2022-01-25T09:33:58,222 Created temporary directory: /tmp/pip-ephem-wheel-cache-o7a0ocl0
2022-01-25T09:33:58,227 Created temporary directory: /tmp/pip-req-tracker-0dkodz2g
2022-01-25T09:33:58,228 Initialized build tracking at /tmp/pip-req-tracker-0dkodz2g
2022-01-25T09:33:58,228 Created build tracker: /tmp/pip-req-tracker-0dkodz2g
2022-01-25T09:33:58,228 Entered build tracker: /tmp/pip-req-tracker-0dkodz2g
2022-01-25T09:33:58,230 Created temporary directory: /tmp/pip-wheel-s4wpo9n6
2022-01-25T09:33:58,296 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-01-25T09:33:58,302 2 location(s) to search for versions of capice:
2022-01-25T09:33:58,302 * https://pypi.org/simple/capice/
2022-01-25T09:33:58,302 * https://www.piwheels.org/simple/capice/
2022-01-25T09:33:58,303 Fetching project page and analyzing links: https://pypi.org/simple/capice/
2022-01-25T09:33:58,304 Getting page https://pypi.org/simple/capice/
2022-01-25T09:33:58,307 Found index url https://pypi.org/simple
2022-01-25T09:33:58,508   Found link https://files.pythonhosted.org/packages/2b/cf/eeb11d53ea46d9463d108113249f8a5b8c3023b3822835fd2579c3351924/capice-3.0.0rc0.tar.gz#sha256=580f1298bafd091d86b5ded841588032f72e40035de04a7ec5fc1516c9edc2b2 (from https://pypi.org/simple/capice/) (requires-python:>=3.7), version: 3.0.0rc0
2022-01-25T09:33:58,510   Found link https://files.pythonhosted.org/packages/c9/09/fdf73572fc6b25f60b4a5b2729454b1560abff6dd9f7907f45d86bd0ec88/capice-3.0.0rc1.tar.gz#sha256=b5eb8501028078b58b078728cb5927d30f736dec35d8d17784807fb18bece558 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc1
2022-01-25T09:33:58,511 Fetching project page and analyzing links: https://www.piwheels.org/simple/capice/
2022-01-25T09:33:58,511 Getting page https://www.piwheels.org/simple/capice/
2022-01-25T09:33:58,513 Found index url https://www.piwheels.org/simple
2022-01-25T09:33:58,748   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc0-py3-none-any.whl#sha256=db7e870e65a264aa8b90e67c7ad2b62ed2662d850fac021fe20eafa759ccd21a (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.7)
2022-01-25T09:33:58,749 Skipping link: not a file: https://www.piwheels.org/simple/capice/
2022-01-25T09:33:58,749 Skipping link: not a file: https://pypi.org/simple/capice/
2022-01-25T09:33:58,794 Given no hashes to check 1 links for project 'capice': discarding no candidates
2022-01-25T09:33:58,835 Collecting capice==3.0.0rc1
2022-01-25T09:33:58,838   Created temporary directory: /tmp/pip-unpack-hnfg_wnj
2022-01-25T09:33:59,059   Downloading capice-3.0.0rc1.tar.gz (32 kB)
2022-01-25T09:33:59,334   Added capice==3.0.0rc1 from https://files.pythonhosted.org/packages/c9/09/fdf73572fc6b25f60b4a5b2729454b1560abff6dd9f7907f45d86bd0ec88/capice-3.0.0rc1.tar.gz#sha256=b5eb8501028078b58b078728cb5927d30f736dec35d8d17784807fb18bece558 to build tracker '/tmp/pip-req-tracker-0dkodz2g'
2022-01-25T09:33:59,336   Running setup.py (path:/tmp/pip-wheel-s4wpo9n6/capice_ecb980099b884f3e91599edae199e993/setup.py) egg_info for package capice
2022-01-25T09:33:59,337   Created temporary directory: /tmp/pip-pip-egg-info-obe1whjb
2022-01-25T09:33:59,338   Preparing metadata (setup.py): started
2022-01-25T09:33:59,339   Running command python setup.py egg_info
2022-01-25T09:34:01,200   running egg_info
2022-01-25T09:34:01,205   creating /tmp/pip-pip-egg-info-obe1whjb/capice.egg-info
2022-01-25T09:34:01,221   writing manifest file '/tmp/pip-pip-egg-info-obe1whjb/capice.egg-info/SOURCES.txt'
2022-01-25T09:34:01,234   package init file 'src/molgenis/__init__.py' not found (or not a regular file)
2022-01-25T09:34:01,262   writing manifest file '/tmp/pip-pip-egg-info-obe1whjb/capice.egg-info/SOURCES.txt'
2022-01-25T09:34:01,381   Preparing metadata (setup.py): finished with status 'done'
2022-01-25T09:34:01,391   Source in /tmp/pip-wheel-s4wpo9n6/capice_ecb980099b884f3e91599edae199e993 has version 3.0.0rc1, which satisfies requirement capice==3.0.0rc1 from https://files.pythonhosted.org/packages/c9/09/fdf73572fc6b25f60b4a5b2729454b1560abff6dd9f7907f45d86bd0ec88/capice-3.0.0rc1.tar.gz#sha256=b5eb8501028078b58b078728cb5927d30f736dec35d8d17784807fb18bece558
2022-01-25T09:34:01,393   Removed capice==3.0.0rc1 from https://files.pythonhosted.org/packages/c9/09/fdf73572fc6b25f60b4a5b2729454b1560abff6dd9f7907f45d86bd0ec88/capice-3.0.0rc1.tar.gz#sha256=b5eb8501028078b58b078728cb5927d30f736dec35d8d17784807fb18bece558 from build tracker '/tmp/pip-req-tracker-0dkodz2g'
2022-01-25T09:34:01,407 Created temporary directory: /tmp/pip-unpack-gavhtih0
2022-01-25T09:34:01,408 Building wheels for collected packages: capice
2022-01-25T09:34:01,416   Created temporary directory: /tmp/pip-wheel-hf4cr9fe
2022-01-25T09:34:01,417   Building wheel for capice (setup.py): started
2022-01-25T09:34:01,418   Destination directory: /tmp/pip-wheel-hf4cr9fe
2022-01-25T09:34:01,418   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-s4wpo9n6/capice_ecb980099b884f3e91599edae199e993/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-s4wpo9n6/capice_ecb980099b884f3e91599edae199e993/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-hf4cr9fe
2022-01-25T09:34:03,305   running bdist_wheel
2022-01-25T09:34:03,698   running build
2022-01-25T09:34:03,699   running build_py
2022-01-25T09:34:03,703   package init file 'src/molgenis/__init__.py' not found (or not a regular file)
2022-01-25T09:34:03,708   creating build
2022-01-25T09:34:03,709   creating build/lib
2022-01-25T09:34:03,710   creating build/lib/molgenis
2022-01-25T09:34:03,711   creating build/lib/molgenis/capice
2022-01-25T09:34:03,713   copying src/molgenis/capice/main_predict.py -> build/lib/molgenis/capice
2022-01-25T09:34:03,717   copying src/molgenis/capice/main_train.py -> build/lib/molgenis/capice
2022-01-25T09:34:03,721   copying src/molgenis/capice/__version__.py -> build/lib/molgenis/capice
2022-01-25T09:34:03,724   copying src/molgenis/capice/main_capice.py -> build/lib/molgenis/capice
2022-01-25T09:34:03,728   copying src/molgenis/capice/__init__.py -> build/lib/molgenis/capice
2022-01-25T09:34:03,730   copying src/molgenis/capice/capice.py -> build/lib/molgenis/capice
2022-01-25T09:34:03,735   creating build/lib/molgenis/capice/utilities
2022-01-25T09:34:03,737   copying src/molgenis/capice/utilities/predictor.py -> build/lib/molgenis/capice/utilities
2022-01-25T09:34:03,740   copying src/molgenis/capice/utilities/class_suggestor.py -> build/lib/molgenis/capice/utilities
2022-01-25T09:34:03,744   copying src/molgenis/capice/utilities/custom_logging_filter.py -> build/lib/molgenis/capice/utilities
2022-01-25T09:34:03,747   copying src/molgenis/capice/utilities/preprocessor.py -> build/lib/molgenis/capice/utilities
2022-01-25T09:34:03,751   copying src/molgenis/capice/utilities/load_file_postprocessor.py -> build/lib/molgenis/capice/utilities
2022-01-25T09:34:03,755   copying src/molgenis/capice/utilities/dynamic_loader.py -> build/lib/molgenis/capice/utilities
2022-01-25T09:34:03,760   copying src/molgenis/capice/utilities/capice_imputing.py -> build/lib/molgenis/capice/utilities
2022-01-25T09:34:03,763   copying src/molgenis/capice/utilities/input_processor.py -> build/lib/molgenis/capice/utilities
2022-01-25T09:34:03,767   copying src/molgenis/capice/utilities/enums.py -> build/lib/molgenis/capice/utilities
2022-01-25T09:34:03,772   copying src/molgenis/capice/utilities/input_parser.py -> build/lib/molgenis/capice/utilities
2022-01-25T09:34:03,775   copying src/molgenis/capice/utilities/__init__.py -> build/lib/molgenis/capice/utilities
2022-01-25T09:34:03,779   copying src/molgenis/capice/utilities/manual_vep_processor.py -> build/lib/molgenis/capice/utilities
2022-01-25T09:34:03,784   creating build/lib/molgenis/capice/validators
2022-01-25T09:34:03,786   copying src/molgenis/capice/validators/post_vep_processing_validator.py -> build/lib/molgenis/capice/validators
2022-01-25T09:34:03,790   copying src/molgenis/capice/validators/post_file_parse_validator.py -> build/lib/molgenis/capice/validators
2022-01-25T09:34:03,793   copying src/molgenis/capice/validators/input_validator.py -> build/lib/molgenis/capice/validators
2022-01-25T09:34:03,797   copying src/molgenis/capice/validators/__init__.py -> build/lib/molgenis/capice/validators
2022-01-25T09:34:03,799   copying src/molgenis/capice/validators/property_type_validator.py -> build/lib/molgenis/capice/validators
2022-01-25T09:34:03,805   creating build/lib/molgenis/capice/core
2022-01-25T09:34:03,807   copying src/molgenis/capice/core/capice_manager.py -> build/lib/molgenis/capice/core
2022-01-25T09:34:03,811   copying src/molgenis/capice/core/logger.py -> build/lib/molgenis/capice/core
2022-01-25T09:34:03,815   copying src/molgenis/capice/core/args_handler.py -> build/lib/molgenis/capice/core
2022-01-25T09:34:03,818   copying src/molgenis/capice/core/__init__.py -> build/lib/molgenis/capice/core
2022-01-25T09:34:03,821   copying src/molgenis/capice/core/capice_exporter.py -> build/lib/molgenis/capice/core
2022-01-25T09:34:03,826   creating build/lib/molgenis/capice/cli
2022-01-25T09:34:03,828   copying src/molgenis/capice/cli/args_handler_parent.py -> build/lib/molgenis/capice/cli
2022-01-25T09:34:03,832   copying src/molgenis/capice/cli/args_handler_predict.py -> build/lib/molgenis/capice/cli
2022-01-25T09:34:03,836   copying src/molgenis/capice/cli/args_handler_train.py -> build/lib/molgenis/capice/cli
2022-01-25T09:34:03,839   copying src/molgenis/capice/cli/__init__.py -> build/lib/molgenis/capice/cli
2022-01-25T09:34:03,844   creating build/lib/molgenis/capice/vep
2022-01-25T09:34:03,846   copying src/molgenis/capice/vep/motif_name.py -> build/lib/molgenis/capice/vep
2022-01-25T09:34:03,850   copying src/molgenis/capice/vep/cds_position.py -> build/lib/molgenis/capice/vep
2022-01-25T09:34:03,854   copying src/molgenis/capice/vep/protein_position.py -> build/lib/molgenis/capice/vep
2022-01-25T09:34:03,858   copying src/molgenis/capice/vep/length.py -> build/lib/molgenis/capice/vep
2022-01-25T09:34:03,861   copying src/molgenis/capice/vep/poly_phen.py -> build/lib/molgenis/capice/vep
2022-01-25T09:34:03,865   copying src/molgenis/capice/vep/cons_detail.py -> build/lib/molgenis/capice/vep
2022-01-25T09:34:03,868   copying src/molgenis/capice/vep/domain.py -> build/lib/molgenis/capice/vep
2022-01-25T09:34:03,872   copying src/molgenis/capice/vep/sift.py -> build/lib/molgenis/capice/vep
2022-01-25T09:34:03,875   copying src/molgenis/capice/vep/seq.py -> build/lib/molgenis/capice/vep
2022-01-25T09:34:03,879   copying src/molgenis/capice/vep/template.py -> build/lib/molgenis/capice/vep
2022-01-25T09:34:03,882   copying src/molgenis/capice/vep/motif_ehi_pos.py -> build/lib/molgenis/capice/vep
2022-01-25T09:34:03,885   copying src/molgenis/capice/vep/template_position.py -> build/lib/molgenis/capice/vep
2022-01-25T09:34:03,888   copying src/molgenis/capice/vep/template_sift_polyphen.py -> build/lib/molgenis/capice/vep
2022-01-25T09:34:03,892   copying src/molgenis/capice/vep/motif_e_score_change.py -> build/lib/molgenis/capice/vep
2022-01-25T09:34:03,895   copying src/molgenis/capice/vep/amino_acids.py -> build/lib/molgenis/capice/vep
2022-01-25T09:34:03,898   copying src/molgenis/capice/vep/cdna_position.py -> build/lib/molgenis/capice/vep
2022-01-25T09:34:03,901   copying src/molgenis/capice/vep/__init__.py -> build/lib/molgenis/capice/vep
2022-01-25T09:34:03,904   copying src/molgenis/capice/vep/type.py -> build/lib/molgenis/capice/vep
2022-01-25T09:34:03,930   /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-01-25T09:34:03,930     warnings.warn(
2022-01-25T09:34:03,935   running install
2022-01-25T09:34:03,997   running install_lib
2022-01-25T09:34:04,004   creating build/bdist.linux-armv7l
2022-01-25T09:34:04,005   creating build/bdist.linux-armv7l/wheel
2022-01-25T09:34:04,008   creating build/bdist.linux-armv7l/wheel/molgenis
2022-01-25T09:34:04,011   creating build/bdist.linux-armv7l/wheel/molgenis/capice
2022-01-25T09:34:04,014   creating build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-01-25T09:34:04,065   creating build/bdist.linux-armv7l/wheel/molgenis/capice/validators
2022-01-25T09:34:04,087   creating build/bdist.linux-armv7l/wheel/molgenis/capice/core
2022-01-25T09:34:04,106   creating build/bdist.linux-armv7l/wheel/molgenis/capice/cli
2022-01-25T09:34:04,120   creating build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-01-25T09:34:04,184   running install_egg_info
2022-01-25T09:34:04,227   running egg_info
2022-01-25T09:34:04,276   writing manifest file 'src/capice.egg-info/SOURCES.txt'
2022-01-25T09:34:04,279   Copying src/capice.egg-info to build/bdist.linux-armv7l/wheel/capice-3.0.0rc1-py3.9.egg-info
2022-01-25T09:34:04,301   running install_scripts
2022-01-25T09:34:04,829   Building wheel for capice (setup.py): finished with status 'done'
2022-01-25T09:34:04,835   Created wheel for capice: filename=capice-3.0.0rc1-py3-none-any.whl size=49003 sha256=1f1a3830a436ef9f9f34370a93dea81e04b8e4761fd8ecae8ce10955c1dddac2
2022-01-25T09:34:04,835   Stored in directory: /tmp/pip-ephem-wheel-cache-o7a0ocl0/wheels/b5/6b/96/3bf71f3f5c436c783ae8e40068471eff05338f927b5354ee70
2022-01-25T09:34:04,864 Successfully built capice
2022-01-25T09:34:04,873 Removed build tracker: '/tmp/pip-req-tracker-0dkodz2g'