2021-12-19T06:35:22,280 Created temporary directory: /tmp/pip-ephem-wheel-cache-08rw6vtb
2021-12-19T06:35:22,287 Created temporary directory: /tmp/pip-req-tracker-v2df_wgr
2021-12-19T06:35:22,287 Initialized build tracking at /tmp/pip-req-tracker-v2df_wgr
2021-12-19T06:35:22,288 Created build tracker: /tmp/pip-req-tracker-v2df_wgr
2021-12-19T06:35:22,288 Entered build tracker: /tmp/pip-req-tracker-v2df_wgr
2021-12-19T06:35:22,290 Created temporary directory: /tmp/pip-wheel-1nfmv2hg
2021-12-19T06:35:22,351 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-12-19T06:35:22,354 2 location(s) to search for versions of apples:
2021-12-19T06:35:22,354 * https://pypi.org/simple/apples/
2021-12-19T06:35:22,354 * https://www.piwheels.org/simple/apples/
2021-12-19T06:35:22,355 Fetching project page and analyzing links: https://pypi.org/simple/apples/
2021-12-19T06:35:22,357 Getting page https://pypi.org/simple/apples/
2021-12-19T06:35:22,361 Found index url https://pypi.org/simple
2021-12-19T06:35:22,685   Found link https://files.pythonhosted.org/packages/a8/62/73af68231d768bcc781a2289e5c93b1b4060c1da888186a3cb4fc06f2b35/apples-1.2.1.tar.gz#sha256=7814a03ebcc2bd1afe51c7b90d43e068c84a6385b87462e62992ca8294ee9593 (from https://pypi.org/simple/apples/), version: 1.2.1
2021-12-19T06:35:22,686   Found link https://files.pythonhosted.org/packages/08/e6/24efd5e5fb01a411a389c5c870310ee0e751e19b1f753228ec40eeeb84e3/apples-1.2.3.tar.gz#sha256=22459c89f177f4ae49803d5d87ae219de503c3c7f9054b36027ddc0ae57243a8 (from https://pypi.org/simple/apples/), version: 1.2.3
2021-12-19T06:35:22,687   Found link https://files.pythonhosted.org/packages/8b/20/94d3ca2ae0368df0d1d0c864d1cf51250a7ddf7c1808c91dbfb87f677ba6/apples-1.2.4.tar.gz#sha256=4c199a183cb001a678a74312b2c4c193c42ec773c29cba2200e17c3ad97fe943 (from https://pypi.org/simple/apples/), version: 1.2.4
2021-12-19T06:35:22,688   Found link https://files.pythonhosted.org/packages/a9/fd/681f0174edefb362000f60988e31292ec502f73e3cb25c322d1c6d2fb9fc/apples-1.3.0.tar.gz#sha256=50909b4ddca5c9ee3e0c8b623bdbfa5a00f05969f5bcf65904cefb861fcb510d (from https://pypi.org/simple/apples/), version: 1.3.0
2021-12-19T06:35:22,689   Found link https://files.pythonhosted.org/packages/ca/06/8fb609001720a6af6f1467bfe9b93e422fd49c174aedf947f15fd8ed10bc/apples-2.0.0.tar.gz#sha256=87de7488aaf7705b599dbefb1712a26efc2a48616bf97fcadcf383065a722c2b (from https://pypi.org/simple/apples/), version: 2.0.0
2021-12-19T06:35:22,690   Found link https://files.pythonhosted.org/packages/32/65/fae772f0a15813698c50cee20bfadebda401aa05f8ab17150d4b89537efb/apples-2.0.1.tar.gz#sha256=e4e30ff684f47c5dc50ae5ee69ef8bb1a8bcf93643f719dbd198c7ddbea9d8df (from https://pypi.org/simple/apples/), version: 2.0.1
2021-12-19T06:35:22,691   Found link https://files.pythonhosted.org/packages/f1/be/71602abfbba6cd73baf152b703bbe8085b41291dcf4b8b5ac386cc51fafc/apples-2.0.2.tar.gz#sha256=68a54265cd5069f2940a736810b179a911c81bfcc1b844283de639a0e8f1d9f2 (from https://pypi.org/simple/apples/), version: 2.0.2
2021-12-19T06:35:22,692   Found link https://files.pythonhosted.org/packages/e8/30/1f880163b12a0887ea3a641e662b830c6889da60fafca54e7c0d8f3dbc41/apples-2.0.3.tar.gz#sha256=6ea8e1becdf55ec1c8a6f5655b1c32973d9c8759e1eaaff12a16c3eca1c3edbd (from https://pypi.org/simple/apples/), version: 2.0.3
2021-12-19T06:35:22,692   Found link https://files.pythonhosted.org/packages/11/aa/9a114032ccd2457d1031111160855525fe884d6c00a9126ee3c8bcff29dc/apples-2.0.4.tar.gz#sha256=dcca3f231d41f8892eab7db7064f9239e55190905412c2bf1877e9d5ae94b854 (from https://pypi.org/simple/apples/), version: 2.0.4
2021-12-19T06:35:22,693   Found link https://files.pythonhosted.org/packages/9b/34/8c91e8ab63b3a3a38fbdb91fcadcc1512bd74ad4b74782ceeba9e04043db/apples-2.0.5.tar.gz#sha256=6dc147168b6cec4d54798578fd5623a11a0544f785322526bfaa99db6b7b5fd2 (from https://pypi.org/simple/apples/), version: 2.0.5
2021-12-19T06:35:22,694   Found link https://files.pythonhosted.org/packages/3d/8f/20490ae36b289b403e65a2a09a5120fec47ad16ca46e24bbba40d4bfd51e/apples-2.0.6.tar.gz#sha256=9d16c4ad4e79eaf5637c09f2469ac17257c99936026257d5b055a731b4de99f1 (from https://pypi.org/simple/apples/), version: 2.0.6
2021-12-19T06:35:22,695 Fetching project page and analyzing links: https://www.piwheels.org/simple/apples/
2021-12-19T06:35:22,695 Getting page https://www.piwheels.org/simple/apples/
2021-12-19T06:35:22,698 Found index url https://www.piwheels.org/simple
2021-12-19T06:35:23,001   Skipping link: No binaries permitted for apples: https://www.piwheels.org/simple/apples/apples-1.2.1-py3-none-any.whl#sha256=3ec173a65f1e154ae81ff51306b5d21db0c13f3425912a6113194da42594ca89 (from https://www.piwheels.org/simple/apples/)
2021-12-19T06:35:23,002   Skipping link: No binaries permitted for apples: https://www.piwheels.org/simple/apples/apples-1.2.3-py3-none-any.whl#sha256=a9406e2787166fec2af2169b9c27696ee541c18c3af3f8d78c14d2364aef868f (from https://www.piwheels.org/simple/apples/)
2021-12-19T06:35:23,003   Skipping link: No binaries permitted for apples: https://www.piwheels.org/simple/apples/apples-1.2.4-py3-none-any.whl#sha256=6d0558f368fbff39d49738c7cfa8377a03f678d7509d40ddf974c756ad578095 (from https://www.piwheels.org/simple/apples/)
2021-12-19T06:35:23,004   Skipping link: No binaries permitted for apples: https://www.piwheels.org/simple/apples/apples-1.3.0-py3-none-any.whl#sha256=e0245b39d476fbab49f7f9c24e6253b810cef706cb46571de113d1b52579ae46 (from https://www.piwheels.org/simple/apples/)
2021-12-19T06:35:23,004   Skipping link: No binaries permitted for apples: https://www.piwheels.org/simple/apples/apples-2.0.0-py3-none-any.whl#sha256=36ed7d6802e7c3b46a33b3e4c54324ffcb8e8d659556dcf6261ecd0208f4f2f5 (from https://www.piwheels.org/simple/apples/)
2021-12-19T06:35:23,005   Skipping link: No binaries permitted for apples: https://www.piwheels.org/simple/apples/apples-2.0.1-py3-none-any.whl#sha256=fee4f72b4099ede7c621605a227fae27775f03d2a9654b17e6e6cb5bc971069e (from https://www.piwheels.org/simple/apples/)
2021-12-19T06:35:23,005   Skipping link: No binaries permitted for apples: https://www.piwheels.org/simple/apples/apples-2.0.2-py3-none-any.whl#sha256=7b2a3b37bf6ba42ec3506ba65bbbf1961ea2a2540100d9bfed4f901a6edd1cf7 (from https://www.piwheels.org/simple/apples/)
2021-12-19T06:35:23,006   Skipping link: No binaries permitted for apples: https://www.piwheels.org/simple/apples/apples-2.0.3-py3-none-any.whl#sha256=2aeff899d560c7f18a24ace0d942ec9c60903a681a67aed3f5e775d47d929e7a (from https://www.piwheels.org/simple/apples/)
2021-12-19T06:35:23,007   Skipping link: No binaries permitted for apples: https://www.piwheels.org/simple/apples/apples-2.0.4-py3-none-any.whl#sha256=cb14fc20a431720fbec493e2bd452ec93e0bde1d91d57d6381e0d3d76a01158b (from https://www.piwheels.org/simple/apples/)
2021-12-19T06:35:23,007   Skipping link: No binaries permitted for apples: https://www.piwheels.org/simple/apples/apples-2.0.5-py3-none-any.whl#sha256=fccf11e1d16b02860894ff2cffa4f4676554902fdc6851ee2f224bf9724c4fcf (from https://www.piwheels.org/simple/apples/)
2021-12-19T06:35:23,041 Given no hashes to check 1 links for project 'apples': discarding no candidates
2021-12-19T06:35:23,072 Collecting apples==2.0.6
2021-12-19T06:35:23,076   Created temporary directory: /tmp/pip-unpack-j_g_tbjd
2021-12-19T06:35:23,374   Downloading apples-2.0.6.tar.gz (758 kB)
2021-12-19T06:35:23,999   Added apples==2.0.6 from https://files.pythonhosted.org/packages/3d/8f/20490ae36b289b403e65a2a09a5120fec47ad16ca46e24bbba40d4bfd51e/apples-2.0.6.tar.gz#sha256=9d16c4ad4e79eaf5637c09f2469ac17257c99936026257d5b055a731b4de99f1 to build tracker '/tmp/pip-req-tracker-v2df_wgr'
2021-12-19T06:35:24,003     Running setup.py (path:/tmp/pip-wheel-1nfmv2hg/apples_a0f608fc660b4989a910556740ca083c/setup.py) egg_info for package apples
2021-12-19T06:35:24,005     Created temporary directory: /tmp/pip-pip-egg-info-7aqg90tu
2021-12-19T06:35:24,006     Running command python setup.py egg_info
2021-12-19T06:35:26,132     running egg_info
2021-12-19T06:35:26,137     creating /tmp/pip-pip-egg-info-7aqg90tu/apples.egg-info
2021-12-19T06:35:26,140     writing /tmp/pip-pip-egg-info-7aqg90tu/apples.egg-info/PKG-INFO
2021-12-19T06:35:26,146     writing top-level names to /tmp/pip-pip-egg-info-7aqg90tu/apples.egg-info/top_level.txt
2021-12-19T06:35:26,148     writing requirements to /tmp/pip-pip-egg-info-7aqg90tu/apples.egg-info/requires.txt
2021-12-19T06:35:26,150     writing dependency_links to /tmp/pip-pip-egg-info-7aqg90tu/apples.egg-info/dependency_links.txt
2021-12-19T06:35:26,155     writing manifest file '/tmp/pip-pip-egg-info-7aqg90tu/apples.egg-info/SOURCES.txt'
2021-12-19T06:35:26,517     reading manifest file '/tmp/pip-pip-egg-info-7aqg90tu/apples.egg-info/SOURCES.txt'
2021-12-19T06:35:26,520     reading manifest template 'MANIFEST.in'
2021-12-19T06:35:26,532     writing manifest file '/tmp/pip-pip-egg-info-7aqg90tu/apples.egg-info/SOURCES.txt'
2021-12-19T06:35:26,666   Source in /tmp/pip-wheel-1nfmv2hg/apples_a0f608fc660b4989a910556740ca083c has version 2.0.6, which satisfies requirement apples==2.0.6 from https://files.pythonhosted.org/packages/3d/8f/20490ae36b289b403e65a2a09a5120fec47ad16ca46e24bbba40d4bfd51e/apples-2.0.6.tar.gz#sha256=9d16c4ad4e79eaf5637c09f2469ac17257c99936026257d5b055a731b4de99f1
2021-12-19T06:35:26,668   Removed apples==2.0.6 from https://files.pythonhosted.org/packages/3d/8f/20490ae36b289b403e65a2a09a5120fec47ad16ca46e24bbba40d4bfd51e/apples-2.0.6.tar.gz#sha256=9d16c4ad4e79eaf5637c09f2469ac17257c99936026257d5b055a731b4de99f1 from build tracker '/tmp/pip-req-tracker-v2df_wgr'
2021-12-19T06:35:26,676 Created temporary directory: /tmp/pip-unpack-f6b2gjk_
2021-12-19T06:35:26,677 Building wheels for collected packages: apples
2021-12-19T06:35:26,686   Created temporary directory: /tmp/pip-wheel-d043hiuc
2021-12-19T06:35:26,687   Building wheel for apples (setup.py): started
2021-12-19T06:35:26,688   Destination directory: /tmp/pip-wheel-d043hiuc
2021-12-19T06:35:26,688   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-1nfmv2hg/apples_a0f608fc660b4989a910556740ca083c/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-1nfmv2hg/apples_a0f608fc660b4989a910556740ca083c/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-d043hiuc
2021-12-19T06:35:28,862   running bdist_wheel
2021-12-19T06:35:28,878   running build
2021-12-19T06:35:28,878   running build_py
2021-12-19T06:35:29,224   creating build
2021-12-19T06:35:29,225   creating build/lib
2021-12-19T06:35:29,226   creating build/lib/apples
2021-12-19T06:35:29,229   copying apples/version.py -> build/lib/apples
2021-12-19T06:35:29,233   copying apples/reestimateBackbone.py -> build/lib/apples
2021-12-19T06:35:29,238   copying apples/FM.py -> build/lib/apples
2021-12-19T06:35:29,243   copying apples/OLS.py -> build/lib/apples
2021-12-19T06:35:29,248   copying apples/distance.py -> build/lib/apples
2021-12-19T06:35:29,253   copying apples/OptionsBasic.py -> build/lib/apples
2021-12-19T06:35:29,259   copying apples/PoolRepresentativeWorker.py -> build/lib/apples
2021-12-19T06:35:29,265   copying apples/util.py -> build/lib/apples
2021-12-19T06:35:29,271   copying apples/OptionsBuild.py -> build/lib/apples
2021-12-19T06:35:29,275   copying apples/Algorithm.py -> build/lib/apples
2021-12-19T06:35:29,279   copying apples/__init__.py -> build/lib/apples
2021-12-19T06:35:29,283   copying apples/jutil.py -> build/lib/apples
2021-12-19T06:35:29,287   copying apples/Reference.py -> build/lib/apples
2021-12-19T06:35:29,292   copying apples/BME.py -> build/lib/apples
2021-12-19T06:35:29,298   copying apples/prepareTree.py -> build/lib/apples
2021-12-19T06:35:29,303   copying apples/fasta2dic.py -> build/lib/apples
2021-12-19T06:35:29,310   copying apples/Subtree.py -> build/lib/apples
2021-12-19T06:35:29,316   copying apples/BE.py -> build/lib/apples
2021-12-19T06:35:29,320   copying apples/PoolQueryWorker.py -> build/lib/apples
2021-12-19T06:35:29,325   copying apples/PrioritySet.py -> build/lib/apples
2021-12-19T06:35:29,329   copying apples/OptionsRun.py -> build/lib/apples
2021-12-19T06:35:29,334   creating build/lib/apples/tools
2021-12-19T06:35:29,336   copying apples/tools/__init__.py -> build/lib/apples/tools
2021-12-19T06:35:29,340   running egg_info
2021-12-19T06:35:29,377   writing apples.egg-info/PKG-INFO
2021-12-19T06:35:29,382   writing top-level names to apples.egg-info/top_level.txt
2021-12-19T06:35:29,384   writing dependency_links to apples.egg-info/dependency_links.txt
2021-12-19T06:35:29,386   writing requirements to apples.egg-info/requires.txt
2021-12-19T06:35:29,400   reading manifest file 'apples.egg-info/SOURCES.txt'
2021-12-19T06:35:29,405   reading manifest template 'MANIFEST.in'
2021-12-19T06:35:29,419   writing manifest file 'apples.egg-info/SOURCES.txt'
2021-12-19T06:35:29,424   copying apples/tools/FastTree-darwin -> build/lib/apples/tools
2021-12-19T06:35:29,514   copying apples/tools/FastTree-linux -> build/lib/apples/tools
2021-12-19T06:35:29,557   copying apples/tools/FastTree.exe -> build/lib/apples/tools
2021-12-19T06:35:29,601   running build_scripts
2021-12-19T06:35:29,602   creating build/scripts-3.5
2021-12-19T06:35:29,605   copying and adjusting run_apples.py -> build/scripts-3.5
2021-12-19T06:35:29,610   copying and adjusting build_applesdtb.py -> build/scripts-3.5
2021-12-19T06:35:29,612   changing mode of build/scripts-3.5/run_apples.py from 644 to 755
2021-12-19T06:35:29,613   changing mode of build/scripts-3.5/build_applesdtb.py from 644 to 755
2021-12-19T06:35:29,622   installing to build/bdist.linux-armv7l/wheel
2021-12-19T06:35:29,622   running install
2021-12-19T06:35:29,624   running install_lib
2021-12-19T06:35:29,632   creating build/bdist.linux-armv7l
2021-12-19T06:35:29,633   creating build/bdist.linux-armv7l/wheel
2021-12-19T06:35:29,637   creating build/bdist.linux-armv7l/wheel/apples
2021-12-19T06:35:29,639   copying build/lib/apples/version.py -> build/bdist.linux-armv7l/wheel/apples
2021-12-19T06:35:29,643   copying build/lib/apples/reestimateBackbone.py -> build/bdist.linux-armv7l/wheel/apples
2021-12-19T06:35:29,648   copying build/lib/apples/FM.py -> build/bdist.linux-armv7l/wheel/apples
2021-12-19T06:35:29,652   copying build/lib/apples/OLS.py -> build/bdist.linux-armv7l/wheel/apples
2021-12-19T06:35:29,656   copying build/lib/apples/distance.py -> build/bdist.linux-armv7l/wheel/apples
2021-12-19T06:35:29,661   copying build/lib/apples/OptionsBasic.py -> build/bdist.linux-armv7l/wheel/apples
2021-12-19T06:35:29,666   copying build/lib/apples/PoolRepresentativeWorker.py -> build/bdist.linux-armv7l/wheel/apples
2021-12-19T06:35:29,671   copying build/lib/apples/util.py -> build/bdist.linux-armv7l/wheel/apples
2021-12-19T06:35:29,677   copying build/lib/apples/OptionsBuild.py -> build/bdist.linux-armv7l/wheel/apples
2021-12-19T06:35:29,682   copying build/lib/apples/Algorithm.py -> build/bdist.linux-armv7l/wheel/apples
2021-12-19T06:35:29,687   copying build/lib/apples/__init__.py -> build/bdist.linux-armv7l/wheel/apples
2021-12-19T06:35:29,691   creating build/bdist.linux-armv7l/wheel/apples/tools
2021-12-19T06:35:29,693   copying build/lib/apples/tools/FastTree-darwin -> build/bdist.linux-armv7l/wheel/apples/tools
2021-12-19T06:35:29,782   copying build/lib/apples/tools/__init__.py -> build/bdist.linux-armv7l/wheel/apples/tools
2021-12-19T06:35:29,786   copying build/lib/apples/tools/FastTree.exe -> build/bdist.linux-armv7l/wheel/apples/tools
2021-12-19T06:35:29,818   copying build/lib/apples/tools/FastTree-linux -> build/bdist.linux-armv7l/wheel/apples/tools
2021-12-19T06:35:29,859   copying build/lib/apples/jutil.py -> build/bdist.linux-armv7l/wheel/apples
2021-12-19T06:35:29,864   copying build/lib/apples/Reference.py -> build/bdist.linux-armv7l/wheel/apples
2021-12-19T06:35:29,869   copying build/lib/apples/BME.py -> build/bdist.linux-armv7l/wheel/apples
2021-12-19T06:35:29,874   copying build/lib/apples/prepareTree.py -> build/bdist.linux-armv7l/wheel/apples
2021-12-19T06:35:29,880   copying build/lib/apples/fasta2dic.py -> build/bdist.linux-armv7l/wheel/apples
2021-12-19T06:35:29,884   copying build/lib/apples/Subtree.py -> build/bdist.linux-armv7l/wheel/apples
2021-12-19T06:35:29,889   copying build/lib/apples/BE.py -> build/bdist.linux-armv7l/wheel/apples
2021-12-19T06:35:29,895   copying build/lib/apples/PoolQueryWorker.py -> build/bdist.linux-armv7l/wheel/apples
2021-12-19T06:35:29,901   copying build/lib/apples/PrioritySet.py -> build/bdist.linux-armv7l/wheel/apples
2021-12-19T06:35:29,906   copying build/lib/apples/OptionsRun.py -> build/bdist.linux-armv7l/wheel/apples
2021-12-19T06:35:29,910   running install_egg_info
2021-12-19T06:35:29,928   Copying apples.egg-info to build/bdist.linux-armv7l/wheel/apples-2.0.6-py3.5.egg-info
2021-12-19T06:35:29,961   running install_scripts
2021-12-19T06:35:30,102   creating build/bdist.linux-armv7l/wheel/apples-2.0.6.data
2021-12-19T06:35:30,104   creating build/bdist.linux-armv7l/wheel/apples-2.0.6.data/scripts
2021-12-19T06:35:30,107   copying build/scripts-3.5/run_apples.py -> build/bdist.linux-armv7l/wheel/apples-2.0.6.data/scripts
2021-12-19T06:35:30,114   copying build/scripts-3.5/build_applesdtb.py -> build/bdist.linux-armv7l/wheel/apples-2.0.6.data/scripts
2021-12-19T06:35:30,118   changing mode of build/bdist.linux-armv7l/wheel/apples-2.0.6.data/scripts/run_apples.py to 755
2021-12-19T06:35:30,119   changing mode of build/bdist.linux-armv7l/wheel/apples-2.0.6.data/scripts/build_applesdtb.py to 755
2021-12-19T06:35:30,166   creating build/bdist.linux-armv7l/wheel/apples-2.0.6.dist-info/WHEEL
2021-12-19T06:35:31,019   Building wheel for apples (setup.py): finished with status 'done'
2021-12-19T06:35:31,036   Created wheel for apples: filename=apples-2.0.6-py3-none-any.whl size=765846 sha256=9b0ff2720a08ba2a2a479e89a91aa52540d4f913d75d12e12c3772aaca54c8df
2021-12-19T06:35:31,036   Stored in directory: /tmp/pip-ephem-wheel-cache-08rw6vtb/wheels/3a/5c/62/dc3d4836dbd6242836bb9aad2bea5bb161de0d81a2729b2aab
2021-12-19T06:35:31,056 Successfully built apples
2021-12-19T06:35:31,193 Removed build tracker: '/tmp/pip-req-tracker-v2df_wgr'