2022-01-11T17:04:14,654 Created temporary directory: /tmp/pip-ephem-wheel-cache-dr8x41jo 2022-01-11T17:04:14,660 Created temporary directory: /tmp/pip-req-tracker-7tmybd9y 2022-01-11T17:04:14,661 Initialized build tracking at /tmp/pip-req-tracker-7tmybd9y 2022-01-11T17:04:14,661 Created build tracker: /tmp/pip-req-tracker-7tmybd9y 2022-01-11T17:04:14,662 Entered build tracker: /tmp/pip-req-tracker-7tmybd9y 2022-01-11T17:04:14,663 Created temporary directory: /tmp/pip-wheel-15kdu26e 2022-01-11T17:04:14,733 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-01-11T17:04:14,737 2 location(s) to search for versions of pysap-etomo: 2022-01-11T17:04:14,737 * https://pypi.org/simple/pysap-etomo/ 2022-01-11T17:04:14,737 * https://www.piwheels.org/simple/pysap-etomo/ 2022-01-11T17:04:14,737 Fetching project page and analyzing links: https://pypi.org/simple/pysap-etomo/ 2022-01-11T17:04:14,740 Getting page https://pypi.org/simple/pysap-etomo/ 2022-01-11T17:04:14,744 Found index url https://pypi.org/simple 2022-01-11T17:04:15,094 Found link https://files.pythonhosted.org/packages/95/0b/d5e3f427e1700ff6404c6bd2a10b52eedf4b768460bae287badb3746983f/pysap-etomo-0.0.1.tar.gz#sha256=de299eb596f729d89dce065bf90031fe1e7f1e0d6ee2db60bf7611c0742112f6 (from https://pypi.org/simple/pysap-etomo/), version: 0.0.1 2022-01-11T17:04:15,095 Skipping link: No binaries permitted for pysap-etomo: https://files.pythonhosted.org/packages/2f/2c/545f7f7b312b2d6d195ba121785593268f06455387be880a30919748d6a4/pysap_etomo-0.0.1-py3-none-any.whl#sha256=2505eada22ae853539489d646755f908f5878f0fd940841e21e43afdf09286ee (from https://pypi.org/simple/pysap-etomo/) 2022-01-11T17:04:15,096 Fetching project page and analyzing links: https://www.piwheels.org/simple/pysap-etomo/ 2022-01-11T17:04:15,096 Getting page https://www.piwheels.org/simple/pysap-etomo/ 2022-01-11T17:04:15,099 Found index url https://www.piwheels.org/simple 2022-01-11T17:04:15,335 Given no hashes to check 1 links for project 'pysap-etomo': discarding no candidates 2022-01-11T17:04:15,368 Collecting pysap-etomo==0.0.1 2022-01-11T17:04:15,371 Created temporary directory: /tmp/pip-unpack-uz588lxr 2022-01-11T17:04:15,595 Downloading pysap-etomo-0.0.1.tar.gz (28 kB) 2022-01-11T17:04:15,858 Added pysap-etomo==0.0.1 from https://files.pythonhosted.org/packages/95/0b/d5e3f427e1700ff6404c6bd2a10b52eedf4b768460bae287badb3746983f/pysap-etomo-0.0.1.tar.gz#sha256=de299eb596f729d89dce065bf90031fe1e7f1e0d6ee2db60bf7611c0742112f6 to build tracker '/tmp/pip-req-tracker-7tmybd9y' 2022-01-11T17:04:15,860 Running setup.py (path:/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py) egg_info for package pysap-etomo 2022-01-11T17:04:15,861 Created temporary directory: /tmp/pip-pip-egg-info-2tq7ftoq 2022-01-11T17:04:15,862 Running command python setup.py egg_info 2022-01-11T17:04:19,608 WARNING: pip is being invoked by an old script wrapper. This will fail in a future version of pip. 2022-01-11T17:04:19,609 Please see https://github.com/pypa/pip/issues/5599 for advice on fixing the underlying issue. 2022-01-11T17:04:19,610 To avoid this problem you can invoke Python with '-m pip' instead of running pip directly. 2022-01-11T17:04:19,610 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2022-01-11T17:04:20,006 Defaulting to user installation because normal site-packages is not writeable 2022-01-11T17:04:20,655 Requirement already satisfied: numpy>=1.16.4 in /usr/local/lib/python3.5/dist-packages (1.18.5) 2022-01-11T17:04:20,662 Requirement already satisfied: cython>=0.27.3 in /usr/local/lib/python3.5/dist-packages (0.29.24) 2022-01-11T17:04:21,355 Collecting pytest-runner 2022-01-11T17:04:21,372 Using cached pytest_runner-5.2-py2.py3-none-any.whl (6.8 kB) 2022-01-11T17:04:24,768 Installing collected packages: pytest-runner 2022-01-11T17:04:25,127 Successfully installed pytest-runner-5.2 2022-01-11T17:04:26,245 running egg_info 2022-01-11T17:04:26,252 creating /tmp/pip-pip-egg-info-2tq7ftoq/pysap_etomo.egg-info 2022-01-11T17:04:26,256 writing requirements to /tmp/pip-pip-egg-info-2tq7ftoq/pysap_etomo.egg-info/requires.txt 2022-01-11T17:04:26,259 writing top-level names to /tmp/pip-pip-egg-info-2tq7ftoq/pysap_etomo.egg-info/top_level.txt 2022-01-11T17:04:26,261 writing /tmp/pip-pip-egg-info-2tq7ftoq/pysap_etomo.egg-info/PKG-INFO 2022-01-11T17:04:26,265 writing dependency_links to /tmp/pip-pip-egg-info-2tq7ftoq/pysap_etomo.egg-info/dependency_links.txt 2022-01-11T17:04:26,268 writing manifest file '/tmp/pip-pip-egg-info-2tq7ftoq/pysap_etomo.egg-info/SOURCES.txt' 2022-01-11T17:04:26,822 --- Logging error --- 2022-01-11T17:04:26,822 Traceback (most recent call last): 2022-01-11T17:04:26,823 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:26,823 msg = self.format(record) 2022-01-11T17:04:26,824 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:26,824 if self.should_color(): 2022-01-11T17:04:26,825 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:26,825 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:26,825 ValueError: underlying buffer has been detached 2022-01-11T17:04:26,826 Call stack: 2022-01-11T17:04:26,826 File "", line 1, in 2022-01-11T17:04:26,827 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:26,827 platforms="OS Independent" 2022-01-11T17:04:26,827 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:26,828 return distutils.core.setup(**attrs) 2022-01-11T17:04:26,828 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:26,828 dist.run_commands() 2022-01-11T17:04:26,829 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:26,829 self.run_command(cmd) 2022-01-11T17:04:26,830 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:26,830 cmd_obj.run() 2022-01-11T17:04:26,830 File "/usr/local/lib/python3.5/dist-packages/setuptools/command/egg_info.py", line 298, in run 2022-01-11T17:04:26,831 self.find_sources() 2022-01-11T17:04:26,832 File "/usr/local/lib/python3.5/dist-packages/setuptools/command/egg_info.py", line 305, in find_sources 2022-01-11T17:04:26,832 mm.run() 2022-01-11T17:04:26,833 File "/usr/local/lib/python3.5/dist-packages/setuptools/command/egg_info.py", line 536, in run 2022-01-11T17:04:26,833 self.add_defaults() 2022-01-11T17:04:26,834 File "/usr/local/lib/python3.5/dist-packages/setuptools/command/egg_info.py", line 572, in add_defaults 2022-01-11T17:04:26,834 sdist.add_defaults(self) 2022-01-11T17:04:26,835 File "/usr/local/lib/python3.5/dist-packages/setuptools/command/py36compat.py", line 32, in add_defaults 2022-01-11T17:04:26,835 self._add_defaults_python() 2022-01-11T17:04:26,836 File "/usr/local/lib/python3.5/dist-packages/setuptools/command/sdist.py", line 109, in _add_defaults_python 2022-01-11T17:04:26,836 build_py = self.get_finalized_command('build_py') 2022-01-11T17:04:26,836 File "/usr/lib/python3.5/distutils/cmd.py", line 298, in get_finalized_command 2022-01-11T17:04:26,837 cmd_obj = self.distribution.get_command_obj(command, create) 2022-01-11T17:04:26,837 File "/usr/lib/python3.5/distutils/dist.py", line 846, in get_command_obj 2022-01-11T17:04:26,838 klass = self.get_command_class(command) 2022-01-11T17:04:26,838 File "/usr/local/lib/python3.5/dist-packages/setuptools/dist.py", line 742, in get_command_class 2022-01-11T17:04:26,839 self.cmdclass[command] = cmdclass = ep.load() 2022-01-11T17:04:26,839 File "/usr/local/lib/python3.5/dist-packages/pkg_resources/__init__.py", line 2447, in load 2022-01-11T17:04:26,839 return self.resolve() 2022-01-11T17:04:26,840 File "/usr/local/lib/python3.5/dist-packages/pkg_resources/__init__.py", line 2453, in resolve 2022-01-11T17:04:26,840 module = __import__(self.module_name, fromlist=['__name__'], level=0) 2022-01-11T17:04:26,841 File "", line 969, in _find_and_load 2022-01-11T17:04:26,842 File "", line 958, in _find_and_load_unlocked 2022-01-11T17:04:26,842 File "", line 673, in _load_unlocked 2022-01-11T17:04:26,842 File "", line 673, in exec_module 2022-01-11T17:04:26,843 File "", line 222, in _call_with_frames_removed 2022-01-11T17:04:26,843 File "/usr/local/lib/python3.5/dist-packages/setuptools/command/build_py.py", line 13, in 2022-01-11T17:04:26,844 from setuptools.lib2to3_ex import Mixin2to3 2022-01-11T17:04:26,844 File "", line 969, in _find_and_load 2022-01-11T17:04:26,845 File "", line 958, in _find_and_load_unlocked 2022-01-11T17:04:26,845 File "", line 673, in _load_unlocked 2022-01-11T17:04:26,846 File "", line 673, in exec_module 2022-01-11T17:04:26,846 File "", line 222, in _call_with_frames_removed 2022-01-11T17:04:26,847 File "/usr/local/lib/python3.5/dist-packages/setuptools/lib2to3_ex.py", line 10, in 2022-01-11T17:04:26,847 from lib2to3.refactor import RefactoringTool, get_fixers_from_package 2022-01-11T17:04:26,848 File "", line 969, in _find_and_load 2022-01-11T17:04:26,848 File "", line 958, in _find_and_load_unlocked 2022-01-11T17:04:26,849 File "", line 673, in _load_unlocked 2022-01-11T17:04:26,849 File "", line 673, in exec_module 2022-01-11T17:04:26,850 File "", line 222, in _call_with_frames_removed 2022-01-11T17:04:26,851 File "/usr/lib/python3.5/lib2to3/refactor.py", line 27, in 2022-01-11T17:04:26,851 from .fixer_util import find_root 2022-01-11T17:04:26,852 File "", line 969, in _find_and_load 2022-01-11T17:04:26,853 File "", line 958, in _find_and_load_unlocked 2022-01-11T17:04:26,853 File "", line 673, in _load_unlocked 2022-01-11T17:04:26,854 File "", line 673, in exec_module 2022-01-11T17:04:26,854 File "", line 222, in _call_with_frames_removed 2022-01-11T17:04:26,855 File "/usr/lib/python3.5/lib2to3/fixer_util.py", line 9, in 2022-01-11T17:04:26,855 from .pygram import python_symbols as syms 2022-01-11T17:04:26,856 File "", line 969, in _find_and_load 2022-01-11T17:04:26,857 File "", line 958, in _find_and_load_unlocked 2022-01-11T17:04:26,857 File "", line 673, in _load_unlocked 2022-01-11T17:04:26,858 File "", line 673, in exec_module 2022-01-11T17:04:26,858 File "", line 222, in _call_with_frames_removed 2022-01-11T17:04:26,859 File "/usr/lib/python3.5/lib2to3/pygram.py", line 32, in 2022-01-11T17:04:26,859 python_grammar = driver.load_grammar(_GRAMMAR_FILE) 2022-01-11T17:04:26,860 File "/usr/lib/python3.5/lib2to3/pgen2/driver.py", line 123, in load_grammar 2022-01-11T17:04:26,861 logger.info("Generating grammar tables from %s", gt) 2022-01-11T17:04:26,861 Message: 'Generating grammar tables from %s' 2022-01-11T17:04:26,862 Arguments: ('/usr/lib/python3.5/lib2to3/Grammar.txt',) 2022-01-11T17:04:26,862 --- Logging error --- 2022-01-11T17:04:26,863 Traceback (most recent call last): 2022-01-11T17:04:26,864 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:26,864 msg = self.format(record) 2022-01-11T17:04:26,864 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:26,865 if self.should_color(): 2022-01-11T17:04:26,866 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:26,866 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:26,867 ValueError: underlying buffer has been detached 2022-01-11T17:04:26,867 Call stack: 2022-01-11T17:04:26,868 File "", line 1, in 2022-01-11T17:04:26,868 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:26,869 platforms="OS Independent" 2022-01-11T17:04:26,869 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:26,870 return distutils.core.setup(**attrs) 2022-01-11T17:04:26,870 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:26,871 dist.run_commands() 2022-01-11T17:04:26,872 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:26,872 self.run_command(cmd) 2022-01-11T17:04:26,873 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:26,873 cmd_obj.run() 2022-01-11T17:04:26,874 File "/usr/local/lib/python3.5/dist-packages/setuptools/command/egg_info.py", line 298, in run 2022-01-11T17:04:26,874 self.find_sources() 2022-01-11T17:04:26,875 File "/usr/local/lib/python3.5/dist-packages/setuptools/command/egg_info.py", line 305, in find_sources 2022-01-11T17:04:26,875 mm.run() 2022-01-11T17:04:26,876 File "/usr/local/lib/python3.5/dist-packages/setuptools/command/egg_info.py", line 536, in run 2022-01-11T17:04:26,877 self.add_defaults() 2022-01-11T17:04:26,877 File "/usr/local/lib/python3.5/dist-packages/setuptools/command/egg_info.py", line 572, in add_defaults 2022-01-11T17:04:26,878 sdist.add_defaults(self) 2022-01-11T17:04:26,878 File "/usr/local/lib/python3.5/dist-packages/setuptools/command/py36compat.py", line 32, in add_defaults 2022-01-11T17:04:26,879 self._add_defaults_python() 2022-01-11T17:04:26,879 File "/usr/local/lib/python3.5/dist-packages/setuptools/command/sdist.py", line 109, in _add_defaults_python 2022-01-11T17:04:26,880 build_py = self.get_finalized_command('build_py') 2022-01-11T17:04:26,880 File "/usr/lib/python3.5/distutils/cmd.py", line 298, in get_finalized_command 2022-01-11T17:04:26,881 cmd_obj = self.distribution.get_command_obj(command, create) 2022-01-11T17:04:26,881 File "/usr/lib/python3.5/distutils/dist.py", line 846, in get_command_obj 2022-01-11T17:04:26,882 klass = self.get_command_class(command) 2022-01-11T17:04:26,882 File "/usr/local/lib/python3.5/dist-packages/setuptools/dist.py", line 742, in get_command_class 2022-01-11T17:04:26,883 self.cmdclass[command] = cmdclass = ep.load() 2022-01-11T17:04:26,883 File "/usr/local/lib/python3.5/dist-packages/pkg_resources/__init__.py", line 2447, in load 2022-01-11T17:04:26,884 return self.resolve() 2022-01-11T17:04:26,884 File "/usr/local/lib/python3.5/dist-packages/pkg_resources/__init__.py", line 2453, in resolve 2022-01-11T17:04:26,885 module = __import__(self.module_name, fromlist=['__name__'], level=0) 2022-01-11T17:04:26,885 File "", line 969, in _find_and_load 2022-01-11T17:04:26,886 File "", line 958, in _find_and_load_unlocked 2022-01-11T17:04:26,887 File "", line 673, in _load_unlocked 2022-01-11T17:04:26,887 File "", line 673, in exec_module 2022-01-11T17:04:26,888 reading manifest file '/tmp/pip-pip-egg-info-2tq7ftoq/pysap_etomo.egg-info/SOURCES.txt' 2022-01-11T17:04:26,888 reading manifest template 'MANIFEST.in' 2022-01-11T17:04:26,898 writing manifest file '/tmp/pip-pip-egg-info-2tq7ftoq/pysap_etomo.egg-info/SOURCES.txt' 2022-01-11T17:04:26,900 File "", line 222, in _call_with_frames_removed 2022-01-11T17:04:26,901 File "/usr/local/lib/python3.5/dist-packages/setuptools/command/build_py.py", line 13, in 2022-01-11T17:04:26,902 from setuptools.lib2to3_ex import Mixin2to3 2022-01-11T17:04:26,903 File "", line 969, in _find_and_load 2022-01-11T17:04:26,903 File "", line 958, in _find_and_load_unlocked 2022-01-11T17:04:26,904 File "", line 673, in _load_unlocked 2022-01-11T17:04:26,904 File "", line 673, in exec_module 2022-01-11T17:04:26,905 File "", line 222, in _call_with_frames_removed 2022-01-11T17:04:26,906 File "/usr/local/lib/python3.5/dist-packages/setuptools/lib2to3_ex.py", line 10, in 2022-01-11T17:04:26,906 from lib2to3.refactor import RefactoringTool, get_fixers_from_package 2022-01-11T17:04:26,907 File "", line 969, in _find_and_load 2022-01-11T17:04:26,907 File "", line 958, in _find_and_load_unlocked 2022-01-11T17:04:26,908 File "", line 673, in _load_unlocked 2022-01-11T17:04:26,909 File "", line 673, in exec_module 2022-01-11T17:04:26,909 File "", line 222, in _call_with_frames_removed 2022-01-11T17:04:26,910 File "/usr/lib/python3.5/lib2to3/refactor.py", line 27, in 2022-01-11T17:04:26,910 from .fixer_util import find_root 2022-01-11T17:04:26,911 File "", line 969, in _find_and_load 2022-01-11T17:04:26,912 File "", line 958, in _find_and_load_unlocked 2022-01-11T17:04:26,912 File "", line 673, in _load_unlocked 2022-01-11T17:04:26,913 File "", line 673, in exec_module 2022-01-11T17:04:26,913 File "", line 222, in _call_with_frames_removed 2022-01-11T17:04:26,914 File "/usr/lib/python3.5/lib2to3/fixer_util.py", line 9, in 2022-01-11T17:04:26,914 from .pygram import python_symbols as syms 2022-01-11T17:04:26,915 File "", line 969, in _find_and_load 2022-01-11T17:04:26,916 File "", line 958, in _find_and_load_unlocked 2022-01-11T17:04:26,916 File "", line 673, in _load_unlocked 2022-01-11T17:04:26,917 File "", line 673, in exec_module 2022-01-11T17:04:26,917 File "", line 222, in _call_with_frames_removed 2022-01-11T17:04:26,918 File "/usr/lib/python3.5/lib2to3/pygram.py", line 39, in 2022-01-11T17:04:26,918 pattern_grammar = driver.load_grammar(_PATTERN_GRAMMAR_FILE) 2022-01-11T17:04:26,919 File "/usr/lib/python3.5/lib2to3/pgen2/driver.py", line 123, in load_grammar 2022-01-11T17:04:26,920 logger.info("Generating grammar tables from %s", gt) 2022-01-11T17:04:26,920 Message: 'Generating grammar tables from %s' 2022-01-11T17:04:26,921 Arguments: ('/usr/lib/python3.5/lib2to3/PatternGrammar.txt',) 2022-01-11T17:04:27,257 Source in /tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28 has version 0.0.1, which satisfies requirement pysap-etomo==0.0.1 from https://files.pythonhosted.org/packages/95/0b/d5e3f427e1700ff6404c6bd2a10b52eedf4b768460bae287badb3746983f/pysap-etomo-0.0.1.tar.gz#sha256=de299eb596f729d89dce065bf90031fe1e7f1e0d6ee2db60bf7611c0742112f6 2022-01-11T17:04:27,258 Removed pysap-etomo==0.0.1 from https://files.pythonhosted.org/packages/95/0b/d5e3f427e1700ff6404c6bd2a10b52eedf4b768460bae287badb3746983f/pysap-etomo-0.0.1.tar.gz#sha256=de299eb596f729d89dce065bf90031fe1e7f1e0d6ee2db60bf7611c0742112f6 from build tracker '/tmp/pip-req-tracker-7tmybd9y' 2022-01-11T17:04:27,266 Created temporary directory: /tmp/pip-unpack-bixkvk0i 2022-01-11T17:04:27,267 Building wheels for collected packages: pysap-etomo 2022-01-11T17:04:27,276 Created temporary directory: /tmp/pip-wheel-gsxc7zvt 2022-01-11T17:04:27,277 Building wheel for pysap-etomo (setup.py): started 2022-01-11T17:04:27,277 Destination directory: /tmp/pip-wheel-gsxc7zvt 2022-01-11T17:04:27,278 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-gsxc7zvt 2022-01-11T17:04:29,834 WARNING: pip is being invoked by an old script wrapper. This will fail in a future version of pip. 2022-01-11T17:04:29,835 Please see https://github.com/pypa/pip/issues/5599 for advice on fixing the underlying issue. 2022-01-11T17:04:29,835 To avoid this problem you can invoke Python with '-m pip' instead of running pip directly. 2022-01-11T17:04:30,954 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2022-01-11T17:04:31,328 Defaulting to user installation because normal site-packages is not writeable 2022-01-11T17:04:31,978 Requirement already satisfied: numpy>=1.16.4 in /usr/local/lib/python3.5/dist-packages (1.18.5) 2022-01-11T17:04:31,985 Requirement already satisfied: cython>=0.27.3 in /usr/local/lib/python3.5/dist-packages (0.29.24) 2022-01-11T17:04:31,990 Requirement already satisfied: pytest-runner in /home/piwheels/.local/lib/python3.5/site-packages (5.2) 2022-01-11T17:04:36,143 running bdist_wheel 2022-01-11T17:04:36,152 running build 2022-01-11T17:04:36,153 running build_py 2022-01-11T17:04:36,229 --- Logging error --- 2022-01-11T17:04:36,233 Traceback (most recent call last): 2022-01-11T17:04:36,234 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:36,235 msg = self.format(record) 2022-01-11T17:04:36,235 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:36,236 if self.should_color(): 2022-01-11T17:04:36,236 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:36,237 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:36,238 ValueError: underlying buffer has been detached 2022-01-11T17:04:36,238 Call stack: 2022-01-11T17:04:36,287 File "", line 1, in 2022-01-11T17:04:36,288 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:36,289 platforms="OS Independent" 2022-01-11T17:04:36,290 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:36,291 return distutils.core.setup(**attrs) 2022-01-11T17:04:36,292 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:36,292 dist.run_commands() 2022-01-11T17:04:36,293 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:36,293 self.run_command(cmd) 2022-01-11T17:04:36,294 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:36,294 cmd_obj.run() 2022-01-11T17:04:36,295 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 179, in run 2022-01-11T17:04:36,295 self.run_command('build') 2022-01-11T17:04:36,295 File "/usr/lib/python3.5/distutils/cmd.py", line 313, in run_command 2022-01-11T17:04:36,296 self.distribution.run_command(command) 2022-01-11T17:04:36,297 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:36,297 cmd_obj.run() 2022-01-11T17:04:36,298 File "/usr/lib/python3.5/distutils/command/build.py", line 135, in run 2022-01-11T17:04:36,298 self.run_command(cmd_name) 2022-01-11T17:04:36,299 File "/usr/lib/python3.5/distutils/cmd.py", line 313, in run_command 2022-01-11T17:04:36,299 self.distribution.run_command(command) 2022-01-11T17:04:36,300 File "/usr/lib/python3.5/distutils/dist.py", line 972, in run_command 2022-01-11T17:04:36,300 cmd_obj = self.get_command_obj(command) 2022-01-11T17:04:36,301 File "/usr/lib/python3.5/distutils/dist.py", line 846, in get_command_obj 2022-01-11T17:04:36,301 klass = self.get_command_class(command) 2022-01-11T17:04:36,302 File "/usr/local/lib/python3.5/dist-packages/setuptools/dist.py", line 742, in get_command_class 2022-01-11T17:04:36,302 self.cmdclass[command] = cmdclass = ep.load() 2022-01-11T17:04:36,303 File "/usr/local/lib/python3.5/dist-packages/pkg_resources/__init__.py", line 2447, in load 2022-01-11T17:04:36,303 return self.resolve() 2022-01-11T17:04:36,304 File "/usr/local/lib/python3.5/dist-packages/pkg_resources/__init__.py", line 2453, in resolve 2022-01-11T17:04:36,304 module = __import__(self.module_name, fromlist=['__name__'], level=0) 2022-01-11T17:04:36,305 File "", line 969, in _find_and_load 2022-01-11T17:04:36,305 File "", line 958, in _find_and_load_unlocked 2022-01-11T17:04:36,306 File "", line 673, in _load_unlocked 2022-01-11T17:04:36,306 File "", line 673, in exec_module 2022-01-11T17:04:36,307 File "", line 222, in _call_with_frames_removed 2022-01-11T17:04:36,307 File "/usr/local/lib/python3.5/dist-packages/setuptools/command/build_py.py", line 13, in 2022-01-11T17:04:36,308 from setuptools.lib2to3_ex import Mixin2to3 2022-01-11T17:04:36,308 File "", line 969, in _find_and_load 2022-01-11T17:04:36,308 File "", line 958, in _find_and_load_unlocked 2022-01-11T17:04:36,309 File "", line 673, in _load_unlocked 2022-01-11T17:04:36,309 File "", line 673, in exec_module 2022-01-11T17:04:36,310 File "", line 222, in _call_with_frames_removed 2022-01-11T17:04:36,310 File "/usr/local/lib/python3.5/dist-packages/setuptools/lib2to3_ex.py", line 10, in 2022-01-11T17:04:36,311 from lib2to3.refactor import RefactoringTool, get_fixers_from_package 2022-01-11T17:04:36,311 File "", line 969, in _find_and_load 2022-01-11T17:04:36,311 File "", line 958, in _find_and_load_unlocked 2022-01-11T17:04:36,312 File "", line 673, in _load_unlocked 2022-01-11T17:04:36,312 File "", line 673, in exec_module 2022-01-11T17:04:36,313 File "", line 222, in _call_with_frames_removed 2022-01-11T17:04:36,313 File "/usr/lib/python3.5/lib2to3/refactor.py", line 27, in 2022-01-11T17:04:36,314 from .fixer_util import find_root 2022-01-11T17:04:36,314 File "", line 969, in _find_and_load 2022-01-11T17:04:36,315 File "", line 958, in _find_and_load_unlocked 2022-01-11T17:04:36,315 File "", line 673, in _load_unlocked 2022-01-11T17:04:36,316 File "", line 673, in exec_module 2022-01-11T17:04:36,316 File "", line 222, in _call_with_frames_removed 2022-01-11T17:04:36,317 File "/usr/lib/python3.5/lib2to3/fixer_util.py", line 9, in 2022-01-11T17:04:36,317 from .pygram import python_symbols as syms 2022-01-11T17:04:36,318 File "", line 969, in _find_and_load 2022-01-11T17:04:36,318 File "", line 958, in _find_and_load_unlocked 2022-01-11T17:04:36,319 File "", line 673, in _load_unlocked 2022-01-11T17:04:36,319 File "", line 673, in exec_module 2022-01-11T17:04:36,319 File "", line 222, in _call_with_frames_removed 2022-01-11T17:04:36,320 File "/usr/lib/python3.5/lib2to3/pygram.py", line 32, in 2022-01-11T17:04:36,320 python_grammar = driver.load_grammar(_GRAMMAR_FILE) 2022-01-11T17:04:36,321 File "/usr/lib/python3.5/lib2to3/pgen2/driver.py", line 123, in load_grammar 2022-01-11T17:04:36,321 logger.info("Generating grammar tables from %s", gt) 2022-01-11T17:04:36,322 Message: 'Generating grammar tables from %s' 2022-01-11T17:04:36,322 Arguments: ('/usr/lib/python3.5/lib2to3/Grammar.txt',) 2022-01-11T17:04:36,602 --- Logging error --- 2022-01-11T17:04:36,603 Traceback (most recent call last): 2022-01-11T17:04:36,604 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:36,604 msg = self.format(record) 2022-01-11T17:04:36,604 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:36,605 if self.should_color(): 2022-01-11T17:04:36,606 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:36,606 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:36,606 ValueError: underlying buffer has been detached 2022-01-11T17:04:36,607 Call stack: 2022-01-11T17:04:36,607 File "", line 1, in 2022-01-11T17:04:36,608 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:36,608 platforms="OS Independent" 2022-01-11T17:04:36,609 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:36,609 return distutils.core.setup(**attrs) 2022-01-11T17:04:36,610 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:36,610 dist.run_commands() 2022-01-11T17:04:36,611 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:36,611 self.run_command(cmd) 2022-01-11T17:04:36,612 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:36,612 cmd_obj.run() 2022-01-11T17:04:36,613 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 179, in run 2022-01-11T17:04:36,613 self.run_command('build') 2022-01-11T17:04:36,614 File "/usr/lib/python3.5/distutils/cmd.py", line 313, in run_command 2022-01-11T17:04:36,614 self.distribution.run_command(command) 2022-01-11T17:04:36,615 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:36,615 cmd_obj.run() 2022-01-11T17:04:36,615 File "/usr/lib/python3.5/distutils/command/build.py", line 135, in run 2022-01-11T17:04:36,616 self.run_command(cmd_name) 2022-01-11T17:04:36,616 File "/usr/lib/python3.5/distutils/cmd.py", line 313, in run_command 2022-01-11T17:04:36,617 self.distribution.run_command(command) 2022-01-11T17:04:36,617 File "/usr/lib/python3.5/distutils/dist.py", line 972, in run_command 2022-01-11T17:04:36,618 cmd_obj = self.get_command_obj(command) 2022-01-11T17:04:36,618 File "/usr/lib/python3.5/distutils/dist.py", line 846, in get_command_obj 2022-01-11T17:04:36,619 klass = self.get_command_class(command) 2022-01-11T17:04:36,619 File "/usr/local/lib/python3.5/dist-packages/setuptools/dist.py", line 742, in get_command_class 2022-01-11T17:04:36,619 self.cmdclass[command] = cmdclass = ep.load() 2022-01-11T17:04:36,620 File "/usr/local/lib/python3.5/dist-packages/pkg_resources/__init__.py", line 2447, in load 2022-01-11T17:04:36,620 return self.resolve() 2022-01-11T17:04:36,621 File "/usr/local/lib/python3.5/dist-packages/pkg_resources/__init__.py", line 2453, in resolve 2022-01-11T17:04:36,621 module = __import__(self.module_name, fromlist=['__name__'], level=0) 2022-01-11T17:04:36,622 File "", line 969, in _find_and_load 2022-01-11T17:04:36,622 File "", line 958, in _find_and_load_unlocked 2022-01-11T17:04:36,623 File "", line 673, in _load_unlocked 2022-01-11T17:04:36,624 File "", line 673, in exec_module 2022-01-11T17:04:36,624 File "", line 222, in _call_with_frames_removed 2022-01-11T17:04:36,625 File "/usr/local/lib/python3.5/dist-packages/setuptools/command/build_py.py", line 13, in 2022-01-11T17:04:36,625 from setuptools.lib2to3_ex import Mixin2to3 2022-01-11T17:04:36,626 File "", line 969, in _find_and_load 2022-01-11T17:04:36,626 File "", line 958, in _find_and_load_unlocked 2022-01-11T17:04:36,627 File "", line 673, in _load_unlocked 2022-01-11T17:04:36,627 File "", line 673, in exec_module 2022-01-11T17:04:36,628 File "", line 222, in _call_with_frames_removed 2022-01-11T17:04:36,629 File "/usr/local/lib/python3.5/dist-packages/setuptools/lib2to3_ex.py", line 10, in 2022-01-11T17:04:36,629 from lib2to3.refactor import RefactoringTool, get_fixers_from_package 2022-01-11T17:04:36,630 File "", line 969, in _find_and_load 2022-01-11T17:04:36,630 File "", line 958, in _find_and_load_unlocked 2022-01-11T17:04:36,631 File "", line 673, in _load_unlocked 2022-01-11T17:04:36,632 File "", line 673, in exec_module 2022-01-11T17:04:36,632 File "", line 222, in _call_with_frames_removed 2022-01-11T17:04:36,633 File "/usr/lib/python3.5/lib2to3/refactor.py", line 27, in 2022-01-11T17:04:36,633 from .fixer_util import find_root 2022-01-11T17:04:36,634 File "", line 969, in _find_and_load 2022-01-11T17:04:36,634 File "", line 958, in _find_and_load_unlocked 2022-01-11T17:04:36,635 File "", line 673, in _load_unlocked 2022-01-11T17:04:36,636 File "", line 673, in exec_module 2022-01-11T17:04:36,636 File "", line 222, in _call_with_frames_removed 2022-01-11T17:04:36,637 File "/usr/lib/python3.5/lib2to3/fixer_util.py", line 9, in 2022-01-11T17:04:36,637 from .pygram import python_symbols as syms 2022-01-11T17:04:36,638 File "", line 969, in _find_and_load 2022-01-11T17:04:36,639 File "", line 958, in _find_and_load_unlocked 2022-01-11T17:04:36,639 File "", line 673, in _load_unlocked 2022-01-11T17:04:36,640 File "", line 673, in exec_module 2022-01-11T17:04:36,640 File "", line 222, in _call_with_frames_removed 2022-01-11T17:04:36,641 File "/usr/lib/python3.5/lib2to3/pygram.py", line 39, in 2022-01-11T17:04:36,642 pattern_grammar = driver.load_grammar(_PATTERN_GRAMMAR_FILE) 2022-01-11T17:04:36,642 File "/usr/lib/python3.5/lib2to3/pgen2/driver.py", line 123, in load_grammar 2022-01-11T17:04:36,643 logger.info("Generating grammar tables from %s", gt) 2022-01-11T17:04:36,643 Message: 'Generating grammar tables from %s' 2022-01-11T17:04:36,644 Arguments: ('/usr/lib/python3.5/lib2to3/PatternGrammar.txt',) 2022-01-11T17:04:36,644 creating build 2022-01-11T17:04:36,645 creating build/lib 2022-01-11T17:04:36,646 creating build/lib/etomo 2022-01-11T17:04:36,647 copying etomo/info.py -> build/lib/etomo 2022-01-11T17:04:36,652 copying etomo/__init__.py -> build/lib/etomo 2022-01-11T17:04:36,659 creating build/lib/etomo/operators 2022-01-11T17:04:36,660 copying etomo/operators/__init__.py -> build/lib/etomo/operators 2022-01-11T17:04:36,666 creating build/lib/etomo/reconstructors 2022-01-11T17:04:36,668 copying etomo/reconstructors/base.py -> build/lib/etomo/reconstructors 2022-01-11T17:04:36,675 copying etomo/reconstructors/__init__.py -> build/lib/etomo/reconstructors 2022-01-11T17:04:36,680 copying etomo/reconstructors/forwardtomo.py -> build/lib/etomo/reconstructors 2022-01-11T17:04:36,687 creating build/lib/etomo/optimizers 2022-01-11T17:04:36,690 copying etomo/optimizers/__init__.py -> build/lib/etomo/optimizers 2022-01-11T17:04:36,694 copying etomo/optimizers/primal_dual.py -> build/lib/etomo/optimizers 2022-01-11T17:04:36,700 copying etomo/optimizers/forward_backward.py -> build/lib/etomo/optimizers 2022-01-11T17:04:36,706 creating build/lib/etomo/operators/linear 2022-01-11T17:04:36,708 copying etomo/operators/linear/base.py -> build/lib/etomo/operators/linear 2022-01-11T17:04:36,714 copying etomo/operators/linear/__init__.py -> build/lib/etomo/operators/linear 2022-01-11T17:04:36,720 copying etomo/operators/linear/wavelet.py -> build/lib/etomo/operators/linear 2022-01-11T17:04:36,726 copying etomo/operators/linear/utils.py -> build/lib/etomo/operators/linear 2022-01-11T17:04:36,732 copying etomo/operators/linear/HOTV.py -> build/lib/etomo/operators/linear 2022-01-11T17:04:36,738 creating build/lib/etomo/operators/utils 2022-01-11T17:04:36,740 copying etomo/operators/utils/__init__.py -> build/lib/etomo/operators/utils 2022-01-11T17:04:36,745 creating build/lib/etomo/operators/fourier 2022-01-11T17:04:36,747 copying etomo/operators/fourier/__init__.py -> build/lib/etomo/operators/fourier 2022-01-11T17:04:36,751 copying etomo/operators/fourier/fourier.py -> build/lib/etomo/operators/fourier 2022-01-11T17:04:36,756 copying etomo/operators/fourier/utils.py -> build/lib/etomo/operators/fourier 2022-01-11T17:04:36,761 creating build/lib/etomo/operators/gradient 2022-01-11T17:04:36,763 copying etomo/operators/gradient/__init__.py -> build/lib/etomo/operators/gradient 2022-01-11T17:04:36,768 copying etomo/operators/gradient/gradient.py -> build/lib/etomo/operators/gradient 2022-01-11T17:04:36,774 creating build/lib/etomo/operators/radon 2022-01-11T17:04:36,777 copying etomo/operators/radon/radon.py -> build/lib/etomo/operators/radon 2022-01-11T17:04:36,785 copying etomo/operators/radon/__init__.py -> build/lib/etomo/operators/radon 2022-01-11T17:04:36,791 creating build/lib/etomo/optimizers/utils 2022-01-11T17:04:36,793 copying etomo/optimizers/utils/cost.py -> build/lib/etomo/optimizers/utils 2022-01-11T17:04:36,799 copying etomo/optimizers/utils/reweight.py -> build/lib/etomo/optimizers/utils 2022-01-11T17:04:36,803 copying etomo/optimizers/utils/__init__.py -> build/lib/etomo/optimizers/utils 2022-01-11T17:04:36,820 installing to build/bdist.linux-armv7l/wheel 2022-01-11T17:04:36,821 running install 2022-01-11T17:04:36,821 running install_lib 2022-01-11T17:04:36,829 creating build/bdist.linux-armv7l 2022-01-11T17:04:36,830 creating build/bdist.linux-armv7l/wheel 2022-01-11T17:04:36,833 creating build/bdist.linux-armv7l/wheel/etomo 2022-01-11T17:04:36,836 copying build/lib/etomo/info.py -> build/bdist.linux-armv7l/wheel/etomo 2022-01-11T17:04:36,841 creating build/bdist.linux-armv7l/wheel/etomo/operators 2022-01-11T17:04:36,844 creating build/bdist.linux-armv7l/wheel/etomo/operators/linear 2022-01-11T17:04:36,847 copying build/lib/etomo/operators/linear/base.py -> build/bdist.linux-armv7l/wheel/etomo/operators/linear 2022-01-11T17:04:36,851 copying build/lib/etomo/operators/linear/__init__.py -> build/bdist.linux-armv7l/wheel/etomo/operators/linear 2022-01-11T17:04:36,857 copying build/lib/etomo/operators/linear/wavelet.py -> build/bdist.linux-armv7l/wheel/etomo/operators/linear 2022-01-11T17:04:36,863 copying build/lib/etomo/operators/linear/utils.py -> build/bdist.linux-armv7l/wheel/etomo/operators/linear 2022-01-11T17:04:36,869 copying build/lib/etomo/operators/linear/HOTV.py -> build/bdist.linux-armv7l/wheel/etomo/operators/linear 2022-01-11T17:04:36,876 creating build/bdist.linux-armv7l/wheel/etomo/operators/utils 2022-01-11T17:04:36,878 copying build/lib/etomo/operators/utils/__init__.py -> build/bdist.linux-armv7l/wheel/etomo/operators/utils 2022-01-11T17:04:36,883 creating build/bdist.linux-armv7l/wheel/etomo/operators/fourier 2022-01-11T17:04:36,885 copying build/lib/etomo/operators/fourier/__init__.py -> build/bdist.linux-armv7l/wheel/etomo/operators/fourier 2022-01-11T17:04:36,889 copying build/lib/etomo/operators/fourier/fourier.py -> build/bdist.linux-armv7l/wheel/etomo/operators/fourier 2022-01-11T17:04:36,895 copying build/lib/etomo/operators/fourier/utils.py -> build/bdist.linux-armv7l/wheel/etomo/operators/fourier 2022-01-11T17:04:36,901 copying build/lib/etomo/operators/__init__.py -> build/bdist.linux-armv7l/wheel/etomo/operators 2022-01-11T17:04:36,908 creating build/bdist.linux-armv7l/wheel/etomo/operators/gradient 2022-01-11T17:04:36,911 copying build/lib/etomo/operators/gradient/__init__.py -> build/bdist.linux-armv7l/wheel/etomo/operators/gradient 2022-01-11T17:04:36,916 copying build/lib/etomo/operators/gradient/gradient.py -> build/bdist.linux-armv7l/wheel/etomo/operators/gradient 2022-01-11T17:04:36,921 creating build/bdist.linux-armv7l/wheel/etomo/operators/radon 2022-01-11T17:04:36,923 copying build/lib/etomo/operators/radon/radon.py -> build/bdist.linux-armv7l/wheel/etomo/operators/radon 2022-01-11T17:04:36,929 copying build/lib/etomo/operators/radon/__init__.py -> build/bdist.linux-armv7l/wheel/etomo/operators/radon 2022-01-11T17:04:36,932 copying build/lib/etomo/__init__.py -> build/bdist.linux-armv7l/wheel/etomo 2022-01-11T17:04:36,939 creating build/bdist.linux-armv7l/wheel/etomo/reconstructors 2022-01-11T17:04:36,942 copying build/lib/etomo/reconstructors/base.py -> build/bdist.linux-armv7l/wheel/etomo/reconstructors 2022-01-11T17:04:36,949 copying build/lib/etomo/reconstructors/__init__.py -> build/bdist.linux-armv7l/wheel/etomo/reconstructors 2022-01-11T17:04:36,953 copying build/lib/etomo/reconstructors/forwardtomo.py -> build/bdist.linux-armv7l/wheel/etomo/reconstructors 2022-01-11T17:04:36,959 creating build/bdist.linux-armv7l/wheel/etomo/optimizers 2022-01-11T17:04:36,962 creating build/bdist.linux-armv7l/wheel/etomo/optimizers/utils 2022-01-11T17:04:36,964 copying build/lib/etomo/optimizers/utils/cost.py -> build/bdist.linux-armv7l/wheel/etomo/optimizers/utils 2022-01-11T17:04:36,970 copying build/lib/etomo/optimizers/utils/reweight.py -> build/bdist.linux-armv7l/wheel/etomo/optimizers/utils 2022-01-11T17:04:36,974 copying build/lib/etomo/optimizers/utils/__init__.py -> build/bdist.linux-armv7l/wheel/etomo/optimizers/utils 2022-01-11T17:04:36,979 copying build/lib/etomo/optimizers/__init__.py -> build/bdist.linux-armv7l/wheel/etomo/optimizers 2022-01-11T17:04:36,985 copying build/lib/etomo/optimizers/primal_dual.py -> build/bdist.linux-armv7l/wheel/etomo/optimizers 2022-01-11T17:04:36,992 copying build/lib/etomo/optimizers/forward_backward.py -> build/bdist.linux-armv7l/wheel/etomo/optimizers 2022-01-11T17:04:36,997 running install_egg_info 2022-01-11T17:04:37,034 running egg_info 2022-01-11T17:04:37,036 writing top-level names to pysap_etomo.egg-info/top_level.txt 2022-01-11T17:04:37,038 writing pysap_etomo.egg-info/PKG-INFO 2022-01-11T17:04:37,043 writing requirements to pysap_etomo.egg-info/requires.txt 2022-01-11T17:04:37,045 writing dependency_links to pysap_etomo.egg-info/dependency_links.txt 2022-01-11T17:04:37,064 reading manifest file 'pysap_etomo.egg-info/SOURCES.txt' 2022-01-11T17:04:37,069 reading manifest template 'MANIFEST.in' 2022-01-11T17:04:37,080 writing manifest file 'pysap_etomo.egg-info/SOURCES.txt' 2022-01-11T17:04:37,083 Copying pysap_etomo.egg-info to build/bdist.linux-armv7l/wheel/pysap_etomo-0.0.1-py3.5.egg-info 2022-01-11T17:04:37,108 running install_scripts 2022-01-11T17:04:37,230 creating build/bdist.linux-armv7l/wheel/pysap_etomo-0.0.1.dist-info/WHEEL 2022-01-11T17:04:37,296 --- Logging error --- 2022-01-11T17:04:37,297 Traceback (most recent call last): 2022-01-11T17:04:37,297 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,298 msg = self.format(record) 2022-01-11T17:04:37,299 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,299 if self.should_color(): 2022-01-11T17:04:37,300 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,300 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,300 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,301 Call stack: 2022-01-11T17:04:37,317 File "", line 1, in 2022-01-11T17:04:37,318 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,320 platforms="OS Independent" 2022-01-11T17:04:37,321 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,322 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,324 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,325 dist.run_commands() 2022-01-11T17:04:37,326 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,327 self.run_command(cmd) 2022-01-11T17:04:37,328 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,329 cmd_obj.run() 2022-01-11T17:04:37,329 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,330 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,332 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,333 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,333 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 34, in make_wheelfile_inner 2022-01-11T17:04:37,334 log.info("creating '%s' and adding '%s' to it", zip_filename, base_dir) 2022-01-11T17:04:37,334 Message: "creating '%s' and adding '%s' to it" 2022-01-11T17:04:37,335 Arguments: ('/tmp/pip-wheel-gsxc7zvt/pysap_etomo-0.0.1-py3-none-any.whl', '.') 2022-01-11T17:04:37,335 --- Logging error --- 2022-01-11T17:04:37,336 Traceback (most recent call last): 2022-01-11T17:04:37,337 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,337 msg = self.format(record) 2022-01-11T17:04:37,338 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,339 if self.should_color(): 2022-01-11T17:04:37,339 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,340 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,340 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,341 Call stack: 2022-01-11T17:04:37,341 File "", line 1, in 2022-01-11T17:04:37,342 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,343 platforms="OS Independent" 2022-01-11T17:04:37,343 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,344 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,344 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,345 dist.run_commands() 2022-01-11T17:04:37,345 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,346 self.run_command(cmd) 2022-01-11T17:04:37,346 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,347 cmd_obj.run() 2022-01-11T17:04:37,348 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,348 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,349 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,349 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,350 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 72, in make_wheelfile_inner 2022-01-11T17:04:37,350 writefile(path, date_time) 2022-01-11T17:04:37,351 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,352 log.info("adding '%s'" % path) 2022-01-11T17:04:37,352 Message: "adding 'etomo/info.py'" 2022-01-11T17:04:37,353 Arguments: () 2022-01-11T17:04:37,353 --- Logging error --- 2022-01-11T17:04:37,354 Traceback (most recent call last): 2022-01-11T17:04:37,354 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,355 msg = self.format(record) 2022-01-11T17:04:37,355 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,356 if self.should_color(): 2022-01-11T17:04:37,357 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,357 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,358 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,358 Call stack: 2022-01-11T17:04:37,359 File "", line 1, in 2022-01-11T17:04:37,359 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,360 platforms="OS Independent" 2022-01-11T17:04:37,360 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,361 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,361 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,362 dist.run_commands() 2022-01-11T17:04:37,363 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,363 self.run_command(cmd) 2022-01-11T17:04:37,364 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,364 cmd_obj.run() 2022-01-11T17:04:37,364 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,365 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,366 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,366 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,367 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 72, in make_wheelfile_inner 2022-01-11T17:04:37,368 writefile(path, date_time) 2022-01-11T17:04:37,368 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,369 log.info("adding '%s'" % path) 2022-01-11T17:04:37,369 Message: "adding 'etomo/__init__.py'" 2022-01-11T17:04:37,370 Arguments: () 2022-01-11T17:04:37,370 --- Logging error --- 2022-01-11T17:04:37,371 Traceback (most recent call last): 2022-01-11T17:04:37,372 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,372 msg = self.format(record) 2022-01-11T17:04:37,373 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,373 if self.should_color(): 2022-01-11T17:04:37,374 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,374 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,375 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,376 Call stack: 2022-01-11T17:04:37,376 File "", line 1, in 2022-01-11T17:04:37,377 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,377 platforms="OS Independent" 2022-01-11T17:04:37,378 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,378 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,379 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,379 dist.run_commands() 2022-01-11T17:04:37,380 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,380 self.run_command(cmd) 2022-01-11T17:04:37,381 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,382 cmd_obj.run() 2022-01-11T17:04:37,382 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,383 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,383 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,384 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,384 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 72, in make_wheelfile_inner 2022-01-11T17:04:37,385 writefile(path, date_time) 2022-01-11T17:04:37,386 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,386 log.info("adding '%s'" % path) 2022-01-11T17:04:37,387 Message: "adding 'etomo/operators/__init__.py'" 2022-01-11T17:04:37,387 Arguments: () 2022-01-11T17:04:37,388 --- Logging error --- 2022-01-11T17:04:37,389 Traceback (most recent call last): 2022-01-11T17:04:37,389 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,389 msg = self.format(record) 2022-01-11T17:04:37,390 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,391 if self.should_color(): 2022-01-11T17:04:37,391 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,392 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,393 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,393 Call stack: 2022-01-11T17:04:37,393 File "", line 1, in 2022-01-11T17:04:37,394 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,395 platforms="OS Independent" 2022-01-11T17:04:37,395 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,396 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,397 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,397 dist.run_commands() 2022-01-11T17:04:37,398 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,398 self.run_command(cmd) 2022-01-11T17:04:37,399 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,399 cmd_obj.run() 2022-01-11T17:04:37,400 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,400 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,401 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,402 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,402 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 72, in make_wheelfile_inner 2022-01-11T17:04:37,403 writefile(path, date_time) 2022-01-11T17:04:37,403 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,404 log.info("adding '%s'" % path) 2022-01-11T17:04:37,404 Message: "adding 'etomo/operators/linear/base.py'" 2022-01-11T17:04:37,405 Arguments: () 2022-01-11T17:04:37,405 --- Logging error --- 2022-01-11T17:04:37,406 Traceback (most recent call last): 2022-01-11T17:04:37,407 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,407 msg = self.format(record) 2022-01-11T17:04:37,408 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,408 if self.should_color(): 2022-01-11T17:04:37,409 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,409 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,410 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,410 Call stack: 2022-01-11T17:04:37,411 File "", line 1, in 2022-01-11T17:04:37,412 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,412 platforms="OS Independent" 2022-01-11T17:04:37,413 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,413 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,414 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,414 dist.run_commands() 2022-01-11T17:04:37,415 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,415 self.run_command(cmd) 2022-01-11T17:04:37,416 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,417 cmd_obj.run() 2022-01-11T17:04:37,417 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,418 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,418 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,419 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,419 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 72, in make_wheelfile_inner 2022-01-11T17:04:37,420 writefile(path, date_time) 2022-01-11T17:04:37,420 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,421 log.info("adding '%s'" % path) 2022-01-11T17:04:37,422 Message: "adding 'etomo/operators/linear/__init__.py'" 2022-01-11T17:04:37,422 Arguments: () 2022-01-11T17:04:37,423 --- Logging error --- 2022-01-11T17:04:37,423 Traceback (most recent call last): 2022-01-11T17:04:37,424 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,424 msg = self.format(record) 2022-01-11T17:04:37,425 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,426 if self.should_color(): 2022-01-11T17:04:37,426 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,427 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,427 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,428 Call stack: 2022-01-11T17:04:37,428 File "", line 1, in 2022-01-11T17:04:37,429 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,429 platforms="OS Independent" 2022-01-11T17:04:37,430 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,430 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,431 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,432 dist.run_commands() 2022-01-11T17:04:37,432 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,433 self.run_command(cmd) 2022-01-11T17:04:37,433 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,434 cmd_obj.run() 2022-01-11T17:04:37,434 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,435 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,435 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,436 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,437 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 72, in make_wheelfile_inner 2022-01-11T17:04:37,437 writefile(path, date_time) 2022-01-11T17:04:37,438 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,438 log.info("adding '%s'" % path) 2022-01-11T17:04:37,439 Message: "adding 'etomo/operators/linear/wavelet.py'" 2022-01-11T17:04:37,439 Arguments: () 2022-01-11T17:04:37,440 --- Logging error --- 2022-01-11T17:04:37,440 Traceback (most recent call last): 2022-01-11T17:04:37,441 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,442 msg = self.format(record) 2022-01-11T17:04:37,442 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,443 if self.should_color(): 2022-01-11T17:04:37,443 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,444 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,444 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,445 Call stack: 2022-01-11T17:04:37,445 File "", line 1, in 2022-01-11T17:04:37,446 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,447 platforms="OS Independent" 2022-01-11T17:04:37,447 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,448 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,448 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,449 dist.run_commands() 2022-01-11T17:04:37,449 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,450 self.run_command(cmd) 2022-01-11T17:04:37,450 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,451 cmd_obj.run() 2022-01-11T17:04:37,452 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,452 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,453 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,453 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,454 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 72, in make_wheelfile_inner 2022-01-11T17:04:37,454 writefile(path, date_time) 2022-01-11T17:04:37,455 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,456 log.info("adding '%s'" % path) 2022-01-11T17:04:37,456 Message: "adding 'etomo/operators/linear/utils.py'" 2022-01-11T17:04:37,457 Arguments: () 2022-01-11T17:04:37,457 --- Logging error --- 2022-01-11T17:04:37,458 Traceback (most recent call last): 2022-01-11T17:04:37,458 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,459 msg = self.format(record) 2022-01-11T17:04:37,460 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,460 if self.should_color(): 2022-01-11T17:04:37,461 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,461 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,462 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,462 Call stack: 2022-01-11T17:04:37,463 File "", line 1, in 2022-01-11T17:04:37,463 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,464 platforms="OS Independent" 2022-01-11T17:04:37,464 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,465 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,465 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,466 dist.run_commands() 2022-01-11T17:04:37,466 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,467 self.run_command(cmd) 2022-01-11T17:04:37,468 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,468 cmd_obj.run() 2022-01-11T17:04:37,469 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,469 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,470 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,470 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,471 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 72, in make_wheelfile_inner 2022-01-11T17:04:37,472 writefile(path, date_time) 2022-01-11T17:04:37,472 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,473 log.info("adding '%s'" % path) 2022-01-11T17:04:37,473 Message: "adding 'etomo/operators/linear/HOTV.py'" 2022-01-11T17:04:37,474 Arguments: () 2022-01-11T17:04:37,474 --- Logging error --- 2022-01-11T17:04:37,475 Traceback (most recent call last): 2022-01-11T17:04:37,475 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,476 msg = self.format(record) 2022-01-11T17:04:37,476 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,477 if self.should_color(): 2022-01-11T17:04:37,478 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,479 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,479 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,480 Call stack: 2022-01-11T17:04:37,481 File "", line 1, in 2022-01-11T17:04:37,481 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,482 platforms="OS Independent" 2022-01-11T17:04:37,483 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,484 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,484 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,485 dist.run_commands() 2022-01-11T17:04:37,486 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,487 self.run_command(cmd) 2022-01-11T17:04:37,487 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,488 cmd_obj.run() 2022-01-11T17:04:37,489 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,489 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,490 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,491 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,492 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 72, in make_wheelfile_inner 2022-01-11T17:04:37,492 writefile(path, date_time) 2022-01-11T17:04:37,493 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,494 log.info("adding '%s'" % path) 2022-01-11T17:04:37,494 Message: "adding 'etomo/operators/utils/__init__.py'" 2022-01-11T17:04:37,495 Arguments: () 2022-01-11T17:04:37,496 --- Logging error --- 2022-01-11T17:04:37,497 Traceback (most recent call last): 2022-01-11T17:04:37,497 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,498 msg = self.format(record) 2022-01-11T17:04:37,499 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,499 if self.should_color(): 2022-01-11T17:04:37,500 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,501 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,502 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,502 Call stack: 2022-01-11T17:04:37,503 File "", line 1, in 2022-01-11T17:04:37,504 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,505 platforms="OS Independent" 2022-01-11T17:04:37,505 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,506 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,507 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,507 dist.run_commands() 2022-01-11T17:04:37,508 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,509 self.run_command(cmd) 2022-01-11T17:04:37,509 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,510 cmd_obj.run() 2022-01-11T17:04:37,511 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,512 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,512 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,513 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,514 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 72, in make_wheelfile_inner 2022-01-11T17:04:37,514 writefile(path, date_time) 2022-01-11T17:04:37,515 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,516 log.info("adding '%s'" % path) 2022-01-11T17:04:37,517 Message: "adding 'etomo/operators/fourier/__init__.py'" 2022-01-11T17:04:37,517 Arguments: () 2022-01-11T17:04:37,518 --- Logging error --- 2022-01-11T17:04:37,518 Traceback (most recent call last): 2022-01-11T17:04:37,519 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,520 msg = self.format(record) 2022-01-11T17:04:37,520 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,521 if self.should_color(): 2022-01-11T17:04:37,522 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,522 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,523 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,523 Call stack: 2022-01-11T17:04:37,524 File "", line 1, in 2022-01-11T17:04:37,524 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,525 platforms="OS Independent" 2022-01-11T17:04:37,526 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,526 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,527 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,527 dist.run_commands() 2022-01-11T17:04:37,528 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,528 self.run_command(cmd) 2022-01-11T17:04:37,529 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,530 cmd_obj.run() 2022-01-11T17:04:37,530 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,531 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,531 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,532 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,533 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 72, in make_wheelfile_inner 2022-01-11T17:04:37,533 writefile(path, date_time) 2022-01-11T17:04:37,534 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,534 log.info("adding '%s'" % path) 2022-01-11T17:04:37,535 Message: "adding 'etomo/operators/fourier/fourier.py'" 2022-01-11T17:04:37,535 Arguments: () 2022-01-11T17:04:37,536 --- Logging error --- 2022-01-11T17:04:37,537 Traceback (most recent call last): 2022-01-11T17:04:37,537 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,538 msg = self.format(record) 2022-01-11T17:04:37,538 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,539 if self.should_color(): 2022-01-11T17:04:37,539 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,540 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,541 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,541 Call stack: 2022-01-11T17:04:37,542 File "", line 1, in 2022-01-11T17:04:37,543 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,543 platforms="OS Independent" 2022-01-11T17:04:37,544 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,544 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,545 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,545 dist.run_commands() 2022-01-11T17:04:37,546 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,547 self.run_command(cmd) 2022-01-11T17:04:37,547 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,548 cmd_obj.run() 2022-01-11T17:04:37,548 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,549 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,549 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,550 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,550 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 72, in make_wheelfile_inner 2022-01-11T17:04:37,551 writefile(path, date_time) 2022-01-11T17:04:37,552 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,552 log.info("adding '%s'" % path) 2022-01-11T17:04:37,553 Message: "adding 'etomo/operators/fourier/utils.py'" 2022-01-11T17:04:37,553 Arguments: () 2022-01-11T17:04:37,554 --- Logging error --- 2022-01-11T17:04:37,554 Traceback (most recent call last): 2022-01-11T17:04:37,555 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,555 msg = self.format(record) 2022-01-11T17:04:37,556 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,556 if self.should_color(): 2022-01-11T17:04:37,557 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,558 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,558 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,559 Call stack: 2022-01-11T17:04:37,559 File "", line 1, in 2022-01-11T17:04:37,560 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,560 platforms="OS Independent" 2022-01-11T17:04:37,561 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,562 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,562 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,563 dist.run_commands() 2022-01-11T17:04:37,563 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,564 self.run_command(cmd) 2022-01-11T17:04:37,564 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,565 cmd_obj.run() 2022-01-11T17:04:37,565 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,566 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,567 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,567 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,568 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 72, in make_wheelfile_inner 2022-01-11T17:04:37,568 writefile(path, date_time) 2022-01-11T17:04:37,569 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,569 log.info("adding '%s'" % path) 2022-01-11T17:04:37,570 Message: "adding 'etomo/operators/gradient/__init__.py'" 2022-01-11T17:04:37,570 Arguments: () 2022-01-11T17:04:37,571 --- Logging error --- 2022-01-11T17:04:37,572 Traceback (most recent call last): 2022-01-11T17:04:37,572 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,573 msg = self.format(record) 2022-01-11T17:04:37,573 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,574 if self.should_color(): 2022-01-11T17:04:37,574 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,575 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,576 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,576 Call stack: 2022-01-11T17:04:37,577 File "", line 1, in 2022-01-11T17:04:37,577 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,578 platforms="OS Independent" 2022-01-11T17:04:37,578 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,579 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,579 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,580 dist.run_commands() 2022-01-11T17:04:37,581 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,581 self.run_command(cmd) 2022-01-11T17:04:37,582 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,582 cmd_obj.run() 2022-01-11T17:04:37,583 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,583 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,584 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,584 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,585 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 72, in make_wheelfile_inner 2022-01-11T17:04:37,586 writefile(path, date_time) 2022-01-11T17:04:37,586 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,587 log.info("adding '%s'" % path) 2022-01-11T17:04:37,587 Message: "adding 'etomo/operators/gradient/gradient.py'" 2022-01-11T17:04:37,588 Arguments: () 2022-01-11T17:04:37,588 --- Logging error --- 2022-01-11T17:04:37,589 Traceback (most recent call last): 2022-01-11T17:04:37,590 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,590 msg = self.format(record) 2022-01-11T17:04:37,591 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,591 if self.should_color(): 2022-01-11T17:04:37,592 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,593 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,593 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,594 Call stack: 2022-01-11T17:04:37,594 File "", line 1, in 2022-01-11T17:04:37,595 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,595 platforms="OS Independent" 2022-01-11T17:04:37,596 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,596 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,597 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,597 dist.run_commands() 2022-01-11T17:04:37,598 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,599 self.run_command(cmd) 2022-01-11T17:04:37,599 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,600 cmd_obj.run() 2022-01-11T17:04:37,600 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,601 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,602 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,602 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,603 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 72, in make_wheelfile_inner 2022-01-11T17:04:37,603 writefile(path, date_time) 2022-01-11T17:04:37,604 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,604 log.info("adding '%s'" % path) 2022-01-11T17:04:37,605 Message: "adding 'etomo/operators/radon/radon.py'" 2022-01-11T17:04:37,606 Arguments: () 2022-01-11T17:04:37,606 --- Logging error --- 2022-01-11T17:04:37,607 Traceback (most recent call last): 2022-01-11T17:04:37,607 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,608 msg = self.format(record) 2022-01-11T17:04:37,608 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,609 if self.should_color(): 2022-01-11T17:04:37,610 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,610 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,611 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,612 Call stack: 2022-01-11T17:04:37,612 File "", line 1, in 2022-01-11T17:04:37,613 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,614 platforms="OS Independent" 2022-01-11T17:04:37,614 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,615 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,616 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,616 dist.run_commands() 2022-01-11T17:04:37,617 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,617 self.run_command(cmd) 2022-01-11T17:04:37,618 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,618 cmd_obj.run() 2022-01-11T17:04:37,619 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,619 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,620 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,621 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,621 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 72, in make_wheelfile_inner 2022-01-11T17:04:37,622 writefile(path, date_time) 2022-01-11T17:04:37,622 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,623 log.info("adding '%s'" % path) 2022-01-11T17:04:37,624 Message: "adding 'etomo/operators/radon/__init__.py'" 2022-01-11T17:04:37,624 Arguments: () 2022-01-11T17:04:37,625 --- Logging error --- 2022-01-11T17:04:37,625 Traceback (most recent call last): 2022-01-11T17:04:37,626 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,626 msg = self.format(record) 2022-01-11T17:04:37,627 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,628 if self.should_color(): 2022-01-11T17:04:37,628 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,629 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,629 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,630 Call stack: 2022-01-11T17:04:37,630 File "", line 1, in 2022-01-11T17:04:37,631 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,632 platforms="OS Independent" 2022-01-11T17:04:37,633 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,634 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,634 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,635 dist.run_commands() 2022-01-11T17:04:37,636 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,636 self.run_command(cmd) 2022-01-11T17:04:37,637 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,638 cmd_obj.run() 2022-01-11T17:04:37,638 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,639 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,639 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,640 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,641 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 72, in make_wheelfile_inner 2022-01-11T17:04:37,641 writefile(path, date_time) 2022-01-11T17:04:37,642 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,642 log.info("adding '%s'" % path) 2022-01-11T17:04:37,643 Message: "adding 'etomo/reconstructors/base.py'" 2022-01-11T17:04:37,643 Arguments: () 2022-01-11T17:04:37,644 --- Logging error --- 2022-01-11T17:04:37,644 Traceback (most recent call last): 2022-01-11T17:04:37,645 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,645 msg = self.format(record) 2022-01-11T17:04:37,646 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,646 if self.should_color(): 2022-01-11T17:04:37,647 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,648 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,648 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,649 Call stack: 2022-01-11T17:04:37,649 File "", line 1, in 2022-01-11T17:04:37,650 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,650 platforms="OS Independent" 2022-01-11T17:04:37,651 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,652 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,653 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,653 dist.run_commands() 2022-01-11T17:04:37,654 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,654 self.run_command(cmd) 2022-01-11T17:04:37,655 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,655 cmd_obj.run() 2022-01-11T17:04:37,656 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,656 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,657 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,658 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,658 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 72, in make_wheelfile_inner 2022-01-11T17:04:37,659 writefile(path, date_time) 2022-01-11T17:04:37,659 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,660 log.info("adding '%s'" % path) 2022-01-11T17:04:37,661 Message: "adding 'etomo/reconstructors/__init__.py'" 2022-01-11T17:04:37,661 Arguments: () 2022-01-11T17:04:37,662 --- Logging error --- 2022-01-11T17:04:37,662 Traceback (most recent call last): 2022-01-11T17:04:37,663 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,663 msg = self.format(record) 2022-01-11T17:04:37,664 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,665 if self.should_color(): 2022-01-11T17:04:37,665 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,666 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,666 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,667 Call stack: 2022-01-11T17:04:37,667 File "", line 1, in 2022-01-11T17:04:37,668 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,668 platforms="OS Independent" 2022-01-11T17:04:37,669 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,670 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,670 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,671 dist.run_commands() 2022-01-11T17:04:37,671 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,672 self.run_command(cmd) 2022-01-11T17:04:37,673 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,673 cmd_obj.run() 2022-01-11T17:04:37,674 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,674 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,675 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,675 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,676 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 72, in make_wheelfile_inner 2022-01-11T17:04:37,676 writefile(path, date_time) 2022-01-11T17:04:37,677 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,677 log.info("adding '%s'" % path) 2022-01-11T17:04:37,678 Message: "adding 'etomo/reconstructors/forwardtomo.py'" 2022-01-11T17:04:37,678 Arguments: () 2022-01-11T17:04:37,679 --- Logging error --- 2022-01-11T17:04:37,679 Traceback (most recent call last): 2022-01-11T17:04:37,680 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,681 msg = self.format(record) 2022-01-11T17:04:37,681 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,682 if self.should_color(): 2022-01-11T17:04:37,682 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,683 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,684 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,684 Call stack: 2022-01-11T17:04:37,685 File "", line 1, in 2022-01-11T17:04:37,685 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,686 platforms="OS Independent" 2022-01-11T17:04:37,687 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,687 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,688 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,689 dist.run_commands() 2022-01-11T17:04:37,689 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,690 self.run_command(cmd) 2022-01-11T17:04:37,690 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,691 cmd_obj.run() 2022-01-11T17:04:37,691 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,692 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,692 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,693 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,694 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 72, in make_wheelfile_inner 2022-01-11T17:04:37,694 writefile(path, date_time) 2022-01-11T17:04:37,695 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,695 log.info("adding '%s'" % path) 2022-01-11T17:04:37,696 Message: "adding 'etomo/optimizers/__init__.py'" 2022-01-11T17:04:37,696 Arguments: () 2022-01-11T17:04:37,697 --- Logging error --- 2022-01-11T17:04:37,697 Traceback (most recent call last): 2022-01-11T17:04:37,698 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,698 msg = self.format(record) 2022-01-11T17:04:37,699 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,699 if self.should_color(): 2022-01-11T17:04:37,700 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,701 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,701 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,702 Call stack: 2022-01-11T17:04:37,702 File "", line 1, in 2022-01-11T17:04:37,703 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,704 platforms="OS Independent" 2022-01-11T17:04:37,704 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,705 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,705 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,706 dist.run_commands() 2022-01-11T17:04:37,706 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,707 self.run_command(cmd) 2022-01-11T17:04:37,708 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,708 cmd_obj.run() 2022-01-11T17:04:37,709 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,709 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,710 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,710 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,711 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 72, in make_wheelfile_inner 2022-01-11T17:04:37,712 writefile(path, date_time) 2022-01-11T17:04:37,712 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,713 log.info("adding '%s'" % path) 2022-01-11T17:04:37,713 Message: "adding 'etomo/optimizers/primal_dual.py'" 2022-01-11T17:04:37,714 Arguments: () 2022-01-11T17:04:37,714 --- Logging error --- 2022-01-11T17:04:37,715 Traceback (most recent call last): 2022-01-11T17:04:37,715 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,716 msg = self.format(record) 2022-01-11T17:04:37,716 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,717 if self.should_color(): 2022-01-11T17:04:37,717 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,718 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,718 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,719 Call stack: 2022-01-11T17:04:37,719 File "", line 1, in 2022-01-11T17:04:37,720 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,720 platforms="OS Independent" 2022-01-11T17:04:37,721 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,722 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,722 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,723 dist.run_commands() 2022-01-11T17:04:37,723 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,724 self.run_command(cmd) 2022-01-11T17:04:37,724 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,725 cmd_obj.run() 2022-01-11T17:04:37,725 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,726 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,726 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,727 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,727 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 72, in make_wheelfile_inner 2022-01-11T17:04:37,728 writefile(path, date_time) 2022-01-11T17:04:37,728 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,729 log.info("adding '%s'" % path) 2022-01-11T17:04:37,729 Message: "adding 'etomo/optimizers/forward_backward.py'" 2022-01-11T17:04:37,730 Arguments: () 2022-01-11T17:04:37,730 --- Logging error --- 2022-01-11T17:04:37,731 Traceback (most recent call last): 2022-01-11T17:04:37,731 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,732 msg = self.format(record) 2022-01-11T17:04:37,733 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,733 if self.should_color(): 2022-01-11T17:04:37,734 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,734 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,735 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,735 Call stack: 2022-01-11T17:04:37,736 File "", line 1, in 2022-01-11T17:04:37,736 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,737 platforms="OS Independent" 2022-01-11T17:04:37,737 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,738 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,738 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,739 dist.run_commands() 2022-01-11T17:04:37,739 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,740 self.run_command(cmd) 2022-01-11T17:04:37,740 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,741 cmd_obj.run() 2022-01-11T17:04:37,741 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,742 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,743 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,743 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,744 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 72, in make_wheelfile_inner 2022-01-11T17:04:37,744 writefile(path, date_time) 2022-01-11T17:04:37,745 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,745 log.info("adding '%s'" % path) 2022-01-11T17:04:37,746 Message: "adding 'etomo/optimizers/utils/cost.py'" 2022-01-11T17:04:37,746 Arguments: () 2022-01-11T17:04:37,747 --- Logging error --- 2022-01-11T17:04:37,747 Traceback (most recent call last): 2022-01-11T17:04:37,748 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,748 msg = self.format(record) 2022-01-11T17:04:37,749 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,749 if self.should_color(): 2022-01-11T17:04:37,750 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,750 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,751 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,752 Call stack: 2022-01-11T17:04:37,752 File "", line 1, in 2022-01-11T17:04:37,753 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,753 platforms="OS Independent" 2022-01-11T17:04:37,754 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,754 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,755 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,755 dist.run_commands() 2022-01-11T17:04:37,756 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,756 self.run_command(cmd) 2022-01-11T17:04:37,757 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,757 cmd_obj.run() 2022-01-11T17:04:37,758 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,758 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,759 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,759 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,760 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 72, in make_wheelfile_inner 2022-01-11T17:04:37,760 writefile(path, date_time) 2022-01-11T17:04:37,761 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,761 log.info("adding '%s'" % path) 2022-01-11T17:04:37,762 Message: "adding 'etomo/optimizers/utils/reweight.py'" 2022-01-11T17:04:37,762 Arguments: () 2022-01-11T17:04:37,763 --- Logging error --- 2022-01-11T17:04:37,763 Traceback (most recent call last): 2022-01-11T17:04:37,764 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,764 msg = self.format(record) 2022-01-11T17:04:37,765 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,765 if self.should_color(): 2022-01-11T17:04:37,766 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,766 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,767 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,767 Call stack: 2022-01-11T17:04:37,768 File "", line 1, in 2022-01-11T17:04:37,768 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,769 platforms="OS Independent" 2022-01-11T17:04:37,769 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,770 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,770 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,771 dist.run_commands() 2022-01-11T17:04:37,772 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,772 self.run_command(cmd) 2022-01-11T17:04:37,773 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,773 cmd_obj.run() 2022-01-11T17:04:37,774 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,774 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,775 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,775 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,776 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 72, in make_wheelfile_inner 2022-01-11T17:04:37,776 writefile(path, date_time) 2022-01-11T17:04:37,777 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,777 log.info("adding '%s'" % path) 2022-01-11T17:04:37,778 Message: "adding 'etomo/optimizers/utils/__init__.py'" 2022-01-11T17:04:37,779 Arguments: () 2022-01-11T17:04:37,779 --- Logging error --- 2022-01-11T17:04:37,780 Traceback (most recent call last): 2022-01-11T17:04:37,780 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,781 msg = self.format(record) 2022-01-11T17:04:37,782 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,782 if self.should_color(): 2022-01-11T17:04:37,783 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,783 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,784 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,785 Call stack: 2022-01-11T17:04:37,785 File "", line 1, in 2022-01-11T17:04:37,786 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,786 platforms="OS Independent" 2022-01-11T17:04:37,787 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,787 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,788 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,789 dist.run_commands() 2022-01-11T17:04:37,789 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,790 self.run_command(cmd) 2022-01-11T17:04:37,790 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,791 cmd_obj.run() 2022-01-11T17:04:37,792 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,792 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,793 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,793 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,794 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 76, in make_wheelfile_inner 2022-01-11T17:04:37,794 writefile(path, date_time) 2022-01-11T17:04:37,795 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,795 log.info("adding '%s'" % path) 2022-01-11T17:04:37,796 Message: "adding 'pysap_etomo-0.0.1.dist-info/DESCRIPTION.rst'" 2022-01-11T17:04:37,796 Arguments: () 2022-01-11T17:04:37,797 --- Logging error --- 2022-01-11T17:04:37,797 Traceback (most recent call last): 2022-01-11T17:04:37,798 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,798 msg = self.format(record) 2022-01-11T17:04:37,799 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,799 if self.should_color(): 2022-01-11T17:04:37,800 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,801 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,801 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,802 Call stack: 2022-01-11T17:04:37,803 File "", line 1, in 2022-01-11T17:04:37,803 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,804 platforms="OS Independent" 2022-01-11T17:04:37,805 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,805 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,806 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,806 dist.run_commands() 2022-01-11T17:04:37,807 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,808 self.run_command(cmd) 2022-01-11T17:04:37,808 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,809 cmd_obj.run() 2022-01-11T17:04:37,809 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,810 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,810 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,811 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,812 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 76, in make_wheelfile_inner 2022-01-11T17:04:37,812 writefile(path, date_time) 2022-01-11T17:04:37,813 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,813 log.info("adding '%s'" % path) 2022-01-11T17:04:37,814 Message: "adding 'pysap_etomo-0.0.1.dist-info/metadata.json'" 2022-01-11T17:04:37,815 Arguments: () 2022-01-11T17:04:37,815 --- Logging error --- 2022-01-11T17:04:37,816 Traceback (most recent call last): 2022-01-11T17:04:37,816 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,817 msg = self.format(record) 2022-01-11T17:04:37,817 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,818 if self.should_color(): 2022-01-11T17:04:37,819 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,819 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,820 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,821 Call stack: 2022-01-11T17:04:37,821 File "", line 1, in 2022-01-11T17:04:37,822 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,822 platforms="OS Independent" 2022-01-11T17:04:37,823 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,824 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,824 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,825 dist.run_commands() 2022-01-11T17:04:37,825 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,826 self.run_command(cmd) 2022-01-11T17:04:37,826 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,827 cmd_obj.run() 2022-01-11T17:04:37,828 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,828 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,829 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,829 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,830 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 76, in make_wheelfile_inner 2022-01-11T17:04:37,830 writefile(path, date_time) 2022-01-11T17:04:37,831 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,832 log.info("adding '%s'" % path) 2022-01-11T17:04:37,832 Message: "adding 'pysap_etomo-0.0.1.dist-info/top_level.txt'" 2022-01-11T17:04:37,833 Arguments: () 2022-01-11T17:04:37,833 --- Logging error --- 2022-01-11T17:04:37,834 Traceback (most recent call last): 2022-01-11T17:04:37,834 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,835 msg = self.format(record) 2022-01-11T17:04:37,835 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,836 if self.should_color(): 2022-01-11T17:04:37,836 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,837 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,837 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,838 Call stack: 2022-01-11T17:04:37,839 File "", line 1, in 2022-01-11T17:04:37,839 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,840 platforms="OS Independent" 2022-01-11T17:04:37,840 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,841 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,842 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,842 dist.run_commands() 2022-01-11T17:04:37,843 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,843 self.run_command(cmd) 2022-01-11T17:04:37,844 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,844 cmd_obj.run() 2022-01-11T17:04:37,845 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,845 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,846 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,846 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,847 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 76, in make_wheelfile_inner 2022-01-11T17:04:37,847 writefile(path, date_time) 2022-01-11T17:04:37,848 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,848 log.info("adding '%s'" % path) 2022-01-11T17:04:37,849 Message: "adding 'pysap_etomo-0.0.1.dist-info/WHEEL'" 2022-01-11T17:04:37,849 Arguments: () 2022-01-11T17:04:37,850 --- Logging error --- 2022-01-11T17:04:37,850 Traceback (most recent call last): 2022-01-11T17:04:37,851 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,852 msg = self.format(record) 2022-01-11T17:04:37,852 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,853 if self.should_color(): 2022-01-11T17:04:37,853 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,854 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,854 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,855 Call stack: 2022-01-11T17:04:37,855 File "", line 1, in 2022-01-11T17:04:37,856 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,856 platforms="OS Independent" 2022-01-11T17:04:37,857 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,857 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,858 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,858 dist.run_commands() 2022-01-11T17:04:37,859 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,859 self.run_command(cmd) 2022-01-11T17:04:37,860 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,860 cmd_obj.run() 2022-01-11T17:04:37,861 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,862 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,862 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,863 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,863 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 76, in make_wheelfile_inner 2022-01-11T17:04:37,864 writefile(path, date_time) 2022-01-11T17:04:37,864 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,865 log.info("adding '%s'" % path) 2022-01-11T17:04:37,866 Message: "adding 'pysap_etomo-0.0.1.dist-info/METADATA'" 2022-01-11T17:04:37,866 Arguments: () 2022-01-11T17:04:37,867 --- Logging error --- 2022-01-11T17:04:37,867 Traceback (most recent call last): 2022-01-11T17:04:37,868 File "/usr/lib/python3.5/logging/__init__.py", line 981, in emit 2022-01-11T17:04:37,868 msg = self.format(record) 2022-01-11T17:04:37,869 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 228, in format 2022-01-11T17:04:37,869 if self.should_color(): 2022-01-11T17:04:37,870 File "/usr/local/lib/python3.5/dist-packages/pip/_internal/utils/logging.py", line 215, in should_color 2022-01-11T17:04:37,870 if hasattr(real_stream, "isatty") and real_stream.isatty(): 2022-01-11T17:04:37,871 ValueError: underlying buffer has been detached 2022-01-11T17:04:37,872 Call stack: 2022-01-11T17:04:37,872 File "", line 1, in 2022-01-11T17:04:37,873 File "/tmp/pip-wheel-15kdu26e/pysap-etomo_3e0d287e4e684dbdb6b955dc20971d28/setup.py", line 58, in 2022-01-11T17:04:37,873 platforms="OS Independent" 2022-01-11T17:04:37,874 File "/usr/local/lib/python3.5/dist-packages/setuptools/__init__.py", line 153, in setup 2022-01-11T17:04:37,874 return distutils.core.setup(**attrs) 2022-01-11T17:04:37,875 File "/usr/lib/python3.5/distutils/core.py", line 148, in setup 2022-01-11T17:04:37,875 dist.run_commands() 2022-01-11T17:04:37,876 File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands 2022-01-11T17:04:37,876 self.run_command(cmd) 2022-01-11T17:04:37,877 File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command 2022-01-11T17:04:37,877 cmd_obj.run() 2022-01-11T17:04:37,878 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 241, in run 2022-01-11T17:04:37,878 wheel_name = archive_wheelfile(pseudoinstall_root, archive_root) 2022-01-11T17:04:37,879 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 22, in archive_wheelfile 2022-01-11T17:04:37,879 return make_wheelfile_inner(base_name) 2022-01-11T17:04:37,880 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 76, in make_wheelfile_inner 2022-01-11T17:04:37,880 writefile(path, date_time) 2022-01-11T17:04:37,881 File "/usr/lib/python3/dist-packages/wheel/archive.py", line 62, in writefile 2022-01-11T17:04:37,882 log.info("adding '%s'" % path) 2022-01-11T17:04:37,882 Message: "adding 'pysap_etomo-0.0.1.dist-info/RECORD'" 2022-01-11T17:04:37,883 Arguments: () 2022-01-11T17:04:37,906 Building wheel for pysap-etomo (setup.py): finished with status 'done' 2022-01-11T17:04:37,911 Created wheel for pysap-etomo: filename=pysap_etomo-0.0.1-py3-none-any.whl size=29301 sha256=ae8a1fa6ba07f5acf812438d042fc8ef431995249835c6f2fdf089f27204b9e5 2022-01-11T17:04:37,912 Stored in directory: /tmp/pip-ephem-wheel-cache-dr8x41jo/wheels/8e/77/60/3de928a2375b03d11d94669fc8ff855d59b614294bbdad4956 2022-01-11T17:04:37,931 Successfully built pysap-etomo 2022-01-11T17:04:37,941 Removed build tracker: '/tmp/pip-req-tracker-7tmybd9y'