2021-12-23T12:44:00,694 Created temporary directory: /tmp/pip-ephem-wheel-cache-tegvx5jm
2021-12-23T12:44:00,699 Created temporary directory: /tmp/pip-req-tracker-71rmmb10
2021-12-23T12:44:00,700 Initialized build tracking at /tmp/pip-req-tracker-71rmmb10
2021-12-23T12:44:00,701 Created build tracker: /tmp/pip-req-tracker-71rmmb10
2021-12-23T12:44:00,701 Entered build tracker: /tmp/pip-req-tracker-71rmmb10
2021-12-23T12:44:00,702 Created temporary directory: /tmp/pip-wheel-pyl39zx8
2021-12-23T12:44:00,772 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-12-23T12:44:00,777 2 location(s) to search for versions of ilus:
2021-12-23T12:44:00,777 * https://pypi.org/simple/ilus/
2021-12-23T12:44:00,777 * https://www.piwheels.org/simple/ilus/
2021-12-23T12:44:00,778 Fetching project page and analyzing links: https://pypi.org/simple/ilus/
2021-12-23T12:44:00,779 Getting page https://pypi.org/simple/ilus/
2021-12-23T12:44:00,783 Found index url https://pypi.org/simple
2021-12-23T12:44:00,985   Found link https://files.pythonhosted.org/packages/8e/55/649bd50aabb4f4b880b612986acaa44a19b692302b7a5a922def75599f5c/ilus-0.1.0.tar.gz#sha256=767a37912251f975aa58152f257c6e58fcc3e7a3bda060c85cda4f26b10a827f (from https://pypi.org/simple/ilus/), version: 0.1.0
2021-12-23T12:44:00,986   Found link https://files.pythonhosted.org/packages/64/d1/c750f25d5de6a9fc5a603feed5c7059c5c7f1aa6809fa9c58e1381be2ca2/ilus-1.0.0.tar.gz#sha256=bdb974377abaecf6074d1992de8f925bc67d95f4fdd0bf7aa47b23187f661ced (from https://pypi.org/simple/ilus/), version: 1.0.0
2021-12-23T12:44:00,988   Found link https://files.pythonhosted.org/packages/c8/bf/3716a026b6ebcb7028105356ac7922739ab7872a63eb43f7dfd886c5c5db/ilus-1.0.1.tar.gz#sha256=3fb04424d0f6cd75ad0dc7ffbbd8fead26054fc6c8bd04b8e90fc9799f23ce21 (from https://pypi.org/simple/ilus/), version: 1.0.1
2021-12-23T12:44:00,988   Found link https://files.pythonhosted.org/packages/33/4a/0974529431296c5238c63eb91442bbe1176b16f82ce971cf237dac4c8627/ilus-1.0.2.tar.gz#sha256=e80d3144c58fe3b341114dafe035c4d4826258a7d0c8a109cbd5dd780201f228 (from https://pypi.org/simple/ilus/), version: 1.0.2
2021-12-23T12:44:00,989   Found link https://files.pythonhosted.org/packages/5e/1b/630c5a16f2e4a5e5a4c28e15a20f787daf1e0b0472d1a3439f4d18fb4871/ilus-1.0.3.tar.gz#sha256=abe78bfca9a55ef26dc5b261ce5d24855d0c56b6f5d06d3603ca758a4a745e22 (from https://pypi.org/simple/ilus/), version: 1.0.3
2021-12-23T12:44:00,990   Found link https://files.pythonhosted.org/packages/7d/90/c6c93779518796a59e0022ea5177b93bf0552e83160e9d1e8fafe34dfdec/ilus-1.0.4.tar.gz#sha256=b58490f0a9f5b7f0b95c158b01da234e7c53a3a14dab6ffce1df44d9a68497cb (from https://pypi.org/simple/ilus/), version: 1.0.4
2021-12-23T12:44:00,990   Found link https://files.pythonhosted.org/packages/f2/91/43458918520aa40a030b566ce3596210a4d855a84e3d15ddaa01830a0e8d/ilus-1.1.0.tar.gz#sha256=6718f6974318107260fe6346af26ada4470cd5c0b567000086bfb2484c9d443c (from https://pypi.org/simple/ilus/), version: 1.1.0
2021-12-23T12:44:00,991   Found link https://files.pythonhosted.org/packages/ef/90/20e1da660596a5f39ff1da1bd0ba4a484bb229ace3bfc77b0169d1636acd/ilus-1.1.1.tar.gz#sha256=aca09f6f8d403a4fabeb5cf1b4b1533da853121cef460e209314e65edd26941b (from https://pypi.org/simple/ilus/), version: 1.1.1
2021-12-23T12:44:00,992 Fetching project page and analyzing links: https://www.piwheels.org/simple/ilus/
2021-12-23T12:44:00,992 Getting page https://www.piwheels.org/simple/ilus/
2021-12-23T12:44:00,994 Found index url https://www.piwheels.org/simple
2021-12-23T12:44:01,199   Skipping link: No binaries permitted for ilus: https://www.piwheels.org/simple/ilus/ilus-1.0.0-py3-none-any.whl#sha256=f6edd0ca8dd180f27744489a2d97500ea9bbf8a31d1fd67abd9eb7b33fc5e275 (from https://www.piwheels.org/simple/ilus/)
2021-12-23T12:44:01,199   Skipping link: No binaries permitted for ilus: https://www.piwheels.org/simple/ilus/ilus-1.0.1-py3-none-any.whl#sha256=b1787a95b35aa0f798fa13b7407a034445b46252d3453354d569d03a9bd458ce (from https://www.piwheels.org/simple/ilus/)
2021-12-23T12:44:01,200   Skipping link: No binaries permitted for ilus: https://www.piwheels.org/simple/ilus/ilus-1.0.2-py3-none-any.whl#sha256=d390a4ba1fee50a6e7041c77c317907d02dc3a78aa4f6c43699ca60147b43161 (from https://www.piwheels.org/simple/ilus/)
2021-12-23T12:44:01,201   Skipping link: No binaries permitted for ilus: https://www.piwheels.org/simple/ilus/ilus-1.0.4-py3-none-any.whl#sha256=e882e54d1fda965bbe97cd5c70a977824f1d81e79091d8679ea47c84bdd167f6 (from https://www.piwheels.org/simple/ilus/)
2021-12-23T12:44:01,201   Skipping link: No binaries permitted for ilus: https://www.piwheels.org/simple/ilus/ilus-1.1.0-py3-none-any.whl#sha256=d696434a6d520599e55cead1b1aed46c68b4068394416117d1cadd7f36db6c7d (from https://www.piwheels.org/simple/ilus/)
2021-12-23T12:44:01,201 Skipping link: not a file: https://www.piwheels.org/simple/ilus/
2021-12-23T12:44:01,202 Skipping link: not a file: https://pypi.org/simple/ilus/
2021-12-23T12:44:01,237 Given no hashes to check 1 links for project 'ilus': discarding no candidates
2021-12-23T12:44:01,266 Collecting ilus==1.1.1
2021-12-23T12:44:01,269   Created temporary directory: /tmp/pip-unpack-gecx_jr5
2021-12-23T12:44:01,354   Downloading ilus-1.1.1.tar.gz (44 kB)
2021-12-23T12:44:01,506   Added ilus==1.1.1 from https://files.pythonhosted.org/packages/ef/90/20e1da660596a5f39ff1da1bd0ba4a484bb229ace3bfc77b0169d1636acd/ilus-1.1.1.tar.gz#sha256=aca09f6f8d403a4fabeb5cf1b4b1533da853121cef460e209314e65edd26941b to build tracker '/tmp/pip-req-tracker-71rmmb10'
2021-12-23T12:44:01,507   Running setup.py (path:/tmp/pip-wheel-pyl39zx8/ilus_49e52d948b2c4871ba86dc04a5ec4e12/setup.py) egg_info for package ilus
2021-12-23T12:44:01,508   Created temporary directory: /tmp/pip-pip-egg-info-c0ictva0
2021-12-23T12:44:01,509   Preparing metadata (setup.py): started
2021-12-23T12:44:01,509   Running command python setup.py egg_info
2021-12-23T12:44:03,267   running egg_info
2021-12-23T12:44:03,271   creating /tmp/pip-pip-egg-info-c0ictva0/ilus.egg-info
2021-12-23T12:44:03,273   writing /tmp/pip-pip-egg-info-c0ictva0/ilus.egg-info/PKG-INFO
2021-12-23T12:44:03,279   writing dependency_links to /tmp/pip-pip-egg-info-c0ictva0/ilus.egg-info/dependency_links.txt
2021-12-23T12:44:03,281   writing entry points to /tmp/pip-pip-egg-info-c0ictva0/ilus.egg-info/entry_points.txt
2021-12-23T12:44:03,284   writing requirements to /tmp/pip-pip-egg-info-c0ictva0/ilus.egg-info/requires.txt
2021-12-23T12:44:03,285   writing top-level names to /tmp/pip-pip-egg-info-c0ictva0/ilus.egg-info/top_level.txt
2021-12-23T12:44:03,288   writing manifest file '/tmp/pip-pip-egg-info-c0ictva0/ilus.egg-info/SOURCES.txt'
2021-12-23T12:44:03,312   reading manifest file '/tmp/pip-pip-egg-info-c0ictva0/ilus.egg-info/SOURCES.txt'
2021-12-23T12:44:03,315   adding license file 'LICENSE.txt'
2021-12-23T12:44:03,321   writing manifest file '/tmp/pip-pip-egg-info-c0ictva0/ilus.egg-info/SOURCES.txt'
2021-12-23T12:44:03,424   Preparing metadata (setup.py): finished with status 'done'
2021-12-23T12:44:03,437   Source in /tmp/pip-wheel-pyl39zx8/ilus_49e52d948b2c4871ba86dc04a5ec4e12 has version 1.1.1, which satisfies requirement ilus==1.1.1 from https://files.pythonhosted.org/packages/ef/90/20e1da660596a5f39ff1da1bd0ba4a484bb229ace3bfc77b0169d1636acd/ilus-1.1.1.tar.gz#sha256=aca09f6f8d403a4fabeb5cf1b4b1533da853121cef460e209314e65edd26941b
2021-12-23T12:44:03,439   Removed ilus==1.1.1 from https://files.pythonhosted.org/packages/ef/90/20e1da660596a5f39ff1da1bd0ba4a484bb229ace3bfc77b0169d1636acd/ilus-1.1.1.tar.gz#sha256=aca09f6f8d403a4fabeb5cf1b4b1533da853121cef460e209314e65edd26941b from build tracker '/tmp/pip-req-tracker-71rmmb10'
2021-12-23T12:44:03,453 Created temporary directory: /tmp/pip-unpack-odphwok5
2021-12-23T12:44:03,454 Building wheels for collected packages: ilus
2021-12-23T12:44:03,461   Created temporary directory: /tmp/pip-wheel-_wr0rr0f
2021-12-23T12:44:03,462   Building wheel for ilus (setup.py): started
2021-12-23T12:44:03,463   Destination directory: /tmp/pip-wheel-_wr0rr0f
2021-12-23T12:44:03,463   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-pyl39zx8/ilus_49e52d948b2c4871ba86dc04a5ec4e12/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-pyl39zx8/ilus_49e52d948b2c4871ba86dc04a5ec4e12/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-_wr0rr0f
2021-12-23T12:44:05,199   running bdist_wheel
2021-12-23T12:44:05,207   running build
2021-12-23T12:44:05,208   running build_py
2021-12-23T12:44:05,217   creating build
2021-12-23T12:44:05,217   creating build/lib
2021-12-23T12:44:05,218   creating build/lib/ilus
2021-12-23T12:44:05,220   copying ilus/main.py -> build/lib/ilus
2021-12-23T12:44:05,225   copying ilus/__init__.py -> build/lib/ilus
2021-12-23T12:44:05,227   copying ilus/utils.py -> build/lib/ilus
2021-12-23T12:44:05,232   creating build/lib/ilus/modules
2021-12-23T12:44:05,233   copying ilus/modules/__init__.py -> build/lib/ilus/modules
2021-12-23T12:44:05,237   creating build/lib/ilus/pipeline
2021-12-23T12:44:05,238   copying ilus/pipeline/wgs.py -> build/lib/ilus/pipeline
2021-12-23T12:44:05,243   copying ilus/pipeline/__init__.py -> build/lib/ilus/pipeline
2021-12-23T12:44:05,246   creating build/lib/ilus/launch
2021-12-23T12:44:05,247   copying ilus/launch/runfunction.py -> build/lib/ilus/launch
2021-12-23T12:44:05,252   copying ilus/launch/__init__.py -> build/lib/ilus/launch
2021-12-23T12:44:05,255   creating build/lib/ilus/modules/ngsaligner
2021-12-23T12:44:05,257   copying ilus/modules/ngsaligner/bwa.py -> build/lib/ilus/modules/ngsaligner
2021-12-23T12:44:05,260   copying ilus/modules/ngsaligner/__init__.py -> build/lib/ilus/modules/ngsaligner
2021-12-23T12:44:05,264   creating build/lib/ilus/modules/variants
2021-12-23T12:44:05,265   copying ilus/modules/variants/__init__.py -> build/lib/ilus/modules/variants
2021-12-23T12:44:05,268   copying ilus/modules/variants/gatk.py -> build/lib/ilus/modules/variants
2021-12-23T12:44:05,273   creating build/lib/ilus/modules/vcf
2021-12-23T12:44:05,275   copying ilus/modules/vcf/bcftools.py -> build/lib/ilus/modules/vcf
2021-12-23T12:44:05,278   copying ilus/modules/vcf/__init__.py -> build/lib/ilus/modules/vcf
2021-12-23T12:44:05,281   creating build/lib/ilus/modules/summary
2021-12-23T12:44:05,283   copying ilus/modules/summary/bam.py -> build/lib/ilus/modules/summary
2021-12-23T12:44:05,286   copying ilus/modules/summary/__init__.py -> build/lib/ilus/modules/summary
2021-12-23T12:44:05,288   running egg_info
2021-12-23T12:44:05,312   writing ilus.egg-info/PKG-INFO
2021-12-23T12:44:05,318   writing dependency_links to ilus.egg-info/dependency_links.txt
2021-12-23T12:44:05,321   writing entry points to ilus.egg-info/entry_points.txt
2021-12-23T12:44:05,323   writing requirements to ilus.egg-info/requires.txt
2021-12-23T12:44:05,325   writing top-level names to ilus.egg-info/top_level.txt
2021-12-23T12:44:05,341   reading manifest file 'ilus.egg-info/SOURCES.txt'
2021-12-23T12:44:05,345   adding license file 'LICENSE.txt'
2021-12-23T12:44:05,351   writing manifest file 'ilus.egg-info/SOURCES.txt'
2021-12-23T12:44:05,368   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2021-12-23T12:44:05,368     setuptools.SetuptoolsDeprecationWarning,
2021-12-23T12:44:05,373   installing to build/bdist.linux-armv7l/wheel
2021-12-23T12:44:05,373   running install
2021-12-23T12:44:05,375   running install_lib
2021-12-23T12:44:05,382   creating build/bdist.linux-armv7l
2021-12-23T12:44:05,382   creating build/bdist.linux-armv7l/wheel
2021-12-23T12:44:05,385   creating build/bdist.linux-armv7l/wheel/ilus
2021-12-23T12:44:05,388   creating build/bdist.linux-armv7l/wheel/ilus/modules
2021-12-23T12:44:05,391   creating build/bdist.linux-armv7l/wheel/ilus/modules/ngsaligner
2021-12-23T12:44:05,392   copying build/lib/ilus/modules/ngsaligner/bwa.py -> build/bdist.linux-armv7l/wheel/ilus/modules/ngsaligner
2021-12-23T12:44:05,396   copying build/lib/ilus/modules/ngsaligner/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules/ngsaligner
2021-12-23T12:44:05,399   creating build/bdist.linux-armv7l/wheel/ilus/modules/variants
2021-12-23T12:44:05,401   copying build/lib/ilus/modules/variants/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules/variants
2021-12-23T12:44:05,404   copying build/lib/ilus/modules/variants/gatk.py -> build/bdist.linux-armv7l/wheel/ilus/modules/variants
2021-12-23T12:44:05,409   creating build/bdist.linux-armv7l/wheel/ilus/modules/vcf
2021-12-23T12:44:05,411   copying build/lib/ilus/modules/vcf/bcftools.py -> build/bdist.linux-armv7l/wheel/ilus/modules/vcf
2021-12-23T12:44:05,414   copying build/lib/ilus/modules/vcf/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules/vcf
2021-12-23T12:44:05,418   creating build/bdist.linux-armv7l/wheel/ilus/modules/summary
2021-12-23T12:44:05,419   copying build/lib/ilus/modules/summary/bam.py -> build/bdist.linux-armv7l/wheel/ilus/modules/summary
2021-12-23T12:44:05,423   copying build/lib/ilus/modules/summary/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules/summary
2021-12-23T12:44:05,425   copying build/lib/ilus/modules/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules
2021-12-23T12:44:05,428   copying build/lib/ilus/main.py -> build/bdist.linux-armv7l/wheel/ilus
2021-12-23T12:44:05,432   copying build/lib/ilus/__init__.py -> build/bdist.linux-armv7l/wheel/ilus
2021-12-23T12:44:05,435   creating build/bdist.linux-armv7l/wheel/ilus/pipeline
2021-12-23T12:44:05,437   copying build/lib/ilus/pipeline/wgs.py -> build/bdist.linux-armv7l/wheel/ilus/pipeline
2021-12-23T12:44:05,441   copying build/lib/ilus/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/pipeline
2021-12-23T12:44:05,445   creating build/bdist.linux-armv7l/wheel/ilus/launch
2021-12-23T12:44:05,446   copying build/lib/ilus/launch/runfunction.py -> build/bdist.linux-armv7l/wheel/ilus/launch
2021-12-23T12:44:05,451   copying build/lib/ilus/launch/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/launch
2021-12-23T12:44:05,454   copying build/lib/ilus/utils.py -> build/bdist.linux-armv7l/wheel/ilus
2021-12-23T12:44:05,456   running install_egg_info
2021-12-23T12:44:05,472   Copying ilus.egg-info to build/bdist.linux-armv7l/wheel/ilus-1.1.1-py3.7.egg-info
2021-12-23T12:44:05,496   running install_scripts
2021-12-23T12:44:05,659   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2021-12-23T12:44:05,667   creating build/bdist.linux-armv7l/wheel/ilus-1.1.1.dist-info/WHEEL
2021-12-23T12:44:05,672   creating '/tmp/pip-wheel-_wr0rr0f/ilus-1.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-12-23T12:44:05,676   adding 'ilus/__init__.py'
2021-12-23T12:44:05,679   adding 'ilus/main.py'
2021-12-23T12:44:05,681   adding 'ilus/utils.py'
2021-12-23T12:44:05,684   adding 'ilus/launch/__init__.py'
2021-12-23T12:44:05,688   adding 'ilus/launch/runfunction.py'
2021-12-23T12:44:05,691   adding 'ilus/modules/__init__.py'
2021-12-23T12:44:05,694   adding 'ilus/modules/ngsaligner/__init__.py'
2021-12-23T12:44:05,696   adding 'ilus/modules/ngsaligner/bwa.py'
2021-12-23T12:44:05,699   adding 'ilus/modules/summary/__init__.py'
2021-12-23T12:44:05,701   adding 'ilus/modules/summary/bam.py'
2021-12-23T12:44:05,704   adding 'ilus/modules/variants/__init__.py'
2021-12-23T12:44:05,707   adding 'ilus/modules/variants/gatk.py'
2021-12-23T12:44:05,710   adding 'ilus/modules/vcf/__init__.py'
2021-12-23T12:44:05,712   adding 'ilus/modules/vcf/bcftools.py'
2021-12-23T12:44:05,714   adding 'ilus/pipeline/__init__.py'
2021-12-23T12:44:05,717   adding 'ilus/pipeline/wgs.py'
2021-12-23T12:44:05,722   adding 'ilus-1.1.1.dist-info/LICENSE.txt'
2021-12-23T12:44:05,730   adding 'ilus-1.1.1.dist-info/METADATA'
2021-12-23T12:44:05,732   adding 'ilus-1.1.1.dist-info/WHEEL'
2021-12-23T12:44:05,733   adding 'ilus-1.1.1.dist-info/entry_points.txt'
2021-12-23T12:44:05,735   adding 'ilus-1.1.1.dist-info/top_level.txt'
2021-12-23T12:44:05,736   adding 'ilus-1.1.1.dist-info/RECORD'
2021-12-23T12:44:05,738   removing build/bdist.linux-armv7l/wheel
2021-12-23T12:44:05,872   Building wheel for ilus (setup.py): finished with status 'done'
2021-12-23T12:44:05,877   Created wheel for ilus: filename=ilus-1.1.1-py3-none-any.whl size=26527 sha256=e6c1337f5257980949564552b79bff1f389200cf3ad322a5f849728263b321f4
2021-12-23T12:44:05,877   Stored in directory: /tmp/pip-ephem-wheel-cache-tegvx5jm/wheels/b0/82/1e/c01ec0a54132b0c993926381623324e5d976bf00db53c36412
2021-12-23T12:44:05,908 Successfully built ilus
2021-12-23T12:44:05,916 Removed build tracker: '/tmp/pip-req-tracker-71rmmb10'