/lib/pele_platform/Examples/checker
2021-12-19T05:11:29,649   copying pele_platform/Examples/checker/negative_residues.pdb -> build/lib/pele_platform/Examples/checker
2021-12-19T05:11:29,657   creating build/lib/pele_platform/Examples/clustering
2021-12-19T05:11:29,661   copying pele_platform/Examples/clustering/summary.csv -> build/lib/pele_platform/Examples/clustering
2021-12-19T05:11:29,669   creating build/lib/pele_platform/Examples/clustering/0
2021-12-19T05:11:29,673   copying pele_platform/Examples/clustering/0/report_1 -> build/lib/pele_platform/Examples/clustering/0
2021-12-19T05:11:29,680   copying pele_platform/Examples/clustering/0/report_2 -> build/lib/pele_platform/Examples/clustering/0
2021-12-19T05:11:29,685   copying pele_platform/Examples/clustering/0/report_3 -> build/lib/pele_platform/Examples/clustering/0
2021-12-19T05:11:29,691   copying pele_platform/Examples/clustering/0/report_4 -> build/lib/pele_platform/Examples/clustering/0
2021-12-19T05:11:29,698   copying pele_platform/Examples/clustering/0/topologyMapping.txt -> build/lib/pele_platform/Examples/clustering/0
2021-12-19T05:11:29,706   copying pele_platform/Examples/clustering/0/trajectory_1.pdb -> build/lib/pele_platform/Examples/clustering/0
2021-12-19T05:11:29,779   copying pele_platform/Examples/clustering/0/trajectory_2.pdb -> build/lib/pele_platform/Examples/clustering/0
2021-12-19T05:11:29,819   copying pele_platform/Examples/clustering/0/trajectory_3.pdb -> build/lib/pele_platform/Examples/clustering/0
2021-12-19T05:11:29,891   copying pele_platform/Examples/clustering/0/trajectory_4.pdb -> build/lib/pele_platform/Examples/clustering/0
2021-12-19T05:11:29,963   creating build/lib/pele_platform/Examples/clustering/0/clustering
2021-12-19T05:11:29,967   copying pele_platform/Examples/clustering/0/clustering/object.pkl -> build/lib/pele_platform/Examples/clustering/0/clustering
2021-12-19T05:11:30,200   copying pele_platform/Examples/clustering/0/clustering/summary.txt -> build/lib/pele_platform/Examples/clustering/0/clustering
2021-12-19T05:11:30,205   creating build/lib/pele_platform/Examples/clustering_xtc
2021-12-19T05:11:30,208   copying pele_platform/Examples/clustering_xtc/water_clustering.yaml -> build/lib/pele_platform/Examples/clustering_xtc
2021-12-19T05:11:30,215   creating build/lib/pele_platform/Examples/clustering_xtc/0
2021-12-19T05:11:30,218   copying pele_platform/Examples/clustering_xtc/0/report_1 -> build/lib/pele_platform/Examples/clustering_xtc/0
2021-12-19T05:11:30,226   copying pele_platform/Examples/clustering_xtc/0/report_2 -> build/lib/pele_platform/Examples/clustering_xtc/0
2021-12-19T05:11:30,233   copying pele_platform/Examples/clustering_xtc/0/report_3 -> build/lib/pele_platform/Examples/clustering_xtc/0
2021-12-19T05:11:30,239   copying pele_platform/Examples/clustering_xtc/0/report_4 -> build/lib/pele_platform/Examples/clustering_xtc/0
2021-12-19T05:11:30,245   copying pele_platform/Examples/clustering_xtc/0/topology.pdb -> build/lib/pele_platform/Examples/clustering_xtc/0
2021-12-19T05:11:30,284   copying pele_platform/Examples/clustering_xtc/0/trajectory_1.xtc -> build/lib/pele_platform/Examples/clustering_xtc/0
2021-12-19T05:11:30,295   copying pele_platform/Examples/clustering_xtc/0/trajectory_2.xtc -> build/lib/pele_platform/Examples/clustering_xtc/0
2021-12-19T05:11:30,304   copying pele_platform/Examples/clustering_xtc/0/trajectory_3.xtc -> build/lib/pele_platform/Examples/clustering_xtc/0
2021-12-19T05:11:30,314   copying pele_platform/Examples/clustering_xtc/0/trajectory_4.xtc -> build/lib/pele_platform/Examples/clustering_xtc/0
2021-12-19T05:11:30,324   creating build/lib/pele_platform/Examples/constraints
2021-12-19T05:11:30,326   copying pele_platform/Examples/constraints/1zop.pdb -> build/lib/pele_platform/Examples/constraints
2021-12-19T05:11:30,357   copying pele_platform/Examples/constraints/4l3a_prep.pdb -> build/lib/pele_platform/Examples/constraints
2021-12-19T05:11:30,409   copying pele_platform/Examples/constraints/4qnr_prep.pdb -> build/lib/pele_platform/Examples/constraints
2021-12-19T05:11:30,460   copying pele_platform/Examples/constraints/4w4o_prep.pdb -> build/lib/pele_platform/Examples/constraints
2021-12-19T05:11:30,493   copying pele_platform/Examples/constraints/4w5i_prep.pdb -> build/lib/pele_platform/Examples/constraints
2021-12-19T05:11:30,524   copying pele_platform/Examples/constraints/4zu9_prep.pdb -> build/lib/pele_platform/Examples/constraints
2021-12-19T05:11:30,632   copying pele_platform/Examples/constraints/ca_constraints.pdb -> build/lib/pele_platform/Examples/constraints
2021-12-19T05:11:30,696   copying pele_platform/Examples/constraints/complex_smiles_error.pdb -> build/lib/pele_platform/Examples/constraints
2021-12-19T05:11:30,738   copying pele_platform/Examples/constraints/fail_input_permissive_constraints.yaml -> build/lib/pele_platform/Examples/constraints
2021-12-19T05:11:30,743   copying pele_platform/Examples/constraints/input_all_metal_constraints.yaml -> build/lib/pele_platform/Examples/constraints
2021-12-19T05:11:30,747   copying pele_platform/Examples/constraints/input_ca_noppp.yaml -> build/lib/pele_platform/Examples/constraints
2021-12-19T05:11:30,752   copying pele_platform/Examples/constraints/input_ca_ppp.yaml -> build/lib/pele_platform/Examples/constraints
2021-12-19T05:11:30,756   copying pele_platform/Examples/constraints/input_constrain_smarts.yaml -> build/lib/pele_platform/Examples/constraints
2021-12-19T05:11:30,760   copying pele_platform/Examples/constraints/input_constrain_smiles.yaml -> build/lib/pele_platform/Examples/constraints
2021-12-19T05:11:30,765   copying pele_platform/Examples/constraints/input_external_constraints.yaml -> build/lib/pele_platform/Examples/constraints
2021-12-19T05:11:30,769   copying pele_platform/Examples/constraints/input_ignore.yaml -> build/lib/pele_platform/Examples/constraints
2021-12-19T05:11:30,774   copying pele_platform/Examples/constraints/input_k.yaml -> build/lib/pele_platform/Examples/constraints
2021-12-19T05:11:30,778   copying pele_platform/Examples/constraints/input_metals.yaml -> build/lib/pele_platform/Examples/constraints
2021-12-19T05:11:30,783   copying pele_platform/Examples/constraints/input_no_metal_constraints.yaml -> build/lib/pele_platform/Examples/constraints
2021-12-19T05:11:30,787   copying pele_platform/Examples/constraints/input_permissive_exception.yaml -> build/lib/pele_platform/Examples/constraints
2021-12-19T05:11:30,792   copying pele_platform/Examples/constraints/input_smiles_error.yaml -> build/lib/pele_platform/Examples/constraints
2021-12-19T05:11:30,796   copying pele_platform/Examples/constraints/input_square_planar.yaml -> build/lib/pele_platform/Examples/constraints
2021-12-19T05:11:30,800   copying pele_platform/Examples/constraints/input_square_planar_polarisation.yaml -> build/lib/pele_platform/Examples/constraints
2021-12-19T05:11:30,805   copying pele_platform/Examples/constraints/input_tetrahedral.yaml -> build/lib/pele_platform/Examples/constraints
2021-12-19T05:11:30,809   copying pele_platform/Examples/constraints/no_connects.pdb -> build/lib/pele_platform/Examples/constraints
2021-12-19T05:11:30,814   copying pele_platform/Examples/constraints/pass_input_permissive_constraints.yaml -> build/lib/pele_platform/Examples/constraints
2021-12-19T05:11:30,818   creating build/lib/pele_platform/Examples/covalent_docking
2021-12-19T05:11:30,820   copying pele_platform/Examples/covalent_docking/5XXD_prepared.pdb -> build/lib/pele_platform/Examples/covalent_docking
2021-12-19T05:11:30,878   copying pele_platform/Examples/covalent_docking/6M06_prepared.pdb -> build/lib/pele_platform/Examples/covalent_docking
2021-12-19T05:11:30,930   copying pele_platform/Examples/covalent_docking/6P0M_prepared.pdb -> build/lib/pele_platform/Examples/covalent_docking
2021-12-19T05:11:30,967   copying pele_platform/Examples/covalent_docking/input1.yaml -> build/lib/pele_platform/Examples/covalent_docking
2021-12-19T05:11:30,971   copying pele_platform/Examples/covalent_docking/input2.yaml -> build/lib/pele_platform/Examples/covalent_docking
2021-12-19T05:11:30,976   copying pele_platform/Examples/covalent_docking/input3.yaml -> build/lib/pele_platform/Examples/covalent_docking
2021-12-19T05:11:30,980   copying pele_platform/Examples/covalent_docking/input_defaults.yaml -> build/lib/pele_platform/Examples/covalent_docking
2021-12-19T05:11:30,986   copying pele_platform/Examples/covalent_docking/input_defaults_refinement.yaml -> build/lib/pele_platform/Examples/covalent_docking
2021-12-19T05:11:30,993   creating build/lib/pele_platform/Examples/enzyme_engineering
2021-12-19T05:11:30,995   copying pele_platform/Examples/enzyme_engineering/restart_saturated_mutagenesis.yaml -> build/lib/pele_platform/Examples/enzyme_engineering
2021-12-19T05:11:31,002   copying pele_platform/Examples/enzyme_engineering/saturated_mutagenesis.yaml -> build/lib/pele_platform/Examples/enzyme_engineering
2021-12-19T05:11:31,007   copying pele_platform/Examples/enzyme_engineering/wrong_cpus.yaml -> build/lib/pele_platform/Examples/enzyme_engineering
2021-12-19T05:11:31,011   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart
2021-12-19T05:11:31,013   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/completed_mutations.log -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart
2021-12-19T05:11:31,018   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-12-19T05:11:31,019   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/ANL.mae -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-12-19T05:11:31,025   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/adaptive.conf -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-12-19T05:11:31,030   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/pele.conf -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-12-19T05:11:31,036   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/restart_saturated_mutagenesis.yaml -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-12-19T05:11:31,041   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal
2021-12-19T05:11:31,041   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/LigandRotamerLibs
2021-12-19T05:11:31,044   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/LigandRotamerLibs/ANL.rot.assign -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/LigandRotamerLibs
2021-12-19T05:11:31,049   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates
2021-12-19T05:11:31,050   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005
2021-12-19T05:11:31,051   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005/HeteroAtoms
2021-12-19T05:11:31,054   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005/HeteroAtoms/anlz -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005/HeteroAtoms
2021-12-19T05:11:31,060   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-12-19T05:11:31,062   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454A.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-12-19T05:11:31,123   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454A_processed.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-12-19T05:11:31,184   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454D.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-12-19T05:11:31,245   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454D_processed.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-12-19T05:11:31,305   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/ligand.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-12-19T05:11:31,313   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/receptor.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-12-19T05:11:31,377   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output
2021-12-19T05:11:31,381   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/originalControlFile.conf -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output
2021-12-19T05:11:31,390   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0
2021-12-19T05:11:31,393   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/topologyMapping.txt -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0
2021-12-19T05:11:31,401   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering
2021-12-19T05:11:31,405   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering/object.pkl -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering
2021-12-19T05:11:31,412   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering/summary.txt -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering
2021-12-19T05:11:31,417   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-12-19T05:11:31,420   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/report_1 -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-12-19T05:11:31,426   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/report_3 -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-12-19T05:11:31,431   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/trajectory_1.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-12-19T05:11:31,546   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/trajectory_3.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-12-19T05:11:31,667   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-12-19T05:11:31,671   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/report_2 -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-12-19T05:11:31,679   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/report_4 -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-12-19T05:11:31,688   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/trajectory_2.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-12-19T05:11:31,804   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/trajectory_4.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-12-19T05:11:31,923   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/synchronization
2021-12-19T05:11:31,925   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/synchronization/syncFile.lock -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/synchronization
2021-12-19T05:11:31,931   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2021-12-19T05:11:31,934   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies/topologies.pkl -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2021-12-19T05:11:32,039   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies/topology_0.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2021-12-19T05:11:32,104   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies/topology_1.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2021-12-19T05:11:32,168   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2021-12-19T05:11:32,172   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output/controlFile0.conf -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2021-12-19T05:11:32,181   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output/initial_0_0.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2021-12-19T05:11:32,245   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output/initial_0_1.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2021-12-19T05:11:32,309   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-12-19T05:11:32,311   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/ANL.mae -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-12-19T05:11:32,318   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/adaptive.conf -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-12-19T05:11:32,325   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/pele.conf -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-12-19T05:11:32,330   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/restart_saturated_mutagenesis.yaml -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-12-19T05:11:32,334   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-12-19T05:11:32,336   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/T454E.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-12-19T05:11:32,397   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/T454E_processed.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-12-19T05:11:32,460   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/ligand.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-12-19T05:11:32,466   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/receptor.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-12-19T05:11:32,530   creating build/lib/pele_platform/Examples/enzyme_engineering/pdb_files
2021-12-19T05:11:32,532   copying pele_platform/Examples/enzyme_engineering/pdb_files/T454A.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/pdb_files
2021-12-19T05:11:32,596   copying pele_platform/Examples/enzyme_engineering/pdb_files/T454D.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/pdb_files
2021-12-19T05:11:32,659   copying pele_platform/Examples/enzyme_engineering/pdb_files/T454E.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/pdb_files
2021-12-19T05:11:32,723   creating build/lib/pele_platform/Examples/exit
2021-12-19T05:11:32,725   copying pele_platform/Examples/exit/input.yaml -> build/lib/pele_platform/Examples/exit
2021-12-19T05:11:32,732   copying pele_platform/Examples/exit/input_defaults.yaml -> build/lib/pele_platform/Examples/exit
2021-12-19T05:11:32,738   creating build/lib/pele_platform/Examples/exit_soft
2021-12-19T05:11:32,741   copying pele_platform/Examples/exit_soft/input.yaml -> build/lib/pele_platform/Examples/exit_soft
2021-12-19T05:11:32,748   copying pele_platform/Examples/exit_soft/input_defaults.yaml -> build/lib/pele_platform/Examples/exit_soft
2021-12-19T05:11:32,753   creating build/lib/pele_platform/Examples/flags
2021-12-19T05:11:32,755   copying pele_platform/Examples/flags/input.yaml -> build/lib/pele_platform/Examples/flags
2021-12-19T05:11:32,760   creating build/lib/pele_platform/Examples/frag
2021-12-19T05:11:32,762   copying pele_platform/Examples/frag/1dyi_no_waters.pdb -> build/lib/pele_platform/Examples/frag
2021-12-19T05:11:32,786   copying pele_platform/Examples/frag/1dyi_waters.pdb -> build/lib/pele_platform/Examples/frag
2021-12-19T05:11:32,812   copying pele_platform/Examples/frag/1w7h_preparation_structure_2w.pdb -> build/lib/pele_platform/Examples/frag
2021-12-19T05:11:32,864   copying pele_platform/Examples/frag/1w7h_preparation_structure_2w_processed.pdb -> build/lib/pele_platform/Examples/frag
2021-12-19T05:11:32,915   copying pele_platform/Examples/frag/amino.pdb -> build/lib/pele_platform/Examples/frag
2021-12-19T05:11:32,922   copying pele_platform/Examples/frag/analysis.conf -> build/lib/pele_platform/Examples/frag
2021-12-19T05:11:32,928   copying pele_platform/Examples/frag/core.pdb -> build/lib/pele_platform/Examples/frag
2021-12-19T05:11:32,934   copying pele_platform/Examples/frag/flags.conf -> build/lib/pele_platform/Examples/frag
2021-12-19T05:11:32,938   copying pele_platform/Examples/frag/input_ai.yaml -> build/lib/pele_platform/Examples/frag
2021-12-19T05:11:32,943   copying pele_platform/Examples/frag/input_core.yaml -> build/lib/pele_platform/Examples/frag
2021-12-19T05:11:32,948   copying pele_platform/Examples/frag/input_core_sdf.yaml -> build/lib/pele_platform/Examples/frag
2021-12-19T05:11:32,953   copying pele_platform/Examples/frag/input_flags.yaml -> build/lib/pele_platform/Examples/frag
2021-12-19T05:11:32,959   copying pele_platform/Examples/frag/input_frag_waters.yaml -> build/lib/pele_platform/Examples/frag
2021-12-19T05:11:32,966   copying pele_platform/Examples/frag/input_fragment_atom.yaml -> build/lib/pele_platform/Examples/frag
2021-12-19T05:11:32,972   copying pele_platform/Examples/frag/input_lib_pdb.yaml -> build/lib/pele_platform/Examples/frag
2021-12-19T05:11:32,977   copying pele_platform/Examples/frag/input_lib_sdf.yaml -> build/lib/pele_platform/Examples/frag
2021-12-19T05:11:32,982   copying pele_platform/Examples/frag/input_point_analysis.yaml -> build/lib/pele_platform/Examples/frag
2021-12-19T05:11:32,986   copying pele_platform/Examples/frag/input_sim.yaml -> build/lib/pele_platform/Examples/frag
2021-12-19T05:11:32,991   copying pele_platform/Examples/frag/input_sim_xtc.yaml -> build/lib/pele_platform/Examples/frag
2021-12-19T05:11:32,997   copying pele_platform/Examples/frag/input_symmetry.yaml -> build/lib/pele_platform/Examples/frag
2021-12-19T05:11:33,003   copying pele_platform/Examples/frag/ligands.sdf -> build/lib/pele_platform/Examples/frag
2021-12-19T05:11:33,010   copying pele_platform/Examples/frag/ligands_water.sdf -> build/lib/pele_platform/Examples/frag
2021-12-19T05:11:33,016   copying pele_platform/Examples/frag/sequential.conf -> build/lib/pele_platform/Examples/frag
2021-12-19T05:11:33,021   creating build/lib/pele_platform/Examples/frag/analysis_data
2021-12-19T05:11:33,022   creating build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1
2021-12-19T05:11:33,023   creating build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2021-12-19T05:11:33,026   copying pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result/report_1 -> build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2021-12-19T05:11:33,031   copying pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result/report_2 -> build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2021-12-19T05:11:33,036   copying pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result/trajectory_1.pdb -> build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2021-12-19T05:11:33,132   copying pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result/trajectory_2.pdb -> build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2021-12-19T05:11:33,227   creating build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result
2021-12-19T05:11:33,230   copying pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result/epochsampling_result_trajectory_1.1_BindingEnergy-23.4636.pdb -> build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result
2021-12-19T05:11:33,282   copying pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result/epochsampling_result_trajectory_2.1_BindingEnergy-25.1634.pdb -> build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result
2021-12-19T05:11:33,333   creating build/lib/pele_platform/Examples/frag/checker
2021-12-19T05:11:33,335   copying pele_platform/Examples/frag/checker/4RFM_proc.pdb -> build/lib/pele_platform/Examples/frag/checker
2021-12-19T05:11:33,342   copying pele_platform/Examples/frag/checker/4RFM_series.sdf -> build/lib/pele_platform/Examples/frag/checker
2021-12-19T05:11:33,352   copying pele_platform/Examples/frag/checker/receptor.sdf -> build/lib/pele_platform/Examples/frag/checker
2021-12-19T05:11:33,383   creating build/lib/pele_platform/Examples/frag/pdb_test_lib
2021-12-19T05:11:33,386   copying pele_platform/Examples/frag/pdb_test_lib/mol1.pdb -> build/lib/pele_platform/Examples/frag/pdb_test_lib
2021-12-19T05:11:33,394   copying pele_platform/Examples/frag/pdb_test_lib/mol2.pdb -> build/lib/pele_platform/Examples/frag/pdb_test_lib
2021-12-19T05:11:33,402   creating build/lib/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:33,405   copying pele_platform/Examples/frag/sdf_joiner/13_serie.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:33,417   copying pele_platform/Examples/frag/sdf_joiner/4RFM_core_sc.pdb -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:33,467   copying pele_platform/Examples/frag/sdf_joiner/4RFM_proc.pdb -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:33,521   copying pele_platform/Examples/frag/sdf_joiner/4RFM_series.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:33,531   copying pele_platform/Examples/frag/sdf_joiner/core2.pdb -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:33,573   copying pele_platform/Examples/frag/sdf_joiner/core3.pdb -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:33,593   copying pele_platform/Examples/frag/sdf_joiner/frag.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:33,602   copying pele_platform/Examples/frag/sdf_joiner/frag.yml -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:33,609   copying pele_platform/Examples/frag/sdf_joiner/frag2.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:33,621   copying pele_platform/Examples/frag/sdf_joiner/frag2.yml -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:33,628   copying pele_platform/Examples/frag/sdf_joiner/frag3.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:33,639   copying pele_platform/Examples/frag/sdf_joiner/frag3.yml -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:33,646   copying pele_platform/Examples/frag/sdf_joiner/frag31.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:33,656   copying pele_platform/Examples/frag/sdf_joiner/frag4.yml -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:33,661   copying pele_platform/Examples/frag/sdf_joiner/frag5.yml -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:33,666   copying pele_platform/Examples/frag/sdf_joiner/glide-dockSARS_core.pdb -> build/lib/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:33,744   creating build/lib/pele_platform/Examples/frag/sdf_test_lib
2021-12-19T05:11:33,746   copying pele_platform/Examples/frag/sdf_test_lib/test_library.sdf -> build/lib/pele_platform/Examples/frag/sdf_test_lib
2021-12-19T05:11:33,752   creating build/lib/pele_platform/Examples/global
2021-12-19T05:11:33,755   copying pele_platform/Examples/global/input.yaml -> build/lib/pele_platform/Examples/global
2021-12-19T05:11:33,762   copying pele_platform/Examples/global/input_defaults.yaml -> build/lib/pele_platform/Examples/global
2021-12-19T05:11:33,768   copying pele_platform/Examples/global/input_inputs.yaml -> build/lib/pele_platform/Examples/global
2021-12-19T05:11:33,774   copying pele_platform/Examples/global/input_inputs_asterisc.yaml -> build/lib/pele_platform/Examples/global
2021-12-19T05:11:33,780   creating build/lib/pele_platform/Examples/gpcr
2021-12-19T05:11:33,783   copying pele_platform/Examples/gpcr/complex.pdb -> build/lib/pele_platform/Examples/gpcr
2021-12-19T05:11:33,828   copying pele_platform/Examples/gpcr/complex_processed.pdb -> build/lib/pele_platform/Examples/gpcr
2021-12-19T05:11:33,870   copying pele_platform/Examples/gpcr/input.yaml -> build/lib/pele_platform/Examples/gpcr
2021-12-19T05:11:33,876   copying pele_platform/Examples/gpcr/input_atom_error.yaml -> build/lib/pele_platform/Examples/gpcr
2021-12-19T05:11:33,882   copying pele_platform/Examples/gpcr/input_defaults.yaml -> build/lib/pele_platform/Examples/gpcr
2021-12-19T05:11:33,888   copying pele_platform/Examples/gpcr/input_defaults2.yaml -> build/lib/pele_platform/Examples/gpcr
2021-12-19T05:11:33,894   creating build/lib/pele_platform/Examples/induced_fit
2021-12-19T05:11:33,896   copying pele_platform/Examples/induced_fit/input_auto_clustering.yaml -> build/lib/pele_platform/Examples/induced_fit
2021-12-19T05:11:33,901   copying pele_platform/Examples/induced_fit/input_exhaustive.yaml -> build/lib/pele_platform/Examples/induced_fit
2021-12-19T05:11:33,906   copying pele_platform/Examples/induced_fit/input_exhaustive_defaults.yaml -> build/lib/pele_platform/Examples/induced_fit
2021-12-19T05:11:33,911   copying pele_platform/Examples/induced_fit/input_fast.yaml -> build/lib/pele_platform/Examples/induced_fit
2021-12-19T05:11:33,916   copying pele_platform/Examples/induced_fit/input_fast_defaults.yaml -> build/lib/pele_platform/Examples/induced_fit
2021-12-19T05:11:33,922   copying pele_platform/Examples/induced_fit/input_mae.yaml -> build/lib/pele_platform/Examples/induced_fit
2021-12-19T05:11:33,928   creating build/lib/pele_platform/Examples/inputs
2021-12-19T05:11:33,931   copying pele_platform/Examples/inputs/input.yaml -> build/lib/pele_platform/Examples/inputs
2021-12-19T05:11:33,938   copying pele_platform/Examples/inputs/mn4.sl -> build/lib/pele_platform/Examples/inputs
2021-12-19T05:11:33,944   copying pele_platform/Examples/inputs/nord3.sge -> build/lib/pele_platform/Examples/inputs
2021-12-19T05:11:33,951   creating build/lib/pele_platform/Examples/interaction_restrictions
2021-12-19T05:11:33,954   copying pele_platform/Examples/interaction_restrictions/complex.pdb -> build/lib/pele_platform/Examples/interaction_restrictions
2021-12-19T05:11:34,020   copying pele_platform/Examples/interaction_restrictions/input.yaml -> build/lib/pele_platform/Examples/interaction_restrictions
2021-12-19T05:11:34,027   copying pele_platform/Examples/interaction_restrictions/input_error.yaml -> build/lib/pele_platform/Examples/interaction_restrictions
2021-12-19T05:11:34,033   copying pele_platform/Examples/interaction_restrictions/input_error_2.yaml -> build/lib/pele_platform/Examples/interaction_restrictions
2021-12-19T05:11:34,039   creating build/lib/pele_platform/Examples/interaction_restrictions/out
2021-12-19T05:11:34,041   copying pele_platform/Examples/interaction_restrictions/out/expected_conditions.txt -> build/lib/pele_platform/Examples/interaction_restrictions/out
2021-12-19T05:11:34,046   copying pele_platform/Examples/interaction_restrictions/out/expected_metrics.txt -> build/lib/pele_platform/Examples/interaction_restrictions/out
2021-12-19T05:11:34,051   creating build/lib/pele_platform/Examples/ligand_conformations
2021-12-19T05:11:34,053   copying pele_platform/Examples/ligand_conformations/1.pdb -> build/lib/pele_platform/Examples/ligand_conformations
2021-12-19T05:11:34,058   copying pele_platform/Examples/ligand_conformations/2.pdb -> build/lib/pele_platform/Examples/ligand_conformations
2021-12-19T05:11:34,065   copying pele_platform/Examples/ligand_conformations/3.pdb -> build/lib/pele_platform/Examples/ligand_conformations
2021-12-19T05:11:34,072   copying pele_platform/Examples/ligand_conformations/input.yaml -> build/lib/pele_platform/Examples/ligand_conformations
2021-12-19T05:11:34,078   creating build/lib/pele_platform/Examples/minimum_steps
2021-12-19T05:11:34,080   copying pele_platform/Examples/minimum_steps/complex.pdb -> build/lib/pele_platform/Examples/minimum_steps
2021-12-19T05:11:34,146   copying pele_platform/Examples/minimum_steps/input.yaml -> build/lib/pele_platform/Examples/minimum_steps
2021-12-19T05:11:34,152   creating build/lib/pele_platform/Examples/out_in
2021-12-19T05:11:34,154   copying pele_platform/Examples/out_in/1_3ZON_complex.pdb -> build/lib/pele_platform/Examples/out_in
2021-12-19T05:11:34,196   copying pele_platform/Examples/out_in/input.yaml -> build/lib/pele_platform/Examples/out_in
2021-12-19T05:11:34,202   copying pele_platform/Examples/out_in/input_auto_clustering.yaml -> build/lib/pele_platform/Examples/out_in
2021-12-19T05:11:34,209   copying pele_platform/Examples/out_in/input_box_center.yaml -> build/lib/pele_platform/Examples/out_in
2021-12-19T05:11:34,215   copying pele_platform/Examples/out_in/input_default.yaml -> build/lib/pele_platform/Examples/out_in
2021-12-19T05:11:34,222   copying pele_platform/Examples/out_in/input_flag_error.yaml -> build/lib/pele_platform/Examples/out_in
2021-12-19T05:11:34,226   copying pele_platform/Examples/out_in/input_metrics.yaml -> build/lib/pele_platform/Examples/out_in
2021-12-19T05:11:34,231   creating build/lib/pele_platform/Examples/pca
2021-12-19T05:11:34,233   copying pele_platform/Examples/pca/1.pdb -> build/lib/pele_platform/Examples/pca
2021-12-19T05:11:34,274   copying pele_platform/Examples/pca/2.pdb -> build/lib/pele_platform/Examples/pca
2021-12-19T05:11:34,317   copying pele_platform/Examples/pca/3.pdb -> build/lib/pele_platform/Examples/pca
2021-12-19T05:11:34,361   copying pele_platform/Examples/pca/input.yaml -> build/lib/pele_platform/Examples/pca
2021-12-19T05:11:34,367   copying pele_platform/Examples/pca/input_str.yaml -> build/lib/pele_platform/Examples/pca
2021-12-19T05:11:34,374   creating build/lib/pele_platform/Examples/preparation
2021-12-19T05:11:34,376   copying pele_platform/Examples/preparation/6qmk_correct.pdb -> build/lib/pele_platform/Examples/preparation
2021-12-19T05:11:34,426   copying pele_platform/Examples/preparation/6qmk_repeated.pdb -> build/lib/pele_platform/Examples/preparation
2021-12-19T05:11:34,484   copying pele_platform/Examples/preparation/complex.pdb -> build/lib/pele_platform/Examples/preparation
2021-12-19T05:11:34,521   copying pele_platform/Examples/preparation/complex_2.pdb -> build/lib/pele_platform/Examples/preparation
2021-12-19T05:11:34,581   copying pele_platform/Examples/preparation/input.yaml -> build/lib/pele_platform/Examples/preparation
2021-12-19T05:11:34,587   copying pele_platform/Examples/preparation/input_nonstandard.yaml -> build/lib/pele_platform/Examples/preparation
2021-12-19T05:11:34,594   copying pele_platform/Examples/preparation/input_space.yaml -> build/lib/pele_platform/Examples/preparation
2021-12-19T05:11:34,601   copying pele_platform/Examples/preparation/parametrization_flags.yaml -> build/lib/pele_platform/Examples/preparation
2021-12-19T05:11:34,607   creating build/lib/pele_platform/Examples/production
2021-12-19T05:11:34,610   copying pele_platform/Examples/production/input.sl -> build/lib/pele_platform/Examples/production
2021-12-19T05:11:34,615   copying pele_platform/Examples/production/input_mae.yaml -> build/lib/pele_platform/Examples/production
2021-12-19T05:11:34,619   creating build/lib/pele_platform/Examples/randomize
2021-12-19T05:11:34,622   copying pele_platform/Examples/randomize/ligand1.pdb -> build/lib/pele_platform/Examples/randomize
2021-12-19T05:11:34,628   copying pele_platform/Examples/randomize/ligand2.pdb -> build/lib/pele_platform/Examples/randomize
2021-12-19T05:11:34,635   copying pele_platform/Examples/randomize/ligand3.pdb -> build/lib/pele_platform/Examples/randomize
2021-12-19T05:11:34,643   copying pele_platform/Examples/randomize/receptor.pdb -> build/lib/pele_platform/Examples/randomize
2021-12-19T05:11:34,691   copying pele_platform/Examples/randomize/ref_ligand.pdb -> build/lib/pele_platform/Examples/randomize
2021-12-19T05:11:34,699   creating build/lib/pele_platform/Examples/rescoring
2021-12-19T05:11:34,703   copying pele_platform/Examples/rescoring/input.yaml -> build/lib/pele_platform/Examples/rescoring
2021-12-19T05:11:34,712   copying pele_platform/Examples/rescoring/input_defaults.yaml -> build/lib/pele_platform/Examples/rescoring
2021-12-19T05:11:34,717   creating build/lib/pele_platform/Examples/restart
2021-12-19T05:11:34,720   copying pele_platform/Examples/restart/restart.yaml -> build/lib/pele_platform/Examples/restart
2021-12-19T05:11:34,726   creating build/lib/pele_platform/Examples/singularity
2021-12-19T05:11:34,729   copying pele_platform/Examples/singularity/input_adaptive.yaml -> build/lib/pele_platform/Examples/singularity
2021-12-19T05:11:34,735   copying pele_platform/Examples/singularity/input_adaptive_mpi_params.yaml -> build/lib/pele_platform/Examples/singularity
2021-12-19T05:11:34,741   copying pele_platform/Examples/singularity/input_frag.yaml -> build/lib/pele_platform/Examples/singularity
2021-12-19T05:11:34,747   creating build/lib/pele_platform/Examples/site_finder
2021-12-19T05:11:34,750   copying pele_platform/Examples/site_finder/complex.pdb -> build/lib/pele_platform/Examples/site_finder
2021-12-19T05:11:34,800   copying pele_platform/Examples/site_finder/global.yaml -> build/lib/pele_platform/Examples/site_finder
2021-12-19T05:11:34,808   copying pele_platform/Examples/site_finder/input_custom_box.yaml -> build/lib/pele_platform/Examples/site_finder
2021-12-19T05:11:34,815   copying pele_platform/Examples/site_finder/input_folder.yaml -> build/lib/pele_platform/Examples/site_finder
2021-12-19T05:11:34,820   copying pele_platform/Examples/site_finder/input_global.yaml -> build/lib/pele_platform/Examples/site_finder
2021-12-19T05:11:34,826   copying pele_platform/Examples/site_finder/input_global_xtc.yaml -> build/lib/pele_platform/Examples/site_finder
2021-12-19T05:11:34,832   copying pele_platform/Examples/site_finder/input_restart.yaml -> build/lib/pele_platform/Examples/site_finder
2021-12-19T05:11:34,840   copying pele_platform/Examples/site_finder/input_skipref.yaml -> build/lib/pele_platform/Examples/site_finder
2021-12-19T05:11:34,846   copying pele_platform/Examples/site_finder/local.yaml -> build/lib/pele_platform/Examples/site_finder
2021-12-19T05:11:34,853   creating build/lib/pele_platform/Examples/tutorials
2021-12-19T05:11:34,854   creating build/lib/pele_platform/Examples/tutorials/gpcr
2021-12-19T05:11:34,856   copying pele_platform/Examples/tutorials/gpcr/complex.pdb -> build/lib/pele_platform/Examples/tutorials/gpcr
2021-12-19T05:11:34,897   copying pele_platform/Examples/tutorials/gpcr/input.yaml -> build/lib/pele_platform/Examples/tutorials/gpcr
2021-12-19T05:11:34,902   creating build/lib/pele_platform/Examples/tutorials/induced_fit
2021-12-19T05:11:34,904   copying pele_platform/Examples/tutorials/induced_fit/docking.pdb -> build/lib/pele_platform/Examples/tutorials/induced_fit
2021-12-19T05:11:34,970   copying pele_platform/Examples/tutorials/induced_fit/input.yaml -> build/lib/pele_platform/Examples/tutorials/induced_fit
2021-12-19T05:11:34,975   creating build/lib/pele_platform/Examples/tutorials/ppi
2021-12-19T05:11:34,977   copying pele_platform/Examples/tutorials/ppi/4yy6_ligand.pdb -> build/lib/pele_platform/Examples/tutorials/ppi
2021-12-19T05:11:34,984   copying pele_platform/Examples/tutorials/ppi/4yy6_prep.pdb -> build/lib/pele_platform/Examples/tutorials/ppi
2021-12-19T05:11:35,008   copying pele_platform/Examples/tutorials/ppi/input.yaml -> build/lib/pele_platform/Examples/tutorials/ppi
2021-12-19T05:11:35,012   creating build/lib/pele_platform/Examples/water
2021-12-19T05:11:35,014   copying pele_platform/Examples/water/complex_induced.pdb -> build/lib/pele_platform/Examples/water
2021-12-19T05:11:35,035   copying pele_platform/Examples/water/complex_ref_LESSH2O.pdb -> build/lib/pele_platform/Examples/water
2021-12-19T05:11:35,083   copying pele_platform/Examples/water/input_all.yaml -> build/lib/pele_platform/Examples/water
2021-12-19T05:11:35,090   copying pele_platform/Examples/water/input_bs.yaml -> build/lib/pele_platform/Examples/water
2021-12-19T05:11:35,096   copying pele_platform/Examples/water/input_bs_defaults.yaml -> build/lib/pele_platform/Examples/water
2021-12-19T05:11:35,101   copying pele_platform/Examples/water/input_induced.yaml -> build/lib/pele_platform/Examples/water
2021-12-19T05:11:35,106   copying pele_platform/Examples/water/input_lig.yaml -> build/lib/pele_platform/Examples/water
2021-12-19T05:11:35,111   copying pele_platform/Examples/water/input_lig_defaults.yaml -> build/lib/pele_platform/Examples/water
2021-12-19T05:11:35,116   copying pele_platform/Examples/water/input_nwaters.yaml -> build/lib/pele_platform/Examples/water
2021-12-19T05:11:35,120   copying pele_platform/Examples/water/input_previous_water.yaml -> build/lib/pele_platform/Examples/water
2021-12-19T05:11:35,125   copying pele_platform/Examples/water/water2_pele.conf -> build/lib/pele_platform/Examples/water
2021-12-19T05:11:35,130   copying pele_platform/Examples/water/water_pele.conf -> build/lib/pele_platform/Examples/water
2021-12-19T05:11:35,137   copying pele_platform/Examples/water/water_processed.pdb -> build/lib/pele_platform/Examples/water
2021-12-19T05:11:35,188   creating build/lib/pele_platform/Templates
2021-12-19T05:11:35,191   copying pele_platform/Templates/pele_template.conf -> build/lib/pele_platform/Templates
2021-12-19T05:11:35,198   copying pele_platform/Templates/solventParamsHCTOBC.txt -> build/lib/pele_platform/Templates
2021-12-19T05:11:35,210   copying pele_platform/Templates/template_adaptive.conf -> build/lib/pele_platform/Templates
2021-12-19T05:11:35,254   UPDATING build/lib/pele_platform/_version.py
2021-12-19T05:11:35,257   set build/lib/pele_platform/_version.py to '1.6.2'
2021-12-19T05:11:35,265   installing to build/bdist.linux-armv7l/wheel
2021-12-19T05:11:35,265   running install
2021-12-19T05:11:35,267   running install_lib
2021-12-19T05:11:35,275   creating build/bdist.linux-armv7l
2021-12-19T05:11:35,276   creating build/bdist.linux-armv7l/wheel
2021-12-19T05:11:35,280   creating build/bdist.linux-armv7l/wheel/pele_platform
2021-12-19T05:11:35,285   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples
2021-12-19T05:11:35,288   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2021-12-19T05:11:35,291   copying build/lib/pele_platform/Examples/induced_fit/input_auto_clustering.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2021-12-19T05:11:35,295   copying build/lib/pele_platform/Examples/induced_fit/input_fast_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2021-12-19T05:11:35,298   copying build/lib/pele_platform/Examples/induced_fit/input_fast.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2021-12-19T05:11:35,304   copying build/lib/pele_platform/Examples/induced_fit/input_exhaustive.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2021-12-19T05:11:35,309   copying build/lib/pele_platform/Examples/induced_fit/input_exhaustive_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2021-12-19T05:11:35,315   copying build/lib/pele_platform/Examples/induced_fit/input_mae.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2021-12-19T05:11:35,321   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/box
2021-12-19T05:11:35,323   copying build/lib/pele_platform/Examples/box/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/box
2021-12-19T05:11:35,328   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions
2021-12-19T05:11:35,330   copying build/lib/pele_platform/Examples/interaction_restrictions/input_error.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions
2021-12-19T05:11:35,335   copying build/lib/pele_platform/Examples/interaction_restrictions/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions
2021-12-19T05:11:35,339   copying build/lib/pele_platform/Examples/interaction_restrictions/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions
2021-12-19T05:11:35,403   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions/out
2021-12-19T05:11:35,405   copying build/lib/pele_platform/Examples/interaction_restrictions/out/expected_metrics.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions/out
2021-12-19T05:11:35,409   copying build/lib/pele_platform/Examples/interaction_restrictions/out/expected_conditions.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions/out
2021-12-19T05:11:35,413   copying build/lib/pele_platform/Examples/interaction_restrictions/input_error_2.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions
2021-12-19T05:11:35,418   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/bias
2021-12-19T05:11:35,420   copying build/lib/pele_platform/Examples/bias/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/bias
2021-12-19T05:11:35,424   copying build/lib/pele_platform/Examples/bias/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/bias
2021-12-19T05:11:35,460   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2021-12-19T05:11:35,462   copying build/lib/pele_platform/Examples/covalent_docking/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2021-12-19T05:11:35,468   copying build/lib/pele_platform/Examples/covalent_docking/6M06_prepared.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2021-12-19T05:11:35,519   copying build/lib/pele_platform/Examples/covalent_docking/input_defaults_refinement.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2021-12-19T05:11:35,524   copying build/lib/pele_platform/Examples/covalent_docking/6P0M_prepared.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2021-12-19T05:11:35,560   copying build/lib/pele_platform/Examples/covalent_docking/input1.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2021-12-19T05:11:35,565   copying build/lib/pele_platform/Examples/covalent_docking/input3.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2021-12-19T05:11:35,570   copying build/lib/pele_platform/Examples/covalent_docking/input2.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2021-12-19T05:11:35,576   copying build/lib/pele_platform/Examples/covalent_docking/5XXD_prepared.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2021-12-19T05:11:35,636   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/restart
2021-12-19T05:11:35,637   copying build/lib/pele_platform/Examples/restart/restart.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/restart
2021-12-19T05:11:35,643   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
2021-12-19T05:11:35,645   copying build/lib/pele_platform/Examples/analysis/input_flags.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
2021-12-19T05:11:35,651   copying build/lib/pele_platform/Examples/analysis/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
2021-12-19T05:11:35,657   copying build/lib/pele_platform/Examples/analysis/input_flags0.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
2021-12-19T05:11:35,662   copying build/lib/pele_platform/Examples/analysis/input_xtc.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
2021-12-19T05:11:35,669   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-12-19T05:11:35,671   copying build/lib/pele_platform/Examples/analysis/data/input_flags.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-12-19T05:11:35,677   copying build/lib/pele_platform/Examples/analysis/data/pele.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-12-19T05:11:35,683   copying build/lib/pele_platform/Examples/analysis/data/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-12-19T05:11:35,687   copying build/lib/pele_platform/Examples/analysis/data/MG.rot.assign -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-12-19T05:11:35,691   copying build/lib/pele_platform/Examples/analysis/data/mgz -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-12-19T05:11:35,694   copying build/lib/pele_platform/Examples/analysis/data/input_flags0.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-12-19T05:11:35,699   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc
2021-12-19T05:11:35,702   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/0
2021-12-19T05:11:35,704   copying build/lib/pele_platform/Examples/analysis/data/xtc/0/trajectory_1.xtc -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/0
2021-12-19T05:11:35,711   copying build/lib/pele_platform/Examples/analysis/data/xtc/0/trajectory_2.xtc -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/0
2021-12-19T05:11:35,718   copying build/lib/pele_platform/Examples/analysis/data/xtc/0/report_2 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/0
2021-12-19T05:11:35,724   copying build/lib/pele_platform/Examples/analysis/data/xtc/0/report_1 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/0
2021-12-19T05:11:35,731   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/topologies
2021-12-19T05:11:35,733   copying build/lib/pele_platform/Examples/analysis/data/xtc/topologies/topology_0.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/topologies
2021-12-19T05:11:35,748   copying build/lib/pele_platform/Examples/analysis/data/xtc/summary.csv -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc
2021-12-19T05:11:35,753   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/inputs
2021-12-19T05:11:35,755   copying build/lib/pele_platform/Examples/analysis/data/inputs/input1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/inputs
2021-12-19T05:11:35,793   copying build/lib/pele_platform/Examples/analysis/data/inputs/input3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/inputs
2021-12-19T05:11:35,833   copying build/lib/pele_platform/Examples/analysis/data/inputs/input2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/inputs
2021-12-19T05:11:35,873   copying build/lib/pele_platform/Examples/analysis/data/adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-12-19T05:11:35,878   copying build/lib/pele_platform/Examples/analysis/data/strz -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-12-19T05:11:35,884   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output
2021-12-19T05:11:35,888   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0
2021-12-19T05:11:35,891   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0/clustering
2021-12-19T05:11:35,893   copying build/lib/pele_platform/Examples/analysis/data/output/0/clustering/summary.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0/clustering
2021-12-19T05:11:35,898   copying build/lib/pele_platform/Examples/analysis/data/output/0/clustering/object.pkl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0/clustering
2021-12-19T05:11:35,935   copying build/lib/pele_platform/Examples/analysis/data/output/0/topologyMapping.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0
2021-12-19T05:11:35,940   copying build/lib/pele_platform/Examples/analysis/data/output/0/trajectory_1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0
2021-12-19T05:11:35,978   copying build/lib/pele_platform/Examples/analysis/data/output/0/report_1 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0
2021-12-19T05:11:35,983   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/synchronization
2021-12-19T05:11:35,984   copying build/lib/pele_platform/Examples/analysis/data/output/synchronization/syncFile.lock -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/synchronization
2021-12-19T05:11:35,991   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/topologies
2021-12-19T05:11:35,994   copying build/lib/pele_platform/Examples/analysis/data/output/topologies/topology_0.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/topologies
2021-12-19T05:11:36,032   copying build/lib/pele_platform/Examples/analysis/data/output/topologies/topologies.pkl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/topologies
2021-12-19T05:11:36,064   copying build/lib/pele_platform/Examples/analysis/data/output/originalControlFile.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output
2021-12-19T05:11:36,070   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/empty_reports_output
2021-12-19T05:11:36,074   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-12-19T05:11:36,077   copying build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0/topologyMapping.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-12-19T05:11:36,083   copying build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0/trajectory_1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-12-19T05:11:36,125   copying build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0/report_2 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-12-19T05:11:36,129   copying build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0/trajectory_2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-12-19T05:11:36,246   copying build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0/report_1 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/empty_reports_output/0
2021-12-19T05:11:36,253   copying build/lib/pele_platform/Examples/analysis/data/STR.rot.assign -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-12-19T05:11:36,258   copying build/lib/pele_platform/Examples/analysis/data/input_mae.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2021-12-19T05:11:36,268   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-12-19T05:11:36,272   copying build/lib/pele_platform/Examples/checker/input_underscore.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-12-19T05:11:36,277   copying build/lib/pele_platform/Examples/checker/mapping_complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-12-19T05:11:36,339   copying build/lib/pele_platform/Examples/checker/input_tab.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-12-19T05:11:36,344   copying build/lib/pele_platform/Examples/checker/capped.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-12-19T05:11:36,478   copying build/lib/pele_platform/Examples/checker/capped_no_connects.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-12-19T05:11:36,615   copying build/lib/pele_platform/Examples/checker/input_map_atom_str.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-12-19T05:11:36,619   copying build/lib/pele_platform/Examples/checker/multiple_simulations.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-12-19T05:11:36,622   copying build/lib/pele_platform/Examples/checker/input_rotamer.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-12-19T05:11:36,626   copying build/lib/pele_platform/Examples/checker/input_unk.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-12-19T05:11:36,630   copying build/lib/pele_platform/Examples/checker/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-12-19T05:11:36,634   copying build/lib/pele_platform/Examples/checker/incompatible_flags.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-12-19T05:11:36,639   copying build/lib/pele_platform/Examples/checker/complex2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-12-19T05:11:36,665   copying build/lib/pele_platform/Examples/checker/input_template.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-12-19T05:11:36,672   copying build/lib/pele_platform/Examples/checker/input_pele_exec.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-12-19T05:11:36,677   copying build/lib/pele_platform/Examples/checker/negative_residues.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-12-19T05:11:36,683   copying build/lib/pele_platform/Examples/checker/input_env.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-12-19T05:11:36,687   copying build/lib/pele_platform/Examples/checker/input_map_atom_num.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-12-19T05:11:36,692   copying build/lib/pele_platform/Examples/checker/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-12-19T05:11:36,738   copying build/lib/pele_platform/Examples/checker/complex_unk.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-12-19T05:11:36,802   copying build/lib/pele_platform/Examples/checker/input_atom_string.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-12-19T05:11:36,807   copying build/lib/pele_platform/Examples/checker/ligand2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-12-19T05:11:36,814   copying build/lib/pele_platform/Examples/checker/input_space.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2021-12-19T05:11:36,820   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
2021-12-19T05:11:36,822   copying build/lib/pele_platform/Examples/global/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
2021-12-19T05:11:36,826   copying build/lib/pele_platform/Examples/global/input_inputs_asterisc.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
2021-12-19T05:11:36,830   copying build/lib/pele_platform/Examples/global/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
2021-12-19T05:11:36,834   copying build/lib/pele_platform/Examples/global/input_inputs.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
2021-12-19T05:11:36,840   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit_soft
2021-12-19T05:11:36,842   copying build/lib/pele_platform/Examples/exit_soft/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit_soft
2021-12-19T05:11:36,848   copying build/lib/pele_platform/Examples/exit_soft/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit_soft
2021-12-19T05:11:36,857   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-12-19T05:11:36,859   copying build/lib/pele_platform/Examples/constraints/input_metals.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-12-19T05:11:36,864   copying build/lib/pele_platform/Examples/constraints/input_constrain_smarts.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-12-19T05:11:36,868   copying build/lib/pele_platform/Examples/constraints/no_connects.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-12-19T05:11:36,872   copying build/lib/pele_platform/Examples/constraints/input_smiles_error.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-12-19T05:11:36,876   copying build/lib/pele_platform/Examples/constraints/input_permissive_exception.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-12-19T05:11:36,881   copying build/lib/pele_platform/Examples/constraints/input_external_constraints.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-12-19T05:11:36,886   copying build/lib/pele_platform/Examples/constraints/pass_input_permissive_constraints.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-12-19T05:11:36,891   copying build/lib/pele_platform/Examples/constraints/input_ca_noppp.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-12-19T05:11:36,897   copying build/lib/pele_platform/Examples/constraints/input_square_planar_polarisation.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-12-19T05:11:36,902   copying build/lib/pele_platform/Examples/constraints/ca_constraints.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-12-19T05:11:36,966   copying build/lib/pele_platform/Examples/constraints/input_k.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-12-19T05:11:36,971   copying build/lib/pele_platform/Examples/constraints/input_constrain_smiles.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-12-19T05:11:36,977   copying build/lib/pele_platform/Examples/constraints/4l3a_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-12-19T05:11:37,031   copying build/lib/pele_platform/Examples/constraints/input_ignore.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-12-19T05:11:37,036   copying build/lib/pele_platform/Examples/constraints/input_tetrahedral.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-12-19T05:11:37,042   copying build/lib/pele_platform/Examples/constraints/4w4o_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-12-19T05:11:37,075   copying build/lib/pele_platform/Examples/constraints/input_square_planar.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-12-19T05:11:37,081   copying build/lib/pele_platform/Examples/constraints/fail_input_permissive_constraints.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-12-19T05:11:37,086   copying build/lib/pele_platform/Examples/constraints/input_no_metal_constraints.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-12-19T05:11:37,092   copying build/lib/pele_platform/Examples/constraints/4qnr_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-12-19T05:11:37,144   copying build/lib/pele_platform/Examples/constraints/4zu9_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-12-19T05:11:37,258   copying build/lib/pele_platform/Examples/constraints/4w5i_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-12-19T05:11:37,292   copying build/lib/pele_platform/Examples/constraints/input_all_metal_constraints.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-12-19T05:11:37,297   copying build/lib/pele_platform/Examples/constraints/1zop.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-12-19T05:11:37,328   copying build/lib/pele_platform/Examples/constraints/input_ca_ppp.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-12-19T05:11:37,333   copying build/lib/pele_platform/Examples/constraints/complex_smiles_error.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2021-12-19T05:11:37,377   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2021-12-19T05:11:37,379   copying build/lib/pele_platform/Examples/site_finder/input_skipref.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2021-12-19T05:11:37,385   copying build/lib/pele_platform/Examples/site_finder/input_restart.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2021-12-19T05:11:37,390   copying build/lib/pele_platform/Examples/site_finder/input_custom_box.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2021-12-19T05:11:37,395   copying build/lib/pele_platform/Examples/site_finder/local.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2021-12-19T05:11:37,399   copying build/lib/pele_platform/Examples/site_finder/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2021-12-19T05:11:37,444   copying build/lib/pele_platform/Examples/site_finder/global.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2021-12-19T05:11:37,449   copying build/lib/pele_platform/Examples/site_finder/input_global.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2021-12-19T05:11:37,454   copying build/lib/pele_platform/Examples/site_finder/input_folder.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2021-12-19T05:11:37,460   copying build/lib/pele_platform/Examples/site_finder/input_global_xtc.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2021-12-19T05:11:37,467   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/minimum_steps
2021-12-19T05:11:37,469   copying build/lib/pele_platform/Examples/minimum_steps/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/minimum_steps
2021-12-19T05:11:37,474   copying build/lib/pele_platform/Examples/minimum_steps/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/minimum_steps
2021-12-19T05:11:37,538   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/production
2021-12-19T05:11:37,540   copying build/lib/pele_platform/Examples/production/input.sl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/production
2021-12-19T05:11:37,544   copying build/lib/pele_platform/Examples/production/input_mae.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/production
2021-12-19T05:11:37,549   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials
2021-12-19T05:11:37,552   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/induced_fit
2021-12-19T05:11:37,555   copying build/lib/pele_platform/Examples/tutorials/induced_fit/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/induced_fit
2021-12-19T05:11:37,561   copying build/lib/pele_platform/Examples/tutorials/induced_fit/docking.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/induced_fit
2021-12-19T05:11:37,628   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/ppi
2021-12-19T05:11:37,630   copying build/lib/pele_platform/Examples/tutorials/ppi/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/ppi
2021-12-19T05:11:37,635   copying build/lib/pele_platform/Examples/tutorials/ppi/4yy6_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/ppi
2021-12-19T05:11:37,660   copying build/lib/pele_platform/Examples/tutorials/ppi/4yy6_ligand.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/ppi
2021-12-19T05:11:37,666   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/gpcr
2021-12-19T05:11:37,668   copying build/lib/pele_platform/Examples/tutorials/gpcr/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/gpcr
2021-12-19T05:11:37,672   copying build/lib/pele_platform/Examples/tutorials/gpcr/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/gpcr
2021-12-19T05:11:37,713   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/singularity
2021-12-19T05:11:37,715   copying build/lib/pele_platform/Examples/singularity/input_frag.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/singularity
2021-12-19T05:11:37,720   copying build/lib/pele_platform/Examples/singularity/input_adaptive_mpi_params.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/singularity
2021-12-19T05:11:37,725   copying build/lib/pele_platform/Examples/singularity/input_adaptive.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/singularity
2021-12-19T05:11:37,733   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering
2021-12-19T05:11:37,737   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-12-19T05:11:37,739   copying build/lib/pele_platform/Examples/clustering/0/trajectory_4.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-12-19T05:11:37,807   copying build/lib/pele_platform/Examples/clustering/0/trajectory_3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-12-19T05:11:37,888   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0/clustering
2021-12-19T05:11:37,890   copying build/lib/pele_platform/Examples/clustering/0/clustering/summary.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0/clustering
2021-12-19T05:11:37,897   copying build/lib/pele_platform/Examples/clustering/0/clustering/object.pkl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0/clustering
2021-12-19T05:11:38,129   copying build/lib/pele_platform/Examples/clustering/0/report_3 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-12-19T05:11:38,136   copying build/lib/pele_platform/Examples/clustering/0/topologyMapping.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-12-19T05:11:38,143   copying build/lib/pele_platform/Examples/clustering/0/trajectory_1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-12-19T05:11:38,209   copying build/lib/pele_platform/Examples/clustering/0/report_4 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-12-19T05:11:38,213   copying build/lib/pele_platform/Examples/clustering/0/report_2 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-12-19T05:11:38,216   copying build/lib/pele_platform/Examples/clustering/0/trajectory_2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-12-19T05:11:38,254   copying build/lib/pele_platform/Examples/clustering/0/report_1 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2021-12-19T05:11:38,259   copying build/lib/pele_platform/Examples/clustering/summary.csv -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering
2021-12-19T05:11:38,266   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/inputs
2021-12-19T05:11:38,268   copying build/lib/pele_platform/Examples/inputs/nord3.sge -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/inputs
2021-12-19T05:11:38,274   copying build/lib/pele_platform/Examples/inputs/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/inputs
2021-12-19T05:11:38,279   copying build/lib/pele_platform/Examples/inputs/mn4.sl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/inputs
2021-12-19T05:11:38,287   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/rescoring
2021-12-19T05:11:38,289   copying build/lib/pele_platform/Examples/rescoring/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/rescoring
2021-12-19T05:11:38,295   copying build/lib/pele_platform/Examples/rescoring/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/rescoring
2021-12-19T05:11:38,302   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2021-12-19T05:11:38,304   copying build/lib/pele_platform/Examples/Msm/PR_1A28_protein.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2021-12-19T05:11:38,341   copying build/lib/pele_platform/Examples/Msm/AS4_INIT.mae -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2021-12-19T05:11:38,348   copying build/lib/pele_platform/Examples/Msm/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2021-12-19T05:11:38,353   copying build/lib/pele_platform/Examples/Msm/PR_1A28_xray_-_minimized.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2021-12-19T05:11:38,391   copying build/lib/pele_platform/Examples/Msm/PR_AS4.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2021-12-19T05:11:38,428   copying build/lib/pele_platform/Examples/Msm/PR_1A28_xray_-_minimized_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2021-12-19T05:11:38,467   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2021-12-19T05:11:38,470   copying build/lib/pele_platform/Examples/pca/3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2021-12-19T05:11:38,513   copying build/lib/pele_platform/Examples/pca/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2021-12-19T05:11:38,518   copying build/lib/pele_platform/Examples/pca/2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2021-12-19T05:11:38,561   copying build/lib/pele_platform/Examples/pca/1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2021-12-19T05:11:38,603   copying build/lib/pele_platform/Examples/pca/input_str.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2021-12-19T05:11:38,612   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-12-19T05:11:38,615   copying build/lib/pele_platform/Examples/frag/input_lib_pdb.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-12-19T05:11:38,620   copying build/lib/pele_platform/Examples/frag/input_symmetry.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-12-19T05:11:38,625   copying build/lib/pele_platform/Examples/frag/input_sim.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-12-19T05:11:38,630   copying build/lib/pele_platform/Examples/frag/input_frag_waters.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-12-19T05:11:38,636   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data
2021-12-19T05:11:38,640   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1
2021-12-19T05:11:38,645   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2021-12-19T05:11:38,648   copying build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result/trajectory_1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2021-12-19T05:11:38,739   copying build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result/report_2 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2021-12-19T05:11:38,746   copying build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result/trajectory_2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2021-12-19T05:11:38,839   copying build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result/report_1 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2021-12-19T05:11:38,848   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result
2021-12-19T05:11:38,852   copying build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result/epochsampling_result_trajectory_1.1_BindingEnergy-23.4636.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result
2021-12-19T05:11:38,902   copying build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result/epochsampling_result_trajectory_2.1_BindingEnergy-25.1634.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result
2021-12-19T05:11:38,953   copying build/lib/pele_platform/Examples/frag/input_flags.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-12-19T05:11:38,960   copying build/lib/pele_platform/Examples/frag/1w7h_preparation_structure_2w_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-12-19T05:11:39,013   copying build/lib/pele_platform/Examples/frag/sequential.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-12-19T05:11:39,020   copying build/lib/pele_platform/Examples/frag/input_core_sdf.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-12-19T05:11:39,028   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/checker
2021-12-19T05:11:39,033   copying build/lib/pele_platform/Examples/frag/checker/4RFM_series.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/checker
2021-12-19T05:11:39,039   copying build/lib/pele_platform/Examples/frag/checker/4RFM_proc.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/checker
2021-12-19T05:11:39,044   copying build/lib/pele_platform/Examples/frag/checker/receptor.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/checker
2021-12-19T05:11:39,074   copying build/lib/pele_platform/Examples/frag/1w7h_preparation_structure_2w.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-12-19T05:11:39,126   copying build/lib/pele_platform/Examples/frag/input_point_analysis.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-12-19T05:11:39,134   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:39,136   copying build/lib/pele_platform/Examples/frag/sdf_joiner/4RFM_core_sc.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:39,188   copying build/lib/pele_platform/Examples/frag/sdf_joiner/13_serie.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:39,201   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag3.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:39,212   copying build/lib/pele_platform/Examples/frag/sdf_joiner/glide-dockSARS_core.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:39,288   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag2.yml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:39,293   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag3.yml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:39,299   copying build/lib/pele_platform/Examples/frag/sdf_joiner/core3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:39,319   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag.yml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:39,324   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:39,332   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag2.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:39,343   copying build/lib/pele_platform/Examples/frag/sdf_joiner/4RFM_series.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:39,351   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag31.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:39,360   copying build/lib/pele_platform/Examples/frag/sdf_joiner/4RFM_proc.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:39,409   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag4.yml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:39,414   copying build/lib/pele_platform/Examples/frag/sdf_joiner/core2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:39,454   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag5.yml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2021-12-19T05:11:39,460   copying build/lib/pele_platform/Examples/frag/input_lib_sdf.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-12-19T05:11:39,465   copying build/lib/pele_platform/Examples/frag/input_core.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-12-19T05:11:39,472   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/pdb_test_lib
2021-12-19T05:11:39,475   copying build/lib/pele_platform/Examples/frag/pdb_test_lib/mol2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/pdb_test_lib
2021-12-19T05:11:39,481   copying build/lib/pele_platform/Examples/frag/pdb_test_lib/mol1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/pdb_test_lib
2021-12-19T05:11:39,485   copying build/lib/pele_platform/Examples/frag/amino.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-12-19T05:11:39,489   copying build/lib/pele_platform/Examples/frag/ligands_water.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-12-19T05:11:39,494   copying build/lib/pele_platform/Examples/frag/analysis.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-12-19T05:11:39,498   copying build/lib/pele_platform/Examples/frag/input_sim_xtc.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-12-19T05:11:39,504   copying build/lib/pele_platform/Examples/frag/input_ai.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-12-19T05:11:39,509   copying build/lib/pele_platform/Examples/frag/flags.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-12-19T05:11:39,516   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_test_lib
2021-12-19T05:11:39,519   copying build/lib/pele_platform/Examples/frag/sdf_test_lib/test_library.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_test_lib
2021-12-19T05:11:39,524   copying build/lib/pele_platform/Examples/frag/1dyi_waters.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-12-19T05:11:39,549   copying build/lib/pele_platform/Examples/frag/input_fragment_atom.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-12-19T05:11:39,555   copying build/lib/pele_platform/Examples/frag/ligands.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-12-19T05:11:39,561   copying build/lib/pele_platform/Examples/frag/1dyi_no_waters.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-12-19T05:11:39,586   copying build/lib/pele_platform/Examples/frag/core.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2021-12-19T05:11:39,590   copying build/lib/pele_platform/Examples/test.sl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples
2021-12-19T05:11:39,595   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2021-12-19T05:11:39,597   copying build/lib/pele_platform/Examples/RNA/5C45_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2021-12-19T05:11:39,637   copying build/lib/pele_platform/Examples/RNA/input_induced.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2021-12-19T05:11:39,641   copying build/lib/pele_platform/Examples/RNA/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2021-12-19T05:11:39,646   copying build/lib/pele_platform/Examples/RNA/2l94.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2021-12-19T05:11:39,652   copying build/lib/pele_platform/Examples/RNA/5C45_prep_proc.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2021-12-19T05:11:39,696   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2021-12-19T05:11:39,698   copying build/lib/pele_platform/Examples/Adaptive/test.sl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2021-12-19T05:11:39,704   copying build/lib/pele_platform/Examples/Adaptive/adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2021-12-19T05:11:39,709   copying build/lib/pele_platform/Examples/Adaptive/pele_file_4Adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2021-12-19T05:11:39,716   copying build/lib/pele_platform/Examples/Adaptive/strz -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2021-12-19T05:11:39,726   copying build/lib/pele_platform/Examples/Adaptive/STR.rot.assign -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2021-12-19T05:11:39,731   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit
2021-12-19T05:11:39,732   copying build/lib/pele_platform/Examples/exit/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit
2021-12-19T05:11:39,737   copying build/lib/pele_platform/Examples/exit/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit
2021-12-19T05:11:39,742   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2021-12-19T05:11:39,743   copying build/lib/pele_platform/Examples/out_in/input_auto_clustering.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2021-12-19T05:11:39,749   copying build/lib/pele_platform/Examples/out_in/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2021-12-19T05:11:39,754   copying build/lib/pele_platform/Examples/out_in/input_default.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2021-12-19T05:11:39,759   copying build/lib/pele_platform/Examples/out_in/1_3ZON_complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2021-12-19T05:11:39,798   copying build/lib/pele_platform/Examples/out_in/input_box_center.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2021-12-19T05:11:39,804   copying build/lib/pele_platform/Examples/out_in/input_flag_error.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2021-12-19T05:11:39,809   copying build/lib/pele_platform/Examples/out_in/input_metrics.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2021-12-19T05:11:39,816   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/randomize
2021-12-19T05:11:39,818   copying build/lib/pele_platform/Examples/randomize/receptor.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/randomize
2021-12-19T05:11:39,865   copying build/lib/pele_platform/Examples/randomize/ligand1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/randomize
2021-12-19T05:11:39,871   copying build/lib/pele_platform/Examples/randomize/ligand2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/randomize
2021-12-19T05:11:39,876   copying build/lib/pele_platform/Examples/randomize/ref_ligand.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/randomize
2021-12-19T05:11:39,882   copying build/lib/pele_platform/Examples/randomize/ligand3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/randomize
2021-12-19T05:11:39,888   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2021-12-19T05:11:39,890   copying build/lib/pele_platform/Examples/preparation/complex_2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2021-12-19T05:11:39,948   copying build/lib/pele_platform/Examples/preparation/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2021-12-19T05:11:39,953   copying build/lib/pele_platform/Examples/preparation/parametrization_flags.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2021-12-19T05:11:39,959   copying build/lib/pele_platform/Examples/preparation/input_nonstandard.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2021-12-19T05:11:39,965   copying build/lib/pele_platform/Examples/preparation/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2021-12-19T05:11:40,001   copying build/lib/pele_platform/Examples/preparation/6qmk_correct.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2021-12-19T05:11:40,048   copying build/lib/pele_platform/Examples/preparation/6qmk_repeated.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2021-12-19T05:11:40,102   copying build/lib/pele_platform/Examples/preparation/input_space.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2021-12-19T05:11:40,107   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering
2021-12-19T05:11:40,110   copying build/lib/pele_platform/Examples/enzyme_engineering/restart_saturated_mutagenesis.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering
2021-12-19T05:11:40,116   copying build/lib/pele_platform/Examples/enzyme_engineering/wrong_cpus.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering
2021-12-19T05:11:40,122   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/pdb_files
2021-12-19T05:11:40,125   copying build/lib/pele_platform/Examples/enzyme_engineering/pdb_files/T454D.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/pdb_files
2021-12-19T05:11:40,185   copying build/lib/pele_platform/Examples/enzyme_engineering/pdb_files/T454A.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/pdb_files
2021-12-19T05:11:40,245   copying build/lib/pele_platform/Examples/enzyme_engineering/pdb_files/T454E.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/pdb_files
2021-12-19T05:11:40,306   copying build/lib/pele_platform/Examples/enzyme_engineering/saturated_mutagenesis.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering
2021-12-19T05:11:40,312   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart
2021-12-19T05:11:40,316   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-12-19T05:11:40,321   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/ANL.mae -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-12-19T05:11:40,328   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/restart_saturated_mutagenesis.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-12-19T05:11:40,335   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/pele.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-12-19T05:11:40,342   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-12-19T05:11:40,344   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454A_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-12-19T05:11:40,402   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/ligand.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-12-19T05:11:40,406   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/receptor.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-12-19T05:11:40,464   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454D.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-12-19T05:11:40,522   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454D_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-12-19T05:11:40,580   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454A.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2021-12-19T05:11:40,639   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2021-12-19T05:11:40,646   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output
2021-12-19T05:11:40,651   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0
2021-12-19T05:11:40,655   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering
2021-12-19T05:11:40,658   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering/summary.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering
2021-12-19T05:11:40,663   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering/object.pkl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering
2021-12-19T05:11:40,667   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/topologyMapping.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0
2021-12-19T05:11:40,672   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/synchronization
2021-12-19T05:11:40,674   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/synchronization/syncFile.lock -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/synchronization
2021-12-19T05:11:40,682   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2021-12-19T05:11:40,684   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies/topology_0.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2021-12-19T05:11:40,746   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies/topologies.pkl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2021-12-19T05:11:40,847   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies/topology_1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2021-12-19T05:11:40,908   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-12-19T05:11:40,911   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/trajectory_3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-12-19T05:11:41,027   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/report_3 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-12-19T05:11:41,031   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/trajectory_1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-12-19T05:11:41,143   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/report_1 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2021-12-19T05:11:41,149   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/originalControlFile.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output
2021-12-19T05:11:41,156   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-12-19T05:11:41,159   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/trajectory_4.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-12-19T05:11:41,277   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/report_4 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-12-19T05:11:41,282   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/report_2 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-12-19T05:11:41,289   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/trajectory_2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2021-12-19T05:11:41,409   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal
2021-12-19T05:11:41,413   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/LigandRotamerLibs
2021-12-19T05:11:41,416   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/LigandRotamerLibs/ANL.rot.assign -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/LigandRotamerLibs
2021-12-19T05:11:41,423   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates
2021-12-19T05:11:41,427   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005
2021-12-19T05:11:41,430   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005/HeteroAtoms
2021-12-19T05:11:41,432   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005/HeteroAtoms/anlz -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005/HeteroAtoms
2021-12-19T05:11:41,439   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2021-12-19T05:11:41,441   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output/controlFile0.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2021-12-19T05:11:41,448   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output/initial_0_1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2021-12-19T05:11:41,510   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output/initial_0_0.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2021-12-19T05:11:41,572   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/completed_mutations.log -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart
2021-12-19T05:11:41,579   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-12-19T05:11:41,581   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/ANL.mae -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-12-19T05:11:41,587   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/restart_saturated_mutagenesis.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-12-19T05:11:41,592   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/pele.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-12-19T05:11:41,599   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-12-19T05:11:41,602   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/ligand.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-12-19T05:11:41,608   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/receptor.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-12-19T05:11:41,667   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/T454E_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-12-19T05:11:41,729   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/T454E.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2021-12-19T05:11:41,791   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2021-12-19T05:11:41,798   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2021-12-19T05:11:41,801   copying build/lib/pele_platform/Examples/gpcr/input_atom_error.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2021-12-19T05:11:41,807   copying build/lib/pele_platform/Examples/gpcr/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2021-12-19T05:11:41,811   copying build/lib/pele_platform/Examples/gpcr/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2021-12-19T05:11:41,815   copying build/lib/pele_platform/Examples/gpcr/input_defaults2.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2021-12-19T05:11:41,819   copying build/lib/pele_platform/Examples/gpcr/complex_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2021-12-19T05:11:41,860   copying build/lib/pele_platform/Examples/gpcr/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2021-12-19T05:11:41,905   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-12-19T05:11:41,908   copying build/lib/pele_platform/Examples/water/input_induced.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-12-19T05:11:41,914   copying build/lib/pele_platform/Examples/water/input_bs.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-12-19T05:11:41,919   copying build/lib/pele_platform/Examples/water/input_bs_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-12-19T05:11:41,925   copying build/lib/pele_platform/Examples/water/complex_induced.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-12-19T05:11:41,944   copying build/lib/pele_platform/Examples/water/input_nwaters.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-12-19T05:11:41,949   copying build/lib/pele_platform/Examples/water/water_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-12-19T05:11:41,1000   copying build/lib/pele_platform/Examples/water/water2_pele.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-12-19T05:11:42,005   copying build/lib/pele_platform/Examples/water/complex_ref_LESSH2O.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-12-19T05:11:42,053   copying build/lib/pele_platform/Examples/water/input_lig_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-12-19T05:11:42,059   copying build/lib/pele_platform/Examples/water/input_previous_water.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-12-19T05:11:42,064   copying build/lib/pele_platform/Examples/water/input_all.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-12-19T05:11:42,070   copying build/lib/pele_platform/Examples/water/water_pele.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-12-19T05:11:42,077   copying build/lib/pele_platform/Examples/water/input_lig.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2021-12-19T05:11:42,084   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/flags
2021-12-19T05:11:42,086   copying build/lib/pele_platform/Examples/flags/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/flags
2021-12-19T05:11:42,094   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc
2021-12-19T05:11:42,098   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-12-19T05:11:42,100   copying build/lib/pele_platform/Examples/clustering_xtc/0/trajectory_3.xtc -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-12-19T05:11:42,108   copying build/lib/pele_platform/Examples/clustering_xtc/0/topology.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-12-19T05:11:42,145   copying build/lib/pele_platform/Examples/clustering_xtc/0/trajectory_1.xtc -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-12-19T05:11:42,154   copying build/lib/pele_platform/Examples/clustering_xtc/0/trajectory_4.xtc -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-12-19T05:11:42,163   copying build/lib/pele_platform/Examples/clustering_xtc/0/report_3 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-12-19T05:11:42,168   copying build/lib/pele_platform/Examples/clustering_xtc/0/report_4 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-12-19T05:11:42,174   copying build/lib/pele_platform/Examples/clustering_xtc/0/trajectory_2.xtc -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-12-19T05:11:42,181   copying build/lib/pele_platform/Examples/clustering_xtc/0/report_2 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-12-19T05:11:42,185   copying build/lib/pele_platform/Examples/clustering_xtc/0/report_1 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2021-12-19T05:11:42,189   copying build/lib/pele_platform/Examples/clustering_xtc/water_clustering.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc
2021-12-19T05:11:42,194   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2021-12-19T05:11:42,196   copying build/lib/pele_platform/Examples/PPI/1tnf_ligand.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2021-12-19T05:11:42,202   copying build/lib/pele_platform/Examples/PPI/1tnf_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2021-12-19T05:11:42,264   copying build/lib/pele_platform/Examples/PPI/input_skipref.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2021-12-19T05:11:42,269   copying build/lib/pele_platform/Examples/PPI/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2021-12-19T05:11:42,274   copying build/lib/pele_platform/Examples/PPI/1f47_ligand.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2021-12-19T05:11:42,281   copying build/lib/pele_platform/Examples/PPI/1f47_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2021-12-19T05:11:42,305   copying build/lib/pele_platform/Examples/PPI/input_folder.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2021-12-19T05:11:42,312   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/ligand_conformations
2021-12-19T05:11:42,314   copying build/lib/pele_platform/Examples/ligand_conformations/3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/ligand_conformations
2021-12-19T05:11:42,321   copying build/lib/pele_platform/Examples/ligand_conformations/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/ligand_conformations
2021-12-19T05:11:42,325   copying build/lib/pele_platform/Examples/ligand_conformations/2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/ligand_conformations
2021-12-19T05:11:42,329   copying build/lib/pele_platform/Examples/ligand_conformations/1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/ligand_conformations
2021-12-19T05:11:42,335   creating build/bdist.linux-armv7l/wheel/pele_platform/covalent_docking
2021-12-19T05:11:42,336   copying build/lib/pele_platform/covalent_docking/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/covalent_docking
2021-12-19T05:11:42,340   copying build/lib/pele_platform/covalent_docking/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/covalent_docking
2021-12-19T05:11:42,348   creating build/bdist.linux-armv7l/wheel/pele_platform/analysis
2021-12-19T05:11:42,351   copying build/lib/pele_platform/analysis/interactive_plot.py -> build/bdist.linux-armv7l/wheel/pele_platform/analysis
2021-12-19T05:11:42,359   copying build/lib/pele_platform/analysis/data.py -> build/bdist.linux-armv7l/wheel/pele_platform/analysis
2021-12-19T05:11:42,369   copying build/lib/pele_platform/analysis/clustering.py -> build/bdist.linux-armv7l/wheel/pele_platform/analysis
2021-12-19T05:11:42,377   copying build/lib/pele_platform/analysis/analysis.py -> build/bdist.linux-armv7l/wheel/pele_platform/analysis
2021-12-19T05:11:42,390   copying build/lib/pele_platform/analysis/pdf_report.py -> build/bdist.linux-armv7l/wheel/pele_platform/analysis
2021-12-19T05:11:42,396   copying build/lib/pele_platform/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/analysis
2021-12-19T05:11:42,401   copying build/lib/pele_platform/analysis/plot.py -> build/bdist.linux-armv7l/wheel/pele_platform/analysis
2021-12-19T05:11:42,409   copying build/lib/pele_platform/plotter.py -> build/bdist.linux-armv7l/wheel/pele_platform
2021-12-19T05:11:42,423   creating build/bdist.linux-armv7l/wheel/pele_platform/site_finder
2021-12-19T05:11:42,424   copying build/lib/pele_platform/site_finder/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/site_finder
2021-12-19T05:11:42,428   copying build/lib/pele_platform/site_finder/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/site_finder
2021-12-19T05:11:42,433   copying build/lib/pele_platform/_version.py -> build/bdist.linux-armv7l/wheel/pele_platform
2021-12-19T05:11:42,438   creating build/bdist.linux-armv7l/wheel/pele_platform/Templates
2021-12-19T05:11:42,440   copying build/lib/pele_platform/Templates/pele_template.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Templates
2021-12-19T05:11:42,445   copying build/lib/pele_platform/Templates/template_adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Templates
2021-12-19T05:11:42,451   copying build/lib/pele_platform/Templates/solventParamsHCTOBC.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Templates
2021-12-19T05:11:42,464   creating build/bdist.linux-armv7l/wheel/pele_platform/Checker
2021-12-19T05:11:42,467   copying build/lib/pele_platform/Checker/pdb_checker.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2021-12-19T05:11:42,474   copying build/lib/pele_platform/Checker/executable.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2021-12-19T05:11:42,479   copying build/lib/pele_platform/Checker/python_version.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2021-12-19T05:11:42,484   copying build/lib/pele_platform/Checker/valid_flags.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2021-12-19T05:11:42,491   copying build/lib/pele_platform/Checker/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2021-12-19T05:11:42,495   copying build/lib/pele_platform/Checker/environment_variables.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2021-12-19T05:11:42,501   copying build/lib/pele_platform/Checker/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2021-12-19T05:11:42,508   creating build/bdist.linux-armv7l/wheel/pele_platform/Errors
2021-12-19T05:11:42,510   copying build/lib/pele_platform/Errors/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Errors
2021-12-19T05:11:42,515   copying build/lib/pele_platform/Errors/custom_errors.py -> build/bdist.linux-armv7l/wheel/pele_platform/Errors
2021-12-19T05:11:42,522   creating build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-12-19T05:11:42,525   copying build/lib/pele_platform/Frag/libraries.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-12-19T05:11:42,530   copying build/lib/pele_platform/Frag/fragments.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-12-19T05:11:42,534   copying build/lib/pele_platform/Frag/checker.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-12-19T05:11:42,538   copying build/lib/pele_platform/Frag/simulation.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-12-19T05:11:42,545   creating build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2021-12-19T05:11:42,548   copying build/lib/pele_platform/Frag/parameters/files.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2021-12-19T05:11:42,554   copying build/lib/pele_platform/Frag/parameters/metrics.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2021-12-19T05:11:42,559   copying build/lib/pele_platform/Frag/parameters/simulation.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2021-12-19T05:11:42,564   copying build/lib/pele_platform/Frag/parameters/optional.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2021-12-19T05:11:42,570   copying build/lib/pele_platform/Frag/parameters/water.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2021-12-19T05:11:42,575   copying build/lib/pele_platform/Frag/parameters/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2021-12-19T05:11:42,581   copying build/lib/pele_platform/Frag/helpers.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-12-19T05:11:42,588   copying build/lib/pele_platform/Frag/atoms.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-12-19T05:11:42,593   copying build/lib/pele_platform/Frag/analysis.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-12-19T05:11:42,599   copying build/lib/pele_platform/Frag/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-12-19T05:11:42,604   copying build/lib/pele_platform/Frag/generative_model.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2021-12-19T05:11:42,611   creating build/bdist.linux-armv7l/wheel/pele_platform/features
2021-12-19T05:11:42,613   copying build/lib/pele_platform/features/adaptive.py -> build/bdist.linux-armv7l/wheel/pele_platform/features
2021-12-19T05:11:42,621   copying build/lib/pele_platform/features/frag.py -> build/bdist.linux-armv7l/wheel/pele_platform/features
2021-12-19T05:11:42,626   copying build/lib/pele_platform/features/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/features
2021-12-19T05:11:42,631   copying build/lib/pele_platform/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform
2021-12-19T05:11:42,637   creating build/bdist.linux-armv7l/wheel/pele_platform/RNA
2021-12-19T05:11:42,639   copying build/lib/pele_platform/RNA/prep.py -> build/bdist.linux-armv7l/wheel/pele_platform/RNA
2021-12-19T05:11:42,645   copying build/lib/pele_platform/RNA/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/RNA
2021-12-19T05:11:42,652   creating build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-12-19T05:11:42,654   copying build/lib/pele_platform/Adaptive/preequilibrator.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-12-19T05:11:42,661   copying build/lib/pele_platform/Adaptive/metrics.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-12-19T05:11:42,666   copying build/lib/pele_platform/Adaptive/simulation.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-12-19T05:11:42,674   copying build/lib/pele_platform/Adaptive/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-12-19T05:11:42,679   copying build/lib/pele_platform/Adaptive/box.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-12-19T05:11:42,684   copying build/lib/pele_platform/Adaptive/pca.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-12-19T05:11:42,690   copying build/lib/pele_platform/Adaptive/parametrizer.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-12-19T05:11:42,700   copying build/lib/pele_platform/Adaptive/plop_ligand_parametrization.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-12-19T05:11:42,705   copying build/lib/pele_platform/Adaptive/interaction_restrictions.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-12-19T05:11:42,712   copying build/lib/pele_platform/Adaptive/plop_solvent.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2021-12-19T05:11:42,718   creating build/bdist.linux-armv7l/wheel/pele_platform/constants
2021-12-19T05:11:42,721   copying build/lib/pele_platform/constants/pele_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/constants
2021-12-19T05:11:42,728   copying build/lib/pele_platform/constants/constants.py -> build/bdist.linux-armv7l/wheel/pele_platform/constants
2021-12-19T05:11:42,734   copying build/lib/pele_platform/constants/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/constants
2021-12-19T05:11:42,737   copying build/lib/pele_platform/converter.py -> build/bdist.linux-armv7l/wheel/pele_platform
2021-12-19T05:11:42,745   creating build/bdist.linux-armv7l/wheel/pele_platform/out_in
2021-12-19T05:11:42,747   copying build/lib/pele_platform/out_in/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/out_in
2021-12-19T05:11:42,751   copying build/lib/pele_platform/out_in/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/out_in
2021-12-19T05:11:42,758   creating build/bdist.linux-armv7l/wheel/pele_platform/enzyme_engineering
2021-12-19T05:11:42,761   copying build/lib/pele_platform/enzyme_engineering/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/enzyme_engineering
2021-12-19T05:11:42,766   copying build/lib/pele_platform/enzyme_engineering/saturated_mutagenesis.py -> build/bdist.linux-armv7l/wheel/pele_platform/enzyme_engineering
2021-12-19T05:11:42,772   creating build/bdist.linux-armv7l/wheel/pele_platform/gpcr
2021-12-19T05:11:42,774   copying build/lib/pele_platform/gpcr/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/gpcr
2021-12-19T05:11:42,778   copying build/lib/pele_platform/gpcr/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/gpcr
2021-12-19T05:11:42,783   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities
2021-12-19T05:11:42,785   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters
2021-12-19T05:11:42,788   copying build/lib/pele_platform/Utilities/Parameters/parameters.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters
2021-12-19T05:11:42,795   copying build/lib/pele_platform/Utilities/Parameters/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters
2021-12-19T05:11:42,802   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams
2021-12-19T05:11:42,806   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2021-12-19T05:11:42,809   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2021-12-19T05:11:42,813   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams/msm_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2021-12-19T05:11:42,818   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2021-12-19T05:11:42,819   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams/glide_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2021-12-19T05:11:42,824   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2021-12-19T05:11:42,828   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PCA
2021-12-19T05:11:42,830   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PCA
2021-12-19T05:11:42,836   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA/pca.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PCA
2021-12-19T05:11:42,844   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2021-12-19T05:11:42,846   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2021-12-19T05:11:42,851   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams/inout_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2021-12-19T05:11:42,859   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/site_finder
2021-12-19T05:11:42,861   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/site_finder/site_finder.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/site_finder
2021-12-19T05:11:42,868   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/site_finder/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/site_finder
2021-12-19T05:11:42,872   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/simulation_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams
2021-12-19T05:11:42,880   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2021-12-19T05:11:42,882   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams/bias_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2021-12-19T05:11:42,887   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2021-12-19T05:11:42,891   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams
2021-12-19T05:11:42,897   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PPI
2021-12-19T05:11:42,900   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PPI
2021-12-19T05:11:42,905   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI/ppi.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PPI
2021-12-19T05:11:42,912   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationFolders
2021-12-19T05:11:42,915   copying build/lib/pele_platform/Utilities/Parameters/SimulationFolders/simulation_folders.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationFolders
2021-12-19T05:11:42,921   copying build/lib/pele_platform/Utilities/Parameters/SimulationFolders/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationFolders
2021-12-19T05:11:42,928   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-12-19T05:11:42,931   copying build/lib/pele_platform/Utilities/Helpers/plop_launcher.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-12-19T05:11:42,936   copying build/lib/pele_platform/Utilities/Helpers/simulation.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-12-19T05:11:42,941   copying build/lib/pele_platform/Utilities/Helpers/helpers.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-12-19T05:11:42,948   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/constraints
2021-12-19T05:11:42,950   copying build/lib/pele_platform/Utilities/Helpers/constraints/smiles_constraints.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/constraints
2021-12-19T05:11:42,958   copying build/lib/pele_platform/Utilities/Helpers/constraints/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/constraints
2021-12-19T05:11:42,962   copying build/lib/pele_platform/Utilities/Helpers/constraints/alpha_constraints.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/constraints
2021-12-19T05:11:42,969   copying build/lib/pele_platform/Utilities/Helpers/map_atoms.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-12-19T05:11:42,975   copying build/lib/pele_platform/Utilities/Helpers/yaml_parser.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-12-19T05:11:42,981   copying build/lib/pele_platform/Utilities/Helpers/interaction_constraints.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-12-19T05:11:42,986   copying build/lib/pele_platform/Utilities/Helpers/missing_residues.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-12-19T05:11:42,990   copying build/lib/pele_platform/Utilities/Helpers/water.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-12-19T05:11:42,997   copying build/lib/pele_platform/Utilities/Helpers/launcher.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-12-19T05:11:43,003   copying build/lib/pele_platform/Utilities/Helpers/ligand_conformations.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-12-19T05:11:43,009   copying build/lib/pele_platform/Utilities/Helpers/calculatePCA4PELE.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-12-19T05:11:43,016   copying build/lib/pele_platform/Utilities/Helpers/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-12-19T05:11:43,019   copying build/lib/pele_platform/Utilities/Helpers/conda_deployment.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-12-19T05:11:43,023   copying build/lib/pele_platform/Utilities/Helpers/template_builder.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-12-19T05:11:43,027   copying build/lib/pele_platform/Utilities/Helpers/system_prep.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-12-19T05:11:43,034   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/Metals
2021-12-19T05:11:43,037   copying build/lib/pele_platform/Utilities/Helpers/Metals/metal_constraints.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/Metals
2021-12-19T05:11:43,044   copying build/lib/pele_platform/Utilities/Helpers/Metals/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/Metals
2021-12-19T05:11:43,048   copying build/lib/pele_platform/Utilities/Helpers/Metals/metal_polarisation.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/Metals
2021-12-19T05:11:43,054   copying build/lib/pele_platform/Utilities/Helpers/randomize.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-12-19T05:11:43,059   copying build/lib/pele_platform/Utilities/Helpers/center_of_mass.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-12-19T05:11:43,063   copying build/lib/pele_platform/Utilities/Helpers/solventOBCParamsGenerator.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-12-19T05:11:43,069   copying build/lib/pele_platform/Utilities/Helpers/bestStructs.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-12-19T05:11:43,074   copying build/lib/pele_platform/Utilities/Helpers/protein_wizard.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2021-12-19T05:11:43,080   copying build/lib/pele_platform/Utilities/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities
2021-12-19T05:11:43,085   copying build/lib/pele_platform/pathway_extractor.py -> build/bdist.linux-armv7l/wheel/pele_platform
2021-12-19T05:11:43,092   copying build/lib/pele_platform/main.py -> build/bdist.linux-armv7l/wheel/pele_platform
2021-12-19T05:11:43,097   creating build/bdist.linux-armv7l/wheel/pele_platform/PPI
2021-12-19T05:11:43,099   copying build/lib/pele_platform/PPI/simulation_launcher.py -> build/bdist.linux-armv7l/wheel/pele_platform/PPI
2021-12-19T05:11:43,103   copying build/lib/pele_platform/PPI/preparation.py -> build/bdist.linux-armv7l/wheel/pele_platform/PPI
2021-12-19T05:11:43,107   copying build/lib/pele_platform/PPI/cluster.py -> build/bdist.linux-armv7l/wheel/pele_platform/PPI
2021-12-19T05:11:43,111   copying build/lib/pele_platform/PPI/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/PPI
2021-12-19T05:11:43,115   copying build/lib/pele_platform/PPI/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/PPI
2021-12-19T05:11:43,121   running install_egg_info
2021-12-19T05:11:43,144   Copying pele_platform.egg-info to build/bdist.linux-armv7l/wheel/pele_platform-1.6.2-py3.5.egg-info
2021-12-19T05:11:43,171   running install_scripts
2021-12-19T05:11:43,427   creating build/bdist.linux-armv7l/wheel/pele_platform-1.6.2.dist-info/WHEEL
2021-12-19T05:12:01,644   Building wheel for pele-platform (setup.py): finished with status 'done'
2021-12-19T05:12:01,858   Created wheel for pele-platform: filename=pele_platform-1.6.2-py3-none-any.whl size=12616061 sha256=043772a66d914c07b681016d9eb21a66c3f2fa258b180cfca7448bf80837f378
2021-12-19T05:12:01,859   Stored in directory: /tmp/pip-ephem-wheel-cache-ge1jdgqy/wheels/32/f6/56/6080a759150cf1969f10a069721ee6bb39b43566165749db97
2021-12-19T05:12:01,928 Successfully built pele-platform
2021-12-19T05:12:04,120 Removed build tracker: '/tmp/pip-req-tracker-lqg501j_'