2022-01-06T20:27:59,947 Created temporary directory: /tmp/pip-ephem-wheel-cache-iqkxjw0p
2022-01-06T20:27:59,952 Created temporary directory: /tmp/pip-req-tracker-c6a_m0jv
2022-01-06T20:27:59,953 Initialized build tracking at /tmp/pip-req-tracker-c6a_m0jv
2022-01-06T20:27:59,953 Created build tracker: /tmp/pip-req-tracker-c6a_m0jv
2022-01-06T20:27:59,953 Entered build tracker: /tmp/pip-req-tracker-c6a_m0jv
2022-01-06T20:27:59,955 Created temporary directory: /tmp/pip-wheel-hyo0n5xo
2022-01-06T20:28:00,025 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-01-06T20:28:00,030 2 location(s) to search for versions of oxdna-analysis-tools:
2022-01-06T20:28:00,030 * https://pypi.org/simple/oxdna-analysis-tools/
2022-01-06T20:28:00,030 * https://www.piwheels.org/simple/oxdna-analysis-tools/
2022-01-06T20:28:00,031 Fetching project page and analyzing links: https://pypi.org/simple/oxdna-analysis-tools/
2022-01-06T20:28:00,032 Getting page https://pypi.org/simple/oxdna-analysis-tools/
2022-01-06T20:28:00,036 Found index url https://pypi.org/simple
2022-01-06T20:28:00,259   Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/ac/f8/60aaa35eef859722960ae6fc01c379801cfe84dac081cb16bc5211209e00/oxDNA_analysis_tools-1.0.0-py3-none-any.whl#sha256=aad31ef6b41c10ea9ed03f1625b7ee8ce0834704a848c6e1f6c28dce20b2711b (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6)
2022-01-06T20:28:00,261   Found link https://files.pythonhosted.org/packages/4a/e5/47c5d6daa03dabd733883bf55cb8d816ea67d906f1fcb488f5153f4dc43e/oxDNA_analysis_tools-1.0.0.tar.gz#sha256=a75fb26c9d1d87688c7312fdd6d2e1bd16230c8f74f80fb2291eeaf168c056ee (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.0
2022-01-06T20:28:00,262   Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/89/ff/395029dea21f844393d989cbb26c614dd86f822bba65d78ed5a7748aca6a/oxDNA_analysis_tools-1.0.1-py3-none-any.whl#sha256=3221408dd47a42b38484906b35d19479588ff4069288f9ce7d7817897da455c7 (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6)
2022-01-06T20:28:00,263   Found link https://files.pythonhosted.org/packages/df/13/17bfb0a3fd14aa842b566f34308d54529d61ea01fada217af9048971d50c/oxDNA_analysis_tools-1.0.1.tar.gz#sha256=a3e8ae09b1258872561a5559f458a72942879cba8a07a0f24caaec7e409d4cb1 (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.1
2022-01-06T20:28:00,264   Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/82/49/f5e696f37f5715a0aeb1ef04eb86660c5659ef4bf2f4fb8903dc7227e118/oxDNA_analysis_tools-1.0.2-py3-none-any.whl#sha256=16719e55b02c4da05c3f2f954c4e5dc43e599213876539e8abff5160cd0caece (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6)
2022-01-06T20:28:00,265   Found link https://files.pythonhosted.org/packages/bd/6b/e166213edbf00187bef6d70c7daee7bc8625c0bd19ac3ae69c8539ae7a7e/oxDNA_analysis_tools-1.0.2.tar.gz#sha256=eb4037d3f8bd3fba22869a4943f22150ae63490cd50545d1111b07d3c451888b (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.2
2022-01-06T20:28:00,265   Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/b6/48/a7c32e7f8151ef9264a06fd34867dea00837b051bdf5bbcbb47885f73255/oxDNA_analysis_tools-1.0.3-py3-none-any.whl#sha256=625f26605d02045c0d28fddac24dd9d32c7c24955523934f2e6b51b6f65a2ab3 (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6)
2022-01-06T20:28:00,267   Found link https://files.pythonhosted.org/packages/53/06/9aed49b26bd128a8f7e71ed194fa272f728fc33c4baef8b5da0fac64fd10/oxDNA_analysis_tools-1.0.3.tar.gz#sha256=cd88c844745c0b5e654a1a3b6277b9ca0ca49b48d9336696d93e03b6eb141d5f (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.3
2022-01-06T20:28:00,267   Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/fd/bc/d7dbd66a4ead9938f87ffd7ca7df5541bada53ec04f0921653f1fa99e8a8/oxDNA_analysis_tools-1.0.4-py3-none-any.whl#sha256=edaa407ef1195e50f52df03b878336731589e054b96e62f6661a488b7f93c77e (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6)
2022-01-06T20:28:00,269   Found link https://files.pythonhosted.org/packages/2a/2c/2539d24739d7e4fbd5ad09d7bc127c61aa802130e2460a14dd07f5812ac4/oxDNA_analysis_tools-1.0.4.tar.gz#sha256=a56bce0d18558282b523d9cdbfea31785def7456c14cf4c2102866a0a4e78387 (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.4
2022-01-06T20:28:00,269   Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/bf/0d/a9da9beb9a7bd71866a835fa8aa2f07811d666644c916aa2765add616e05/oxDNA_analysis_tools-1.0.5-py3-none-any.whl#sha256=7edbf6f2d55ac4cb5f7fecd7cf00df2c38f92710de1da90559ddc92d622c827f (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6)
2022-01-06T20:28:00,271   Found link https://files.pythonhosted.org/packages/89/1d/8292c563a5aaad1f604049db7273368ea18b868c75dc2d88b70695ac3bbd/oxDNA_analysis_tools-1.0.5.tar.gz#sha256=6c993e210fbe9f3d1d7f85d615419e2687f8f780bc1f94716fc9bb59f47db9fd (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.5
2022-01-06T20:28:00,271   Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/4d/bb/b8db0b9c032ff28cc4416a2f4d6ad23a76aef3e1ba5267575dfd67556dbe/oxDNA_analysis_tools-1.0.6-py3-none-any.whl#sha256=30e9c00532d7b9c8d9876edbd22c3ee61093f218989258c609beadb08a8afe19 (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6)
2022-01-06T20:28:00,272   Found link https://files.pythonhosted.org/packages/af/d8/35c3b16794c06b397d557c1bc6b83ab0eda0814de98da27f0628edf2063e/oxDNA_analysis_tools-1.0.6.tar.gz#sha256=cd34e60a12cb017227149fc4eda547bfd1765e6284737ce0c6876eb8194d5382 (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.6
2022-01-06T20:28:00,273   Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/be/a3/cc70bdfe6b395781f50993e434cd72ada4251f9611ab31d0c193b89849b4/oxDNA_analysis_tools-1.0.7-py3-none-any.whl#sha256=e349b207881d5f98299f840374d9e24ece1f2a50a479e36ccad845c7348b2b62 (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6)
2022-01-06T20:28:00,274   Found link https://files.pythonhosted.org/packages/ab/e7/8a95d69c541da3d610ac86d2cc7d736aec8ab9587ffc805d0d4d1eef44ff/oxDNA_analysis_tools-1.0.7.tar.gz#sha256=8a13a4cb9dfa369c54579516d0e9525813454307cda7b4cd80e7bff92e38cc4a (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.7
2022-01-06T20:28:00,275   Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/f1/9a/055e3748453dc8eaea2d12cc2f71dfd5db1a93ab60f0d60f85c9ff0462a6/oxDNA_analysis_tools-1.0.8-py3-none-any.whl#sha256=a2184f818ca2a53ae01c2087e853ef0519d9a04f38f8d1026d7318b72b3a9c4d (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6)
2022-01-06T20:28:00,276   Found link https://files.pythonhosted.org/packages/bf/5d/04a82031d0f96d67578e3b864fdc087e04a637af58ef526bee6009df36cf/oxDNA_analysis_tools-1.0.8.tar.gz#sha256=c0f9ce1b79c645350c553c960e9c10638bea05725d5d0e32c7b501b4078a9a4c (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.8
2022-01-06T20:28:00,277 Fetching project page and analyzing links: https://www.piwheels.org/simple/oxdna-analysis-tools/
2022-01-06T20:28:00,278 Getting page https://www.piwheels.org/simple/oxdna-analysis-tools/
2022-01-06T20:28:00,280 Found index url https://www.piwheels.org/simple
2022-01-06T20:28:00,505   Skipping link: No binaries permitted for oxdna-analysis-tools: https://www.piwheels.org/simple/oxdna-analysis-tools/oxDNA_analysis_tools-1.0.0-py3-none-any.whl#sha256=c32c816be37a1c53155d220930ed097d981c7cbf0fd9b6d794860b226d93faf8 (from https://www.piwheels.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6)
2022-01-06T20:28:00,506   Skipping link: No binaries permitted for oxdna-analysis-tools: https://www.piwheels.org/simple/oxdna-analysis-tools/oxDNA_analysis_tools-1.0.1-py3-none-any.whl#sha256=0ca7f983b569de7181fe802c33f7d89e60f0dd8bc6bdccca11004157f8a15e11 (from https://www.piwheels.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6)
2022-01-06T20:28:00,506   Skipping link: No binaries permitted for oxdna-analysis-tools: https://www.piwheels.org/simple/oxdna-analysis-tools/oxDNA_analysis_tools-1.0.2-py3-none-any.whl#sha256=6a6b25f8023f325afd5a76bc15448dc0e660cf2ef82f3c62ca393db17f5984f6 (from https://www.piwheels.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6)
2022-01-06T20:28:00,507   Skipping link: No binaries permitted for oxdna-analysis-tools: https://www.piwheels.org/simple/oxdna-analysis-tools/oxDNA_analysis_tools-1.0.3-py3-none-any.whl#sha256=2d0c7a78c5b92be1d8835f7975ad51b9fe25a3d8b659711ae20c82f37003f36f (from https://www.piwheels.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6)
2022-01-06T20:28:00,507   Skipping link: No binaries permitted for oxdna-analysis-tools: https://www.piwheels.org/simple/oxdna-analysis-tools/oxDNA_analysis_tools-1.0.4-py3-none-any.whl#sha256=2796c6b7ccce7a9681045e5823ea6d8ba3a768fd645335d6a74f64eb1b183aed (from https://www.piwheels.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6)
2022-01-06T20:28:00,508   Skipping link: No binaries permitted for oxdna-analysis-tools: https://www.piwheels.org/simple/oxdna-analysis-tools/oxDNA_analysis_tools-1.0.5-py3-none-any.whl#sha256=c2ff7807b831fb3247b3d8f7d21229442ed7dc63a97bb8d3d57016ab2d179e84 (from https://www.piwheels.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6)
2022-01-06T20:28:00,508   Skipping link: No binaries permitted for oxdna-analysis-tools: https://www.piwheels.org/simple/oxdna-analysis-tools/oxDNA_analysis_tools-1.0.6-py3-none-any.whl#sha256=3e3793c4a59dd64f86e2733487678785a4e2b86e46e2495f1fb14468b859e683 (from https://www.piwheels.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6)
2022-01-06T20:28:00,509   Skipping link: No binaries permitted for oxdna-analysis-tools: https://www.piwheels.org/simple/oxdna-analysis-tools/oxDNA_analysis_tools-1.0.7-py3-none-any.whl#sha256=f98b328d052365f8a32ef8410ae09dea05cb705511e95eb0393c3f3642c30345 (from https://www.piwheels.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6)
2022-01-06T20:28:00,509 Skipping link: not a file: https://www.piwheels.org/simple/oxdna-analysis-tools/
2022-01-06T20:28:00,510 Skipping link: not a file: https://pypi.org/simple/oxdna-analysis-tools/
2022-01-06T20:28:00,545 Given no hashes to check 1 links for project 'oxdna-analysis-tools': discarding no candidates
2022-01-06T20:28:00,575 Collecting oxdna-analysis-tools==1.0.8
2022-01-06T20:28:00,578   Created temporary directory: /tmp/pip-unpack-54y5ytow
2022-01-06T20:28:00,804   Downloading oxDNA_analysis_tools-1.0.8.tar.gz (103 kB)
2022-01-06T20:28:01,088   Added oxdna-analysis-tools==1.0.8 from https://files.pythonhosted.org/packages/bf/5d/04a82031d0f96d67578e3b864fdc087e04a637af58ef526bee6009df36cf/oxDNA_analysis_tools-1.0.8.tar.gz#sha256=c0f9ce1b79c645350c553c960e9c10638bea05725d5d0e32c7b501b4078a9a4c to build tracker '/tmp/pip-req-tracker-c6a_m0jv'
2022-01-06T20:28:01,097   Created temporary directory: /tmp/pip-build-env-kx91xus2
2022-01-06T20:28:01,110   Created temporary directory: /tmp/pip-standalone-pip-rhwj6op3
2022-01-06T20:28:02,836   Installing build dependencies: started
2022-01-06T20:28:02,837   Running command /usr/bin/python3 /tmp/pip-standalone-pip-rhwj6op3/__env_pip__.zip/pip install --ignore-installed --no-user --prefix /tmp/pip-build-env-kx91xus2/overlay --no-warn-script-location -v --no-binary oxdna-analysis-tools --only-binary :none: -i https://pypi.org/simple --extra-index-url https://www.piwheels.org/simple --prefer-binary -- 'setuptools>=42' wheel
2022-01-06T20:28:10,699   Using pip 21.3.1 from /tmp/pip-standalone-pip-rhwj6op3/__env_pip__.zip/pip (python 3.7)
2022-01-06T20:28:11,489   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-01-06T20:28:16,282   Collecting setuptools>=42
2022-01-06T20:28:16,511     Using cached https://www.piwheels.org/simple/setuptools/setuptools-60.3.1-py3-none-any.whl (953 kB)
2022-01-06T20:28:17,243   Collecting wheel
2022-01-06T20:28:17,277     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-01-06T20:28:21,726   Installing collected packages: wheel, setuptools
2022-01-06T20:28:21,987     Creating /tmp/pip-build-env-kx91xus2/overlay/bin
2022-01-06T20:28:21,990     changing mode of /tmp/pip-build-env-kx91xus2/overlay/bin/wheel to 755
2022-01-06T20:28:25,047   Successfully installed setuptools-60.3.1 wheel-0.37.1
2022-01-06T20:28:25,606   Installing build dependencies: finished with status 'done'
2022-01-06T20:28:25,627   Getting requirements to build wheel: started
2022-01-06T20:28:25,628   Running command /usr/bin/python3 /usr/local/lib/python3.7/dist-packages/pip/_vendor/pep517/in_process/_in_process.py get_requires_for_build_wheel /tmp/tmpxdlur7iq
2022-01-06T20:28:27,361   running egg_info
2022-01-06T20:28:27,432   writing manifest file 'src/oxDNA_analysis_tools.egg-info/SOURCES.txt'


2022-01-06T20:28:27,436   ################################################################################

2022-01-06T20:28:27,437   All set up! All scripts in the package can now be run from the command line with

2022-01-06T20:28:27,438       oat <script_name>

2022-01-06T20:28:27,439   importing functions in your own scripts can be done with

2022-01-06T20:28:27,439       from oxDNA_analysis_tools.<file name> import <function>

2022-01-06T20:28:27,440   If you would like to enable autocomplete in Bash, either add

2022-01-06T20:28:27,441       source oat-completion.sh

2022-01-06T20:28:27,442   to your .bashrc or run

2022-01-06T20:28:27,443       sudo cp oat-completion.sh /etc/bash_completion.d/

2022-01-06T20:28:27,443   to make autocompletes available to all users.
2022-01-06T20:28:27,536   Getting requirements to build wheel: finished with status 'done'
2022-01-06T20:28:27,553   Created temporary directory: /tmp/pip-modern-metadata-qo7p_muj
2022-01-06T20:28:27,559   Preparing metadata (pyproject.toml): started
2022-01-06T20:28:27,559   Running command /usr/bin/python3 /usr/local/lib/python3.7/dist-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /tmp/tmpcxnrz52a
2022-01-06T20:28:29,137   running dist_info
2022-01-06T20:28:29,165   creating /tmp/pip-modern-metadata-qo7p_muj/oxDNA_analysis_tools.egg-info
2022-01-06T20:28:29,181   writing manifest file '/tmp/pip-modern-metadata-qo7p_muj/oxDNA_analysis_tools.egg-info/SOURCES.txt'
2022-01-06T20:28:29,218   writing manifest file '/tmp/pip-modern-metadata-qo7p_muj/oxDNA_analysis_tools.egg-info/SOURCES.txt'


2022-01-06T20:28:29,357   ################################################################################

2022-01-06T20:28:29,358   All set up! All scripts in the package can now be run from the command line with

2022-01-06T20:28:29,359       oat <script_name>

2022-01-06T20:28:29,359   importing functions in your own scripts can be done with

2022-01-06T20:28:29,360       from oxDNA_analysis_tools.<file name> import <function>

2022-01-06T20:28:29,361   If you would like to enable autocomplete in Bash, either add

2022-01-06T20:28:29,362       source oat-completion.sh

2022-01-06T20:28:29,363   to your .bashrc or run

2022-01-06T20:28:29,363       sudo cp oat-completion.sh /etc/bash_completion.d/

2022-01-06T20:28:29,364   to make autocompletes available to all users.
2022-01-06T20:28:29,462   Preparing metadata (pyproject.toml): finished with status 'done'
2022-01-06T20:28:29,475   Source in /tmp/pip-wheel-hyo0n5xo/oxdna-analysis-tools_149260d5823f489fa58b4ed5f8e3fff6 has version 1.0.8, which satisfies requirement oxdna-analysis-tools==1.0.8 from https://files.pythonhosted.org/packages/bf/5d/04a82031d0f96d67578e3b864fdc087e04a637af58ef526bee6009df36cf/oxDNA_analysis_tools-1.0.8.tar.gz#sha256=c0f9ce1b79c645350c553c960e9c10638bea05725d5d0e32c7b501b4078a9a4c
2022-01-06T20:28:29,477   Removed oxdna-analysis-tools==1.0.8 from https://files.pythonhosted.org/packages/bf/5d/04a82031d0f96d67578e3b864fdc087e04a637af58ef526bee6009df36cf/oxDNA_analysis_tools-1.0.8.tar.gz#sha256=c0f9ce1b79c645350c553c960e9c10638bea05725d5d0e32c7b501b4078a9a4c from build tracker '/tmp/pip-req-tracker-c6a_m0jv'
2022-01-06T20:28:29,491 Created temporary directory: /tmp/pip-unpack-rte7_lth
2022-01-06T20:28:29,492 Building wheels for collected packages: oxdna-analysis-tools
2022-01-06T20:28:29,500   Created temporary directory: /tmp/pip-wheel-hv8zbcqg
2022-01-06T20:28:29,501   Destination directory: /tmp/pip-wheel-hv8zbcqg
2022-01-06T20:28:29,506   Building wheel for oxdna-analysis-tools (pyproject.toml): started
2022-01-06T20:28:29,507   Running command /usr/bin/python3 /usr/local/lib/python3.7/dist-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmp68kpcyho
2022-01-06T20:28:31,168   running bdist_wheel
2022-01-06T20:28:31,579   running build
2022-01-06T20:28:31,580   running build_py
2022-01-06T20:28:31,595   creating build
2022-01-06T20:28:31,596   creating build/lib
2022-01-06T20:28:31,598   creating build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,601   copying src/oxDNA_analysis_tools/bond_analysis.py -> build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,606   copying src/oxDNA_analysis_tools/compute_mean.py -> build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,611   copying src/oxDNA_analysis_tools/__init__.py -> build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,614   copying src/oxDNA_analysis_tools/duplex_angle_plotter.py -> build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,619   copying src/oxDNA_analysis_tools/superimpose.py -> build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,622   copying src/oxDNA_analysis_tools/pca.py -> build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,627   copying src/oxDNA_analysis_tools/db_to_force.py -> build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,631   copying src/oxDNA_analysis_tools/eRMSD.py -> build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,636   copying src/oxDNA_analysis_tools/align_trajectory.py -> build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,639   copying src/oxDNA_analysis_tools/config.py -> build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,642   copying src/oxDNA_analysis_tools/clustering.py -> build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,646   copying src/oxDNA_analysis_tools/minify.py -> build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,649   copying src/oxDNA_analysis_tools/contact_map.py -> build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,653   copying src/oxDNA_analysis_tools/output_bonds.py -> build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,656   copying src/oxDNA_analysis_tools/backbone_flexibility.py -> build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,660   copying src/oxDNA_analysis_tools/plot_energy.py -> build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,663   copying src/oxDNA_analysis_tools/entry.py -> build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,666   copying src/oxDNA_analysis_tools/anm_parametrize.py -> build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,669   copying src/oxDNA_analysis_tools/centroid.py -> build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,673   copying src/oxDNA_analysis_tools/p_align.py -> build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,676   copying src/oxDNA_analysis_tools/subset_trajectory.py -> build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,679   copying src/oxDNA_analysis_tools/duplex_angle_finder.py -> build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,683   copying src/oxDNA_analysis_tools/distance.py -> build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,687   copying src/oxDNA_analysis_tools/compute_deviations.py -> build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,691   copying src/oxDNA_analysis_tools/multidimensional_scaling_mean.py -> build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,695   copying src/oxDNA_analysis_tools/mean2dat.py -> build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,698   copying src/oxDNA_analysis_tools/generate_force.py -> build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,701   copying src/oxDNA_analysis_tools/forces2pairs.py -> build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,705   copying src/oxDNA_analysis_tools/pca_experimental.py -> build/lib/oxDNA_analysis_tools
2022-01-06T20:28:31,711   creating build/lib/oxDNA_analysis_tools/UTILS
2022-01-06T20:28:31,712   copying src/oxDNA_analysis_tools/UTILS/base.py -> build/lib/oxDNA_analysis_tools/UTILS
2022-01-06T20:28:31,720   copying src/oxDNA_analysis_tools/UTILS/__init__.py -> build/lib/oxDNA_analysis_tools/UTILS
2022-01-06T20:28:31,722   copying src/oxDNA_analysis_tools/UTILS/parallelize_erik_onefile.py -> build/lib/oxDNA_analysis_tools/UTILS
2022-01-06T20:28:31,725   copying src/oxDNA_analysis_tools/UTILS/parallelize_lorenzo_multifile.py -> build/lib/oxDNA_analysis_tools/UTILS
2022-01-06T20:28:31,729   copying src/oxDNA_analysis_tools/UTILS/base_array.py -> build/lib/oxDNA_analysis_tools/UTILS
2022-01-06T20:28:31,732   copying src/oxDNA_analysis_tools/UTILS/parallelize_lorenzo_onefile.py -> build/lib/oxDNA_analysis_tools/UTILS
2022-01-06T20:28:31,735   copying src/oxDNA_analysis_tools/UTILS/geom.py -> build/lib/oxDNA_analysis_tools/UTILS
2022-01-06T20:28:31,740   copying src/oxDNA_analysis_tools/UTILS/parallelize_erik_multifile.py -> build/lib/oxDNA_analysis_tools/UTILS
2022-01-06T20:28:31,744   copying src/oxDNA_analysis_tools/UTILS/readers.py -> build/lib/oxDNA_analysis_tools/UTILS
2022-01-06T20:28:31,748   copying src/oxDNA_analysis_tools/UTILS/micha_reader.py -> build/lib/oxDNA_analysis_tools/UTILS
2022-01-06T20:28:31,752   copying src/oxDNA_analysis_tools/UTILS/all_vectors.py -> build/lib/oxDNA_analysis_tools/UTILS
2022-01-06T20:28:31,756   creating build/lib/oxDNA_analysis_tools/external_force_utils
2022-01-06T20:28:31,757   copying src/oxDNA_analysis_tools/external_force_utils/exclude_force.py -> build/lib/oxDNA_analysis_tools/external_force_utils
2022-01-06T20:28:31,761   copying src/oxDNA_analysis_tools/external_force_utils/__init__.py -> build/lib/oxDNA_analysis_tools/external_force_utils
2022-01-06T20:28:31,763   copying src/oxDNA_analysis_tools/external_force_utils/force_reader.py -> build/lib/oxDNA_analysis_tools/external_force_utils
2022-01-06T20:28:31,766   copying src/oxDNA_analysis_tools/external_force_utils/forces.py -> build/lib/oxDNA_analysis_tools/external_force_utils
2022-01-06T20:28:31,769   running egg_info
2022-01-06T20:28:31,837   writing manifest file 'src/oxDNA_analysis_tools.egg-info/SOURCES.txt'
2022-01-06T20:28:31,842   copying src/oxDNA_analysis_tools/UTILS/model.h -> build/lib/oxDNA_analysis_tools/UTILS
2022-01-06T20:28:31,846   copying src/oxDNA_analysis_tools/UTILS/rna_model.h -> build/lib/oxDNA_analysis_tools/UTILS
2022-01-06T20:28:31,870   running install
2022-01-06T20:28:31,876   running install_lib
2022-01-06T20:28:31,883   creating build/bdist.linux-armv7l
2022-01-06T20:28:31,883   creating build/bdist.linux-armv7l/wheel
2022-01-06T20:28:31,888   creating build/bdist.linux-armv7l/wheel/oxDNA_analysis_tools
2022-01-06T20:28:31,899   creating build/bdist.linux-armv7l/wheel/oxDNA_analysis_tools/UTILS
2022-01-06T20:28:32,033   creating build/bdist.linux-armv7l/wheel/oxDNA_analysis_tools/external_force_utils
2022-01-06T20:28:32,056   running install_egg_info
2022-01-06T20:28:32,070   Copying src/oxDNA_analysis_tools.egg-info to build/bdist.linux-armv7l/wheel/oxDNA_analysis_tools-1.0.8-py3.7.egg-info
2022-01-06T20:28:32,093   running install_scripts


2022-01-06T20:28:32,502   ################################################################################

2022-01-06T20:28:32,503   All set up! All scripts in the package can now be run from the command line with

2022-01-06T20:28:32,504       oat <script_name>

2022-01-06T20:28:32,504   importing functions in your own scripts can be done with

2022-01-06T20:28:32,505       from oxDNA_analysis_tools.<file name> import <function>

2022-01-06T20:28:32,505   If you would like to enable autocomplete in Bash, either add

2022-01-06T20:28:32,506       source oat-completion.sh

2022-01-06T20:28:32,506   to your .bashrc or run

2022-01-06T20:28:32,507       sudo cp oat-completion.sh /etc/bash_completion.d/

2022-01-06T20:28:32,508   to make autocompletes available to all users.
2022-01-06T20:28:32,640   Building wheel for oxdna-analysis-tools (pyproject.toml): finished with status 'done'
2022-01-06T20:28:32,656   Created wheel for oxdna-analysis-tools: filename=oxDNA_analysis_tools-1.0.8-py3-none-any.whl size=129853 sha256=1283ef9ec8cf833ed1d09f9d032d3d445f65ffd94c9e96836bc093450f0657e8
2022-01-06T20:28:32,656   Stored in directory: /tmp/pip-ephem-wheel-cache-iqkxjw0p/wheels/28/7b/b7/4c0219a9c995bf04f9e6bf9f1cdfc1160244b0f89f24c15451
2022-01-06T20:28:32,684 Successfully built oxdna-analysis-tools
2022-01-06T20:28:32,700 Removed build tracker: '/tmp/pip-req-tracker-c6a_m0jv'