2022-01-27T09:15:52,398 Created temporary directory: /tmp/pip-ephem-wheel-cache-eymaeqez
2022-01-27T09:15:52,403 Created temporary directory: /tmp/pip-req-tracker-visq0j4b
2022-01-27T09:15:52,404 Initialized build tracking at /tmp/pip-req-tracker-visq0j4b
2022-01-27T09:15:52,404 Created build tracker: /tmp/pip-req-tracker-visq0j4b
2022-01-27T09:15:52,404 Entered build tracker: /tmp/pip-req-tracker-visq0j4b
2022-01-27T09:15:52,405 Created temporary directory: /tmp/pip-wheel-u732bg4e
2022-01-27T09:15:52,470 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-01-27T09:15:52,476 2 location(s) to search for versions of capice:
2022-01-27T09:15:52,476 * https://pypi.org/simple/capice/
2022-01-27T09:15:52,476 * https://www.piwheels.org/simple/capice/
2022-01-27T09:15:52,477 Fetching project page and analyzing links: https://pypi.org/simple/capice/
2022-01-27T09:15:52,478 Getting page https://pypi.org/simple/capice/
2022-01-27T09:15:52,481 Found index url https://pypi.org/simple
2022-01-27T09:15:52,685   Found link https://files.pythonhosted.org/packages/2b/cf/eeb11d53ea46d9463d108113249f8a5b8c3023b3822835fd2579c3351924/capice-3.0.0rc0.tar.gz#sha256=580f1298bafd091d86b5ded841588032f72e40035de04a7ec5fc1516c9edc2b2 (from https://pypi.org/simple/capice/) (requires-python:>=3.7), version: 3.0.0rc0
2022-01-27T09:15:52,687   Found link https://files.pythonhosted.org/packages/c9/09/fdf73572fc6b25f60b4a5b2729454b1560abff6dd9f7907f45d86bd0ec88/capice-3.0.0rc1.tar.gz#sha256=b5eb8501028078b58b078728cb5927d30f736dec35d8d17784807fb18bece558 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc1
2022-01-27T09:15:52,688   Found link https://files.pythonhosted.org/packages/93/94/a86e20a50a6ae585d21896e5348b2ee157c3a7f49a22e53a014884d069d1/capice-3.0.0rc2.tar.gz#sha256=fd1c7a04ef0b10576b9843cecc7a188c20ae39edb4ed4a8fec27c8abc13d23f4 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc2
2022-01-27T09:15:52,689 Fetching project page and analyzing links: https://www.piwheels.org/simple/capice/
2022-01-27T09:15:52,689 Getting page https://www.piwheels.org/simple/capice/
2022-01-27T09:15:52,691 Found index url https://www.piwheels.org/simple
2022-01-27T09:15:52,907   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc0-py3-none-any.whl#sha256=db7e870e65a264aa8b90e67c7ad2b62ed2662d850fac021fe20eafa759ccd21a (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.7)
2022-01-27T09:15:52,907   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc1-py3-none-any.whl#sha256=1f1a3830a436ef9f9f34370a93dea81e04b8e4761fd8ecae8ce10955c1dddac2 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-01-27T09:15:52,908 Skipping link: not a file: https://www.piwheels.org/simple/capice/
2022-01-27T09:15:52,908 Skipping link: not a file: https://pypi.org/simple/capice/
2022-01-27T09:15:52,953 Given no hashes to check 1 links for project 'capice': discarding no candidates
2022-01-27T09:15:52,995 Collecting capice==3.0.0rc2
2022-01-27T09:15:52,998   Created temporary directory: /tmp/pip-unpack-bo2egjh1
2022-01-27T09:15:53,232   Downloading capice-3.0.0rc2.tar.gz (32 kB)
2022-01-27T09:15:53,494   Added capice==3.0.0rc2 from https://files.pythonhosted.org/packages/93/94/a86e20a50a6ae585d21896e5348b2ee157c3a7f49a22e53a014884d069d1/capice-3.0.0rc2.tar.gz#sha256=fd1c7a04ef0b10576b9843cecc7a188c20ae39edb4ed4a8fec27c8abc13d23f4 to build tracker '/tmp/pip-req-tracker-visq0j4b'
2022-01-27T09:15:53,495   Running setup.py (path:/tmp/pip-wheel-u732bg4e/capice_47320a2519ba4c40b4f687c449b8c51a/setup.py) egg_info for package capice
2022-01-27T09:15:53,496   Created temporary directory: /tmp/pip-pip-egg-info-_d0gx4qh
2022-01-27T09:15:53,497   Preparing metadata (setup.py): started
2022-01-27T09:15:53,498   Running command python setup.py egg_info
2022-01-27T09:15:55,393   running egg_info
2022-01-27T09:15:55,397   creating /tmp/pip-pip-egg-info-_d0gx4qh/capice.egg-info
2022-01-27T09:15:55,412   writing manifest file '/tmp/pip-pip-egg-info-_d0gx4qh/capice.egg-info/SOURCES.txt'
2022-01-27T09:15:55,425   package init file 'src/molgenis/__init__.py' not found (or not a regular file)
2022-01-27T09:15:55,453   writing manifest file '/tmp/pip-pip-egg-info-_d0gx4qh/capice.egg-info/SOURCES.txt'
2022-01-27T09:15:55,572   Preparing metadata (setup.py): finished with status 'done'
2022-01-27T09:15:55,582   Source in /tmp/pip-wheel-u732bg4e/capice_47320a2519ba4c40b4f687c449b8c51a has version 3.0.0rc2, which satisfies requirement capice==3.0.0rc2 from https://files.pythonhosted.org/packages/93/94/a86e20a50a6ae585d21896e5348b2ee157c3a7f49a22e53a014884d069d1/capice-3.0.0rc2.tar.gz#sha256=fd1c7a04ef0b10576b9843cecc7a188c20ae39edb4ed4a8fec27c8abc13d23f4
2022-01-27T09:15:55,584   Removed capice==3.0.0rc2 from https://files.pythonhosted.org/packages/93/94/a86e20a50a6ae585d21896e5348b2ee157c3a7f49a22e53a014884d069d1/capice-3.0.0rc2.tar.gz#sha256=fd1c7a04ef0b10576b9843cecc7a188c20ae39edb4ed4a8fec27c8abc13d23f4 from build tracker '/tmp/pip-req-tracker-visq0j4b'
2022-01-27T09:15:55,598 Created temporary directory: /tmp/pip-unpack-rk_gl31n
2022-01-27T09:15:55,599 Building wheels for collected packages: capice
2022-01-27T09:15:55,607   Created temporary directory: /tmp/pip-wheel-1v9dw94d
2022-01-27T09:15:55,607   Building wheel for capice (setup.py): started
2022-01-27T09:15:55,608   Destination directory: /tmp/pip-wheel-1v9dw94d
2022-01-27T09:15:55,609   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-u732bg4e/capice_47320a2519ba4c40b4f687c449b8c51a/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-u732bg4e/capice_47320a2519ba4c40b4f687c449b8c51a/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-1v9dw94d
2022-01-27T09:15:57,498   running bdist_wheel
2022-01-27T09:15:57,892   running build
2022-01-27T09:15:57,892   running build_py
2022-01-27T09:15:57,897   package init file 'src/molgenis/__init__.py' not found (or not a regular file)
2022-01-27T09:15:57,901   creating build
2022-01-27T09:15:57,902   creating build/lib
2022-01-27T09:15:57,903   creating build/lib/molgenis
2022-01-27T09:15:57,904   creating build/lib/molgenis/capice
2022-01-27T09:15:57,906   copying src/molgenis/capice/main_predict.py -> build/lib/molgenis/capice
2022-01-27T09:15:57,909   copying src/molgenis/capice/main_train.py -> build/lib/molgenis/capice
2022-01-27T09:15:57,913   copying src/molgenis/capice/__version__.py -> build/lib/molgenis/capice
2022-01-27T09:15:57,916   copying src/molgenis/capice/main_capice.py -> build/lib/molgenis/capice
2022-01-27T09:15:57,920   copying src/molgenis/capice/__init__.py -> build/lib/molgenis/capice
2022-01-27T09:15:57,923   copying src/molgenis/capice/capice.py -> build/lib/molgenis/capice
2022-01-27T09:15:57,928   creating build/lib/molgenis/capice/utilities
2022-01-27T09:15:57,930   copying src/molgenis/capice/utilities/predictor.py -> build/lib/molgenis/capice/utilities
2022-01-27T09:15:57,933   copying src/molgenis/capice/utilities/class_suggestor.py -> build/lib/molgenis/capice/utilities
2022-01-27T09:15:57,937   copying src/molgenis/capice/utilities/custom_logging_filter.py -> build/lib/molgenis/capice/utilities
2022-01-27T09:15:57,940   copying src/molgenis/capice/utilities/preprocessor.py -> build/lib/molgenis/capice/utilities
2022-01-27T09:15:57,944   copying src/molgenis/capice/utilities/load_file_postprocessor.py -> build/lib/molgenis/capice/utilities
2022-01-27T09:15:57,947   copying src/molgenis/capice/utilities/dynamic_loader.py -> build/lib/molgenis/capice/utilities
2022-01-27T09:15:57,951   copying src/molgenis/capice/utilities/capice_imputing.py -> build/lib/molgenis/capice/utilities
2022-01-27T09:15:57,955   copying src/molgenis/capice/utilities/input_processor.py -> build/lib/molgenis/capice/utilities
2022-01-27T09:15:57,958   copying src/molgenis/capice/utilities/enums.py -> build/lib/molgenis/capice/utilities
2022-01-27T09:15:57,961   copying src/molgenis/capice/utilities/input_parser.py -> build/lib/molgenis/capice/utilities
2022-01-27T09:15:57,965   copying src/molgenis/capice/utilities/__init__.py -> build/lib/molgenis/capice/utilities
2022-01-27T09:15:57,968   copying src/molgenis/capice/utilities/manual_vep_processor.py -> build/lib/molgenis/capice/utilities
2022-01-27T09:15:57,973   creating build/lib/molgenis/capice/validators
2022-01-27T09:15:57,975   copying src/molgenis/capice/validators/post_vep_processing_validator.py -> build/lib/molgenis/capice/validators
2022-01-27T09:15:57,978   copying src/molgenis/capice/validators/post_file_parse_validator.py -> build/lib/molgenis/capice/validators
2022-01-27T09:15:57,982   copying src/molgenis/capice/validators/input_validator.py -> build/lib/molgenis/capice/validators
2022-01-27T09:15:57,985   copying src/molgenis/capice/validators/__init__.py -> build/lib/molgenis/capice/validators
2022-01-27T09:15:57,987   copying src/molgenis/capice/validators/property_type_validator.py -> build/lib/molgenis/capice/validators
2022-01-27T09:15:57,992   creating build/lib/molgenis/capice/core
2022-01-27T09:15:57,994   copying src/molgenis/capice/core/capice_manager.py -> build/lib/molgenis/capice/core
2022-01-27T09:15:57,998   copying src/molgenis/capice/core/logger.py -> build/lib/molgenis/capice/core
2022-01-27T09:15:58,002   copying src/molgenis/capice/core/args_handler.py -> build/lib/molgenis/capice/core
2022-01-27T09:15:58,005   copying src/molgenis/capice/core/__init__.py -> build/lib/molgenis/capice/core
2022-01-27T09:15:58,007   copying src/molgenis/capice/core/capice_exporter.py -> build/lib/molgenis/capice/core
2022-01-27T09:15:58,012   creating build/lib/molgenis/capice/cli
2022-01-27T09:15:58,014   copying src/molgenis/capice/cli/args_handler_parent.py -> build/lib/molgenis/capice/cli
2022-01-27T09:15:58,017   copying src/molgenis/capice/cli/args_handler_predict.py -> build/lib/molgenis/capice/cli
2022-01-27T09:15:58,021   copying src/molgenis/capice/cli/args_handler_train.py -> build/lib/molgenis/capice/cli
2022-01-27T09:15:58,024   copying src/molgenis/capice/cli/__init__.py -> build/lib/molgenis/capice/cli
2022-01-27T09:15:58,030   creating build/lib/molgenis/capice/vep
2022-01-27T09:15:58,031   copying src/molgenis/capice/vep/motif_name.py -> build/lib/molgenis/capice/vep
2022-01-27T09:15:58,035   copying src/molgenis/capice/vep/cds_position.py -> build/lib/molgenis/capice/vep
2022-01-27T09:15:58,038   copying src/molgenis/capice/vep/protein_position.py -> build/lib/molgenis/capice/vep
2022-01-27T09:15:58,041   copying src/molgenis/capice/vep/length.py -> build/lib/molgenis/capice/vep
2022-01-27T09:15:58,044   copying src/molgenis/capice/vep/poly_phen.py -> build/lib/molgenis/capice/vep
2022-01-27T09:15:58,047   copying src/molgenis/capice/vep/cons_detail.py -> build/lib/molgenis/capice/vep
2022-01-27T09:15:58,051   copying src/molgenis/capice/vep/domain.py -> build/lib/molgenis/capice/vep
2022-01-27T09:15:58,054   copying src/molgenis/capice/vep/sift.py -> build/lib/molgenis/capice/vep
2022-01-27T09:15:58,057   copying src/molgenis/capice/vep/consequence.py -> build/lib/molgenis/capice/vep
2022-01-27T09:15:58,061   copying src/molgenis/capice/vep/seq.py -> build/lib/molgenis/capice/vep
2022-01-27T09:15:58,064   copying src/molgenis/capice/vep/template.py -> build/lib/molgenis/capice/vep
2022-01-27T09:15:58,067   copying src/molgenis/capice/vep/motif_ehi_pos.py -> build/lib/molgenis/capice/vep
2022-01-27T09:15:58,070   copying src/molgenis/capice/vep/template_position.py -> build/lib/molgenis/capice/vep
2022-01-27T09:15:58,074   copying src/molgenis/capice/vep/template_sift_polyphen.py -> build/lib/molgenis/capice/vep
2022-01-27T09:15:58,077   copying src/molgenis/capice/vep/motif_e_score_change.py -> build/lib/molgenis/capice/vep
2022-01-27T09:15:58,080   copying src/molgenis/capice/vep/amino_acids.py -> build/lib/molgenis/capice/vep
2022-01-27T09:15:58,084   copying src/molgenis/capice/vep/cdna_position.py -> build/lib/molgenis/capice/vep
2022-01-27T09:15:58,087   copying src/molgenis/capice/vep/__init__.py -> build/lib/molgenis/capice/vep
2022-01-27T09:15:58,089   copying src/molgenis/capice/vep/type.py -> build/lib/molgenis/capice/vep
2022-01-27T09:15:58,115   /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-01-27T09:15:58,115     warnings.warn(
2022-01-27T09:15:58,120   running install
2022-01-27T09:15:58,184   running install_lib
2022-01-27T09:15:58,191   creating build/bdist.linux-armv7l
2022-01-27T09:15:58,191   creating build/bdist.linux-armv7l/wheel
2022-01-27T09:15:58,194   creating build/bdist.linux-armv7l/wheel/molgenis
2022-01-27T09:15:58,197   creating build/bdist.linux-armv7l/wheel/molgenis/capice
2022-01-27T09:15:58,200   creating build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-01-27T09:15:58,251   creating build/bdist.linux-armv7l/wheel/molgenis/capice/validators
2022-01-27T09:15:58,273   creating build/bdist.linux-armv7l/wheel/molgenis/capice/core
2022-01-27T09:15:58,292   creating build/bdist.linux-armv7l/wheel/molgenis/capice/cli
2022-01-27T09:15:58,308   creating build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-01-27T09:15:58,376   running install_egg_info
2022-01-27T09:15:58,419   running egg_info
2022-01-27T09:15:58,467   writing manifest file 'src/capice.egg-info/SOURCES.txt'
2022-01-27T09:15:58,470   Copying src/capice.egg-info to build/bdist.linux-armv7l/wheel/capice-3.0.0rc2-py3.9.egg-info
2022-01-27T09:15:58,492   running install_scripts
2022-01-27T09:15:59,018   Building wheel for capice (setup.py): finished with status 'done'
2022-01-27T09:15:59,024   Created wheel for capice: filename=capice-3.0.0rc2-py3-none-any.whl size=50023 sha256=f67afcd30fc1b242beb1b3631528be28745036179d8f8ff75fdd07d13c163206
2022-01-27T09:15:59,025   Stored in directory: /tmp/pip-ephem-wheel-cache-eymaeqez/wheels/f8/bd/12/2ee581ba5ecb417f89bfe05acd24e50c36a1d3c7edf1a66e6e
2022-01-27T09:15:59,054 Successfully built capice
2022-01-27T09:15:59,062 Removed build tracker: '/tmp/pip-req-tracker-visq0j4b'