2021-12-30T03:47:03,082 Created temporary directory: /tmp/pip-ephem-wheel-cache-q9u0qwjw
2021-12-30T03:47:03,088 Created temporary directory: /tmp/pip-req-tracker-x7ri5skn
2021-12-30T03:47:03,089 Initialized build tracking at /tmp/pip-req-tracker-x7ri5skn
2021-12-30T03:47:03,089 Created build tracker: /tmp/pip-req-tracker-x7ri5skn
2021-12-30T03:47:03,090 Entered build tracker: /tmp/pip-req-tracker-x7ri5skn
2021-12-30T03:47:03,091 Created temporary directory: /tmp/pip-wheel-fnic3l97
2021-12-30T03:47:03,151 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-12-30T03:47:03,155 2 location(s) to search for versions of adsorber:
2021-12-30T03:47:03,155 * https://pypi.org/simple/adsorber/
2021-12-30T03:47:03,155 * https://www.piwheels.org/simple/adsorber/
2021-12-30T03:47:03,156 Fetching project page and analyzing links: https://pypi.org/simple/adsorber/
2021-12-30T03:47:03,158 Getting page https://pypi.org/simple/adsorber/
2021-12-30T03:47:03,162 Found index url https://pypi.org/simple
2021-12-30T03:47:03,526   Skipping link: No binaries permitted for adsorber: https://files.pythonhosted.org/packages/67/45/764673e4ab9dd73c26a82036860a3f290a0f38a18c3628679d2244a0d0b3/Adsorber-1.1-py3-none-any.whl#sha256=c406fe82db426ffe8c693edb0f329dfd21b737b2cec48c663589cf8d932e8131 (from https://pypi.org/simple/adsorber/)
2021-12-30T03:47:03,527   Found link https://files.pythonhosted.org/packages/3f/d1/eeb332b1ee5a63f21859bfe01ce56c7cd9de2d36b807499405f1da661bb0/Adsorber-1.1.tar.gz#sha256=e5e233c6adf78c303a7a20a1d051c0e7d19508973d95df220664a93903b20538 (from https://pypi.org/simple/adsorber/), version: 1.1
2021-12-30T03:47:03,527   Skipping link: No binaries permitted for adsorber: https://files.pythonhosted.org/packages/78/e1/dae6cb06da46971611850b7e7d163591a9092d2bb30e881e9eca16e1c0fd/Adsorber-1.10-py3-none-any.whl#sha256=9fd1906ae33ee237e19692d47a85c01671435c36fa73cb94b979d826ec32a819 (from https://pypi.org/simple/adsorber/)
2021-12-30T03:47:03,528   Found link https://files.pythonhosted.org/packages/7f/e6/79ce16f1dbc6439e2c53b136dda17741764d2154566e171588f11a3c71a9/Adsorber-1.10.tar.gz#sha256=a9cdff93cdafa436b1a0f5c145c6c74ce2d13c14abd23c06bda45bd3dc8e44a9 (from https://pypi.org/simple/adsorber/), version: 1.10
2021-12-30T03:47:03,529 Fetching project page and analyzing links: https://www.piwheels.org/simple/adsorber/
2021-12-30T03:47:03,529 Getting page https://www.piwheels.org/simple/adsorber/
2021-12-30T03:47:03,532 Found index url https://www.piwheels.org/simple
2021-12-30T03:47:03,764   Skipping link: No binaries permitted for adsorber: https://www.piwheels.org/simple/adsorber/Adsorber-1.1-py3-none-any.whl#sha256=c406fe82db426ffe8c693edb0f329dfd21b737b2cec48c663589cf8d932e8131 (from https://www.piwheels.org/simple/adsorber/)
2021-12-30T03:47:03,793 Given no hashes to check 1 links for project 'adsorber': discarding no candidates
2021-12-30T03:47:03,825 Collecting adsorber==1.10
2021-12-30T03:47:03,828   Created temporary directory: /tmp/pip-unpack-rjja83s8
2021-12-30T03:47:04,046   Downloading Adsorber-1.10.tar.gz (56 kB)
2021-12-30T03:47:04,334   Added adsorber==1.10 from https://files.pythonhosted.org/packages/7f/e6/79ce16f1dbc6439e2c53b136dda17741764d2154566e171588f11a3c71a9/Adsorber-1.10.tar.gz#sha256=a9cdff93cdafa436b1a0f5c145c6c74ce2d13c14abd23c06bda45bd3dc8e44a9 to build tracker '/tmp/pip-req-tracker-x7ri5skn'
2021-12-30T03:47:04,336     Running setup.py (path:/tmp/pip-wheel-fnic3l97/adsorber_efefecda4f0f4f51964a5a4be89afc9d/setup.py) egg_info for package adsorber
2021-12-30T03:47:04,339     Created temporary directory: /tmp/pip-pip-egg-info-5psjni19
2021-12-30T03:47:04,340     Running command python setup.py egg_info
2021-12-30T03:47:06,921     running egg_info
2021-12-30T03:47:06,927     creating /tmp/pip-pip-egg-info-5psjni19/Adsorber.egg-info
2021-12-30T03:47:06,932     writing /tmp/pip-pip-egg-info-5psjni19/Adsorber.egg-info/PKG-INFO
2021-12-30T03:47:06,939     writing top-level names to /tmp/pip-pip-egg-info-5psjni19/Adsorber.egg-info/top_level.txt
2021-12-30T03:47:06,942     writing dependency_links to /tmp/pip-pip-egg-info-5psjni19/Adsorber.egg-info/dependency_links.txt
2021-12-30T03:47:06,944     writing requirements to /tmp/pip-pip-egg-info-5psjni19/Adsorber.egg-info/requires.txt
2021-12-30T03:47:06,951     writing manifest file '/tmp/pip-pip-egg-info-5psjni19/Adsorber.egg-info/SOURCES.txt'
2021-12-30T03:47:07,308     package init file 'Adsorber/Adsorber/__init__.py' not found (or not a regular file)
2021-12-30T03:47:07,310     package init file 'Adsorber/Subsidiary_Programs/__init__.py' not found (or not a regular file)
2021-12-30T03:47:07,313     package init file 'Adsorber/Subsidiary_Programs/prepare_jobs_scripts/__init__.py' not found (or not a regular file)
2021-12-30T03:47:07,318     reading manifest file '/tmp/pip-pip-egg-info-5psjni19/Adsorber.egg-info/SOURCES.txt'
2021-12-30T03:47:07,328     writing manifest file '/tmp/pip-pip-egg-info-5psjni19/Adsorber.egg-info/SOURCES.txt'
2021-12-30T03:47:07,462   Source in /tmp/pip-wheel-fnic3l97/adsorber_efefecda4f0f4f51964a5a4be89afc9d has version 1.10, which satisfies requirement adsorber==1.10 from https://files.pythonhosted.org/packages/7f/e6/79ce16f1dbc6439e2c53b136dda17741764d2154566e171588f11a3c71a9/Adsorber-1.10.tar.gz#sha256=a9cdff93cdafa436b1a0f5c145c6c74ce2d13c14abd23c06bda45bd3dc8e44a9
2021-12-30T03:47:07,464   Removed adsorber==1.10 from https://files.pythonhosted.org/packages/7f/e6/79ce16f1dbc6439e2c53b136dda17741764d2154566e171588f11a3c71a9/Adsorber-1.10.tar.gz#sha256=a9cdff93cdafa436b1a0f5c145c6c74ce2d13c14abd23c06bda45bd3dc8e44a9 from build tracker '/tmp/pip-req-tracker-x7ri5skn'
2021-12-30T03:47:07,474 Created temporary directory: /tmp/pip-unpack-zhaio3f1
2021-12-30T03:47:07,475 Building wheels for collected packages: adsorber
2021-12-30T03:47:07,483   Created temporary directory: /tmp/pip-wheel-a7dhbis9
2021-12-30T03:47:07,484   Building wheel for adsorber (setup.py): started
2021-12-30T03:47:07,485   Destination directory: /tmp/pip-wheel-a7dhbis9
2021-12-30T03:47:07,485   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-fnic3l97/adsorber_efefecda4f0f4f51964a5a4be89afc9d/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-fnic3l97/adsorber_efefecda4f0f4f51964a5a4be89afc9d/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-a7dhbis9
2021-12-30T03:47:09,808   running bdist_wheel
2021-12-30T03:47:09,824   running build
2021-12-30T03:47:09,825   running build_py
2021-12-30T03:47:10,168   creating build
2021-12-30T03:47:10,169   creating build/lib
2021-12-30T03:47:10,170   creating build/lib/Adsorber
2021-12-30T03:47:10,173   copying Adsorber/__init__.py -> build/lib/Adsorber
2021-12-30T03:47:10,177   package init file 'Adsorber/Adsorber/__init__.py' not found (or not a regular file)
2021-12-30T03:47:10,180   creating build/lib/Adsorber/Adsorber
2021-12-30T03:47:10,182   copying Adsorber/Adsorber/repulsive_LJ_Calculator.py -> build/lib/Adsorber/Adsorber
2021-12-30T03:47:10,188   copying Adsorber/Adsorber/coulomb_potential.py -> build/lib/Adsorber/Adsorber
2021-12-30T03:47:10,192   copying Adsorber/Adsorber/Part_B_storage_file.py -> build/lib/Adsorber/Adsorber
2021-12-30T03:47:10,197   copying Adsorber/Adsorber/import_settings_into_adsorber.py -> build/lib/Adsorber/Adsorber
2021-12-30T03:47:10,203   copying Adsorber/Adsorber/Part_B_automated_rotation_methods.py -> build/lib/Adsorber/Adsorber
2021-12-30T03:47:10,210   copying Adsorber/Adsorber/Part_C_Create_adsorbed_VASP_Files.py -> build/lib/Adsorber/Adsorber
2021-12-30T03:47:10,216   copying Adsorber/Adsorber/Part_A_Create_non_adsorbed_VASP_files.py -> build/lib/Adsorber/Adsorber
2021-12-30T03:47:10,222   copying Adsorber/Adsorber/Part_B_neighbour_list.py -> build/lib/Adsorber/Adsorber
2021-12-30T03:47:10,226   copying Adsorber/Adsorber/Part_B_get_places_to_bind_to.py -> build/lib/Adsorber/Adsorber
2021-12-30T03:47:10,232   copying Adsorber/Adsorber/Part_B_adsorb_single_species_to_cluster.py -> build/lib/Adsorber/Adsorber
2021-12-30T03:47:10,237   copying Adsorber/Adsorber/other_methods.py -> build/lib/Adsorber/Adsorber
2021-12-30T03:47:10,242   copying Adsorber/Adsorber/Adsorber_Program.py -> build/lib/Adsorber/Adsorber
2021-12-30T03:47:10,248   package init file 'Adsorber/Subsidiary_Programs/__init__.py' not found (or not a regular file)
2021-12-30T03:47:10,253   creating build/lib/Adsorber/Subsidiary_Programs
2021-12-30T03:47:10,256   copying Adsorber/Subsidiary_Programs/adsorbate_atom.py -> build/lib/Adsorber/Subsidiary_Programs
2021-12-30T03:47:10,263   copying Adsorber/Subsidiary_Programs/Run_Adsorber_Part_D_gather_information.py -> build/lib/Adsorber/Subsidiary_Programs
2021-12-30T03:47:10,269   copying Adsorber/Subsidiary_Programs/Run_Adsorber_compare_systems_with_same_binding.py -> build/lib/Adsorber/Subsidiary_Programs
2021-12-30T03:47:10,275   copying Adsorber/Subsidiary_Programs/Run_Adsorber_Tidy_Finished_Jobs.py -> build/lib/Adsorber/Subsidiary_Programs
2021-12-30T03:47:10,279   copying Adsorber/Subsidiary_Programs/Run_Adsorber_prepare_unconverged_VASP_jobs.py -> build/lib/Adsorber/Subsidiary_Programs
2021-12-30T03:47:10,285   copying Adsorber/Subsidiary_Programs/Run_Adsorber_submitSL_slurm.py -> build/lib/Adsorber/Subsidiary_Programs
2021-12-30T03:47:10,290   copying Adsorber/Subsidiary_Programs/Part_D_Methods.py -> build/lib/Adsorber/Subsidiary_Programs
2021-12-30T03:47:10,297   copying Adsorber/Subsidiary_Programs/Run_Adsorber_gather_traj_files.py -> build/lib/Adsorber/Subsidiary_Programs
2021-12-30T03:47:10,302   copying Adsorber/Subsidiary_Programs/Run_Adsorber_only_show_submitSL_slurm.py -> build/lib/Adsorber/Subsidiary_Programs
2021-12-30T03:47:10,306   copying Adsorber/Subsidiary_Programs/Copy_Files_from_Folder_B_to_Folder_C.py -> build/lib/Adsorber/Subsidiary_Programs
2021-12-30T03:47:10,311   copying Adsorber/Subsidiary_Programs/Run_Adsorber_make_vacuum.py -> build/lib/Adsorber/Subsidiary_Programs
2021-12-30T03:47:10,315   copying Adsorber/Subsidiary_Programs/Run_Adsorber_determine_unconverged_VASP_jobs.py -> build/lib/Adsorber/Subsidiary_Programs
2021-12-30T03:47:10,319   package init file 'Adsorber/Subsidiary_Programs/prepare_jobs_scripts/__init__.py' not found (or not a regular file)
2021-12-30T03:47:10,321   creating build/lib/Adsorber/Subsidiary_Programs/prepare_jobs_scripts
2021-12-30T03:47:10,324   copying Adsorber/Subsidiary_Programs/prepare_jobs_scripts/prepare_unconverged_VASP_jobs_from_textfile.py -> build/lib/Adsorber/Subsidiary_Programs/prepare_jobs_scripts
2021-12-30T03:47:10,328   copying Adsorber/Subsidiary_Programs/prepare_jobs_scripts/prepare_unconverged_VASP_jobs_methods.py -> build/lib/Adsorber/Subsidiary_Programs/prepare_jobs_scripts
2021-12-30T03:47:10,333   copying Adsorber/Subsidiary_Programs/prepare_jobs_scripts/prepare_unconverged_VASP_jobs_from_folders.py -> build/lib/Adsorber/Subsidiary_Programs/prepare_jobs_scripts
2021-12-30T03:47:10,351   installing to build/bdist.linux-armv7l/wheel
2021-12-30T03:47:10,351   running install
2021-12-30T03:47:10,353   running install_lib
2021-12-30T03:47:10,362   creating build/bdist.linux-armv7l
2021-12-30T03:47:10,363   creating build/bdist.linux-armv7l/wheel
2021-12-30T03:47:10,366   creating build/bdist.linux-armv7l/wheel/Adsorber
2021-12-30T03:47:10,370   creating build/bdist.linux-armv7l/wheel/Adsorber/Subsidiary_Programs
2021-12-30T03:47:10,374   creating build/bdist.linux-armv7l/wheel/Adsorber/Subsidiary_Programs/prepare_jobs_scripts
2021-12-30T03:47:10,376   copying build/lib/Adsorber/Subsidiary_Programs/prepare_jobs_scripts/prepare_unconverged_VASP_jobs_from_textfile.py -> build/bdist.linux-armv7l/wheel/Adsorber/Subsidiary_Programs/prepare_jobs_scripts
2021-12-30T03:47:10,381   copying build/lib/Adsorber/Subsidiary_Programs/prepare_jobs_scripts/prepare_unconverged_VASP_jobs_methods.py -> build/bdist.linux-armv7l/wheel/Adsorber/Subsidiary_Programs/prepare_jobs_scripts
2021-12-30T03:47:10,385   copying build/lib/Adsorber/Subsidiary_Programs/prepare_jobs_scripts/prepare_unconverged_VASP_jobs_from_folders.py -> build/bdist.linux-armv7l/wheel/Adsorber/Subsidiary_Programs/prepare_jobs_scripts
2021-12-30T03:47:10,391   copying build/lib/Adsorber/Subsidiary_Programs/adsorbate_atom.py -> build/bdist.linux-armv7l/wheel/Adsorber/Subsidiary_Programs
2021-12-30T03:47:10,397   copying build/lib/Adsorber/Subsidiary_Programs/Run_Adsorber_Part_D_gather_information.py -> build/bdist.linux-armv7l/wheel/Adsorber/Subsidiary_Programs
2021-12-30T03:47:10,405   copying build/lib/Adsorber/Subsidiary_Programs/Run_Adsorber_compare_systems_with_same_binding.py -> build/bdist.linux-armv7l/wheel/Adsorber/Subsidiary_Programs
2021-12-30T03:47:10,411   copying build/lib/Adsorber/Subsidiary_Programs/Run_Adsorber_Tidy_Finished_Jobs.py -> build/bdist.linux-armv7l/wheel/Adsorber/Subsidiary_Programs
2021-12-30T03:47:10,415   copying build/lib/Adsorber/Subsidiary_Programs/Run_Adsorber_prepare_unconverged_VASP_jobs.py -> build/bdist.linux-armv7l/wheel/Adsorber/Subsidiary_Programs
2021-12-30T03:47:10,420   copying build/lib/Adsorber/Subsidiary_Programs/Run_Adsorber_submitSL_slurm.py -> build/bdist.linux-armv7l/wheel/Adsorber/Subsidiary_Programs
2021-12-30T03:47:10,426   copying build/lib/Adsorber/Subsidiary_Programs/Part_D_Methods.py -> build/bdist.linux-armv7l/wheel/Adsorber/Subsidiary_Programs
2021-12-30T03:47:10,434   copying build/lib/Adsorber/Subsidiary_Programs/Run_Adsorber_gather_traj_files.py -> build/bdist.linux-armv7l/wheel/Adsorber/Subsidiary_Programs
2021-12-30T03:47:10,440   copying build/lib/Adsorber/Subsidiary_Programs/Run_Adsorber_only_show_submitSL_slurm.py -> build/bdist.linux-armv7l/wheel/Adsorber/Subsidiary_Programs
2021-12-30T03:47:10,447   copying build/lib/Adsorber/Subsidiary_Programs/Copy_Files_from_Folder_B_to_Folder_C.py -> build/bdist.linux-armv7l/wheel/Adsorber/Subsidiary_Programs
2021-12-30T03:47:10,453   copying build/lib/Adsorber/Subsidiary_Programs/Run_Adsorber_make_vacuum.py -> build/bdist.linux-armv7l/wheel/Adsorber/Subsidiary_Programs
2021-12-30T03:47:10,458   copying build/lib/Adsorber/Subsidiary_Programs/Run_Adsorber_determine_unconverged_VASP_jobs.py -> build/bdist.linux-armv7l/wheel/Adsorber/Subsidiary_Programs
2021-12-30T03:47:10,463   copying build/lib/Adsorber/__init__.py -> build/bdist.linux-armv7l/wheel/Adsorber
2021-12-30T03:47:10,471   creating build/bdist.linux-armv7l/wheel/Adsorber/Adsorber
2021-12-30T03:47:10,474   copying build/lib/Adsorber/Adsorber/repulsive_LJ_Calculator.py -> build/bdist.linux-armv7l/wheel/Adsorber/Adsorber
2021-12-30T03:47:10,481   copying build/lib/Adsorber/Adsorber/coulomb_potential.py -> build/bdist.linux-armv7l/wheel/Adsorber/Adsorber
2021-12-30T03:47:10,488   copying build/lib/Adsorber/Adsorber/Part_B_storage_file.py -> build/bdist.linux-armv7l/wheel/Adsorber/Adsorber
2021-12-30T03:47:10,493   copying build/lib/Adsorber/Adsorber/import_settings_into_adsorber.py -> build/bdist.linux-armv7l/wheel/Adsorber/Adsorber
2021-12-30T03:47:10,500   copying build/lib/Adsorber/Adsorber/Part_B_automated_rotation_methods.py -> build/bdist.linux-armv7l/wheel/Adsorber/Adsorber
2021-12-30T03:47:10,507   copying build/lib/Adsorber/Adsorber/Part_C_Create_adsorbed_VASP_Files.py -> build/bdist.linux-armv7l/wheel/Adsorber/Adsorber
2021-12-30T03:47:10,513   copying build/lib/Adsorber/Adsorber/Part_A_Create_non_adsorbed_VASP_files.py -> build/bdist.linux-armv7l/wheel/Adsorber/Adsorber
2021-12-30T03:47:10,517   copying build/lib/Adsorber/Adsorber/Part_B_neighbour_list.py -> build/bdist.linux-armv7l/wheel/Adsorber/Adsorber
2021-12-30T03:47:10,521   copying build/lib/Adsorber/Adsorber/Part_B_get_places_to_bind_to.py -> build/bdist.linux-armv7l/wheel/Adsorber/Adsorber
2021-12-30T03:47:10,526   copying build/lib/Adsorber/Adsorber/Part_B_adsorb_single_species_to_cluster.py -> build/bdist.linux-armv7l/wheel/Adsorber/Adsorber
2021-12-30T03:47:10,533   copying build/lib/Adsorber/Adsorber/other_methods.py -> build/bdist.linux-armv7l/wheel/Adsorber/Adsorber
2021-12-30T03:47:10,538   copying build/lib/Adsorber/Adsorber/Adsorber_Program.py -> build/bdist.linux-armv7l/wheel/Adsorber/Adsorber
2021-12-30T03:47:10,545   running install_egg_info
2021-12-30T03:47:10,590   running egg_info
2021-12-30T03:47:10,592   writing Adsorber.egg-info/PKG-INFO
2021-12-30T03:47:10,597   writing top-level names to Adsorber.egg-info/top_level.txt
2021-12-30T03:47:10,600   writing dependency_links to Adsorber.egg-info/dependency_links.txt
2021-12-30T03:47:10,602   writing requirements to Adsorber.egg-info/requires.txt
2021-12-30T03:47:10,617   reading manifest file 'Adsorber.egg-info/SOURCES.txt'
2021-12-30T03:47:10,631   writing manifest file 'Adsorber.egg-info/SOURCES.txt'
2021-12-30T03:47:10,634   Copying Adsorber.egg-info to build/bdist.linux-armv7l/wheel/Adsorber-1.10-py3.5.egg-info
2021-12-30T03:47:10,666   running install_scripts
2021-12-30T03:47:10,888   creating build/bdist.linux-armv7l/wheel/Adsorber-1.10.dist-info/WHEEL
2021-12-30T03:47:11,229   Building wheel for adsorber (setup.py): finished with status 'done'
2021-12-30T03:47:11,234   Created wheel for adsorber: filename=Adsorber-1.10-py3-none-any.whl size=58487 sha256=c453f8bc6a9b51d55a0cd1a3418fcc343fb020b91d8297dd6470337d809e7b40
2021-12-30T03:47:11,235   Stored in directory: /tmp/pip-ephem-wheel-cache-q9u0qwjw/wheels/c4/ac/fd/cd0efce5feabcc1f0df0a289adfe3595b9addeeaf08706fe74
2021-12-30T03:47:11,256 Successfully built adsorber
2021-12-30T03:47:11,271 Removed build tracker: '/tmp/pip-req-tracker-x7ri5skn'