2022-01-03T13:35:53,561 Created temporary directory: /tmp/pip-ephem-wheel-cache-wrn5atu6
2022-01-03T13:35:53,567 Created temporary directory: /tmp/pip-req-tracker-m_n8khhl
2022-01-03T13:35:53,568 Initialized build tracking at /tmp/pip-req-tracker-m_n8khhl
2022-01-03T13:35:53,568 Created build tracker: /tmp/pip-req-tracker-m_n8khhl
2022-01-03T13:35:53,568 Entered build tracker: /tmp/pip-req-tracker-m_n8khhl
2022-01-03T13:35:53,570 Created temporary directory: /tmp/pip-wheel-61mx9o63
2022-01-03T13:35:53,640 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-01-03T13:35:53,645 2 location(s) to search for versions of rattlesnp:
2022-01-03T13:35:53,645 * https://pypi.org/simple/rattlesnp/
2022-01-03T13:35:53,645 * https://www.piwheels.org/simple/rattlesnp/
2022-01-03T13:35:53,646 Fetching project page and analyzing links: https://pypi.org/simple/rattlesnp/
2022-01-03T13:35:53,647 Getting page https://pypi.org/simple/rattlesnp/
2022-01-03T13:35:53,651 Found index url https://pypi.org/simple
2022-01-03T13:35:53,848   Skipping link: No binaries permitted for rattlesnp: https://files.pythonhosted.org/packages/95/7c/5375b0373ced70a3896b867d20aa0f16c8e4e7df14c5b7aef1c4e76e8868/RattleSNP-1.0.0-py3-none-any.whl#sha256=a3e4b0922142fb897d1816d5dbe5c8921f0a7f498e135cab0959d7b0f310cace (from https://pypi.org/simple/rattlesnp/) (requires-python:>=3.6)
2022-01-03T13:35:53,849   Found link https://files.pythonhosted.org/packages/4a/ce/b196105d45b6009e8206ed2f40848b1772007394ef0fa070d7146e8aca64/RattleSNP-1.0.0.tar.gz#sha256=13be75f0a5ab4899da73150da9ef4326a8eacf2a649f957dfdac31b71a5c1aac (from https://pypi.org/simple/rattlesnp/) (requires-python:>=3.6), version: 1.0.0
2022-01-03T13:35:53,850 Fetching project page and analyzing links: https://www.piwheels.org/simple/rattlesnp/
2022-01-03T13:35:53,851 Getting page https://www.piwheels.org/simple/rattlesnp/
2022-01-03T13:35:53,853 Found index url https://www.piwheels.org/simple
2022-01-03T13:35:54,079 Skipping link: not a file: https://www.piwheels.org/simple/rattlesnp/
2022-01-03T13:35:54,080 Skipping link: not a file: https://pypi.org/simple/rattlesnp/
2022-01-03T13:35:54,112 Given no hashes to check 1 links for project 'rattlesnp': discarding no candidates
2022-01-03T13:35:54,142 Collecting rattlesnp==1.0.0
2022-01-03T13:35:54,145   Created temporary directory: /tmp/pip-unpack-hgyi84p6
2022-01-03T13:35:55,068   Downloading RattleSNP-1.0.0.tar.gz (365 kB)
2022-01-03T13:35:55,424   Added rattlesnp==1.0.0 from https://files.pythonhosted.org/packages/4a/ce/b196105d45b6009e8206ed2f40848b1772007394ef0fa070d7146e8aca64/RattleSNP-1.0.0.tar.gz#sha256=13be75f0a5ab4899da73150da9ef4326a8eacf2a649f957dfdac31b71a5c1aac to build tracker '/tmp/pip-req-tracker-m_n8khhl'
2022-01-03T13:35:55,425   Running setup.py (path:/tmp/pip-wheel-61mx9o63/rattlesnp_164839e2a9de436985e0f534870b4f75/setup.py) egg_info for package rattlesnp
2022-01-03T13:35:55,426   Created temporary directory: /tmp/pip-pip-egg-info-umjv36tk
2022-01-03T13:35:55,427   Preparing metadata (setup.py): started
2022-01-03T13:35:55,428   Running command python setup.py egg_info
2022-01-03T13:35:57,367   running egg_info
2022-01-03T13:35:57,371   creating /tmp/pip-pip-egg-info-umjv36tk/RattleSNP.egg-info
2022-01-03T13:35:57,373   writing /tmp/pip-pip-egg-info-umjv36tk/RattleSNP.egg-info/PKG-INFO
2022-01-03T13:35:57,378   writing dependency_links to /tmp/pip-pip-egg-info-umjv36tk/RattleSNP.egg-info/dependency_links.txt
2022-01-03T13:35:57,381   writing entry points to /tmp/pip-pip-egg-info-umjv36tk/RattleSNP.egg-info/entry_points.txt
2022-01-03T13:35:57,384   writing requirements to /tmp/pip-pip-egg-info-umjv36tk/RattleSNP.egg-info/requires.txt
2022-01-03T13:35:57,386   writing top-level names to /tmp/pip-pip-egg-info-umjv36tk/RattleSNP.egg-info/top_level.txt
2022-01-03T13:35:57,390   writing manifest file '/tmp/pip-pip-egg-info-umjv36tk/RattleSNP.egg-info/SOURCES.txt'
2022-01-03T13:35:57,415   reading manifest file '/tmp/pip-pip-egg-info-umjv36tk/RattleSNP.egg-info/SOURCES.txt'
2022-01-03T13:35:57,423   writing manifest file '/tmp/pip-pip-egg-info-umjv36tk/RattleSNP.egg-info/SOURCES.txt'
2022-01-03T13:35:57,526   Preparing metadata (setup.py): finished with status 'done'
2022-01-03T13:35:57,535   Source in /tmp/pip-wheel-61mx9o63/rattlesnp_164839e2a9de436985e0f534870b4f75 has version 1.0.0, which satisfies requirement rattlesnp==1.0.0 from https://files.pythonhosted.org/packages/4a/ce/b196105d45b6009e8206ed2f40848b1772007394ef0fa070d7146e8aca64/RattleSNP-1.0.0.tar.gz#sha256=13be75f0a5ab4899da73150da9ef4326a8eacf2a649f957dfdac31b71a5c1aac
2022-01-03T13:35:57,537   Removed rattlesnp==1.0.0 from https://files.pythonhosted.org/packages/4a/ce/b196105d45b6009e8206ed2f40848b1772007394ef0fa070d7146e8aca64/RattleSNP-1.0.0.tar.gz#sha256=13be75f0a5ab4899da73150da9ef4326a8eacf2a649f957dfdac31b71a5c1aac from build tracker '/tmp/pip-req-tracker-m_n8khhl'
2022-01-03T13:35:57,550 Created temporary directory: /tmp/pip-unpack-iq4tb972
2022-01-03T13:35:57,551 Building wheels for collected packages: rattlesnp
2022-01-03T13:35:57,560   Created temporary directory: /tmp/pip-wheel-fiyjgp3d
2022-01-03T13:35:57,560   Building wheel for rattlesnp (setup.py): started
2022-01-03T13:35:57,562   Destination directory: /tmp/pip-wheel-fiyjgp3d
2022-01-03T13:35:57,563   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-61mx9o63/rattlesnp_164839e2a9de436985e0f534870b4f75/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-61mx9o63/rattlesnp_164839e2a9de436985e0f534870b4f75/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-fiyjgp3d
2022-01-03T13:35:59,519   running bdist_wheel
2022-01-03T13:35:59,528   running build
2022-01-03T13:35:59,528   running build_py
2022-01-03T13:35:59,538   creating build
2022-01-03T13:35:59,539   creating build/lib
2022-01-03T13:35:59,540   creating build/lib/rattleSNP
2022-01-03T13:35:59,542   copying rattleSNP/__init__.py -> build/lib/rattleSNP
2022-01-03T13:35:59,546   copying rattleSNP/main.py -> build/lib/rattleSNP
2022-01-03T13:35:59,549   copying rattleSNP/run.py -> build/lib/rattleSNP
2022-01-03T13:35:59,553   copying rattleSNP/edit_files.py -> build/lib/rattleSNP
2022-01-03T13:35:59,556   copying rattleSNP/install.py -> build/lib/rattleSNP
2022-01-03T13:35:59,561   copying rattleSNP/global_variable.py -> build/lib/rattleSNP
2022-01-03T13:35:59,564   copying rattleSNP/snakemake_module.py -> build/lib/rattleSNP
2022-01-03T13:35:59,569   copying rattleSNP/usefull_function.py -> build/lib/rattleSNP
2022-01-03T13:35:59,574   creating build/lib/rattleSNP/scripts
2022-01-03T13:35:59,576   copying rattleSNP/scripts/__init__.py -> build/lib/rattleSNP/scripts
2022-01-03T13:35:59,579   copying rattleSNP/scripts/vcf2geno.py -> build/lib/rattleSNP/scripts
2022-01-03T13:35:59,583   copying rattleSNP/scripts/vcf2phylip.py -> build/lib/rattleSNP/scripts
2022-01-03T13:35:59,586   running egg_info
2022-01-03T13:35:59,611   writing RattleSNP.egg-info/PKG-INFO
2022-01-03T13:35:59,615   writing dependency_links to RattleSNP.egg-info/dependency_links.txt
2022-01-03T13:35:59,619   writing entry points to RattleSNP.egg-info/entry_points.txt
2022-01-03T13:35:59,621   writing requirements to RattleSNP.egg-info/requires.txt
2022-01-03T13:35:59,624   writing top-level names to RattleSNP.egg-info/top_level.txt
2022-01-03T13:35:59,640   reading manifest file 'RattleSNP.egg-info/SOURCES.txt'
2022-01-03T13:35:59,660   writing manifest file 'RattleSNP.egg-info/SOURCES.txt'
2022-01-03T13:35:59,671   copying rattleSNP/VERSION -> build/lib/rattleSNP
2022-01-03T13:35:59,675   copying rattleSNP/rattleSNP-complete.sh -> build/lib/rattleSNP
2022-01-03T13:35:59,680   creating build/lib/rattleSNP/install_files
2022-01-03T13:35:59,682   copying rattleSNP/install_files/cluster_config_SLURM.yaml -> build/lib/rattleSNP/install_files
2022-01-03T13:35:59,687   copying rattleSNP/install_files/config.yaml -> build/lib/rattleSNP/install_files
2022-01-03T13:35:59,691   copying rattleSNP/install_files/tools_path.yaml -> build/lib/rattleSNP/install_files
2022-01-03T13:35:59,695   creating build/lib/rattleSNP/snakefiles
2022-01-03T13:35:59,697   copying rattleSNP/snakefiles/Snakefile -> build/lib/rattleSNP/snakefiles
2022-01-03T13:35:59,704   creating build/lib/rattleSNP/snakemake_scripts
2022-01-03T13:35:59,706   copying rattleSNP/snakemake_scripts/rattleSNP_module.py -> build/lib/rattleSNP/snakemake_scripts
2022-01-03T13:35:59,710   copying rattleSNP/snakemake_scripts/report.Rmd -> build/lib/rattleSNP/snakemake_scripts
2022-01-03T13:35:59,714   copying rattleSNP/snakemake_scripts/report_vcf.Rmd -> build/lib/rattleSNP/snakemake_scripts
2022-01-03T13:35:59,736   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-01-03T13:35:59,736     setuptools.SetuptoolsDeprecationWarning,
2022-01-03T13:35:59,740   installing to build/bdist.linux-armv7l/wheel
2022-01-03T13:35:59,741   running install
2022-01-03T13:35:59,743   running install_lib
2022-01-03T13:35:59,750   creating build/bdist.linux-armv7l
2022-01-03T13:35:59,751   creating build/bdist.linux-armv7l/wheel
2022-01-03T13:35:59,754   creating build/bdist.linux-armv7l/wheel/rattleSNP
2022-01-03T13:35:59,756   creating build/bdist.linux-armv7l/wheel/rattleSNP/scripts
2022-01-03T13:35:59,758   copying build/lib/rattleSNP/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/rattleSNP/scripts
2022-01-03T13:35:59,761   copying build/lib/rattleSNP/scripts/vcf2geno.py -> build/bdist.linux-armv7l/wheel/rattleSNP/scripts
2022-01-03T13:35:59,765   copying build/lib/rattleSNP/scripts/vcf2phylip.py -> build/bdist.linux-armv7l/wheel/rattleSNP/scripts
2022-01-03T13:35:59,769   copying build/lib/rattleSNP/rattleSNP-complete.sh -> build/bdist.linux-armv7l/wheel/rattleSNP
2022-01-03T13:35:59,772   copying build/lib/rattleSNP/__init__.py -> build/bdist.linux-armv7l/wheel/rattleSNP
2022-01-03T13:35:59,777   creating build/bdist.linux-armv7l/wheel/rattleSNP/install_files
2022-01-03T13:35:59,778   copying build/lib/rattleSNP/install_files/config.yaml -> build/bdist.linux-armv7l/wheel/rattleSNP/install_files
2022-01-03T13:35:59,782   copying build/lib/rattleSNP/install_files/tools_path.yaml -> build/bdist.linux-armv7l/wheel/rattleSNP/install_files
2022-01-03T13:35:59,785   copying build/lib/rattleSNP/install_files/cluster_config_SLURM.yaml -> build/bdist.linux-armv7l/wheel/rattleSNP/install_files
2022-01-03T13:35:59,788   copying build/lib/rattleSNP/main.py -> build/bdist.linux-armv7l/wheel/rattleSNP
2022-01-03T13:35:59,792   copying build/lib/rattleSNP/VERSION -> build/bdist.linux-armv7l/wheel/rattleSNP
2022-01-03T13:35:59,795   copying build/lib/rattleSNP/run.py -> build/bdist.linux-armv7l/wheel/rattleSNP
2022-01-03T13:35:59,800   creating build/bdist.linux-armv7l/wheel/rattleSNP/snakemake_scripts
2022-01-03T13:35:59,801   copying build/lib/rattleSNP/snakemake_scripts/report.Rmd -> build/bdist.linux-armv7l/wheel/rattleSNP/snakemake_scripts
2022-01-03T13:35:59,804   copying build/lib/rattleSNP/snakemake_scripts/report_vcf.Rmd -> build/bdist.linux-armv7l/wheel/rattleSNP/snakemake_scripts
2022-01-03T13:35:59,809   copying build/lib/rattleSNP/snakemake_scripts/rattleSNP_module.py -> build/bdist.linux-armv7l/wheel/rattleSNP/snakemake_scripts
2022-01-03T13:35:59,812   copying build/lib/rattleSNP/edit_files.py -> build/bdist.linux-armv7l/wheel/rattleSNP
2022-01-03T13:35:59,815   copying build/lib/rattleSNP/install.py -> build/bdist.linux-armv7l/wheel/rattleSNP
2022-01-03T13:35:59,818   copying build/lib/rattleSNP/global_variable.py -> build/bdist.linux-armv7l/wheel/rattleSNP
2022-01-03T13:35:59,821   copying build/lib/rattleSNP/snakemake_module.py -> build/bdist.linux-armv7l/wheel/rattleSNP
2022-01-03T13:35:59,826   creating build/bdist.linux-armv7l/wheel/rattleSNP/snakefiles
2022-01-03T13:35:59,828   copying build/lib/rattleSNP/snakefiles/Snakefile -> build/bdist.linux-armv7l/wheel/rattleSNP/snakefiles
2022-01-03T13:35:59,835   copying build/lib/rattleSNP/usefull_function.py -> build/bdist.linux-armv7l/wheel/rattleSNP
2022-01-03T13:35:59,839   running install_egg_info
2022-01-03T13:35:59,853   Copying RattleSNP.egg-info to build/bdist.linux-armv7l/wheel/RattleSNP-1.0.0-py3.7.egg-info
2022-01-03T13:35:59,877   running install_scripts
2022-01-03T13:36:00,074   creating build/bdist.linux-armv7l/wheel/RattleSNP-1.0.0.dist-info/WHEEL
2022-01-03T13:36:00,079   creating '/tmp/pip-wheel-fiyjgp3d/RattleSNP-1.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-01-03T13:36:00,086   adding 'rattleSNP/VERSION'
2022-01-03T13:36:00,089   adding 'rattleSNP/__init__.py'
2022-01-03T13:36:00,091   adding 'rattleSNP/edit_files.py'
2022-01-03T13:36:00,093   adding 'rattleSNP/global_variable.py'
2022-01-03T13:36:00,096   adding 'rattleSNP/install.py'
2022-01-03T13:36:00,099   adding 'rattleSNP/main.py'
2022-01-03T13:36:00,101   adding 'rattleSNP/rattleSNP-complete.sh'
2022-01-03T13:36:00,104   adding 'rattleSNP/run.py'
2022-01-03T13:36:00,108   adding 'rattleSNP/snakemake_module.py'
2022-01-03T13:36:00,111   adding 'rattleSNP/usefull_function.py'
2022-01-03T13:36:00,114   adding 'rattleSNP/install_files/cluster_config_SLURM.yaml'
2022-01-03T13:36:00,117   adding 'rattleSNP/install_files/config.yaml'
2022-01-03T13:36:00,119   adding 'rattleSNP/install_files/tools_path.yaml'
2022-01-03T13:36:00,121   adding 'rattleSNP/scripts/__init__.py'
2022-01-03T13:36:00,125   adding 'rattleSNP/scripts/vcf2geno.py'
2022-01-03T13:36:00,130   adding 'rattleSNP/scripts/vcf2phylip.py'
2022-01-03T13:36:00,139   adding 'rattleSNP/snakefiles/Snakefile'
2022-01-03T13:36:00,143   adding 'rattleSNP/snakemake_scripts/rattleSNP_module.py'
2022-01-03T13:36:00,145   adding 'rattleSNP/snakemake_scripts/report.Rmd'
2022-01-03T13:36:00,150   adding 'rattleSNP/snakemake_scripts/report_vcf.Rmd'
2022-01-03T13:36:00,152   adding 'RattleSNP-1.0.0.dist-info/METADATA'
2022-01-03T13:36:00,154   adding 'RattleSNP-1.0.0.dist-info/WHEEL'
2022-01-03T13:36:00,155   adding 'RattleSNP-1.0.0.dist-info/entry_points.txt'
2022-01-03T13:36:00,157   adding 'RattleSNP-1.0.0.dist-info/top_level.txt'
2022-01-03T13:36:00,158   adding 'RattleSNP-1.0.0.dist-info/RECORD'
2022-01-03T13:36:00,161   removing build/bdist.linux-armv7l/wheel
2022-01-03T13:36:00,298   Building wheel for rattlesnp (setup.py): finished with status 'done'
2022-01-03T13:36:00,303   Created wheel for rattlesnp: filename=RattleSNP-1.0.0-py3-none-any.whl size=41252 sha256=f5793df7ad81c491f6bd50529689f6b0f7a1fec980e1f9e3cf0ab73e089e7cca
2022-01-03T13:36:00,304   Stored in directory: /tmp/pip-ephem-wheel-cache-wrn5atu6/wheels/17/56/af/c39e10875bca1871ef8094c2194b6dec445969e792ba5f8e63
2022-01-03T13:36:00,327 Successfully built rattlesnp
2022-01-03T13:36:00,334 Removed build tracker: '/tmp/pip-req-tracker-m_n8khhl'