2021-12-28T19:57:45,867 Created temporary directory: /tmp/pip-ephem-wheel-cache-kn4_ydww
2021-12-28T19:57:45,872 Created temporary directory: /tmp/pip-req-tracker-408ci_9y
2021-12-28T19:57:45,873 Initialized build tracking at /tmp/pip-req-tracker-408ci_9y
2021-12-28T19:57:45,873 Created build tracker: /tmp/pip-req-tracker-408ci_9y
2021-12-28T19:57:45,874 Entered build tracker: /tmp/pip-req-tracker-408ci_9y
2021-12-28T19:57:45,875 Created temporary directory: /tmp/pip-wheel-02l1szng
2021-12-28T19:57:45,945 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-12-28T19:57:45,950 2 location(s) to search for versions of pdb2pqr:
2021-12-28T19:57:45,950 * https://pypi.org/simple/pdb2pqr/
2021-12-28T19:57:45,950 * https://www.piwheels.org/simple/pdb2pqr/
2021-12-28T19:57:45,951 Fetching project page and analyzing links: https://pypi.org/simple/pdb2pqr/
2021-12-28T19:57:45,953 Getting page https://pypi.org/simple/pdb2pqr/
2021-12-28T19:57:45,956 Found index url https://pypi.org/simple
2021-12-28T19:57:46,188   Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/57/04/bb33da3ec20e6dcd370269adf26227bb89f603fc7049c90e817e6483d5d6/pdb2pqr-3.0.0-py3-none-any.whl#sha256=86fc234135d79795d6c32222eb5d98e3aee27f2055d2965be59500524ef3c2e2 (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5)
2021-12-28T19:57:46,190   Found link https://files.pythonhosted.org/packages/31/a3/fadf0c0afc577bbdcfdf145b47d2954e7594c83e1c3e150f510bf4757166/pdb2pqr-3.0.0.tar.gz#sha256=6a75fb23c517ec07dc52c8cf95f9cf3d3578de98dddc21c275c61be21c5cf3e9 (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.0.0
2021-12-28T19:57:46,191   Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/28/f5/b122ef1691714e4c625862ed3c85aa859c4c242c3611aa99c0a271f403cb/pdb2pqr-3.0.1-py3-none-any.whl#sha256=49798d226cf30286044519e45c57753d21f370aed2e0f9af3f27f402580a5368 (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5)
2021-12-28T19:57:46,193   Found link https://files.pythonhosted.org/packages/03/1b/601c04590dcc7b466b8f7f49241b26907c82c3864184ce805b4e2736f814/pdb2pqr-3.0.1.tar.gz#sha256=15ac0ce77dc17fb459092aca12cc7c2c070904f77914f1197282e28f418b6bd0 (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.0.1
2021-12-28T19:57:46,193   Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/f0/49/fa1e47786b520ca3f1f948ea516283d86ecd0c2d3ba46dd736cc196d77c6/pdb2pqr-3.1.0-py2.py3-none-any.whl#sha256=ef058118954eb0d5fc882c23a6ab8cf132f8d6a60409dd8cf022efb3f4d225ef (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5)
2021-12-28T19:57:46,195   Found link https://files.pythonhosted.org/packages/6c/c1/febb6b4e8de3287e2176712a99c4095f0fdd1f9e73e21bfb0824c7ac9368/pdb2pqr-3.1.0.tar.gz#sha256=a6f5e2eefbd8bd2a072a89ee4026977de02dadd56e921095afac88d596b63820 (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.1.0
2021-12-28T19:57:46,195   Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/f5/37/ffde1f53a2f3ac6907aeddbba94b04d542d6e5e70ba0692d6b424578f4bf/pdb2pqr-3.2.0-py2.py3-none-any.whl#sha256=f34168f78fb1f96e4f4400019d796c30f6ef034f79e036a676e4e74675a201bf (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5)
2021-12-28T19:57:46,197   Found link https://files.pythonhosted.org/packages/09/b3/69d494c4ed5340461401abee7f61958d076084c00d2e3139c82f5048c43b/pdb2pqr-3.2.0.tar.gz#sha256=28a641e449f11dc364401174917d52a4c3cf381b1a8495966bb2a403faacc470 (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.2.0
2021-12-28T19:57:46,197   Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/11/44/334834c4d5919ce959a6c2f5549cb7517206dde16ae4c18f1efd7ad2e39d/pdb2pqr-3.2.3-py2.py3-none-any.whl#sha256=79d23e318369a3a30465d92b2eb986457376c6d06485e2dfa3bc86f358c4e0b2 (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5)
2021-12-28T19:57:46,198   Found link https://files.pythonhosted.org/packages/22/47/f9064d5b3c2ff71028e34a4acc3426e9b74ad9abdbfddea7f482f8c70c5d/pdb2pqr-3.2.3.tar.gz#sha256=0abcf5992bcb8d9beffc9ff7fa199c0b8f0e52d8a158b4c9ee7792f60ef1a66f (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.2.3
2021-12-28T19:57:46,199   Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/e0/27/2d5241c1187469486f9ee4ee7ec697a29d0c891b9547fe9cfb72abeb467a/pdb2pqr-3.3.1-py2.py3-none-any.whl#sha256=b46f548894bc9b7d3730bb97ed43253101a937d622329d462254a64fc6f9318c (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5)
2021-12-28T19:57:46,200   Found link https://files.pythonhosted.org/packages/f6/d4/fd62fcddf45ff39e0489315104088a429a58a25381a283a1350fbb3b0b40/pdb2pqr-3.3.1.tar.gz#sha256=ea4277f76c91ab39c4be7efa448afec7d426934f8880dbe9ffcb6f65b73f38ca (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.3.1
2021-12-28T19:57:46,201   Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/1c/16/395dc9c27fe1077f932d2b6a0b32018c429bbb10932cd3c583f804fcda17/pdb2pqr-3.3.2-py2.py3-none-any.whl#sha256=ed0545a3c7142672093fa77d8ee6ed3f2f1f0887ff0cb38f8abff148424d686c (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5)
2021-12-28T19:57:46,202   Found link https://files.pythonhosted.org/packages/c1/3d/f8603744a97b3a3c267594e27940fd841c118e4524eeab5d4a0168e19c6c/pdb2pqr-3.3.2.tar.gz#sha256=2689775af1946acd01e20309b13f99c1ad7618800c70fec080b0dcadb2ae799d (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.3.2
2021-12-28T19:57:46,203   Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/36/48/3ea2d9687b55e17e941b5ffef0979d405cf92514844adca00b49d4e35ed9/pdb2pqr-3.3.3-py2.py3-none-any.whl#sha256=20ae7d9b1b3eaf99544b9ef150885bb988ec193545748c4ab19330c0630775f0 (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5)
2021-12-28T19:57:46,204   Found link https://files.pythonhosted.org/packages/50/ca/94c0374c856d75adea48a329525815525b36399f96c432d2db9120148560/pdb2pqr-3.3.3.tar.gz#sha256=75b92503b1fceba131ca4f7ea1deee1d06b6680d7aef6c399e4d33e48634e3f1 (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.3.3
2021-12-28T19:57:46,205   Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/90/e5/e7cc5d7f44dc659c5f69ed862bacb974435f5a19559aea2a13c4a86b956f/pdb2pqr-3.4.0-py2.py3-none-any.whl#sha256=4edd13c6be5e8a944e17a7f1fb54ccaf94c8e20e59f7435541340c5dea279e02 (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5)
2021-12-28T19:57:46,206   Found link https://files.pythonhosted.org/packages/12/96/1a9352c33ac2ad956c0a2911362670a0a64ba5f1303f54f464193ce65dc3/pdb2pqr-3.4.0.tar.gz#sha256=e902d746db3577e8438d1c59ce2b00c15b86dd96db84534ad95cfe4436669a00 (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.4.0
2021-12-28T19:57:46,207   Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/8b/96/f515e275d60a13d83bc4c92a1339278ea8e9edc8ba1e2fcedf3ce96a5c5a/pdb2pqr-3.4.1-py2.py3-none-any.whl#sha256=7141e74838891312e64cc699609cf9f22fe3d57f6513fe4b99d96a2cba7bc246 (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5)
2021-12-28T19:57:46,208   Found link https://files.pythonhosted.org/packages/49/6c/be5f979870cf606a4e3d0827d60fa7f10b98534cd1eca8c24b2fd3856102/pdb2pqr-3.4.1.tar.gz#sha256=9e8cabd984f8e31f010bda0a3e81c87ad93f403d1fd36c787627e5134f7542ba (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.4.1
2021-12-28T19:57:46,209 Fetching project page and analyzing links: https://www.piwheels.org/simple/pdb2pqr/
2021-12-28T19:57:46,209 Getting page https://www.piwheels.org/simple/pdb2pqr/
2021-12-28T19:57:46,212 Found index url https://www.piwheels.org/simple
2021-12-28T19:57:46,451   Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.0.0-py3-none-any.whl#sha256=a02bc4a4de53569304213bc157fcbe9c3c1580dcf7b07aa5c20974ca21550713 (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5)
2021-12-28T19:57:46,452   Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.0.1-py3-none-any.whl#sha256=e59b47a1ba797bb5d830ae52bfdf563c14aa0016c439e3e35cafa3aa22a3e260 (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5)
2021-12-28T19:57:46,452   Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.1.0-py2.py3-none-any.whl#sha256=ef058118954eb0d5fc882c23a6ab8cf132f8d6a60409dd8cf022efb3f4d225ef (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5)
2021-12-28T19:57:46,453   Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.2.0-py2.py3-none-any.whl#sha256=7a2f4fe33d3598d52b6895d6635c380179ed5ade036c7b83ee26765336a0b187 (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5)
2021-12-28T19:57:46,453   Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.2.3-py2.py3-none-any.whl#sha256=455d630eef5f5f6a1b65686d210d53e978e160a40de89a83d93c4308b7e6099e (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5)
2021-12-28T19:57:46,454   Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.3.1-py2.py3-none-any.whl#sha256=19e80123ca7c1b04e3819c10d57115c440f15abfd004052ae03226e8b2731f6a (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5)
2021-12-28T19:57:46,454   Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.3.2-py2.py3-none-any.whl#sha256=bbaecead433479ce317d803f228dfd566fb8b8a8dd873136ea9bbe27c7dffcbd (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5)
2021-12-28T19:57:46,455   Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.3.3-py2.py3-none-any.whl#sha256=f0ca1a26dd987919923b43c549d287dd1a737e9bf2a3c73e7f1b26d9019d8c8b (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5)
2021-12-28T19:57:46,455   Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.4.0-py2.py3-none-any.whl#sha256=66d51bc3ed423ed50cb937684ad24cf7fd09f3a5fbe2c5c5fb543d8b8b8593d7 (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5)
2021-12-28T19:57:46,456 Skipping link: not a file: https://www.piwheels.org/simple/pdb2pqr/
2021-12-28T19:57:46,456 Skipping link: not a file: https://pypi.org/simple/pdb2pqr/
2021-12-28T19:57:46,491 Given no hashes to check 1 links for project 'pdb2pqr': discarding no candidates
2021-12-28T19:57:46,520 Collecting pdb2pqr==3.4.1
2021-12-28T19:57:46,524   Created temporary directory: /tmp/pip-unpack-97b011yq
2021-12-28T19:57:46,609   Downloading pdb2pqr-3.4.1.tar.gz (13.7 MB)
2021-12-28T19:57:54,823   Added pdb2pqr==3.4.1 from https://files.pythonhosted.org/packages/49/6c/be5f979870cf606a4e3d0827d60fa7f10b98534cd1eca8c24b2fd3856102/pdb2pqr-3.4.1.tar.gz#sha256=9e8cabd984f8e31f010bda0a3e81c87ad93f403d1fd36c787627e5134f7542ba to build tracker '/tmp/pip-req-tracker-408ci_9y'
2021-12-28T19:57:54,831   Created temporary directory: /tmp/pip-build-env-qrtq4mzp
2021-12-28T19:57:54,845   Created temporary directory: /tmp/pip-standalone-pip-n86jjolo
2021-12-28T19:57:56,518   Installing build dependencies: started
2021-12-28T19:57:56,519   Running command /usr/bin/python3 /tmp/pip-standalone-pip-n86jjolo/__env_pip__.zip/pip install --ignore-installed --no-user --prefix /tmp/pip-build-env-qrtq4mzp/overlay --no-warn-script-location -v --no-binary pdb2pqr --only-binary :none: -i https://pypi.org/simple --extra-index-url https://www.piwheels.org/simple --prefer-binary -- 'setuptools>=40.8.0' wheel
2021-12-28T19:58:04,291   Using pip 21.3.1 from /tmp/pip-standalone-pip-n86jjolo/__env_pip__.zip/pip (python 3.7)
2021-12-28T19:58:05,074   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-12-28T19:58:09,829   Collecting setuptools>=40.8.0
2021-12-28T19:58:10,051     Using cached https://www.piwheels.org/simple/setuptools/setuptools-60.1.0-py3-none-any.whl (952 kB)
2021-12-28T19:58:10,766   Collecting wheel
2021-12-28T19:58:10,802     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2021-12-28T19:58:14,395   Installing collected packages: wheel, setuptools
2021-12-28T19:58:14,654     Creating /tmp/pip-build-env-qrtq4mzp/overlay/bin
2021-12-28T19:58:14,657     changing mode of /tmp/pip-build-env-qrtq4mzp/overlay/bin/wheel to 755
2021-12-28T19:58:17,663   Successfully installed setuptools-60.1.0 wheel-0.37.1
2021-12-28T19:58:18,205   Installing build dependencies: finished with status 'done'
2021-12-28T19:58:18,225   Getting requirements to build wheel: started
2021-12-28T19:58:18,226   Running command /usr/bin/python3 /usr/local/lib/python3.7/dist-packages/pip/_vendor/pep517/in_process/_in_process.py get_requires_for_build_wheel /tmp/tmpcw44jdgd
2021-12-28T19:58:19,920   running egg_info
2021-12-28T19:58:19,924   writing pdb2pqr.egg-info/PKG-INFO
2021-12-28T19:58:19,927   writing dependency_links to pdb2pqr.egg-info/dependency_links.txt
2021-12-28T19:58:19,930   writing entry points to pdb2pqr.egg-info/entry_points.txt
2021-12-28T19:58:19,933   writing requirements to pdb2pqr.egg-info/requires.txt
2021-12-28T19:58:19,935   writing top-level names to pdb2pqr.egg-info/top_level.txt
2021-12-28T19:58:19,966   reading manifest file 'pdb2pqr.egg-info/SOURCES.txt'
2021-12-28T19:58:20,007   reading manifest template 'MANIFEST.in'
2021-12-28T19:58:20,667   adding license file 'LICENSE.md'
2021-12-28T19:58:20,667   adding license file 'COPYING'
2021-12-28T19:58:20,691   writing manifest file 'pdb2pqr.egg-info/SOURCES.txt'
2021-12-28T19:58:20,696   Error processing line 1 of /tmp/pip-build-env-qrtq4mzp/overlay/lib/python3.7/site-packages/distutils-precedence.pth:

2021-12-28T19:58:20,697     Traceback (most recent call last):
2021-12-28T19:58:20,697       File "/usr/lib/python3.7/site.py", line 174, in addpackage
2021-12-28T19:58:20,697         exec(line)
2021-12-28T19:58:20,698       File "<string>", line 1, in <module>
2021-12-28T19:58:20,698     AttributeError: module '_distutils_hack' has no attribute 'ensure_shim'

2021-12-28T19:58:20,699   Remainder of file ignored
2021-12-28T19:58:20,797   Getting requirements to build wheel: finished with status 'done'
2021-12-28T19:58:20,814   Created temporary directory: /tmp/pip-modern-metadata-yhtfabsy
2021-12-28T19:58:20,819   Preparing metadata (pyproject.toml): started
2021-12-28T19:58:20,820   Running command /usr/bin/python3 /usr/local/lib/python3.7/dist-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /tmp/tmpwfgc9mif
2021-12-28T19:58:22,472   running dist_info
2021-12-28T19:58:22,502   creating /tmp/pip-modern-metadata-yhtfabsy/pdb2pqr.egg-info
2021-12-28T19:58:22,503   writing /tmp/pip-modern-metadata-yhtfabsy/pdb2pqr.egg-info/PKG-INFO
2021-12-28T19:58:22,507   writing dependency_links to /tmp/pip-modern-metadata-yhtfabsy/pdb2pqr.egg-info/dependency_links.txt
2021-12-28T19:58:22,510   writing entry points to /tmp/pip-modern-metadata-yhtfabsy/pdb2pqr.egg-info/entry_points.txt
2021-12-28T19:58:22,513   writing requirements to /tmp/pip-modern-metadata-yhtfabsy/pdb2pqr.egg-info/requires.txt
2021-12-28T19:58:22,515   writing top-level names to /tmp/pip-modern-metadata-yhtfabsy/pdb2pqr.egg-info/top_level.txt
2021-12-28T19:58:22,518   writing manifest file '/tmp/pip-modern-metadata-yhtfabsy/pdb2pqr.egg-info/SOURCES.txt'
2021-12-28T19:58:22,547   reading manifest file '/tmp/pip-modern-metadata-yhtfabsy/pdb2pqr.egg-info/SOURCES.txt'
2021-12-28T19:58:22,550   reading manifest template 'MANIFEST.in'
2021-12-28T19:58:23,234   adding license file 'LICENSE.md'
2021-12-28T19:58:23,234   adding license file 'COPYING'
2021-12-28T19:58:23,252   writing manifest file '/tmp/pip-modern-metadata-yhtfabsy/pdb2pqr.egg-info/SOURCES.txt'
2021-12-28T19:58:23,254   creating '/tmp/pip-modern-metadata-yhtfabsy/pdb2pqr.dist-info'
2021-12-28T19:58:23,396   adding license file "LICENSE.md" (matched pattern "LICEN[CS]E*")
2021-12-28T19:58:23,396   adding license file "COPYING" (matched pattern "COPYING*")
2021-12-28T19:58:23,409   Error processing line 1 of /tmp/pip-build-env-qrtq4mzp/overlay/lib/python3.7/site-packages/distutils-precedence.pth:

2021-12-28T19:58:23,410     Traceback (most recent call last):
2021-12-28T19:58:23,411       File "/usr/lib/python3.7/site.py", line 174, in addpackage
2021-12-28T19:58:23,411         exec(line)
2021-12-28T19:58:23,411       File "<string>", line 1, in <module>
2021-12-28T19:58:23,412     AttributeError: module '_distutils_hack' has no attribute 'ensure_shim'

2021-12-28T19:58:23,412   Remainder of file ignored
2021-12-28T19:58:23,515   Preparing metadata (pyproject.toml): finished with status 'done'
2021-12-28T19:58:23,527   Source in /tmp/pip-wheel-02l1szng/pdb2pqr_5003d8fa822e48c6aa75d4ffb43e3c26 has version 3.4.1, which satisfies requirement pdb2pqr==3.4.1 from https://files.pythonhosted.org/packages/49/6c/be5f979870cf606a4e3d0827d60fa7f10b98534cd1eca8c24b2fd3856102/pdb2pqr-3.4.1.tar.gz#sha256=9e8cabd984f8e31f010bda0a3e81c87ad93f403d1fd36c787627e5134f7542ba
2021-12-28T19:58:23,529   Removed pdb2pqr==3.4.1 from https://files.pythonhosted.org/packages/49/6c/be5f979870cf606a4e3d0827d60fa7f10b98534cd1eca8c24b2fd3856102/pdb2pqr-3.4.1.tar.gz#sha256=9e8cabd984f8e31f010bda0a3e81c87ad93f403d1fd36c787627e5134f7542ba from build tracker '/tmp/pip-req-tracker-408ci_9y'
2021-12-28T19:58:23,543 Created temporary directory: /tmp/pip-unpack-59cpjz8b
2021-12-28T19:58:23,544 Building wheels for collected packages: pdb2pqr
2021-12-28T19:58:23,552   Created temporary directory: /tmp/pip-wheel-9q980mnl
2021-12-28T19:58:23,552   Destination directory: /tmp/pip-wheel-9q980mnl
2021-12-28T19:58:23,557   Building wheel for pdb2pqr (pyproject.toml): started
2021-12-28T19:58:23,558   Running command /usr/bin/python3 /usr/local/lib/python3.7/dist-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmp2xcvs391
2021-12-28T19:58:25,264   running bdist_wheel
2021-12-28T19:58:25,663   running build
2021-12-28T19:58:25,663   running build_py
2021-12-28T19:58:25,673   creating build
2021-12-28T19:58:25,673   creating build/lib
2021-12-28T19:58:25,675   creating build/lib/pdb2pqr
2021-12-28T19:58:25,677   copying pdb2pqr/__main__.py -> build/lib/pdb2pqr
2021-12-28T19:58:25,681   copying pdb2pqr/structures.py -> build/lib/pdb2pqr
2021-12-28T19:58:25,685   copying pdb2pqr/inputgen.py -> build/lib/pdb2pqr
2021-12-28T19:58:25,690   copying pdb2pqr/run.py -> build/lib/pdb2pqr
2021-12-28T19:58:25,694   copying pdb2pqr/definitions.py -> build/lib/pdb2pqr
2021-12-28T19:58:25,699   copying pdb2pqr/topology.py -> build/lib/pdb2pqr
2021-12-28T19:58:25,703   copying pdb2pqr/utilities.py -> build/lib/pdb2pqr
2021-12-28T19:58:25,707   copying pdb2pqr/forcefield.py -> build/lib/pdb2pqr
2021-12-28T19:58:25,713   copying pdb2pqr/biomolecule.py -> build/lib/pdb2pqr
2021-12-28T19:58:25,719   copying pdb2pqr/pdb.py -> build/lib/pdb2pqr
2021-12-28T19:58:25,729   copying pdb2pqr/quatfit.py -> build/lib/pdb2pqr
2021-12-28T19:58:25,734   copying pdb2pqr/_version.py -> build/lib/pdb2pqr
2021-12-28T19:58:25,736   copying pdb2pqr/aa.py -> build/lib/pdb2pqr
2021-12-28T19:58:25,742   copying pdb2pqr/cells.py -> build/lib/pdb2pqr
2021-12-28T19:58:25,745   copying pdb2pqr/io.py -> build/lib/pdb2pqr
2021-12-28T19:58:25,750   copying pdb2pqr/na.py -> build/lib/pdb2pqr
2021-12-28T19:58:25,754   copying pdb2pqr/psize.py -> build/lib/pdb2pqr
2021-12-28T19:58:25,759   copying pdb2pqr/main.py -> build/lib/pdb2pqr
2021-12-28T19:58:25,764   copying pdb2pqr/__init__.py -> build/lib/pdb2pqr
2021-12-28T19:58:25,767   copying pdb2pqr/cif.py -> build/lib/pdb2pqr
2021-12-28T19:58:25,774   copying pdb2pqr/config.py -> build/lib/pdb2pqr
2021-12-28T19:58:25,777   copying pdb2pqr/residue.py -> build/lib/pdb2pqr
2021-12-28T19:58:25,781   copying pdb2pqr/debump.py -> build/lib/pdb2pqr
2021-12-28T19:58:25,787   creating build/lib/pdb2pqr/hydrogens
2021-12-28T19:58:25,789   copying pdb2pqr/hydrogens/structures.py -> build/lib/pdb2pqr/hydrogens
2021-12-28T19:58:25,796   copying pdb2pqr/hydrogens/__init__.py -> build/lib/pdb2pqr/hydrogens
2021-12-28T19:58:25,802   copying pdb2pqr/hydrogens/optimize.py -> build/lib/pdb2pqr/hydrogens
2021-12-28T19:58:25,808   creating build/lib/pdb2pqr/ligand
2021-12-28T19:58:25,810   copying pdb2pqr/ligand/peoe.py -> build/lib/pdb2pqr/ligand
2021-12-28T19:58:25,814   copying pdb2pqr/ligand/topology.py -> build/lib/pdb2pqr/ligand
2021-12-28T19:58:25,817   copying pdb2pqr/ligand/mol2.py -> build/lib/pdb2pqr/ligand
2021-12-28T19:58:25,822   copying pdb2pqr/ligand/__init__.py -> build/lib/pdb2pqr/ligand
2021-12-28T19:58:25,833   creating build/lib/pdb2pqr/dat
2021-12-28T19:58:25,835   copying pdb2pqr/dat/AA.xml -> build/lib/pdb2pqr/dat
2021-12-28T19:58:25,843   copying pdb2pqr/dat/NA.xml -> build/lib/pdb2pqr/dat
2021-12-28T19:58:25,848   copying pdb2pqr/dat/PATCHES.xml -> build/lib/pdb2pqr/dat
2021-12-28T19:58:25,853   copying pdb2pqr/dat/TOPOLOGY.xml -> build/lib/pdb2pqr/dat
2021-12-28T19:58:25,861   copying pdb2pqr/dat/HYDROGENS.xml -> build/lib/pdb2pqr/dat
2021-12-28T19:58:25,865   copying pdb2pqr/dat/SWANSON.DAT -> build/lib/pdb2pqr/dat
2021-12-28T19:58:25,873   copying pdb2pqr/dat/PEOEPB.DAT -> build/lib/pdb2pqr/dat
2021-12-28T19:58:25,879   copying pdb2pqr/dat/AMBER.DAT -> build/lib/pdb2pqr/dat
2021-12-28T19:58:25,887   copying pdb2pqr/dat/CHARMM.DAT -> build/lib/pdb2pqr/dat
2021-12-28T19:58:25,896   copying pdb2pqr/dat/PARSE.DAT -> build/lib/pdb2pqr/dat
2021-12-28T19:58:25,902   copying pdb2pqr/dat/TYL06.DAT -> build/lib/pdb2pqr/dat
2021-12-28T19:58:25,912   copying pdb2pqr/dat/SWANSON.names -> build/lib/pdb2pqr/dat
2021-12-28T19:58:25,916   copying pdb2pqr/dat/AMBER.names -> build/lib/pdb2pqr/dat
2021-12-28T19:58:25,919   copying pdb2pqr/dat/PEOEPB.names -> build/lib/pdb2pqr/dat
2021-12-28T19:58:25,923   copying pdb2pqr/dat/TYL06.names -> build/lib/pdb2pqr/dat
2021-12-28T19:58:25,926   copying pdb2pqr/dat/CHARMM.names -> build/lib/pdb2pqr/dat
2021-12-28T19:58:25,931   copying pdb2pqr/dat/PARSE.names -> build/lib/pdb2pqr/dat
2021-12-28T19:58:25,950   installing to build/bdist.linux-armv7l/wheel
2021-12-28T19:58:25,950   running install
2021-12-28T19:58:25,953   running install_lib
2021-12-28T19:58:25,961   creating build/bdist.linux-armv7l
2021-12-28T19:58:25,961   creating build/bdist.linux-armv7l/wheel
2021-12-28T19:58:25,965   creating build/bdist.linux-armv7l/wheel/pdb2pqr
2021-12-28T19:58:25,967   creating build/bdist.linux-armv7l/wheel/pdb2pqr/hydrogens
2021-12-28T19:58:25,969   copying build/lib/pdb2pqr/hydrogens/structures.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/hydrogens
2021-12-28T19:58:25,976   copying build/lib/pdb2pqr/hydrogens/__init__.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/hydrogens
2021-12-28T19:58:25,982   copying build/lib/pdb2pqr/hydrogens/optimize.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/hydrogens
2021-12-28T19:58:25,987   copying build/lib/pdb2pqr/__main__.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2021-12-28T19:58:25,990   copying build/lib/pdb2pqr/structures.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2021-12-28T19:58:25,994   copying build/lib/pdb2pqr/inputgen.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2021-12-28T19:58:25,998   copying build/lib/pdb2pqr/run.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2021-12-28T19:58:26,002   copying build/lib/pdb2pqr/definitions.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2021-12-28T19:58:26,006   copying build/lib/pdb2pqr/topology.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2021-12-28T19:58:26,010   copying build/lib/pdb2pqr/utilities.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2021-12-28T19:58:26,014   copying build/lib/pdb2pqr/forcefield.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2021-12-28T19:58:26,020   copying build/lib/pdb2pqr/biomolecule.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2021-12-28T19:58:26,027   copying build/lib/pdb2pqr/pdb.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2021-12-28T19:58:26,037   copying build/lib/pdb2pqr/quatfit.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2021-12-28T19:58:26,041   copying build/lib/pdb2pqr/_version.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2021-12-28T19:58:26,044   copying build/lib/pdb2pqr/aa.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2021-12-28T19:58:26,049   copying build/lib/pdb2pqr/cells.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2021-12-28T19:58:26,054   creating build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2021-12-28T19:58:26,055   copying build/lib/pdb2pqr/dat/SWANSON.DAT -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2021-12-28T19:58:26,061   copying build/lib/pdb2pqr/dat/SWANSON.names -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2021-12-28T19:58:26,064   copying build/lib/pdb2pqr/dat/PEOEPB.DAT -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2021-12-28T19:58:26,069   copying build/lib/pdb2pqr/dat/AA.xml -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2021-12-28T19:58:26,076   copying build/lib/pdb2pqr/dat/AMBER.names -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2021-12-28T19:58:26,079   copying build/lib/pdb2pqr/dat/NA.xml -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2021-12-28T19:58:26,085   copying build/lib/pdb2pqr/dat/PATCHES.xml -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2021-12-28T19:58:26,089   copying build/lib/pdb2pqr/dat/AMBER.DAT -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2021-12-28T19:58:26,096   copying build/lib/pdb2pqr/dat/PEOEPB.names -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2021-12-28T19:58:26,099   copying build/lib/pdb2pqr/dat/TYL06.names -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2021-12-28T19:58:26,102   copying build/lib/pdb2pqr/dat/CHARMM.DAT -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2021-12-28T19:58:26,109   copying build/lib/pdb2pqr/dat/PARSE.DAT -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2021-12-28T19:58:26,114   copying build/lib/pdb2pqr/dat/TOPOLOGY.xml -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2021-12-28T19:58:26,122   copying build/lib/pdb2pqr/dat/HYDROGENS.xml -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2021-12-28T19:58:26,126   copying build/lib/pdb2pqr/dat/CHARMM.names -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2021-12-28T19:58:26,129   copying build/lib/pdb2pqr/dat/PARSE.names -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2021-12-28T19:58:26,133   copying build/lib/pdb2pqr/dat/TYL06.DAT -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2021-12-28T19:58:26,142   copying build/lib/pdb2pqr/io.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2021-12-28T19:58:26,147   copying build/lib/pdb2pqr/na.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2021-12-28T19:58:26,150   copying build/lib/pdb2pqr/psize.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2021-12-28T19:58:26,156   creating build/bdist.linux-armv7l/wheel/pdb2pqr/ligand
2021-12-28T19:58:26,157   copying build/lib/pdb2pqr/ligand/peoe.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/ligand
2021-12-28T19:58:26,161   copying build/lib/pdb2pqr/ligand/topology.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/ligand
2021-12-28T19:58:26,164   copying build/lib/pdb2pqr/ligand/mol2.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/ligand
2021-12-28T19:58:26,168   copying build/lib/pdb2pqr/ligand/__init__.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/ligand
2021-12-28T19:58:26,172   copying build/lib/pdb2pqr/main.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2021-12-28T19:58:26,177   copying build/lib/pdb2pqr/__init__.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2021-12-28T19:58:26,180   copying build/lib/pdb2pqr/cif.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2021-12-28T19:58:26,185   copying build/lib/pdb2pqr/config.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2021-12-28T19:58:26,188   copying build/lib/pdb2pqr/residue.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2021-12-28T19:58:26,192   copying build/lib/pdb2pqr/debump.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2021-12-28T19:58:26,196   running install_egg_info
2021-12-28T19:58:26,233   running egg_info
2021-12-28T19:58:26,233   writing pdb2pqr.egg-info/PKG-INFO
2021-12-28T19:58:26,236   writing dependency_links to pdb2pqr.egg-info/dependency_links.txt
2021-12-28T19:58:26,238   writing entry points to pdb2pqr.egg-info/entry_points.txt
2021-12-28T19:58:26,240   writing requirements to pdb2pqr.egg-info/requires.txt
2021-12-28T19:58:26,242   writing top-level names to pdb2pqr.egg-info/top_level.txt
2021-12-28T19:58:26,260   reading manifest file 'pdb2pqr.egg-info/SOURCES.txt'
2021-12-28T19:58:26,272   reading manifest template 'MANIFEST.in'
2021-12-28T19:58:26,911   adding license file 'LICENSE.md'
2021-12-28T19:58:26,911   adding license file 'COPYING'
2021-12-28T19:58:26,935   writing manifest file 'pdb2pqr.egg-info/SOURCES.txt'
2021-12-28T19:58:26,939   Copying pdb2pqr.egg-info to build/bdist.linux-armv7l/wheel/pdb2pqr-3.4.1-py3.7.egg-info
2021-12-28T19:58:26,962   running install_scripts
2021-12-28T19:58:27,150   adding license file "LICENSE.md" (matched pattern "LICEN[CS]E*")
2021-12-28T19:58:27,150   adding license file "COPYING" (matched pattern "COPYING*")
2021-12-28T19:58:27,160   creating build/bdist.linux-armv7l/wheel/pdb2pqr-3.4.1.dist-info/WHEEL
2021-12-28T19:58:27,165   creating '/tmp/pip-wheel-9q980mnl/tmp8ed6dmd0/pdb2pqr-3.4.1-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-12-28T19:58:27,170   adding 'pdb2pqr/__init__.py'
2021-12-28T19:58:27,172   adding 'pdb2pqr/__main__.py'
2021-12-28T19:58:27,174   adding 'pdb2pqr/_version.py'
2021-12-28T19:58:27,180   adding 'pdb2pqr/aa.py'
2021-12-28T19:58:27,192   adding 'pdb2pqr/biomolecule.py'
2021-12-28T19:58:27,195   adding 'pdb2pqr/cells.py'
2021-12-28T19:58:27,203   adding 'pdb2pqr/cif.py'
2021-12-28T19:58:27,206   adding 'pdb2pqr/config.py'
2021-12-28T19:58:27,211   adding 'pdb2pqr/debump.py'
2021-12-28T19:58:27,215   adding 'pdb2pqr/definitions.py'
2021-12-28T19:58:27,223   adding 'pdb2pqr/forcefield.py'
2021-12-28T19:58:27,227   adding 'pdb2pqr/inputgen.py'
2021-12-28T19:58:27,233   adding 'pdb2pqr/io.py'
2021-12-28T19:58:27,242   adding 'pdb2pqr/main.py'
2021-12-28T19:58:27,245   adding 'pdb2pqr/na.py'
2021-12-28T19:58:27,265   adding 'pdb2pqr/pdb.py'
2021-12-28T19:58:27,272   adding 'pdb2pqr/psize.py'
2021-12-28T19:58:27,277   adding 'pdb2pqr/quatfit.py'
2021-12-28T19:58:27,281   adding 'pdb2pqr/residue.py'
2021-12-28T19:58:27,284   adding 'pdb2pqr/run.py'
2021-12-28T19:58:27,287   adding 'pdb2pqr/structures.py'
2021-12-28T19:58:27,291   adding 'pdb2pqr/topology.py'
2021-12-28T19:58:27,295   adding 'pdb2pqr/utilities.py'
2021-12-28T19:58:27,304   adding 'pdb2pqr/dat/AA.xml'
2021-12-28T19:58:27,323   adding 'pdb2pqr/dat/AMBER.DAT'
2021-12-28T19:58:27,326   adding 'pdb2pqr/dat/AMBER.names'
2021-12-28T19:58:27,342   adding 'pdb2pqr/dat/CHARMM.DAT'
2021-12-28T19:58:27,346   adding 'pdb2pqr/dat/CHARMM.names'
2021-12-28T19:58:27,348   adding 'pdb2pqr/dat/HYDROGENS.xml'
2021-12-28T19:58:27,354   adding 'pdb2pqr/dat/NA.xml'
2021-12-28T19:58:27,360   adding 'pdb2pqr/dat/PARSE.DAT'
2021-12-28T19:58:27,363   adding 'pdb2pqr/dat/PARSE.names'
2021-12-28T19:58:27,366   adding 'pdb2pqr/dat/PATCHES.xml'
2021-12-28T19:58:27,378   adding 'pdb2pqr/dat/PEOEPB.DAT'
2021-12-28T19:58:27,381   adding 'pdb2pqr/dat/PEOEPB.names'
2021-12-28T19:58:27,393   adding 'pdb2pqr/dat/SWANSON.DAT'
2021-12-28T19:58:27,396   adding 'pdb2pqr/dat/SWANSON.names'
2021-12-28T19:58:27,405   adding 'pdb2pqr/dat/TOPOLOGY.xml'
2021-12-28T19:58:27,427   adding 'pdb2pqr/dat/TYL06.DAT'
2021-12-28T19:58:27,431   adding 'pdb2pqr/dat/TYL06.names'
2021-12-28T19:58:27,440   adding 'pdb2pqr/hydrogens/__init__.py'
2021-12-28T19:58:27,446   adding 'pdb2pqr/hydrogens/optimize.py'
2021-12-28T19:58:27,458   adding 'pdb2pqr/hydrogens/structures.py'
2021-12-28T19:58:27,463   adding 'pdb2pqr/ligand/__init__.py'
2021-12-28T19:58:27,469   adding 'pdb2pqr/ligand/mol2.py'
2021-12-28T19:58:27,472   adding 'pdb2pqr/ligand/peoe.py'
2021-12-28T19:58:27,474   adding 'pdb2pqr/ligand/topology.py'
2021-12-28T19:58:27,479   adding 'pdb2pqr-3.4.1.dist-info/COPYING'
2021-12-28T19:58:27,481   adding 'pdb2pqr-3.4.1.dist-info/LICENSE.md'
2021-12-28T19:58:27,483   adding 'pdb2pqr-3.4.1.dist-info/METADATA'
2021-12-28T19:58:27,485   adding 'pdb2pqr-3.4.1.dist-info/WHEEL'
2021-12-28T19:58:27,486   adding 'pdb2pqr-3.4.1.dist-info/entry_points.txt'
2021-12-28T19:58:27,488   adding 'pdb2pqr-3.4.1.dist-info/top_level.txt'
2021-12-28T19:58:27,490   adding 'pdb2pqr-3.4.1.dist-info/RECORD'
2021-12-28T19:58:27,503   removing build/bdist.linux-armv7l/wheel
2021-12-28T19:58:27,535   Error processing line 1 of /tmp/pip-build-env-qrtq4mzp/overlay/lib/python3.7/site-packages/distutils-precedence.pth:

2021-12-28T19:58:27,536     Traceback (most recent call last):
2021-12-28T19:58:27,536       File "/usr/lib/python3.7/site.py", line 174, in addpackage
2021-12-28T19:58:27,536         exec(line)
2021-12-28T19:58:27,537       File "<string>", line 1, in <module>
2021-12-28T19:58:27,537     AttributeError: module '_distutils_hack' has no attribute 'ensure_shim'

2021-12-28T19:58:27,538   Remainder of file ignored
2021-12-28T19:58:27,673   Building wheel for pdb2pqr (pyproject.toml): finished with status 'done'
2021-12-28T19:58:27,697   Created wheel for pdb2pqr: filename=pdb2pqr-3.4.1-py2.py3-none-any.whl size=207383 sha256=4e8973c4ca7695b4c84ac65a4a21fb289edf192c67fbdfd2ed90cc41df799b12
2021-12-28T19:58:27,698   Stored in directory: /tmp/pip-ephem-wheel-cache-kn4_ydww/wheels/bc/10/0e/1a101014da628da2c0cce33a96533ff015ac7fa9e3fe7db47d
2021-12-28T19:58:27,724 Successfully built pdb2pqr
2021-12-28T19:58:27,753 Removed build tracker: '/tmp/pip-req-tracker-408ci_9y'