2021-12-21T12:13:03,376 Created temporary directory: /tmp/pip-ephem-wheel-cache-3wks7doy
2021-12-21T12:13:03,382 Created temporary directory: /tmp/pip-req-tracker-k3o0y9n3
2021-12-21T12:13:03,382 Initialized build tracking at /tmp/pip-req-tracker-k3o0y9n3
2021-12-21T12:13:03,383 Created build tracker: /tmp/pip-req-tracker-k3o0y9n3
2021-12-21T12:13:03,383 Entered build tracker: /tmp/pip-req-tracker-k3o0y9n3
2021-12-21T12:13:03,384 Created temporary directory: /tmp/pip-wheel-s8httev3
2021-12-21T12:13:03,453 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-12-21T12:13:03,458 2 location(s) to search for versions of phasefilter:
2021-12-21T12:13:03,458 * https://pypi.org/simple/phasefilter/
2021-12-21T12:13:03,458 * https://www.piwheels.org/simple/phasefilter/
2021-12-21T12:13:03,459 Fetching project page and analyzing links: https://pypi.org/simple/phasefilter/
2021-12-21T12:13:03,461 Getting page https://pypi.org/simple/phasefilter/
2021-12-21T12:13:03,464 Found index url https://pypi.org/simple
2021-12-21T12:13:03,674   Skipping link: No binaries permitted for phasefilter: https://files.pythonhosted.org/packages/70/5b/a12acb782bfb5510c9281ffac13440c2089c4de283d92773f87408ebe857/PHASEfilter-0.0.1a1-py3-none-any.whl#sha256=f5d05fcef0bebaebddc8b37dd6c1a85ce75fac6cee2a44c1cff7c46aca20d121 (from https://pypi.org/simple/phasefilter/) (requires-python:>=3.5)
2021-12-21T12:13:03,675   Found link https://files.pythonhosted.org/packages/59/cb/fd5b96878a1f815759667d3556a4c72151d4f2bed79879dd817a0602c62f/PHASEfilter-0.0.1a1.tar.gz#sha256=ef3277b4002541318cf08e41a549bb5dd56a69418953dcb6f3f2276b14156735 (from https://pypi.org/simple/phasefilter/) (requires-python:>=3.5), version: 0.0.1a1
2021-12-21T12:13:03,676   Skipping link: No binaries permitted for phasefilter: https://files.pythonhosted.org/packages/50/c6/3d3933d1c8f89a5ee4ec5e9a954a42ddd2f616015b4e9de18132bccfc321/PHASEfilter-0.3.2-py3-none-any.whl#sha256=9d5cc14813af003c8660f3cb5874b081b94bdbbf09d1464c5dd12b6c9526d3c6 (from https://pypi.org/simple/phasefilter/) (requires-python:>=3.5)
2021-12-21T12:13:03,677   Found link https://files.pythonhosted.org/packages/41/62/26390ce2c8f9d3fe2739a79da1f0705fd646df1b32200df2697bba0852f2/PHASEfilter-0.3.2.tar.gz#sha256=95374b7d27212f89165da946b659325b446db282fe1e4244915394a9f676f2d6 (from https://pypi.org/simple/phasefilter/) (requires-python:>=3.5), version: 0.3.2
2021-12-21T12:13:03,678   Skipping link: No binaries permitted for phasefilter: https://files.pythonhosted.org/packages/4b/df/18736673d0a18ec858646025792d9808b1a6fedde5cbdf9609187e4f7d6f/PHASEfilter-0.3.3-py3-none-any.whl#sha256=f5b3cf53debb91e2600106a4b3a64e6dc242ef94d10d40db417e90a7a16d75d0 (from https://pypi.org/simple/phasefilter/) (requires-python:>=3.5)
2021-12-21T12:13:03,679   Found link https://files.pythonhosted.org/packages/06/1b/6b3db72941b86ea609af642664e09e6fb15afbaa742c367815e5b30e9f43/PHASEfilter-0.3.3.tar.gz#sha256=0e075565814be73bd03e6b799fba3352d21b62b358c2eb3f9a1c6e694782aa5f (from https://pypi.org/simple/phasefilter/) (requires-python:>=3.5), version: 0.3.3
2021-12-21T12:13:03,680   Skipping link: No binaries permitted for phasefilter: https://files.pythonhosted.org/packages/2f/ec/44fde574b28162fe0a07742b785fe0a1bb8218719858f62e0117ee7f6e78/PHASEfilter-0.3.4-py3-none-any.whl#sha256=298e024c74e35d6226e256a1249aa243c74291d38a08087e63342059d058c768 (from https://pypi.org/simple/phasefilter/) (requires-python:>=3.5)
2021-12-21T12:13:03,681   Found link https://files.pythonhosted.org/packages/d5/4b/6b7afc0d15ec9e7763d7cb1c1d1969f717c7a181d6db6e6fa4e3c16786bf/PHASEfilter-0.3.4.tar.gz#sha256=d4801e6c7671b772453d0f3c2593140b86c610643f759a6f3449e4b933103961 (from https://pypi.org/simple/phasefilter/) (requires-python:>=3.5), version: 0.3.4
2021-12-21T12:13:03,682   Skipping link: No binaries permitted for phasefilter: https://files.pythonhosted.org/packages/7c/69/702e45c82eb74d8b26493ad9f88fd152c36aab9580f88da7006a6024bd18/PHASEfilter-0.3.5-py3-none-any.whl#sha256=bfbd69f07cc71d24533d499ac617424e1ae06c047550793e20ec5e84cf5825e8 (from https://pypi.org/simple/phasefilter/) (requires-python:>=3.5)
2021-12-21T12:13:03,683   Found link https://files.pythonhosted.org/packages/80/3e/40e84d7d008a4866be91ad4e64b7c659ce0bfc80fec720119a0f380d55a5/PHASEfilter-0.3.5.tar.gz#sha256=0476ef19e9e932b0741d97560245b02e591eb9fb59ebccdcc02e9847535d98de (from https://pypi.org/simple/phasefilter/) (requires-python:>=3.5), version: 0.3.5
2021-12-21T12:13:03,684 Fetching project page and analyzing links: https://www.piwheels.org/simple/phasefilter/
2021-12-21T12:13:03,684 Getting page https://www.piwheels.org/simple/phasefilter/
2021-12-21T12:13:03,686 Found index url https://www.piwheels.org/simple
2021-12-21T12:13:03,938   Skipping link: No binaries permitted for phasefilter: https://www.piwheels.org/simple/phasefilter/PHASEfilter-0.0.1a1-py3-none-any.whl#sha256=f5d05fcef0bebaebddc8b37dd6c1a85ce75fac6cee2a44c1cff7c46aca20d121 (from https://www.piwheels.org/simple/phasefilter/) (requires-python:>=3.5)
2021-12-21T12:13:03,938   Skipping link: No binaries permitted for phasefilter: https://www.piwheels.org/simple/phasefilter/PHASEfilter-0.3.2-py3-none-any.whl#sha256=faf7a59bd43b3d436e6eeb9d9e1205e95908bb5ca75eac67452cddcc557915b4 (from https://www.piwheels.org/simple/phasefilter/) (requires-python:>=3.5)
2021-12-21T12:13:03,939   Skipping link: No binaries permitted for phasefilter: https://www.piwheels.org/simple/phasefilter/PHASEfilter-0.3.3-py3-none-any.whl#sha256=f201c1bb78408dc19e9a8864e46fcf91bf051ecacc8672f1878dab375ca1b676 (from https://www.piwheels.org/simple/phasefilter/) (requires-python:>=3.5)
2021-12-21T12:13:03,939   Skipping link: No binaries permitted for phasefilter: https://www.piwheels.org/simple/phasefilter/PHASEfilter-0.3.4-py3-none-any.whl#sha256=56a9dea2ecab01677b300d8e01d3f79c867521c0cf4e0d11bb3571ebd49ca11c (from https://www.piwheels.org/simple/phasefilter/) (requires-python:>=3.5)
2021-12-21T12:13:03,940 Skipping link: not a file: https://www.piwheels.org/simple/phasefilter/
2021-12-21T12:13:03,940 Skipping link: not a file: https://pypi.org/simple/phasefilter/
2021-12-21T12:13:03,973 Given no hashes to check 1 links for project 'phasefilter': discarding no candidates
2021-12-21T12:13:04,003 Collecting phasefilter==0.3.5
2021-12-21T12:13:04,005   Created temporary directory: /tmp/pip-unpack-dv4bb6d0
2021-12-21T12:13:04,092   Downloading PHASEfilter-0.3.5.tar.gz (52 kB)
2021-12-21T12:13:04,298   Added phasefilter==0.3.5 from https://files.pythonhosted.org/packages/80/3e/40e84d7d008a4866be91ad4e64b7c659ce0bfc80fec720119a0f380d55a5/PHASEfilter-0.3.5.tar.gz#sha256=0476ef19e9e932b0741d97560245b02e591eb9fb59ebccdcc02e9847535d98de to build tracker '/tmp/pip-req-tracker-k3o0y9n3'
2021-12-21T12:13:04,299   Running setup.py (path:/tmp/pip-wheel-s8httev3/phasefilter_497ae7ee1b464000a725313d59c61b54/setup.py) egg_info for package phasefilter
2021-12-21T12:13:04,300   Created temporary directory: /tmp/pip-pip-egg-info-e4sg_a2o
2021-12-21T12:13:04,301   Preparing metadata (setup.py): started
2021-12-21T12:13:04,302   Running command python setup.py egg_info
2021-12-21T12:13:06,162   running egg_info
2021-12-21T12:13:06,166   creating /tmp/pip-pip-egg-info-e4sg_a2o/PHASEfilter.egg-info
2021-12-21T12:13:06,167   writing /tmp/pip-pip-egg-info-e4sg_a2o/PHASEfilter.egg-info/PKG-INFO
2021-12-21T12:13:06,171   writing dependency_links to /tmp/pip-pip-egg-info-e4sg_a2o/PHASEfilter.egg-info/dependency_links.txt
2021-12-21T12:13:06,175   writing entry points to /tmp/pip-pip-egg-info-e4sg_a2o/PHASEfilter.egg-info/entry_points.txt
2021-12-21T12:13:06,177   writing requirements to /tmp/pip-pip-egg-info-e4sg_a2o/PHASEfilter.egg-info/requires.txt
2021-12-21T12:13:06,179   writing top-level names to /tmp/pip-pip-egg-info-e4sg_a2o/PHASEfilter.egg-info/top_level.txt
2021-12-21T12:13:06,182   writing manifest file '/tmp/pip-pip-egg-info-e4sg_a2o/PHASEfilter.egg-info/SOURCES.txt'
2021-12-21T12:13:06,218   reading manifest file '/tmp/pip-pip-egg-info-e4sg_a2o/PHASEfilter.egg-info/SOURCES.txt'
2021-12-21T12:13:06,228   writing manifest file '/tmp/pip-pip-egg-info-e4sg_a2o/PHASEfilter.egg-info/SOURCES.txt'
2021-12-21T12:13:06,230   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:726: UserWarning: Usage of dash-separated 'dist-dir' will not be supported in future versions. Please use the underscore name 'dist_dir' instead
2021-12-21T12:13:06,230     % (opt, underscore_opt)
2021-12-21T12:13:06,334   Preparing metadata (setup.py): finished with status 'done'
2021-12-21T12:13:06,342   Source in /tmp/pip-wheel-s8httev3/phasefilter_497ae7ee1b464000a725313d59c61b54 has version 0.3.5, which satisfies requirement phasefilter==0.3.5 from https://files.pythonhosted.org/packages/80/3e/40e84d7d008a4866be91ad4e64b7c659ce0bfc80fec720119a0f380d55a5/PHASEfilter-0.3.5.tar.gz#sha256=0476ef19e9e932b0741d97560245b02e591eb9fb59ebccdcc02e9847535d98de
2021-12-21T12:13:06,344   Removed phasefilter==0.3.5 from https://files.pythonhosted.org/packages/80/3e/40e84d7d008a4866be91ad4e64b7c659ce0bfc80fec720119a0f380d55a5/PHASEfilter-0.3.5.tar.gz#sha256=0476ef19e9e932b0741d97560245b02e591eb9fb59ebccdcc02e9847535d98de from build tracker '/tmp/pip-req-tracker-k3o0y9n3'
2021-12-21T12:13:06,356 Created temporary directory: /tmp/pip-unpack-ld_k990n
2021-12-21T12:13:06,357 Building wheels for collected packages: phasefilter
2021-12-21T12:13:06,366   Created temporary directory: /tmp/pip-wheel-yhr2qg8i
2021-12-21T12:13:06,366   Building wheel for phasefilter (setup.py): started
2021-12-21T12:13:06,367   Destination directory: /tmp/pip-wheel-yhr2qg8i
2021-12-21T12:13:06,367   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-s8httev3/phasefilter_497ae7ee1b464000a725313d59c61b54/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-s8httev3/phasefilter_497ae7ee1b464000a725313d59c61b54/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-yhr2qg8i
2021-12-21T12:13:07,896   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:726: UserWarning: Usage of dash-separated 'dist-dir' will not be supported in future versions. Please use the underscore name 'dist_dir' instead
2021-12-21T12:13:07,897     % (opt, underscore_opt)
2021-12-21T12:13:08,177   running bdist_wheel
2021-12-21T12:13:08,186   running build
2021-12-21T12:13:08,187   running build_py
2021-12-21T12:13:08,195   creating build
2021-12-21T12:13:08,195   creating build/lib
2021-12-21T12:13:08,196   creating build/lib/PHASEfilter
2021-12-21T12:13:08,198   copying PHASEfilter/__init__.py -> build/lib/PHASEfilter
2021-12-21T12:13:08,203   creating build/lib/PHASEfilter/bin
2021-12-21T12:13:08,204   copying PHASEfilter/bin/phasefilter.py -> build/lib/PHASEfilter/bin
2021-12-21T12:13:08,209   copying PHASEfilter/bin/__init__.py -> build/lib/PHASEfilter/bin
2021-12-21T12:13:08,212   copying PHASEfilter/bin/copy_raw_data_example_phasefilter.py -> build/lib/PHASEfilter/bin
2021-12-21T12:13:08,215   copying PHASEfilter/bin/make_alignment.py -> build/lib/PHASEfilter/bin
2021-12-21T12:13:08,219   copying PHASEfilter/bin/synchronize_genomes.py -> build/lib/PHASEfilter/bin
2021-12-21T12:13:08,223   copying PHASEfilter/bin/phasefilter_single.py -> build/lib/PHASEfilter/bin
2021-12-21T12:13:08,227   copying PHASEfilter/bin/reference_statistics.py -> build/lib/PHASEfilter/bin
2021-12-21T12:13:08,232   creating build/lib/PHASEfilter/tests
2021-12-21T12:13:08,234   copying PHASEfilter/tests/test_utils.py -> build/lib/PHASEfilter/tests
2021-12-21T12:13:08,238   copying PHASEfilter/tests/__init__.py -> build/lib/PHASEfilter/tests
2021-12-21T12:13:08,241   copying PHASEfilter/tests/test_software.py -> build/lib/PHASEfilter/tests
2021-12-21T12:13:08,246   copying PHASEfilter/tests/test_process_genomes.py -> build/lib/PHASEfilter/tests
2021-12-21T12:13:08,250   copying PHASEfilter/tests/test_reference.py -> build/lib/PHASEfilter/tests
2021-12-21T12:13:08,254   copying PHASEfilter/tests/test_lift_over.py -> build/lib/PHASEfilter/tests
2021-12-21T12:13:08,259   copying PHASEfilter/tests/test_vcf.py -> build/lib/PHASEfilter/tests
2021-12-21T12:13:08,264   copying PHASEfilter/tests/test_synchronization.py -> build/lib/PHASEfilter/tests
2021-12-21T12:13:08,268   copying PHASEfilter/tests/test_run_extra_software.py -> build/lib/PHASEfilter/tests
2021-12-21T12:13:08,272   creating build/lib/PHASEfilter/lib
2021-12-21T12:13:08,274   copying PHASEfilter/lib/__init__.py -> build/lib/PHASEfilter/lib
2021-12-21T12:13:08,278   creating build/lib/PHASEfilter/lib/utils
2021-12-21T12:13:08,280   copying PHASEfilter/lib/utils/lift_over_simple.py -> build/lib/PHASEfilter/lib/utils
2021-12-21T12:13:08,285   copying PHASEfilter/lib/utils/lastz_two_sequences.py -> build/lib/PHASEfilter/lib/utils
2021-12-21T12:13:08,289   copying PHASEfilter/lib/utils/__init__.py -> build/lib/PHASEfilter/lib/utils
2021-12-21T12:13:08,293   copying PHASEfilter/lib/utils/reference.py -> build/lib/PHASEfilter/lib/utils
2021-12-21T12:13:08,297   copying PHASEfilter/lib/utils/util.py -> build/lib/PHASEfilter/lib/utils
2021-12-21T12:13:08,302   copying PHASEfilter/lib/utils/testing_software.py -> build/lib/PHASEfilter/lib/utils
2021-12-21T12:13:08,305   copying PHASEfilter/lib/utils/blast_two_sequences.py -> build/lib/PHASEfilter/lib/utils
2021-12-21T12:13:08,310   copying PHASEfilter/lib/utils/vcf_process.py -> build/lib/PHASEfilter/lib/utils
2021-12-21T12:13:08,315   copying PHASEfilter/lib/utils/software.py -> build/lib/PHASEfilter/lib/utils
2021-12-21T12:13:08,318   copying PHASEfilter/lib/utils/read_gff.py -> build/lib/PHASEfilter/lib/utils
2021-12-21T12:13:08,321   copying PHASEfilter/lib/utils/run_extra_software.py -> build/lib/PHASEfilter/lib/utils
2021-12-21T12:13:08,326   creating build/lib/PHASEfilter/lib/constants
2021-12-21T12:13:08,327   copying PHASEfilter/lib/constants/__init__.py -> build/lib/PHASEfilter/lib/constants
2021-12-21T12:13:08,331   copying PHASEfilter/lib/constants/version.py -> build/lib/PHASEfilter/lib/constants
2021-12-21T12:13:08,333   copying PHASEfilter/lib/constants/constants.py -> build/lib/PHASEfilter/lib/constants
2021-12-21T12:13:08,337   creating build/lib/PHASEfilter/lib/process
2021-12-21T12:13:08,339   copying PHASEfilter/lib/process/process_genomes.py -> build/lib/PHASEfilter/lib/process
2021-12-21T12:13:08,343   copying PHASEfilter/lib/process/process_references.py -> build/lib/PHASEfilter/lib/process
2021-12-21T12:13:08,347   copying PHASEfilter/lib/process/__init__.py -> build/lib/PHASEfilter/lib/process
2021-12-21T12:13:08,349   running egg_info
2021-12-21T12:13:08,374   writing PHASEfilter.egg-info/PKG-INFO
2021-12-21T12:13:08,377   writing dependency_links to PHASEfilter.egg-info/dependency_links.txt
2021-12-21T12:13:08,381   writing entry points to PHASEfilter.egg-info/entry_points.txt
2021-12-21T12:13:08,383   writing requirements to PHASEfilter.egg-info/requires.txt
2021-12-21T12:13:08,385   writing top-level names to PHASEfilter.egg-info/top_level.txt
2021-12-21T12:13:08,404   reading manifest file 'PHASEfilter.egg-info/SOURCES.txt'
2021-12-21T12:13:08,417   writing manifest file 'PHASEfilter.egg-info/SOURCES.txt'
2021-12-21T12:13:08,431   running build_scripts
2021-12-21T12:13:08,432   creating build/scripts-3.7
2021-12-21T12:13:08,434   copying and adjusting PHASEfilter/bin/phasefilter.py -> build/scripts-3.7
2021-12-21T12:13:08,438   copying and adjusting PHASEfilter/bin/phasefilter_single.py -> build/scripts-3.7
2021-12-21T12:13:08,442   copying and adjusting PHASEfilter/bin/make_alignment.py -> build/scripts-3.7
2021-12-21T12:13:08,446   copying and adjusting PHASEfilter/bin/reference_statistics.py -> build/scripts-3.7
2021-12-21T12:13:08,448   copying and adjusting PHASEfilter/bin/synchronize_genomes.py -> build/scripts-3.7
2021-12-21T12:13:08,452   copying and adjusting PHASEfilter/bin/copy_raw_data_example_phasefilter.py -> build/scripts-3.7
2021-12-21T12:13:08,453   changing mode of build/scripts-3.7/phasefilter.py from 644 to 755
2021-12-21T12:13:08,454   changing mode of build/scripts-3.7/phasefilter_single.py from 644 to 755
2021-12-21T12:13:08,454   changing mode of build/scripts-3.7/make_alignment.py from 644 to 755
2021-12-21T12:13:08,455   changing mode of build/scripts-3.7/reference_statistics.py from 644 to 755
2021-12-21T12:13:08,455   changing mode of build/scripts-3.7/synchronize_genomes.py from 644 to 755
2021-12-21T12:13:08,456   changing mode of build/scripts-3.7/copy_raw_data_example_phasefilter.py from 644 to 755
2021-12-21T12:13:08,462   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2021-12-21T12:13:08,463     setuptools.SetuptoolsDeprecationWarning,
2021-12-21T12:13:08,466   installing to build/bdist.linux-armv7l/wheel
2021-12-21T12:13:08,467   running install
2021-12-21T12:13:08,469   running install_lib
2021-12-21T12:13:08,477   creating build/bdist.linux-armv7l
2021-12-21T12:13:08,477   creating build/bdist.linux-armv7l/wheel
2021-12-21T12:13:08,480   creating build/bdist.linux-armv7l/wheel/PHASEfilter
2021-12-21T12:13:08,482   copying build/lib/PHASEfilter/__init__.py -> build/bdist.linux-armv7l/wheel/PHASEfilter
2021-12-21T12:13:08,486   creating build/bdist.linux-armv7l/wheel/PHASEfilter/bin
2021-12-21T12:13:08,488   copying build/lib/PHASEfilter/bin/phasefilter.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/bin
2021-12-21T12:13:08,492   copying build/lib/PHASEfilter/bin/__init__.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/bin
2021-12-21T12:13:08,495   copying build/lib/PHASEfilter/bin/copy_raw_data_example_phasefilter.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/bin
2021-12-21T12:13:08,498   copying build/lib/PHASEfilter/bin/make_alignment.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/bin
2021-12-21T12:13:08,502   copying build/lib/PHASEfilter/bin/synchronize_genomes.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/bin
2021-12-21T12:13:08,507   copying build/lib/PHASEfilter/bin/phasefilter_single.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/bin
2021-12-21T12:13:08,511   copying build/lib/PHASEfilter/bin/reference_statistics.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/bin
2021-12-21T12:13:08,516   creating build/bdist.linux-armv7l/wheel/PHASEfilter/tests
2021-12-21T12:13:08,518   copying build/lib/PHASEfilter/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/tests
2021-12-21T12:13:08,522   copying build/lib/PHASEfilter/tests/__init__.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/tests
2021-12-21T12:13:08,525   copying build/lib/PHASEfilter/tests/test_software.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/tests
2021-12-21T12:13:08,529   copying build/lib/PHASEfilter/tests/test_process_genomes.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/tests
2021-12-21T12:13:08,533   copying build/lib/PHASEfilter/tests/test_reference.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/tests
2021-12-21T12:13:08,537   copying build/lib/PHASEfilter/tests/test_lift_over.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/tests
2021-12-21T12:13:08,541   copying build/lib/PHASEfilter/tests/test_vcf.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/tests
2021-12-21T12:13:08,546   copying build/lib/PHASEfilter/tests/test_synchronization.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/tests
2021-12-21T12:13:08,550   copying build/lib/PHASEfilter/tests/test_run_extra_software.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/tests
2021-12-21T12:13:08,554   creating build/bdist.linux-armv7l/wheel/PHASEfilter/lib
2021-12-21T12:13:08,556   copying build/lib/PHASEfilter/lib/__init__.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib
2021-12-21T12:13:08,560   creating build/bdist.linux-armv7l/wheel/PHASEfilter/lib/utils
2021-12-21T12:13:08,561   copying build/lib/PHASEfilter/lib/utils/lift_over_simple.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/utils
2021-12-21T12:13:08,567   copying build/lib/PHASEfilter/lib/utils/lastz_two_sequences.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/utils
2021-12-21T12:13:08,571   copying build/lib/PHASEfilter/lib/utils/__init__.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/utils
2021-12-21T12:13:08,574   copying build/lib/PHASEfilter/lib/utils/reference.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/utils
2021-12-21T12:13:08,578   copying build/lib/PHASEfilter/lib/utils/util.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/utils
2021-12-21T12:13:08,583   copying build/lib/PHASEfilter/lib/utils/testing_software.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/utils
2021-12-21T12:13:08,586   copying build/lib/PHASEfilter/lib/utils/blast_two_sequences.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/utils
2021-12-21T12:13:08,591   copying build/lib/PHASEfilter/lib/utils/vcf_process.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/utils
2021-12-21T12:13:08,596   copying build/lib/PHASEfilter/lib/utils/software.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/utils
2021-12-21T12:13:08,600   copying build/lib/PHASEfilter/lib/utils/read_gff.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/utils
2021-12-21T12:13:08,603   copying build/lib/PHASEfilter/lib/utils/run_extra_software.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/utils
2021-12-21T12:13:08,608   creating build/bdist.linux-armv7l/wheel/PHASEfilter/lib/constants
2021-12-21T12:13:08,609   copying build/lib/PHASEfilter/lib/constants/__init__.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/constants
2021-12-21T12:13:08,613   copying build/lib/PHASEfilter/lib/constants/version.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/constants
2021-12-21T12:13:08,616   copying build/lib/PHASEfilter/lib/constants/constants.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/constants
2021-12-21T12:13:08,620   creating build/bdist.linux-armv7l/wheel/PHASEfilter/lib/process
2021-12-21T12:13:08,621   copying build/lib/PHASEfilter/lib/process/process_genomes.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/process
2021-12-21T12:13:08,626   copying build/lib/PHASEfilter/lib/process/process_references.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/process
2021-12-21T12:13:08,630   copying build/lib/PHASEfilter/lib/process/__init__.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/process
2021-12-21T12:13:08,632   running install_egg_info
2021-12-21T12:13:08,647   Copying PHASEfilter.egg-info to build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.5-py3.7.egg-info
2021-12-21T12:13:08,669   running install_scripts
2021-12-21T12:13:08,788   creating build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.5.data
2021-12-21T12:13:08,788   creating build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.5.data/scripts
2021-12-21T12:13:08,791   copying build/scripts-3.7/phasefilter.py -> build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.5.data/scripts
2021-12-21T12:13:08,795   copying build/scripts-3.7/copy_raw_data_example_phasefilter.py -> build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.5.data/scripts
2021-12-21T12:13:08,798   copying build/scripts-3.7/make_alignment.py -> build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.5.data/scripts
2021-12-21T12:13:08,802   copying build/scripts-3.7/synchronize_genomes.py -> build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.5.data/scripts
2021-12-21T12:13:08,806   copying build/scripts-3.7/phasefilter_single.py -> build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.5.data/scripts
2021-12-21T12:13:08,810   copying build/scripts-3.7/reference_statistics.py -> build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.5.data/scripts
2021-12-21T12:13:08,813   changing mode of build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.5.data/scripts/phasefilter.py to 755
2021-12-21T12:13:08,813   changing mode of build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.5.data/scripts/copy_raw_data_example_phasefilter.py to 755
2021-12-21T12:13:08,814   changing mode of build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.5.data/scripts/make_alignment.py to 755
2021-12-21T12:13:08,814   changing mode of build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.5.data/scripts/synchronize_genomes.py to 755
2021-12-21T12:13:08,815   changing mode of build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.5.data/scripts/phasefilter_single.py to 755
2021-12-21T12:13:08,815   changing mode of build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.5.data/scripts/reference_statistics.py to 755
2021-12-21T12:13:08,867   creating build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.5.dist-info/WHEEL
2021-12-21T12:13:08,872   creating '/tmp/pip-wheel-yhr2qg8i/PHASEfilter-0.3.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-12-21T12:13:08,876   adding 'PHASEfilter/__init__.py'
2021-12-21T12:13:08,879   adding 'PHASEfilter/bin/__init__.py'
2021-12-21T12:13:08,882   adding 'PHASEfilter/bin/copy_raw_data_example_phasefilter.py'
2021-12-21T12:13:08,885   adding 'PHASEfilter/bin/make_alignment.py'
2021-12-21T12:13:08,888   adding 'PHASEfilter/bin/phasefilter.py'
2021-12-21T12:13:08,892   adding 'PHASEfilter/bin/phasefilter_single.py'
2021-12-21T12:13:08,894   adding 'PHASEfilter/bin/reference_statistics.py'
2021-12-21T12:13:08,897   adding 'PHASEfilter/bin/synchronize_genomes.py'
2021-12-21T12:13:08,900   adding 'PHASEfilter/lib/__init__.py'
2021-12-21T12:13:08,903   adding 'PHASEfilter/lib/constants/__init__.py'
2021-12-21T12:13:08,905   adding 'PHASEfilter/lib/constants/constants.py'
2021-12-21T12:13:08,907   adding 'PHASEfilter/lib/constants/version.py'
2021-12-21T12:13:08,910   adding 'PHASEfilter/lib/process/__init__.py'
2021-12-21T12:13:08,914   adding 'PHASEfilter/lib/process/process_genomes.py'
2021-12-21T12:13:08,917   adding 'PHASEfilter/lib/process/process_references.py'
2021-12-21T12:13:08,921   adding 'PHASEfilter/lib/utils/__init__.py'
2021-12-21T12:13:08,928   adding 'PHASEfilter/lib/utils/blast_two_sequences.py'
2021-12-21T12:13:08,931   adding 'PHASEfilter/lib/utils/lastz_two_sequences.py'
2021-12-21T12:13:08,941   adding 'PHASEfilter/lib/utils/lift_over_simple.py'
2021-12-21T12:13:08,944   adding 'PHASEfilter/lib/utils/read_gff.py'
2021-12-21T12:13:08,947   adding 'PHASEfilter/lib/utils/reference.py'
2021-12-21T12:13:08,950   adding 'PHASEfilter/lib/utils/run_extra_software.py'
2021-12-21T12:13:08,953   adding 'PHASEfilter/lib/utils/software.py'
2021-12-21T12:13:08,955   adding 'PHASEfilter/lib/utils/testing_software.py'
2021-12-21T12:13:08,962   adding 'PHASEfilter/lib/utils/util.py'
2021-12-21T12:13:08,968   adding 'PHASEfilter/lib/utils/vcf_process.py'
2021-12-21T12:13:08,972   adding 'PHASEfilter/tests/__init__.py'
2021-12-21T12:13:08,976   adding 'PHASEfilter/tests/test_lift_over.py'
2021-12-21T12:13:08,979   adding 'PHASEfilter/tests/test_process_genomes.py'
2021-12-21T12:13:08,982   adding 'PHASEfilter/tests/test_reference.py'
2021-12-21T12:13:08,984   adding 'PHASEfilter/tests/test_run_extra_software.py'
2021-12-21T12:13:08,987   adding 'PHASEfilter/tests/test_software.py'
2021-12-21T12:13:08,989   adding 'PHASEfilter/tests/test_synchronization.py'
2021-12-21T12:13:08,993   adding 'PHASEfilter/tests/test_utils.py'
2021-12-21T12:13:08,997   adding 'PHASEfilter/tests/test_vcf.py'
2021-12-21T12:13:09,002   adding 'PHASEfilter-0.3.5.data/scripts/copy_raw_data_example_phasefilter.py'
2021-12-21T12:13:09,004   adding 'PHASEfilter-0.3.5.data/scripts/make_alignment.py'
2021-12-21T12:13:09,008   adding 'PHASEfilter-0.3.5.data/scripts/phasefilter.py'
2021-12-21T12:13:09,011   adding 'PHASEfilter-0.3.5.data/scripts/phasefilter_single.py'
2021-12-21T12:13:09,014   adding 'PHASEfilter-0.3.5.data/scripts/reference_statistics.py'
2021-12-21T12:13:09,017   adding 'PHASEfilter-0.3.5.data/scripts/synchronize_genomes.py'
2021-12-21T12:13:09,021   adding 'PHASEfilter-0.3.5.dist-info/METADATA'
2021-12-21T12:13:09,023   adding 'PHASEfilter-0.3.5.dist-info/WHEEL'
2021-12-21T12:13:09,024   adding 'PHASEfilter-0.3.5.dist-info/entry_points.txt'
2021-12-21T12:13:09,026   adding 'PHASEfilter-0.3.5.dist-info/top_level.txt'
2021-12-21T12:13:09,027   adding 'PHASEfilter-0.3.5.dist-info/RECORD'
2021-12-21T12:13:09,034   removing build/bdist.linux-armv7l/wheel
2021-12-21T12:13:09,180   Building wheel for phasefilter (setup.py): finished with status 'done'
2021-12-21T12:13:09,187   Created wheel for phasefilter: filename=PHASEfilter-0.3.5-py3-none-any.whl size=86345 sha256=50bd2b14fbcf7b4cb03a16b7f74d54beaefebe9c588361186ad7d712b61982da
2021-12-21T12:13:09,187   Stored in directory: /tmp/pip-ephem-wheel-cache-3wks7doy/wheels/db/da/96/c9803802fa588e71b0a91be6ad9d5d1fd0cd15c7971994c59f
2021-12-21T12:13:09,211 Successfully built phasefilter
2021-12-21T12:13:09,224 Removed build tracker: '/tmp/pip-req-tracker-k3o0y9n3'