2022-01-18T17:23:39,280 Created temporary directory: /tmp/pip-ephem-wheel-cache-46kqjvvp 2022-01-18T17:23:39,286 Created temporary directory: /tmp/pip-req-tracker-z537y4lx 2022-01-18T17:23:39,286 Initialized build tracking at /tmp/pip-req-tracker-z537y4lx 2022-01-18T17:23:39,287 Created build tracker: /tmp/pip-req-tracker-z537y4lx 2022-01-18T17:23:39,287 Entered build tracker: /tmp/pip-req-tracker-z537y4lx 2022-01-18T17:23:39,288 Created temporary directory: /tmp/pip-wheel-rgrtcd63 2022-01-18T17:23:39,356 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-01-18T17:23:39,362 2 location(s) to search for versions of glycopeptidepy: 2022-01-18T17:23:39,362 * https://pypi.org/simple/glycopeptidepy/ 2022-01-18T17:23:39,362 * https://www.piwheels.org/simple/glycopeptidepy/ 2022-01-18T17:23:39,363 Fetching project page and analyzing links: https://pypi.org/simple/glycopeptidepy/ 2022-01-18T17:23:39,364 Getting page https://pypi.org/simple/glycopeptidepy/ 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https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.15-cp35-cp35m-linux_armv7l.whl#sha256=dc6ef47fb777209448555d16d0379766fbe9904e37ed4e037dfed0f8b5c9874b (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-01-18T17:23:39,988 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.9-cp37-cp37m-linux_armv6l.whl#sha256=6ae840262993fd30d3cc9886ab9c084101c73d2fe5ff93f6790e38e23c8c45e8 (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-01-18T17:23:39,989 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.9-cp37-cp37m-linux_armv7l.whl#sha256=6ae840262993fd30d3cc9886ab9c084101c73d2fe5ff93f6790e38e23c8c45e8 (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-01-18T17:23:39,989 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.9-cp39-cp39-linux_armv6l.whl#sha256=0fe3f95737f2249e76bb8a5232177acd2755d76b4e90ee0cd51e81318a5248be (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-01-18T17:23:39,990 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.9-cp39-cp39-linux_armv7l.whl#sha256=0fe3f95737f2249e76bb8a5232177acd2755d76b4e90ee0cd51e81318a5248be (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-01-18T17:23:39,990 Skipping link: not a file: https://www.piwheels.org/simple/glycopeptidepy/ 2022-01-18T17:23:39,991 Skipping link: not a file: https://pypi.org/simple/glycopeptidepy/ 2022-01-18T17:23:40,037 Given no hashes to check 1 links for project 'glycopeptidepy': discarding no candidates 2022-01-18T17:23:40,078 Collecting glycopeptidepy==0.0.14 2022-01-18T17:23:40,081 Created temporary directory: /tmp/pip-unpack-iiq7hp5x 2022-01-18T17:23:40,173 Downloading glycopeptidepy-0.0.14.tar.gz (1.3 MB) 2022-01-18T17:23:42,006 Added glycopeptidepy==0.0.14 from https://files.pythonhosted.org/packages/91/7f/28c2f58d986940fde5a0d002edf4e1bb21bfc61f899a12d1d49b0ce69eb7/glycopeptidepy-0.0.14.tar.gz#sha256=216732ddfd5e2c56f4e85d2606a07f0b53d75db240b9723e9fd032effe93ff36 to build tracker '/tmp/pip-req-tracker-z537y4lx' 2022-01-18T17:23:42,016 Created temporary directory: /tmp/pip-build-env-g6wfwvyp 2022-01-18T17:23:42,036 Created temporary directory: /tmp/pip-standalone-pip-1q1xosel 2022-01-18T17:23:43,805 Installing build dependencies: started 2022-01-18T17:23:43,806 Running command /usr/bin/python3 /tmp/pip-standalone-pip-1q1xosel/__env_pip__.zip/pip install --ignore-installed --no-user --prefix /tmp/pip-build-env-g6wfwvyp/overlay --no-warn-script-location -v --no-binary glycopeptidepy --only-binary :none: -i https://pypi.org/simple --extra-index-url https://www.piwheels.org/simple --prefer-binary -- setuptools wheel Cython glypy 2022-01-18T17:23:52,852 Using pip 21.3.1 from /tmp/pip-standalone-pip-1q1xosel/__env_pip__.zip/pip (python 3.9) 2022-01-18T17:23:53,705 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-01-18T17:23:58,893 Collecting setuptools 2022-01-18T17:23:59,134 Using cached https://www.piwheels.org/simple/setuptools/setuptools-60.5.0-py3-none-any.whl (958 kB) 2022-01-18T17:23:59,879 Collecting wheel 2022-01-18T17:23:59,945 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-01-18T17:24:04,844 Collecting Cython 2022-01-18T17:24:05,801 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.26-cp39-cp39-linux_armv7l.whl (5.0 MB) 2022-01-18T17:24:06,823 Collecting glypy 2022-01-18T17:24:06,854 Downloading https://www.piwheels.org/simple/glypy/glypy-1.0.5-cp39-cp39-linux_armv7l.whl (1.5 MB) 2022-01-18T17:24:07,709 Collecting six 2022-01-18T17:24:07,738 Using cached https://www.piwheels.org/simple/six/six-1.16.0-py2.py3-none-any.whl (11 kB) 2022-01-18T17:24:07,965 Collecting hjson 2022-01-18T17:24:08,016 Downloading https://www.piwheels.org/simple/hjson/hjson-3.0.2-py3-none-any.whl (54 kB) 2022-01-18T17:24:11,597 Installing collected packages: six, hjson, wheel, setuptools, glypy, Cython 2022-01-18T17:24:12,456 changing mode of /tmp/pip-build-env-g6wfwvyp/overlay/bin/wheel to 755 2022-01-18T17:24:24,746 changing mode of /tmp/pip-build-env-g6wfwvyp/overlay/bin/cygdb to 755 2022-01-18T17:24:24,749 changing mode of /tmp/pip-build-env-g6wfwvyp/overlay/bin/cython to 755 2022-01-18T17:24:24,753 changing mode of /tmp/pip-build-env-g6wfwvyp/overlay/bin/cythonize to 755 2022-01-18T17:24:24,813 Successfully installed Cython-0.29.26 glypy-1.0.5 hjson-3.0.2 setuptools-60.5.0 six-1.16.0 wheel-0.37.1 2022-01-18T17:24:25,468 Installing build dependencies: finished with status 'done' 2022-01-18T17:24:25,507 Getting requirements to build wheel: started 2022-01-18T17:24:25,508 Running command /usr/bin/python3 /usr/local/lib/python3.9/dist-packages/pip/_vendor/pep517/in_process/_in_process.py get_requires_for_build_wheel /tmp/tmp4cr5em_w 2022-01-18T17:24:30,701 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-rgrtcd63/glycopeptidepy_d0539841be82480bb49861061d306a57/glycopeptidepy/_c/structure/base.pxd 2022-01-18T17:24:30,703 tree = Parsing.p_module(s, pxd, full_module_name) 2022-01-18T17:24:33,358 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-rgrtcd63/glycopeptidepy_d0539841be82480bb49861061d306a57/glycopeptidepy/_c/structure/fragment.pxd 2022-01-18T17:24:33,358 tree = Parsing.p_module(s, pxd, full_module_name) 2022-01-18T17:24:39,169 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-rgrtcd63/glycopeptidepy_d0539841be82480bb49861061d306a57/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd 2022-01-18T17:24:39,169 tree = Parsing.p_module(s, pxd, full_module_name) 2022-01-18T17:24:41,912 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-rgrtcd63/glycopeptidepy_d0539841be82480bb49861061d306a57/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd 2022-01-18T17:24:41,912 tree = Parsing.p_module(s, pxd, full_module_name) 2022-01-18T17:24:47,603 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-rgrtcd63/glycopeptidepy_d0539841be82480bb49861061d306a57/glycopeptidepy/_c/structure/modification/rule.pxd 2022-01-18T17:24:47,604 tree = Parsing.p_module(s, pxd, full_module_name) 2022-01-18T17:24:48,906 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-rgrtcd63/glycopeptidepy_d0539841be82480bb49861061d306a57/glycopeptidepy/_c/algorithm.pyx 2022-01-18T17:24:48,907 tree = Parsing.p_module(s, pxd, full_module_name) 2022-01-18T17:24:50,725 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-rgrtcd63/glycopeptidepy_d0539841be82480bb49861061d306a57/glycopeptidepy/_c/collectiontools.pxd 2022-01-18T17:24:50,726 tree = Parsing.p_module(s, pxd, full_module_name) 2022-01-18T17:24:53,051 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-rgrtcd63/glycopeptidepy_d0539841be82480bb49861061d306a57/glycopeptidepy/_c/count_table.pxd 2022-01-18T17:24:53,052 tree = Parsing.p_module(s, pxd, full_module_name) 2022-01-18T17:24:57,645 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-rgrtcd63/glycopeptidepy_d0539841be82480bb49861061d306a57/glycopeptidepy/_c/parser.pxd 2022-01-18T17:24:57,646 tree = Parsing.p_module(s, pxd, full_module_name) 2022-01-18T17:25:00,276 warning: glycopeptidepy/_c/parser.pyx:224:23: Unreachable code 2022-01-18T17:25:00,835 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-rgrtcd63/glycopeptidepy_d0539841be82480bb49861061d306a57/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd 2022-01-18T17:25:00,836 tree = Parsing.p_module(s, pxd, full_module_name) 2022-01-18T17:25:05,859 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-rgrtcd63/glycopeptidepy_d0539841be82480bb49861061d306a57/glycopeptidepy/_c/structure/glycan.pxd 2022-01-18T17:25:05,860 tree = Parsing.p_module(s, pxd, full_module_name) 2022-01-18T17:25:08,144 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-rgrtcd63/glycopeptidepy_d0539841be82480bb49861061d306a57/glycopeptidepy/_c/structure/modification/modification.pxd 2022-01-18T17:25:08,144 tree = Parsing.p_module(s, pxd, full_module_name) 2022-01-18T17:25:08,812 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-rgrtcd63/glycopeptidepy_d0539841be82480bb49861061d306a57/glycopeptidepy/_c/structure/modification/source.pxd 2022-01-18T17:25:08,813 tree = Parsing.p_module(s, pxd, full_module_name) 2022-01-18T17:25:09,906 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-rgrtcd63/glycopeptidepy_d0539841be82480bb49861061d306a57/glycopeptidepy/_c/structure/sequence_methods.pxd 2022-01-18T17:25:09,907 tree = Parsing.p_module(s, pxd, full_module_name) 2022-01-18T17:25:13,904 Compiling glycopeptidepy/_c/collectiontools.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2022-01-18T17:25:13,905 Compiling glycopeptidepy/_c/count_table.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2022-01-18T17:25:13,905 Compiling glycopeptidepy/_c/parser.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2022-01-18T17:25:13,906 Compiling glycopeptidepy/_c/structure/base.pyx because it depends on /tmp/pip-build-env-g6wfwvyp/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2022-01-18T17:25:13,906 Compiling glycopeptidepy/_c/structure/fragment.pyx because it depends on /tmp/pip-build-env-g6wfwvyp/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2022-01-18T17:25:13,906 Compiling glycopeptidepy/_c/structure/glycan.pyx because it depends on /tmp/pip-build-env-g6wfwvyp/overlay/lib/python3.9/site-packages/glypy/utils/cenum.pxd. 2022-01-18T17:25:13,907 Compiling glycopeptidepy/_c/structure/sequence_methods.pyx because it depends on /tmp/pip-build-env-g6wfwvyp/overlay/lib/python3.9/site-packages/glypy/utils/cenum.pxd. 2022-01-18T17:25:13,907 Compiling glycopeptidepy/_c/structure/modification/rule.pyx because it depends on /tmp/pip-build-env-g6wfwvyp/overlay/lib/python3.9/site-packages/glypy/utils/cenum.pxd. 2022-01-18T17:25:13,907 Compiling glycopeptidepy/_c/structure/modification/modification.pyx because it depends on /tmp/pip-build-env-g6wfwvyp/overlay/lib/python3.9/site-packages/glypy/utils/cenum.pxd. 2022-01-18T17:25:13,907 Compiling glycopeptidepy/_c/structure/modification/source.pyx because it depends on /tmp/pip-build-env-g6wfwvyp/overlay/lib/python3.9/site-packages/glypy/utils/cenum.pxd. 2022-01-18T17:25:13,908 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx because it depends on /tmp/pip-build-env-g6wfwvyp/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2022-01-18T17:25:13,908 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx because it depends on /tmp/pip-build-env-g6wfwvyp/overlay/lib/python3.9/site-packages/glypy/utils/cenum.pxd. 2022-01-18T17:25:13,908 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx because it depends on /tmp/pip-build-env-g6wfwvyp/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2022-01-18T17:25:13,909 Compiling glycopeptidepy/_c/algorithm.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2022-01-18T17:25:13,909 [ 1/14] Cythonizing glycopeptidepy/_c/structure/base.pyx 2022-01-18T17:25:13,909 [ 2/14] Cythonizing glycopeptidepy/_c/structure/fragment.pyx 2022-01-18T17:25:13,909 [ 3/14] Cythonizing glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx 2022-01-18T17:25:13,910 [ 4/14] Cythonizing glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx 2022-01-18T17:25:13,910 [ 5/14] Cythonizing glycopeptidepy/_c/structure/modification/rule.pyx 2022-01-18T17:25:13,910 [ 6/14] Cythonizing glycopeptidepy/_c/algorithm.pyx 2022-01-18T17:25:13,911 [ 7/14] Cythonizing glycopeptidepy/_c/collectiontools.pyx 2022-01-18T17:25:13,911 [ 8/14] Cythonizing glycopeptidepy/_c/count_table.pyx 2022-01-18T17:25:13,911 [ 9/14] Cythonizing glycopeptidepy/_c/parser.pyx 2022-01-18T17:25:13,912 [10/14] Cythonizing glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx 2022-01-18T17:25:13,912 [11/14] Cythonizing glycopeptidepy/_c/structure/glycan.pyx 2022-01-18T17:25:13,912 [12/14] Cythonizing glycopeptidepy/_c/structure/modification/modification.pyx 2022-01-18T17:25:13,913 [13/14] Cythonizing glycopeptidepy/_c/structure/modification/source.pyx 2022-01-18T17:25:13,913 [14/14] Cythonizing glycopeptidepy/_c/structure/sequence_methods.pyx 2022-01-18T17:25:14,338 running egg_info 2022-01-18T17:25:14,438 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2022-01-18T17:25:14,438 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2022-01-18T17:25:14,842 writing manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2022-01-18T17:25:15,271 Getting requirements to build wheel: finished with status 'done' 2022-01-18T17:25:15,292 Created temporary directory: /tmp/pip-modern-metadata-51ze8m03 2022-01-18T17:25:15,297 Preparing metadata (pyproject.toml): started 2022-01-18T17:25:15,298 Running command /usr/bin/python3 /usr/local/lib/python3.9/dist-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /tmp/tmpxyqqa739 2022-01-18T17:25:19,375 running dist_info 2022-01-18T17:25:19,403 creating /tmp/pip-modern-metadata-51ze8m03/glycopeptidepy.egg-info 2022-01-18T17:25:19,419 writing manifest file '/tmp/pip-modern-metadata-51ze8m03/glycopeptidepy.egg-info/SOURCES.txt' 2022-01-18T17:25:19,464 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2022-01-18T17:25:19,464 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2022-01-18T17:25:19,879 writing manifest file '/tmp/pip-modern-metadata-51ze8m03/glycopeptidepy.egg-info/SOURCES.txt' 2022-01-18T17:25:20,241 Preparing metadata (pyproject.toml): finished with status 'done' 2022-01-18T17:25:20,252 Source in /tmp/pip-wheel-rgrtcd63/glycopeptidepy_d0539841be82480bb49861061d306a57 has version 0.0.14, which satisfies requirement glycopeptidepy==0.0.14 from https://files.pythonhosted.org/packages/91/7f/28c2f58d986940fde5a0d002edf4e1bb21bfc61f899a12d1d49b0ce69eb7/glycopeptidepy-0.0.14.tar.gz#sha256=216732ddfd5e2c56f4e85d2606a07f0b53d75db240b9723e9fd032effe93ff36 2022-01-18T17:25:20,255 Removed glycopeptidepy==0.0.14 from https://files.pythonhosted.org/packages/91/7f/28c2f58d986940fde5a0d002edf4e1bb21bfc61f899a12d1d49b0ce69eb7/glycopeptidepy-0.0.14.tar.gz#sha256=216732ddfd5e2c56f4e85d2606a07f0b53d75db240b9723e9fd032effe93ff36 from build tracker '/tmp/pip-req-tracker-z537y4lx' 2022-01-18T17:25:20,263 Created temporary directory: /tmp/pip-unpack-hlqtvzp_ 2022-01-18T17:25:20,264 Building wheels for collected packages: glycopeptidepy 2022-01-18T17:25:20,273 Created temporary directory: /tmp/pip-wheel-iclt2rhy 2022-01-18T17:25:20,273 Destination directory: /tmp/pip-wheel-iclt2rhy 2022-01-18T17:25:20,280 Building wheel for glycopeptidepy (pyproject.toml): started 2022-01-18T17:25:20,281 Running command /usr/bin/python3 /usr/local/lib/python3.9/dist-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmpswnkk4bj 2022-01-18T17:25:24,401 running bdist_wheel 2022-01-18T17:25:24,408 running build 2022-01-18T17:25:24,409 running build_py 2022-01-18T17:25:24,417 creating build 2022-01-18T17:25:24,418 creating build/lib.linux-armv7l-3.9 2022-01-18T17:25:24,419 creating build/lib.linux-armv7l-3.9/glycopeptidepy 2022-01-18T17:25:24,421 copying glycopeptidepy/enzyme.py -> build/lib.linux-armv7l-3.9/glycopeptidepy 2022-01-18T17:25:24,426 copying glycopeptidepy/version.py -> build/lib.linux-armv7l-3.9/glycopeptidepy 2022-01-18T17:25:24,428 copying glycopeptidepy/algorithm.py -> build/lib.linux-armv7l-3.9/glycopeptidepy 2022-01-18T17:25:24,433 copying glycopeptidepy/__init__.py -> build/lib.linux-armv7l-3.9/glycopeptidepy 2022-01-18T17:25:24,438 creating build/lib.linux-armv7l-3.9/glycopeptidepy/_c 2022-01-18T17:25:24,439 copying glycopeptidepy/_c/cythonize.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c 2022-01-18T17:25:24,442 copying glycopeptidepy/_c/__init__.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c 2022-01-18T17:25:24,447 creating build/lib.linux-armv7l-3.9/glycopeptidepy/test 2022-01-18T17:25:24,449 copying glycopeptidepy/test/test_fragmentation_strategy.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/test 2022-01-18T17:25:24,452 copying glycopeptidepy/test/common.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/test 2022-01-18T17:25:24,455 copying glycopeptidepy/test/test_sequence.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/test 2022-01-18T17:25:24,460 copying glycopeptidepy/test/test_sequence_composition.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/test 2022-01-18T17:25:24,463 copying glycopeptidepy/test/test_algorithms.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/test 2022-01-18T17:25:24,466 copying glycopeptidepy/test/test_uniprot.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/test 2022-01-18T17:25:24,469 copying glycopeptidepy/test/test_intervals.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/test 2022-01-18T17:25:24,472 copying glycopeptidepy/test/test_utils.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/test 2022-01-18T17:25:24,476 copying glycopeptidepy/test/test_fragment.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/test 2022-01-18T17:25:24,479 copying glycopeptidepy/test/test_residue.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/test 2022-01-18T17:25:24,482 copying glycopeptidepy/test/test_fasta.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/test 2022-01-18T17:25:24,485 copying glycopeptidepy/test/__init__.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/test 2022-01-18T17:25:24,487 copying glycopeptidepy/test/test_enzyme.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/test 2022-01-18T17:25:24,490 copying glycopeptidepy/test/test_modification.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/test 2022-01-18T17:25:24,496 creating build/lib.linux-armv7l-3.9/glycopeptidepy/io 2022-01-18T17:25:24,497 copying glycopeptidepy/io/uniprot.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/io 2022-01-18T17:25:24,502 copying glycopeptidepy/io/nextprot.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/io 2022-01-18T17:25:24,504 copying glycopeptidepy/io/fasta.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/io 2022-01-18T17:25:24,510 copying glycopeptidepy/io/utils.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/io 2022-01-18T17:25:24,512 copying glycopeptidepy/io/mzid.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/io 2022-01-18T17:25:24,516 copying glycopeptidepy/io/__init__.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/io 2022-01-18T17:25:24,518 copying glycopeptidepy/io/annotation.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/io 2022-01-18T17:25:24,524 creating build/lib.linux-armv7l-3.9/glycopeptidepy/utils 2022-01-18T17:25:24,525 copying glycopeptidepy/utils/sequence_tree.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/utils 2022-01-18T17:25:24,529 copying glycopeptidepy/utils/iterators.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/utils 2022-01-18T17:25:24,532 copying glycopeptidepy/utils/collectiontools.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/utils 2022-01-18T17:25:24,535 copying glycopeptidepy/utils/memoize.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/utils 2022-01-18T17:25:24,538 copying glycopeptidepy/utils/__init__.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/utils 2022-01-18T17:25:24,541 copying glycopeptidepy/utils/intervals.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/utils 2022-01-18T17:25:24,547 creating build/lib.linux-armv7l-3.9/glycopeptidepy/structure 2022-01-18T17:25:24,549 copying glycopeptidepy/structure/composition.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure 2022-01-18T17:25:24,552 copying glycopeptidepy/structure/parser.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure 2022-01-18T17:25:24,556 copying glycopeptidepy/structure/residue.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure 2022-01-18T17:25:24,560 copying glycopeptidepy/structure/glycan.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure 2022-01-18T17:25:24,564 copying glycopeptidepy/structure/sequence_composition.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure 2022-01-18T17:25:24,567 copying glycopeptidepy/structure/__init__.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure 2022-01-18T17:25:24,571 copying glycopeptidepy/structure/fragment.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure 2022-01-18T17:25:24,575 copying glycopeptidepy/structure/base.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure 2022-01-18T17:25:24,578 copying glycopeptidepy/structure/constants.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure 2022-01-18T17:25:24,581 copying glycopeptidepy/structure/terminal_group.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure 2022-01-18T17:25:24,585 creating build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure 2022-01-18T17:25:24,586 copying glycopeptidepy/_c/structure/__init__.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure 2022-01-18T17:25:24,590 creating build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/modification 2022-01-18T17:25:24,591 copying glycopeptidepy/_c/structure/modification/__init__.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/modification 2022-01-18T17:25:24,595 creating build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/fragmentation_strategy 2022-01-18T17:25:24,596 copying glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/fragmentation_strategy 2022-01-18T17:25:24,600 creating build/lib.linux-armv7l-3.9/glycopeptidepy/io/cv 2022-01-18T17:25:24,602 copying glycopeptidepy/io/cv/peff.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/io/cv 2022-01-18T17:25:24,606 copying glycopeptidepy/io/cv/term.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/io/cv 2022-01-18T17:25:24,609 copying glycopeptidepy/io/cv/__init__.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/io/cv 2022-01-18T17:25:24,612 copying glycopeptidepy/io/cv/uniprot_ptm.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/io/cv 2022-01-18T17:25:24,616 creating build/lib.linux-armv7l-3.9/glycopeptidepy/structure/modification 2022-01-18T17:25:24,618 copying glycopeptidepy/structure/modification/target.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure/modification 2022-01-18T17:25:24,622 copying glycopeptidepy/structure/modification/source.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure/modification 2022-01-18T17:25:24,627 copying glycopeptidepy/structure/modification/rule.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure/modification 2022-01-18T17:25:24,632 copying glycopeptidepy/structure/modification/descriptors.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure/modification 2022-01-18T17:25:24,635 copying glycopeptidepy/structure/modification/utils.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure/modification 2022-01-18T17:25:24,638 copying glycopeptidepy/structure/modification/modification.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure/modification 2022-01-18T17:25:24,642 copying glycopeptidepy/structure/modification/glycosylation.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure/modification 2022-01-18T17:25:24,647 copying glycopeptidepy/structure/modification/__init__.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure/modification 2022-01-18T17:25:24,651 creating build/lib.linux-armv7l-3.9/glycopeptidepy/structure/fragmentation_strategy 2022-01-18T17:25:24,653 copying glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure/fragmentation_strategy 2022-01-18T17:25:24,660 copying glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure/fragmentation_strategy 2022-01-18T17:25:24,665 copying glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure/fragmentation_strategy 2022-01-18T17:25:24,668 copying glycopeptidepy/structure/fragmentation_strategy/base.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure/fragmentation_strategy 2022-01-18T17:25:24,673 creating build/lib.linux-armv7l-3.9/glycopeptidepy/structure/sequence 2022-01-18T17:25:24,674 copying glycopeptidepy/structure/sequence/mutable_sequence.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure/sequence 2022-01-18T17:25:24,678 copying glycopeptidepy/structure/sequence/implementation.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure/sequence 2022-01-18T17:25:24,682 copying glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure/sequence 2022-01-18T17:25:24,686 copying glycopeptidepy/structure/sequence/__init__.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure/sequence 2022-01-18T17:25:24,689 copying glycopeptidepy/structure/sequence/base.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure/sequence 2022-01-18T17:25:24,695 creating build/lib.linux-armv7l-3.9/glycopeptidepy/structure/modification/data 2022-01-18T17:25:24,696 copying glycopeptidepy/structure/modification/data/patch_unimod.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure/modification/data 2022-01-18T17:25:24,700 copying glycopeptidepy/structure/modification/data/__init__.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure/modification/data 2022-01-18T17:25:24,702 copying glycopeptidepy/structure/modification/data/unimod.py -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure/modification/data 2022-01-18T17:25:24,707 running egg_info 2022-01-18T17:25:24,783 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2022-01-18T17:25:24,783 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2022-01-18T17:25:25,183 writing manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2022-01-18T17:25:25,202 copying glycopeptidepy/_c/algorithm.c -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c 2022-01-18T17:25:25,237 copying glycopeptidepy/_c/algorithm.pyx -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c 2022-01-18T17:25:25,241 copying glycopeptidepy/_c/collectiontools.c -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c 2022-01-18T17:25:25,262 copying glycopeptidepy/_c/collectiontools.pxd -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c 2022-01-18T17:25:25,266 copying glycopeptidepy/_c/collectiontools.pyx -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c 2022-01-18T17:25:25,270 copying glycopeptidepy/_c/compat.h -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c 2022-01-18T17:25:25,275 copying glycopeptidepy/_c/compat.pxd -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c 2022-01-18T17:25:25,281 copying glycopeptidepy/_c/count_table.c -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c 2022-01-18T17:25:25,323 copying glycopeptidepy/_c/count_table.pxd -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c 2022-01-18T17:25:25,327 copying glycopeptidepy/_c/count_table.pyx -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c 2022-01-18T17:25:25,334 copying glycopeptidepy/_c/parser.c -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c 2022-01-18T17:25:25,358 copying glycopeptidepy/_c/parser.pxd -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c 2022-01-18T17:25:25,362 copying glycopeptidepy/_c/parser.pyx -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c 2022-01-18T17:25:25,367 copying glycopeptidepy/_c/structure/base.c -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure 2022-01-18T17:25:25,414 copying glycopeptidepy/_c/structure/base.pxd -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure 2022-01-18T17:25:25,418 copying glycopeptidepy/_c/structure/base.pyx -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure 2022-01-18T17:25:25,423 copying glycopeptidepy/_c/structure/constants.c -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure 2022-01-18T17:25:25,440 copying glycopeptidepy/_c/structure/constants.pxd -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure 2022-01-18T17:25:25,444 copying glycopeptidepy/_c/structure/constants.pyx -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure 2022-01-18T17:25:25,447 copying glycopeptidepy/_c/structure/fragment.c -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure 2022-01-18T17:25:25,512 copying glycopeptidepy/_c/structure/fragment.pxd -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure 2022-01-18T17:25:25,516 copying glycopeptidepy/_c/structure/fragment.pyx -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure 2022-01-18T17:25:25,522 copying glycopeptidepy/_c/structure/glycan.c -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure 2022-01-18T17:25:25,560 copying glycopeptidepy/_c/structure/glycan.pxd -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure 2022-01-18T17:25:25,564 copying glycopeptidepy/_c/structure/glycan.pyx -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure 2022-01-18T17:25:25,569 copying glycopeptidepy/_c/structure/sequence_methods.c -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure 2022-01-18T17:25:25,612 copying glycopeptidepy/_c/structure/sequence_methods.pxd -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure 2022-01-18T17:25:25,616 copying glycopeptidepy/_c/structure/sequence_methods.pyx -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure 2022-01-18T17:25:25,622 copying glycopeptidepy/_c/structure/modification/modification.c -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/modification 2022-01-18T17:25:25,643 copying glycopeptidepy/_c/structure/modification/modification.pxd -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/modification 2022-01-18T17:25:25,647 copying glycopeptidepy/_c/structure/modification/modification.pyx -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/modification 2022-01-18T17:25:25,651 copying glycopeptidepy/_c/structure/modification/rule.c -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/modification 2022-01-18T17:25:25,680 copying glycopeptidepy/_c/structure/modification/rule.pxd -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/modification 2022-01-18T17:25:25,683 copying glycopeptidepy/_c/structure/modification/rule.pyx -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/modification 2022-01-18T17:25:25,687 copying glycopeptidepy/_c/structure/modification/source.c -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/modification 2022-01-18T17:25:25,706 copying glycopeptidepy/_c/structure/modification/source.pxd -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/modification 2022-01-18T17:25:25,709 copying glycopeptidepy/_c/structure/modification/source.pyx -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/modification 2022-01-18T17:25:25,713 copying glycopeptidepy/_c/structure/modification/target.pyx -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/modification 2022-01-18T17:25:25,717 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/fragmentation_strategy 2022-01-18T17:25:25,740 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/fragmentation_strategy 2022-01-18T17:25:25,744 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/fragmentation_strategy 2022-01-18T17:25:25,748 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/fragmentation_strategy 2022-01-18T17:25:25,823 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/fragmentation_strategy 2022-01-18T17:25:25,826 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/fragmentation_strategy 2022-01-18T17:25:25,833 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/fragmentation_strategy 2022-01-18T17:25:25,883 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/fragmentation_strategy 2022-01-18T17:25:25,887 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/fragmentation_strategy 2022-01-18T17:25:25,892 copying glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure/modification/data 2022-01-18T17:25:25,896 copying glycopeptidepy/structure/modification/data/unimod.json -> build/lib.linux-armv7l-3.9/glycopeptidepy/structure/modification/data 2022-01-18T17:25:26,005 running build_ext 2022-01-18T17:25:26,019 creating build/temp.linux-armv7l-3.9 2022-01-18T17:25:26,020 creating build/temp.linux-armv7l-3.9/glycopeptidepy 2022-01-18T17:25:26,021 creating build/temp.linux-armv7l-3.9/glycopeptidepy/_c 2022-01-18T17:25:26,022 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/collectiontools.c -o build/temp.linux-armv7l-3.9/glycopeptidepy/_c/collectiontools.o 2022-01-18T17:25:35,006 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/glycopeptidepy/_c/collectiontools.o -L/usr/lib -o build/lib.linux-armv7l-3.9/glycopeptidepy/_c/collectiontools.cpython-39-arm-linux-gnueabihf.so 2022-01-18T17:25:35,262 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/count_table.c -o build/temp.linux-armv7l-3.9/glycopeptidepy/_c/count_table.o 2022-01-18T17:25:37,371 glycopeptidepy/_c/count_table.c:2370:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist’ defined but not used [-Wunused-function] 2022-01-18T17:25:37,371 2370 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist(size_t __pyx_v_n, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_inst) { 2022-01-18T17:25:37,371 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-01-18T17:25:37,374 glycopeptidepy/_c/count_table.c:2112:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get’ defined but not used [-Wunused-function] 2022-01-18T17:25:37,375 2112 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) { 2022-01-18T17:25:37,375 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-01-18T17:25:37,378 glycopeptidepy/_c/count_table.c:1882:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put’ defined but not used [-Wunused-function] 2022-01-18T17:25:37,378 1882 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) { 2022-01-18T17:25:37,378 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-01-18T17:25:55,261 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/glycopeptidepy/_c/count_table.o -L/usr/lib -o build/lib.linux-armv7l-3.9/glycopeptidepy/_c/count_table.cpython-39-arm-linux-gnueabihf.so 2022-01-18T17:25:55,559 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I./glycopeptidepy/_c -I/usr/include/python3.9 -c glycopeptidepy/_c/parser.c -o build/temp.linux-armv7l-3.9/glycopeptidepy/_c/parser.o 2022-01-18T17:25:56,262 In file included from glycopeptidepy/_c/parser.c:700: 2022-01-18T17:25:56,262 glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined 2022-01-18T17:25:56,262 38 | #define PyInt_Check PyLong_Check 2022-01-18T17:25:56,263 | 2022-01-18T17:25:56,268 glycopeptidepy/_c/parser.c:609: note: this is the location of the previous definition 2022-01-18T17:25:56,269 609 | #define PyInt_Check(op) PyLong_Check(op) 2022-01-18T17:25:56,269 | 2022-01-18T17:25:56,269 In file included from glycopeptidepy/_c/parser.c:700: 2022-01-18T17:25:56,270 glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined 2022-01-18T17:25:56,270 39 | #define PyInt_CheckExact PyLong_CheckExact 2022-01-18T17:25:56,270 | 2022-01-18T17:25:56,271 glycopeptidepy/_c/parser.c:610: note: this is the location of the previous definition 2022-01-18T17:25:56,271 610 | #define PyInt_CheckExact(op) PyLong_CheckExact(op) 2022-01-18T17:25:56,271 | 2022-01-18T17:25:56,295 glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser__cstring_sequence_tokenizer’: 2022-01-18T17:25:56,298 glycopeptidepy/_c/parser.c:1935:21: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-01-18T17:25:56,298 1935 | __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence); 2022-01-18T17:25:56,298 | ^ 2022-01-18T17:25:56,367 glycopeptidepy/_c/parser.c: In function ‘__pyx_fuse_1__pyx_f_14glycopeptidepy_2_c_6parser__sequence_tokenizer’: 2022-01-18T17:25:56,372 glycopeptidepy/_c/parser.c:4425:66: warning: self-comparison always evaluates to true [-Wtautological-compare] 2022-01-18T17:25:56,373 4425 | if (!(likely(PyList_CheckExact(Py_None))||((Py_None) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "list", Py_TYPE(Py_None)->tp_name), 0))) __PYX_ERR(0, 295, __pyx_L1_error) 2022-01-18T17:25:56,373 | ^~ 2022-01-18T17:25:56,390 glycopeptidepy/_c/parser.c:4852:66: warning: self-comparison always evaluates to true [-Wtautological-compare] 2022-01-18T17:25:56,391 4852 | if (!(likely(PyList_CheckExact(Py_None))||((Py_None) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "list", Py_TYPE(Py_None)->tp_name), 0))) __PYX_ERR(0, 328, __pyx_L1_error) 2022-01-18T17:25:56,391 | ^~ 2022-01-18T17:25:56,403 glycopeptidepy/_c/parser.c:5058:64: warning: self-comparison always evaluates to true [-Wtautological-compare] 2022-01-18T17:25:56,403 5058 | if (!(likely(PyList_CheckExact(Py_None))||((Py_None) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "list", Py_TYPE(Py_None)->tp_name), 0))) __PYX_ERR(0, 344, __pyx_L1_error) 2022-01-18T17:25:56,404 | ^~ 2022-01-18T17:25:56,431 glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser_parse_simple’: 2022-01-18T17:25:56,439 glycopeptidepy/_c/parser.c:5921:23: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-01-18T17:25:56,439 5921 | __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence); 2022-01-18T17:25:56,439 | ^ 2022-01-18T17:26:08,796 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/glycopeptidepy/_c/parser.o -L/usr/lib -o build/lib.linux-armv7l-3.9/glycopeptidepy/_c/parser.cpython-39-arm-linux-gnueabihf.so 2022-01-18T17:26:09,046 creating build/temp.linux-armv7l-3.9/glycopeptidepy/_c/structure 2022-01-18T17:26:09,048 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/base.c -o build/temp.linux-armv7l-3.9/glycopeptidepy/_c/structure/base.o 2022-01-18T17:26:37,294 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/glycopeptidepy/_c/structure/base.o -L/usr/lib -o build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/base.cpython-39-arm-linux-gnueabihf.so 2022-01-18T17:26:37,640 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I./glycopeptidepy/_c -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/fragment.c -o build/temp.linux-armv7l-3.9/glycopeptidepy/_c/structure/fragment.o 2022-01-18T17:26:38,364 In file included from glycopeptidepy/_c/structure/fragment.c:701: 2022-01-18T17:26:38,365 ./glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined 2022-01-18T17:26:38,365 38 | #define PyInt_Check PyLong_Check 2022-01-18T17:26:38,365 | 2022-01-18T17:26:38,378 glycopeptidepy/_c/structure/fragment.c:609: note: this is the location of the previous definition 2022-01-18T17:26:38,379 609 | #define PyInt_Check(op) PyLong_Check(op) 2022-01-18T17:26:38,379 | 2022-01-18T17:26:38,380 In file included from glycopeptidepy/_c/structure/fragment.c:701: 2022-01-18T17:26:38,380 ./glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined 2022-01-18T17:26:38,380 39 | #define PyInt_CheckExact PyLong_CheckExact 2022-01-18T17:26:38,381 | 2022-01-18T17:26:38,381 glycopeptidepy/_c/structure/fragment.c:610: note: this is the location of the previous definition 2022-01-18T17:26:38,381 610 | #define PyInt_CheckExact(op) PyLong_CheckExact(op) 2022-01-18T17:26:38,382 | 2022-01-18T17:26:38,435 glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_init_str_ints’: 2022-01-18T17:26:38,440 glycopeptidepy/_c/structure/fragment.c:3156:19: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-01-18T17:26:38,440 3156 | __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z)); 2022-01-18T17:26:38,440 | ^ 2022-01-18T17:26:38,444 glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_get_str_int’: 2022-01-18T17:26:38,447 glycopeptidepy/_c/structure/fragment.c:3385:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-01-18T17:26:38,448 3385 | __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z)); 2022-01-18T17:26:38,448 | ^ 2022-01-18T17:26:38,698 glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_15PeptideFragment_get_fragment_name’: 2022-01-18T17:26:38,711 glycopeptidepy/_c/structure/fragment.c:10288:22: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-01-18T17:26:38,711 10288 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2022-01-18T17:26:38,712 | ^ 2022-01-18T17:26:38,733 glycopeptidepy/_c/structure/fragment.c:10603:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-01-18T17:26:38,734 10603 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2022-01-18T17:26:38,734 | ^ 2022-01-18T17:26:38,749 glycopeptidepy/_c/structure/fragment.c:10777:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-01-18T17:26:38,750 10777 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2022-01-18T17:26:38,750 | ^ 2022-01-18T17:26:38,765 glycopeptidepy/_c/structure/fragment.c:10956:24: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-01-18T17:26:38,765 10956 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2022-01-18T17:26:38,766 | ^ 2022-01-18T17:27:25,012 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/glycopeptidepy/_c/structure/fragment.o -L/usr/lib -o build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/fragment.cpython-39-arm-linux-gnueabihf.so 2022-01-18T17:27:25,421 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/constants.c -o build/temp.linux-armv7l-3.9/glycopeptidepy/_c/structure/constants.o 2022-01-18T17:27:32,355 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/glycopeptidepy/_c/structure/constants.o -L/usr/lib -o build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/constants.cpython-39-arm-linux-gnueabihf.so 2022-01-18T17:27:32,595 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/glycan.c -o build/temp.linux-armv7l-3.9/glycopeptidepy/_c/structure/glycan.o 2022-01-18T17:27:52,861 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/glycopeptidepy/_c/structure/glycan.o -L/usr/lib -o build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/glycan.cpython-39-arm-linux-gnueabihf.so 2022-01-18T17:27:53,171 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/sequence_methods.c -o build/temp.linux-armv7l-3.9/glycopeptidepy/_c/structure/sequence_methods.o 2022-01-18T17:27:54,291 glycopeptidepy/_c/structure/sequence_methods.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_16sequence_methods_add_modification’: 2022-01-18T17:27:54,306 glycopeptidepy/_c/structure/sequence_methods.c:11614:37: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-01-18T17:27:54,306 11614 | __pyx_t_2 = ((__pyx_v_position_ >= ((struct __pyx_vtabstruct_14glycopeptidepy_2_c_9structure_16sequence_methods__PeptideSequenceCore *)__pyx_v_self->__pyx_base.__pyx_vtab)->get_size(__pyx_v_self)) != 0); 2022-01-18T17:27:54,306 | ^~ 2022-01-18T17:28:21,623 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/glycopeptidepy/_c/structure/sequence_methods.o -L/usr/lib -o build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/sequence_methods.cpython-39-arm-linux-gnueabihf.so 2022-01-18T17:28:21,948 creating build/temp.linux-armv7l-3.9/glycopeptidepy/_c/structure/modification 2022-01-18T17:28:21,949 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/modification/rule.c -o build/temp.linux-armv7l-3.9/glycopeptidepy/_c/structure/modification/rule.o 2022-01-18T17:28:39,718 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/glycopeptidepy/_c/structure/modification/rule.o -L/usr/lib -o build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/modification/rule.cpython-39-arm-linux-gnueabihf.so 2022-01-18T17:28:40,007 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/modification/modification.c -o build/temp.linux-armv7l-3.9/glycopeptidepy/_c/structure/modification/modification.o 2022-01-18T17:28:49,323 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/glycopeptidepy/_c/structure/modification/modification.o -L/usr/lib -o build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/modification/modification.cpython-39-arm-linux-gnueabihf.so 2022-01-18T17:28:49,573 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/modification/source.c -o build/temp.linux-armv7l-3.9/glycopeptidepy/_c/structure/modification/source.o 2022-01-18T17:28:59,112 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/glycopeptidepy/_c/structure/modification/source.o -L/usr/lib -o build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/modification/source.cpython-39-arm-linux-gnueabihf.so 2022-01-18T17:28:59,371 creating build/temp.linux-armv7l-3.9/glycopeptidepy/_c/structure/fragmentation_strategy 2022-01-18T17:28:59,372 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/fragmentation_strategy/base.c -o build/temp.linux-armv7l-3.9/glycopeptidepy/_c/structure/fragmentation_strategy/base.o 2022-01-18T17:29:08,623 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/glycopeptidepy/_c/structure/fragmentation_strategy/base.o -L/usr/lib -o build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-39-arm-linux-gnueabihf.so 2022-01-18T17:29:08,874 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -o build/temp.linux-armv7l-3.9/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o 2022-01-18T17:29:50,418 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o -L/usr/lib -o build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-39-arm-linux-gnueabihf.so 2022-01-18T17:29:50,797 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -o build/temp.linux-armv7l-3.9/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o 2022-01-18T17:29:51,921 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_fucosylate_extended’: 2022-01-18T17:29:51,934 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:9537:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2022-01-18T17:29:51,934 9537 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2022-01-18T17:29:51,935 | ^ 2022-01-18T17:29:51,948 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:9553:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2022-01-18T17:29:51,949 9553 | for (__pyx_t_10 = 1; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2022-01-18T17:29:51,949 | ^ 2022-01-18T17:29:52,148 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_n_glycan_stub_fragments’: 2022-01-18T17:29:52,167 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:13645:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-01-18T17:29:52,167 13645 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2022-01-18T17:29:52,167 | ^ 2022-01-18T17:29:52,196 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_o_glycan_stub_fragments’: 2022-01-18T17:29:52,216 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:14269:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2022-01-18T17:29:52,216 14269 | for (__pyx_t_7 = 0; __pyx_t_7 < __pyx_t_13; __pyx_t_7+=1) { 2022-01-18T17:29:52,217 | ^ 2022-01-18T17:29:52,246 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:14027:7: warning: variable ‘__pyx_t_15’ set but not used [-Wunused-but-set-variable] 2022-01-18T17:29:52,247 14027 | int __pyx_t_15; 2022-01-18T17:29:52,247 | ^~~~~~~~~~ 2022-01-18T17:29:52,323 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_gag_linker_stub_fragments’: 2022-01-18T17:29:52,345 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:16076:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2022-01-18T17:29:52,345 16076 | for (__pyx_t_7 = 0; __pyx_t_7 < __pyx_t_13; __pyx_t_7+=1) { 2022-01-18T17:29:52,346 | ^ 2022-01-18T17:29:52,378 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:15834:7: warning: variable ‘__pyx_t_15’ set but not used [-Wunused-but-set-variable] 2022-01-18T17:29:52,379 15834 | int __pyx_t_15; 2022-01-18T17:29:52,379 | ^~~~~~~~~~ 2022-01-18T17:30:37,088 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o -L/usr/lib -o build/lib.linux-armv7l-3.9/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-39-arm-linux-gnueabihf.so 2022-01-18T17:30:37,501 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/algorithm.c -o build/temp.linux-armv7l-3.9/glycopeptidepy/_c/algorithm.o 2022-01-18T17:30:56,749 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/glycopeptidepy/_c/algorithm.o -L/usr/lib -o build/lib.linux-armv7l-3.9/glycopeptidepy/_c/algorithm.cpython-39-arm-linux-gnueabihf.so 2022-01-18T17:30:57,061 running install 2022-01-18T17:30:57,124 running install_lib 2022-01-18T17:30:57,131 creating build/bdist.linux-armv7l 2022-01-18T17:30:57,132 creating build/bdist.linux-armv7l/wheel 2022-01-18T17:30:57,135 creating build/bdist.linux-armv7l/wheel/glycopeptidepy 2022-01-18T17:30:57,138 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-01-18T17:30:57,394 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-01-18T17:30:57,620 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-01-18T17:30:57,807 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-01-18T17:30:58,349 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-01-18T17:30:58,398 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2022-01-18T17:30:58,409 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2022-01-18T17:30:58,452 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2022-01-18T17:30:58,475 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-01-18T17:30:58,498 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2022-01-18T17:30:58,524 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2022-01-18T17:30:58,649 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2022-01-18T17:30:58,669 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2022-01-18T17:30:58,705 running install_egg_info 2022-01-18T17:30:58,724 Copying glycopeptidepy.egg-info to build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.14-py3.9.egg-info 2022-01-18T17:30:58,749 running install_scripts 2022-01-18T17:31:07,101 Building wheel for glycopeptidepy (pyproject.toml): finished with status 'done' 2022-01-18T17:31:07,363 Created wheel for glycopeptidepy: filename=glycopeptidepy-0.0.14-cp39-cp39-linux_armv7l.whl size=4925566 sha256=673f25f64d565aea8a7d1358246f05a6d2f5c4344d4fa7df09a583cb8de2a5c7 2022-01-18T17:31:07,364 Stored in directory: /tmp/pip-ephem-wheel-cache-46kqjvvp/wheels/4b/61/a5/c7333e4e84e13932aa11c5fb484d28b53f90df100d128cfba2 2022-01-18T17:31:07,399 Successfully built glycopeptidepy 2022-01-18T17:31:07,749 Removed build tracker: '/tmp/pip-req-tracker-z537y4lx'