2021-12-30T16:20:01,260 Created temporary directory: /tmp/pip-ephem-wheel-cache-ifmianra
2021-12-30T16:20:01,266 Created temporary directory: /tmp/pip-req-tracker-3n_7kzl8
2021-12-30T16:20:01,266 Initialized build tracking at /tmp/pip-req-tracker-3n_7kzl8
2021-12-30T16:20:01,267 Created build tracker: /tmp/pip-req-tracker-3n_7kzl8
2021-12-30T16:20:01,267 Entered build tracker: /tmp/pip-req-tracker-3n_7kzl8
2021-12-30T16:20:01,268 Created temporary directory: /tmp/pip-wheel-6x6c6ynj
2021-12-30T16:20:01,337 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-12-30T16:20:01,342 2 location(s) to search for versions of phasefilter:
2021-12-30T16:20:01,342 * https://pypi.org/simple/phasefilter/
2021-12-30T16:20:01,342 * https://www.piwheels.org/simple/phasefilter/
2021-12-30T16:20:01,343 Fetching project page and analyzing links: https://pypi.org/simple/phasefilter/
2021-12-30T16:20:01,344 Getting page https://pypi.org/simple/phasefilter/
2021-12-30T16:20:01,348 Found index url https://pypi.org/simple
2021-12-30T16:20:01,564   Skipping link: No binaries permitted for phasefilter: https://files.pythonhosted.org/packages/70/5b/a12acb782bfb5510c9281ffac13440c2089c4de283d92773f87408ebe857/PHASEfilter-0.0.1a1-py3-none-any.whl#sha256=f5d05fcef0bebaebddc8b37dd6c1a85ce75fac6cee2a44c1cff7c46aca20d121 (from https://pypi.org/simple/phasefilter/) (requires-python:>=3.5)
2021-12-30T16:20:01,566   Found link https://files.pythonhosted.org/packages/59/cb/fd5b96878a1f815759667d3556a4c72151d4f2bed79879dd817a0602c62f/PHASEfilter-0.0.1a1.tar.gz#sha256=ef3277b4002541318cf08e41a549bb5dd56a69418953dcb6f3f2276b14156735 (from https://pypi.org/simple/phasefilter/) (requires-python:>=3.5), version: 0.0.1a1
2021-12-30T16:20:01,567   Skipping link: No binaries permitted for phasefilter: https://files.pythonhosted.org/packages/50/c6/3d3933d1c8f89a5ee4ec5e9a954a42ddd2f616015b4e9de18132bccfc321/PHASEfilter-0.3.2-py3-none-any.whl#sha256=9d5cc14813af003c8660f3cb5874b081b94bdbbf09d1464c5dd12b6c9526d3c6 (from https://pypi.org/simple/phasefilter/) (requires-python:>=3.5)
2021-12-30T16:20:01,568   Found link https://files.pythonhosted.org/packages/41/62/26390ce2c8f9d3fe2739a79da1f0705fd646df1b32200df2697bba0852f2/PHASEfilter-0.3.2.tar.gz#sha256=95374b7d27212f89165da946b659325b446db282fe1e4244915394a9f676f2d6 (from https://pypi.org/simple/phasefilter/) (requires-python:>=3.5), version: 0.3.2
2021-12-30T16:20:01,569   Skipping link: No binaries permitted for phasefilter: https://files.pythonhosted.org/packages/4b/df/18736673d0a18ec858646025792d9808b1a6fedde5cbdf9609187e4f7d6f/PHASEfilter-0.3.3-py3-none-any.whl#sha256=f5b3cf53debb91e2600106a4b3a64e6dc242ef94d10d40db417e90a7a16d75d0 (from https://pypi.org/simple/phasefilter/) (requires-python:>=3.5)
2021-12-30T16:20:01,571   Found link https://files.pythonhosted.org/packages/06/1b/6b3db72941b86ea609af642664e09e6fb15afbaa742c367815e5b30e9f43/PHASEfilter-0.3.3.tar.gz#sha256=0e075565814be73bd03e6b799fba3352d21b62b358c2eb3f9a1c6e694782aa5f (from https://pypi.org/simple/phasefilter/) (requires-python:>=3.5), version: 0.3.3
2021-12-30T16:20:01,571   Skipping link: No binaries permitted for phasefilter: https://files.pythonhosted.org/packages/2f/ec/44fde574b28162fe0a07742b785fe0a1bb8218719858f62e0117ee7f6e78/PHASEfilter-0.3.4-py3-none-any.whl#sha256=298e024c74e35d6226e256a1249aa243c74291d38a08087e63342059d058c768 (from https://pypi.org/simple/phasefilter/) (requires-python:>=3.5)
2021-12-30T16:20:01,573   Found link https://files.pythonhosted.org/packages/d5/4b/6b7afc0d15ec9e7763d7cb1c1d1969f717c7a181d6db6e6fa4e3c16786bf/PHASEfilter-0.3.4.tar.gz#sha256=d4801e6c7671b772453d0f3c2593140b86c610643f759a6f3449e4b933103961 (from https://pypi.org/simple/phasefilter/) (requires-python:>=3.5), version: 0.3.4
2021-12-30T16:20:01,573   Skipping link: No binaries permitted for phasefilter: https://files.pythonhosted.org/packages/7c/69/702e45c82eb74d8b26493ad9f88fd152c36aab9580f88da7006a6024bd18/PHASEfilter-0.3.5-py3-none-any.whl#sha256=bfbd69f07cc71d24533d499ac617424e1ae06c047550793e20ec5e84cf5825e8 (from https://pypi.org/simple/phasefilter/) (requires-python:>=3.5)
2021-12-30T16:20:01,574   Found link https://files.pythonhosted.org/packages/80/3e/40e84d7d008a4866be91ad4e64b7c659ce0bfc80fec720119a0f380d55a5/PHASEfilter-0.3.5.tar.gz#sha256=0476ef19e9e932b0741d97560245b02e591eb9fb59ebccdcc02e9847535d98de (from https://pypi.org/simple/phasefilter/) (requires-python:>=3.5), version: 0.3.5
2021-12-30T16:20:01,575   Skipping link: No binaries permitted for phasefilter: https://files.pythonhosted.org/packages/81/c8/4aadad0ed90553c940306b7f001b34bb4d5e9cd2a1cebece86d73ab6ef0f/PHASEfilter-0.3.6-py3-none-any.whl#sha256=0fef7e8e2a0ad69f3a96aa4c4b1685cd397fae2b5a4808a1f71b0e29cc29956d (from https://pypi.org/simple/phasefilter/) (requires-python:>=3.5)
2021-12-30T16:20:01,576   Found link https://files.pythonhosted.org/packages/7f/5b/e32eac2e68f14e5e748667c531bba0160af86aa2ec5e30f748678d8722df/PHASEfilter-0.3.6.tar.gz#sha256=c6c14c7b8e5483a7401dc5433601c83750dfcc4e3452eec937cb342a880dfa66 (from https://pypi.org/simple/phasefilter/) (requires-python:>=3.5), version: 0.3.6
2021-12-30T16:20:01,577 Fetching project page and analyzing links: https://www.piwheels.org/simple/phasefilter/
2021-12-30T16:20:01,578 Getting page https://www.piwheels.org/simple/phasefilter/
2021-12-30T16:20:01,580 Found index url https://www.piwheels.org/simple
2021-12-30T16:20:01,881   Skipping link: No binaries permitted for phasefilter: https://www.piwheels.org/simple/phasefilter/PHASEfilter-0.0.1a1-py3-none-any.whl#sha256=f5d05fcef0bebaebddc8b37dd6c1a85ce75fac6cee2a44c1cff7c46aca20d121 (from https://www.piwheels.org/simple/phasefilter/) (requires-python:>=3.5)
2021-12-30T16:20:01,882   Skipping link: No binaries permitted for phasefilter: https://www.piwheels.org/simple/phasefilter/PHASEfilter-0.3.2-py3-none-any.whl#sha256=faf7a59bd43b3d436e6eeb9d9e1205e95908bb5ca75eac67452cddcc557915b4 (from https://www.piwheels.org/simple/phasefilter/) (requires-python:>=3.5)
2021-12-30T16:20:01,883   Skipping link: No binaries permitted for phasefilter: https://www.piwheels.org/simple/phasefilter/PHASEfilter-0.3.3-py3-none-any.whl#sha256=f201c1bb78408dc19e9a8864e46fcf91bf051ecacc8672f1878dab375ca1b676 (from https://www.piwheels.org/simple/phasefilter/) (requires-python:>=3.5)
2021-12-30T16:20:01,883   Skipping link: No binaries permitted for phasefilter: https://www.piwheels.org/simple/phasefilter/PHASEfilter-0.3.4-py3-none-any.whl#sha256=56a9dea2ecab01677b300d8e01d3f79c867521c0cf4e0d11bb3571ebd49ca11c (from https://www.piwheels.org/simple/phasefilter/) (requires-python:>=3.5)
2021-12-30T16:20:01,883   Skipping link: No binaries permitted for phasefilter: https://www.piwheels.org/simple/phasefilter/PHASEfilter-0.3.5-py3-none-any.whl#sha256=50bd2b14fbcf7b4cb03a16b7f74d54beaefebe9c588361186ad7d712b61982da (from https://www.piwheels.org/simple/phasefilter/) (requires-python:>=3.5)
2021-12-30T16:20:01,884 Skipping link: not a file: https://www.piwheels.org/simple/phasefilter/
2021-12-30T16:20:01,884 Skipping link: not a file: https://pypi.org/simple/phasefilter/
2021-12-30T16:20:01,918 Given no hashes to check 1 links for project 'phasefilter': discarding no candidates
2021-12-30T16:20:01,947 Collecting phasefilter==0.3.6
2021-12-30T16:20:01,950   Created temporary directory: /tmp/pip-unpack-h272e0ch
2021-12-30T16:20:02,039   Downloading PHASEfilter-0.3.6.tar.gz (53 kB)
2021-12-30T16:20:02,248   Added phasefilter==0.3.6 from https://files.pythonhosted.org/packages/7f/5b/e32eac2e68f14e5e748667c531bba0160af86aa2ec5e30f748678d8722df/PHASEfilter-0.3.6.tar.gz#sha256=c6c14c7b8e5483a7401dc5433601c83750dfcc4e3452eec937cb342a880dfa66 to build tracker '/tmp/pip-req-tracker-3n_7kzl8'
2021-12-30T16:20:02,250   Running setup.py (path:/tmp/pip-wheel-6x6c6ynj/phasefilter_ab323d24fa684efa80b5560db566316c/setup.py) egg_info for package phasefilter
2021-12-30T16:20:02,251   Created temporary directory: /tmp/pip-pip-egg-info-pv4ygq8o
2021-12-30T16:20:02,251   Preparing metadata (setup.py): started
2021-12-30T16:20:02,252   Running command python setup.py egg_info
2021-12-30T16:20:04,518   running egg_info
2021-12-30T16:20:04,522   creating /tmp/pip-pip-egg-info-pv4ygq8o/PHASEfilter.egg-info
2021-12-30T16:20:04,524   writing /tmp/pip-pip-egg-info-pv4ygq8o/PHASEfilter.egg-info/PKG-INFO
2021-12-30T16:20:04,528   writing dependency_links to /tmp/pip-pip-egg-info-pv4ygq8o/PHASEfilter.egg-info/dependency_links.txt
2021-12-30T16:20:04,531   writing entry points to /tmp/pip-pip-egg-info-pv4ygq8o/PHASEfilter.egg-info/entry_points.txt
2021-12-30T16:20:04,533   writing requirements to /tmp/pip-pip-egg-info-pv4ygq8o/PHASEfilter.egg-info/requires.txt
2021-12-30T16:20:04,535   writing top-level names to /tmp/pip-pip-egg-info-pv4ygq8o/PHASEfilter.egg-info/top_level.txt
2021-12-30T16:20:04,538   writing manifest file '/tmp/pip-pip-egg-info-pv4ygq8o/PHASEfilter.egg-info/SOURCES.txt'
2021-12-30T16:20:04,572   reading manifest file '/tmp/pip-pip-egg-info-pv4ygq8o/PHASEfilter.egg-info/SOURCES.txt'
2021-12-30T16:20:04,582   writing manifest file '/tmp/pip-pip-egg-info-pv4ygq8o/PHASEfilter.egg-info/SOURCES.txt'
2021-12-30T16:20:04,584   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:726: UserWarning: Usage of dash-separated 'dist-dir' will not be supported in future versions. Please use the underscore name 'dist_dir' instead
2021-12-30T16:20:04,584     % (opt, underscore_opt)
2021-12-30T16:20:04,688   Preparing metadata (setup.py): finished with status 'done'
2021-12-30T16:20:04,695   Source in /tmp/pip-wheel-6x6c6ynj/phasefilter_ab323d24fa684efa80b5560db566316c has version 0.3.6, which satisfies requirement phasefilter==0.3.6 from https://files.pythonhosted.org/packages/7f/5b/e32eac2e68f14e5e748667c531bba0160af86aa2ec5e30f748678d8722df/PHASEfilter-0.3.6.tar.gz#sha256=c6c14c7b8e5483a7401dc5433601c83750dfcc4e3452eec937cb342a880dfa66
2021-12-30T16:20:04,697   Removed phasefilter==0.3.6 from https://files.pythonhosted.org/packages/7f/5b/e32eac2e68f14e5e748667c531bba0160af86aa2ec5e30f748678d8722df/PHASEfilter-0.3.6.tar.gz#sha256=c6c14c7b8e5483a7401dc5433601c83750dfcc4e3452eec937cb342a880dfa66 from build tracker '/tmp/pip-req-tracker-3n_7kzl8'
2021-12-30T16:20:04,710 Created temporary directory: /tmp/pip-unpack-8yq5pi_z
2021-12-30T16:20:04,711 Building wheels for collected packages: phasefilter
2021-12-30T16:20:04,719   Created temporary directory: /tmp/pip-wheel-1na27kcb
2021-12-30T16:20:04,720   Building wheel for phasefilter (setup.py): started
2021-12-30T16:20:04,720   Destination directory: /tmp/pip-wheel-1na27kcb
2021-12-30T16:20:04,721   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-6x6c6ynj/phasefilter_ab323d24fa684efa80b5560db566316c/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-6x6c6ynj/phasefilter_ab323d24fa684efa80b5560db566316c/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-1na27kcb
2021-12-30T16:20:06,316   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:726: UserWarning: Usage of dash-separated 'dist-dir' will not be supported in future versions. Please use the underscore name 'dist_dir' instead
2021-12-30T16:20:06,317     % (opt, underscore_opt)
2021-12-30T16:20:06,602   running bdist_wheel
2021-12-30T16:20:06,611   running build
2021-12-30T16:20:06,611   running build_py
2021-12-30T16:20:06,622   creating build
2021-12-30T16:20:06,623   creating build/lib
2021-12-30T16:20:06,624   creating build/lib/PHASEfilter
2021-12-30T16:20:06,626   copying PHASEfilter/__init__.py -> build/lib/PHASEfilter
2021-12-30T16:20:06,631   creating build/lib/PHASEfilter/bin
2021-12-30T16:20:06,632   copying PHASEfilter/bin/make_alignment.py -> build/lib/PHASEfilter/bin
2021-12-30T16:20:06,637   copying PHASEfilter/bin/__init__.py -> build/lib/PHASEfilter/bin
2021-12-30T16:20:06,639   copying PHASEfilter/bin/copy_raw_data_example_phasefilter.py -> build/lib/PHASEfilter/bin
2021-12-30T16:20:06,643   copying PHASEfilter/bin/phasefilter_single.py -> build/lib/PHASEfilter/bin
2021-12-30T16:20:06,647   copying PHASEfilter/bin/reference_statistics.py -> build/lib/PHASEfilter/bin
2021-12-30T16:20:06,651   copying PHASEfilter/bin/phasefilter.py -> build/lib/PHASEfilter/bin
2021-12-30T16:20:06,656   copying PHASEfilter/bin/synchronize_genomes.py -> build/lib/PHASEfilter/bin
2021-12-30T16:20:06,662   creating build/lib/PHASEfilter/lib
2021-12-30T16:20:06,663   copying PHASEfilter/lib/__init__.py -> build/lib/PHASEfilter/lib
2021-12-30T16:20:06,667   creating build/lib/PHASEfilter/tests
2021-12-30T16:20:06,669   copying PHASEfilter/tests/__init__.py -> build/lib/PHASEfilter/tests
2021-12-30T16:20:06,672   copying PHASEfilter/tests/test_software.py -> build/lib/PHASEfilter/tests
2021-12-30T16:20:06,676   copying PHASEfilter/tests/test_lift_over.py -> build/lib/PHASEfilter/tests
2021-12-30T16:20:06,681   copying PHASEfilter/tests/test_utils.py -> build/lib/PHASEfilter/tests
2021-12-30T16:20:06,685   copying PHASEfilter/tests/test_vcf.py -> build/lib/PHASEfilter/tests
2021-12-30T16:20:06,690   copying PHASEfilter/tests/test_synchronization.py -> build/lib/PHASEfilter/tests
2021-12-30T16:20:06,694   copying PHASEfilter/tests/test_run_extra_software.py -> build/lib/PHASEfilter/tests
2021-12-30T16:20:06,698   copying PHASEfilter/tests/test_process_genomes.py -> build/lib/PHASEfilter/tests
2021-12-30T16:20:06,701   copying PHASEfilter/tests/test_reference.py -> build/lib/PHASEfilter/tests
2021-12-30T16:20:06,706   creating build/lib/PHASEfilter/lib/constants
2021-12-30T16:20:06,707   copying PHASEfilter/lib/constants/__init__.py -> build/lib/PHASEfilter/lib/constants
2021-12-30T16:20:06,710   copying PHASEfilter/lib/constants/constants.py -> build/lib/PHASEfilter/lib/constants
2021-12-30T16:20:06,713   copying PHASEfilter/lib/constants/version.py -> build/lib/PHASEfilter/lib/constants
2021-12-30T16:20:06,718   creating build/lib/PHASEfilter/lib/utils
2021-12-30T16:20:06,720   copying PHASEfilter/lib/utils/software.py -> build/lib/PHASEfilter/lib/utils
2021-12-30T16:20:06,723   copying PHASEfilter/lib/utils/__init__.py -> build/lib/PHASEfilter/lib/utils
2021-12-30T16:20:06,726   copying PHASEfilter/lib/utils/lastz_two_sequences.py -> build/lib/PHASEfilter/lib/utils
2021-12-30T16:20:06,730   copying PHASEfilter/lib/utils/blast_two_sequences.py -> build/lib/PHASEfilter/lib/utils
2021-12-30T16:20:06,735   copying PHASEfilter/lib/utils/run_extra_software.py -> build/lib/PHASEfilter/lib/utils
2021-12-30T16:20:06,738   copying PHASEfilter/lib/utils/vcf_process.py -> build/lib/PHASEfilter/lib/utils
2021-12-30T16:20:06,744   copying PHASEfilter/lib/utils/read_gff.py -> build/lib/PHASEfilter/lib/utils
2021-12-30T16:20:06,747   copying PHASEfilter/lib/utils/reference.py -> build/lib/PHASEfilter/lib/utils
2021-12-30T16:20:06,751   copying PHASEfilter/lib/utils/testing_software.py -> build/lib/PHASEfilter/lib/utils
2021-12-30T16:20:06,755   copying PHASEfilter/lib/utils/lift_over_simple.py -> build/lib/PHASEfilter/lib/utils
2021-12-30T16:20:06,761   copying PHASEfilter/lib/utils/util.py -> build/lib/PHASEfilter/lib/utils
2021-12-30T16:20:06,767   creating build/lib/PHASEfilter/lib/process
2021-12-30T16:20:06,769   copying PHASEfilter/lib/process/process_genomes.py -> build/lib/PHASEfilter/lib/process
2021-12-30T16:20:06,774   copying PHASEfilter/lib/process/__init__.py -> build/lib/PHASEfilter/lib/process
2021-12-30T16:20:06,777   copying PHASEfilter/lib/process/process_references.py -> build/lib/PHASEfilter/lib/process
2021-12-30T16:20:06,781   running egg_info
2021-12-30T16:20:06,805   writing PHASEfilter.egg-info/PKG-INFO
2021-12-30T16:20:06,809   writing dependency_links to PHASEfilter.egg-info/dependency_links.txt
2021-12-30T16:20:06,814   writing entry points to PHASEfilter.egg-info/entry_points.txt
2021-12-30T16:20:06,816   writing requirements to PHASEfilter.egg-info/requires.txt
2021-12-30T16:20:06,819   writing top-level names to PHASEfilter.egg-info/top_level.txt
2021-12-30T16:20:06,839   reading manifest file 'PHASEfilter.egg-info/SOURCES.txt'
2021-12-30T16:20:06,853   writing manifest file 'PHASEfilter.egg-info/SOURCES.txt'
2021-12-30T16:20:06,860   copying PHASEfilter/bin/install_phasefilter_dependencies.sh -> build/lib/PHASEfilter/bin
2021-12-30T16:20:06,873   running build_scripts
2021-12-30T16:20:06,874   creating build/scripts-3.7
2021-12-30T16:20:06,877   copying and adjusting PHASEfilter/bin/phasefilter.py -> build/scripts-3.7
2021-12-30T16:20:06,881   copying and adjusting PHASEfilter/bin/phasefilter_single.py -> build/scripts-3.7
2021-12-30T16:20:06,886   copying and adjusting PHASEfilter/bin/make_alignment.py -> build/scripts-3.7
2021-12-30T16:20:06,890   copying and adjusting PHASEfilter/bin/reference_statistics.py -> build/scripts-3.7
2021-12-30T16:20:06,893   copying and adjusting PHASEfilter/bin/synchronize_genomes.py -> build/scripts-3.7
2021-12-30T16:20:06,897   copying and adjusting PHASEfilter/bin/copy_raw_data_example_phasefilter.py -> build/scripts-3.7
2021-12-30T16:20:06,900   copying PHASEfilter/bin/install_phasefilter_dependencies.sh -> build/scripts-3.7
2021-12-30T16:20:06,902   changing mode of build/scripts-3.7/phasefilter.py from 644 to 755
2021-12-30T16:20:06,902   changing mode of build/scripts-3.7/phasefilter_single.py from 644 to 755
2021-12-30T16:20:06,903   changing mode of build/scripts-3.7/make_alignment.py from 644 to 755
2021-12-30T16:20:06,903   changing mode of build/scripts-3.7/reference_statistics.py from 644 to 755
2021-12-30T16:20:06,904   changing mode of build/scripts-3.7/synchronize_genomes.py from 644 to 755
2021-12-30T16:20:06,904   changing mode of build/scripts-3.7/copy_raw_data_example_phasefilter.py from 644 to 755
2021-12-30T16:20:06,911   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2021-12-30T16:20:06,911     setuptools.SetuptoolsDeprecationWarning,
2021-12-30T16:20:06,915   installing to build/bdist.linux-armv7l/wheel
2021-12-30T16:20:06,916   running install
2021-12-30T16:20:06,918   running install_lib
2021-12-30T16:20:06,925   creating build/bdist.linux-armv7l
2021-12-30T16:20:06,925   creating build/bdist.linux-armv7l/wheel
2021-12-30T16:20:06,928   creating build/bdist.linux-armv7l/wheel/PHASEfilter
2021-12-30T16:20:06,931   creating build/bdist.linux-armv7l/wheel/PHASEfilter/bin
2021-12-30T16:20:06,933   copying build/lib/PHASEfilter/bin/make_alignment.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/bin
2021-12-30T16:20:06,937   copying build/lib/PHASEfilter/bin/__init__.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/bin
2021-12-30T16:20:06,940   copying build/lib/PHASEfilter/bin/copy_raw_data_example_phasefilter.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/bin
2021-12-30T16:20:06,943   copying build/lib/PHASEfilter/bin/phasefilter_single.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/bin
2021-12-30T16:20:06,947   copying build/lib/PHASEfilter/bin/reference_statistics.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/bin
2021-12-30T16:20:06,950   copying build/lib/PHASEfilter/bin/phasefilter.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/bin
2021-12-30T16:20:06,954   copying build/lib/PHASEfilter/bin/install_phasefilter_dependencies.sh -> build/bdist.linux-armv7l/wheel/PHASEfilter/bin
2021-12-30T16:20:06,958   copying build/lib/PHASEfilter/bin/synchronize_genomes.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/bin
2021-12-30T16:20:06,961   copying build/lib/PHASEfilter/__init__.py -> build/bdist.linux-armv7l/wheel/PHASEfilter
2021-12-30T16:20:06,965   creating build/bdist.linux-armv7l/wheel/PHASEfilter/lib
2021-12-30T16:20:06,968   creating build/bdist.linux-armv7l/wheel/PHASEfilter/lib/constants
2021-12-30T16:20:06,969   copying build/lib/PHASEfilter/lib/constants/__init__.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/constants
2021-12-30T16:20:06,972   copying build/lib/PHASEfilter/lib/constants/constants.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/constants
2021-12-30T16:20:06,976   copying build/lib/PHASEfilter/lib/constants/version.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/constants
2021-12-30T16:20:06,979   copying build/lib/PHASEfilter/lib/__init__.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib
2021-12-30T16:20:06,983   creating build/bdist.linux-armv7l/wheel/PHASEfilter/lib/utils
2021-12-30T16:20:06,984   copying build/lib/PHASEfilter/lib/utils/software.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/utils
2021-12-30T16:20:06,988   copying build/lib/PHASEfilter/lib/utils/__init__.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/utils
2021-12-30T16:20:06,992   copying build/lib/PHASEfilter/lib/utils/lastz_two_sequences.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/utils
2021-12-30T16:20:06,996   copying build/lib/PHASEfilter/lib/utils/blast_two_sequences.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/utils
2021-12-30T16:20:07,002   copying build/lib/PHASEfilter/lib/utils/run_extra_software.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/utils
2021-12-30T16:20:07,006   copying build/lib/PHASEfilter/lib/utils/vcf_process.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/utils
2021-12-30T16:20:07,011   copying build/lib/PHASEfilter/lib/utils/read_gff.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/utils
2021-12-30T16:20:07,014   copying build/lib/PHASEfilter/lib/utils/reference.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/utils
2021-12-30T16:20:07,018   copying build/lib/PHASEfilter/lib/utils/testing_software.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/utils
2021-12-30T16:20:07,021   copying build/lib/PHASEfilter/lib/utils/lift_over_simple.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/utils
2021-12-30T16:20:07,027   copying build/lib/PHASEfilter/lib/utils/util.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/utils
2021-12-30T16:20:07,033   creating build/bdist.linux-armv7l/wheel/PHASEfilter/lib/process
2021-12-30T16:20:07,035   copying build/lib/PHASEfilter/lib/process/process_genomes.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/process
2021-12-30T16:20:07,039   copying build/lib/PHASEfilter/lib/process/__init__.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/process
2021-12-30T16:20:07,042   copying build/lib/PHASEfilter/lib/process/process_references.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/lib/process
2021-12-30T16:20:07,048   creating build/bdist.linux-armv7l/wheel/PHASEfilter/tests
2021-12-30T16:20:07,049   copying build/lib/PHASEfilter/tests/__init__.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/tests
2021-12-30T16:20:07,052   copying build/lib/PHASEfilter/tests/test_software.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/tests
2021-12-30T16:20:07,056   copying build/lib/PHASEfilter/tests/test_lift_over.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/tests
2021-12-30T16:20:07,061   copying build/lib/PHASEfilter/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/tests
2021-12-30T16:20:07,064   copying build/lib/PHASEfilter/tests/test_vcf.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/tests
2021-12-30T16:20:07,069   copying build/lib/PHASEfilter/tests/test_synchronization.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/tests
2021-12-30T16:20:07,073   copying build/lib/PHASEfilter/tests/test_run_extra_software.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/tests
2021-12-30T16:20:07,077   copying build/lib/PHASEfilter/tests/test_process_genomes.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/tests
2021-12-30T16:20:07,081   copying build/lib/PHASEfilter/tests/test_reference.py -> build/bdist.linux-armv7l/wheel/PHASEfilter/tests
2021-12-30T16:20:07,084   running install_egg_info
2021-12-30T16:20:07,099   Copying PHASEfilter.egg-info to build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.6-py3.7.egg-info
2021-12-30T16:20:07,125   running install_scripts
2021-12-30T16:20:07,245   creating build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.6.data
2021-12-30T16:20:07,245   creating build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.6.data/scripts
2021-12-30T16:20:07,247   copying build/scripts-3.7/make_alignment.py -> build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.6.data/scripts
2021-12-30T16:20:07,251   copying build/scripts-3.7/copy_raw_data_example_phasefilter.py -> build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.6.data/scripts
2021-12-30T16:20:07,254   copying build/scripts-3.7/phasefilter_single.py -> build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.6.data/scripts
2021-12-30T16:20:07,258   copying build/scripts-3.7/reference_statistics.py -> build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.6.data/scripts
2021-12-30T16:20:07,262   copying build/scripts-3.7/phasefilter.py -> build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.6.data/scripts
2021-12-30T16:20:07,266   copying build/scripts-3.7/install_phasefilter_dependencies.sh -> build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.6.data/scripts
2021-12-30T16:20:07,269   copying build/scripts-3.7/synchronize_genomes.py -> build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.6.data/scripts
2021-12-30T16:20:07,272   changing mode of build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.6.data/scripts/make_alignment.py to 755
2021-12-30T16:20:07,273   changing mode of build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.6.data/scripts/copy_raw_data_example_phasefilter.py to 755
2021-12-30T16:20:07,273   changing mode of build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.6.data/scripts/phasefilter_single.py to 755
2021-12-30T16:20:07,273   changing mode of build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.6.data/scripts/reference_statistics.py to 755
2021-12-30T16:20:07,274   changing mode of build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.6.data/scripts/phasefilter.py to 755
2021-12-30T16:20:07,274   changing mode of build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.6.data/scripts/install_phasefilter_dependencies.sh to 755
2021-12-30T16:20:07,275   changing mode of build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.6.data/scripts/synchronize_genomes.py to 755
2021-12-30T16:20:07,331   creating build/bdist.linux-armv7l/wheel/PHASEfilter-0.3.6.dist-info/WHEEL
2021-12-30T16:20:07,335   creating '/tmp/pip-wheel-1na27kcb/PHASEfilter-0.3.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-12-30T16:20:07,339   adding 'PHASEfilter/__init__.py'
2021-12-30T16:20:07,342   adding 'PHASEfilter/bin/__init__.py'
2021-12-30T16:20:07,345   adding 'PHASEfilter/bin/copy_raw_data_example_phasefilter.py'
2021-12-30T16:20:07,347   adding 'PHASEfilter/bin/install_phasefilter_dependencies.sh'
2021-12-30T16:20:07,350   adding 'PHASEfilter/bin/make_alignment.py'
2021-12-30T16:20:07,354   adding 'PHASEfilter/bin/phasefilter.py'
2021-12-30T16:20:07,357   adding 'PHASEfilter/bin/phasefilter_single.py'
2021-12-30T16:20:07,360   adding 'PHASEfilter/bin/reference_statistics.py'
2021-12-30T16:20:07,363   adding 'PHASEfilter/bin/synchronize_genomes.py'
2021-12-30T16:20:07,366   adding 'PHASEfilter/lib/__init__.py'
2021-12-30T16:20:07,369   adding 'PHASEfilter/lib/constants/__init__.py'
2021-12-30T16:20:07,371   adding 'PHASEfilter/lib/constants/constants.py'
2021-12-30T16:20:07,373   adding 'PHASEfilter/lib/constants/version.py'
2021-12-30T16:20:07,376   adding 'PHASEfilter/lib/process/__init__.py'
2021-12-30T16:20:07,379   adding 'PHASEfilter/lib/process/process_genomes.py'
2021-12-30T16:20:07,382   adding 'PHASEfilter/lib/process/process_references.py'
2021-12-30T16:20:07,386   adding 'PHASEfilter/lib/utils/__init__.py'
2021-12-30T16:20:07,393   adding 'PHASEfilter/lib/utils/blast_two_sequences.py'
2021-12-30T16:20:07,396   adding 'PHASEfilter/lib/utils/lastz_two_sequences.py'
2021-12-30T16:20:07,406   adding 'PHASEfilter/lib/utils/lift_over_simple.py'
2021-12-30T16:20:07,431   adding 'PHASEfilter/lib/utils/read_gff.py'
2021-12-30T16:20:07,434   adding 'PHASEfilter/lib/utils/reference.py'
2021-12-30T16:20:07,437   adding 'PHASEfilter/lib/utils/run_extra_software.py'
2021-12-30T16:20:07,440   adding 'PHASEfilter/lib/utils/software.py'
2021-12-30T16:20:07,442   adding 'PHASEfilter/lib/utils/testing_software.py'
2021-12-30T16:20:07,494   adding 'PHASEfilter/lib/utils/util.py'
2021-12-30T16:20:07,501   adding 'PHASEfilter/lib/utils/vcf_process.py'
2021-12-30T16:20:07,504   adding 'PHASEfilter/tests/__init__.py'
2021-12-30T16:20:07,509   adding 'PHASEfilter/tests/test_lift_over.py'
2021-12-30T16:20:07,511   adding 'PHASEfilter/tests/test_process_genomes.py'
2021-12-30T16:20:07,514   adding 'PHASEfilter/tests/test_reference.py'
2021-12-30T16:20:07,516   adding 'PHASEfilter/tests/test_run_extra_software.py'
2021-12-30T16:20:07,519   adding 'PHASEfilter/tests/test_software.py'
2021-12-30T16:20:07,522   adding 'PHASEfilter/tests/test_synchronization.py'
2021-12-30T16:20:07,525   adding 'PHASEfilter/tests/test_utils.py'
2021-12-30T16:20:07,529   adding 'PHASEfilter/tests/test_vcf.py'
2021-12-30T16:20:07,534   adding 'PHASEfilter-0.3.6.data/scripts/copy_raw_data_example_phasefilter.py'
2021-12-30T16:20:07,536   adding 'PHASEfilter-0.3.6.data/scripts/install_phasefilter_dependencies.sh'
2021-12-30T16:20:07,539   adding 'PHASEfilter-0.3.6.data/scripts/make_alignment.py'
2021-12-30T16:20:07,542   adding 'PHASEfilter-0.3.6.data/scripts/phasefilter.py'
2021-12-30T16:20:07,545   adding 'PHASEfilter-0.3.6.data/scripts/phasefilter_single.py'
2021-12-30T16:20:07,548   adding 'PHASEfilter-0.3.6.data/scripts/reference_statistics.py'
2021-12-30T16:20:07,551   adding 'PHASEfilter-0.3.6.data/scripts/synchronize_genomes.py'
2021-12-30T16:20:07,555   adding 'PHASEfilter-0.3.6.dist-info/METADATA'
2021-12-30T16:20:07,557   adding 'PHASEfilter-0.3.6.dist-info/WHEEL'
2021-12-30T16:20:07,558   adding 'PHASEfilter-0.3.6.dist-info/entry_points.txt'
2021-12-30T16:20:07,560   adding 'PHASEfilter-0.3.6.dist-info/top_level.txt'
2021-12-30T16:20:07,561   adding 'PHASEfilter-0.3.6.dist-info/RECORD'
2021-12-30T16:20:07,568   removing build/bdist.linux-armv7l/wheel
2021-12-30T16:20:07,715   Building wheel for phasefilter (setup.py): finished with status 'done'
2021-12-30T16:20:07,721   Created wheel for phasefilter: filename=PHASEfilter-0.3.6-py3-none-any.whl size=87600 sha256=a7afd823c160a6c47d0e5a3e2cf8223835de50f0f8285d4d631768efbdff1dbe
2021-12-30T16:20:07,722   Stored in directory: /tmp/pip-ephem-wheel-cache-ifmianra/wheels/17/f9/a3/ef58a094d154e91586f7b74e452cf6d903e1ea53e980638913
2021-12-30T16:20:07,747 Successfully built phasefilter
2021-12-30T16:20:07,761 Removed build tracker: '/tmp/pip-req-tracker-3n_7kzl8'