2022-01-28T19:49:20,900 Created temporary directory: /tmp/pip-ephem-wheel-cache-0mzamyn1
2022-01-28T19:49:20,906 Created temporary directory: /tmp/pip-req-tracker-kfg2z8xa
2022-01-28T19:49:20,906 Initialized build tracking at /tmp/pip-req-tracker-kfg2z8xa
2022-01-28T19:49:20,907 Created build tracker: /tmp/pip-req-tracker-kfg2z8xa
2022-01-28T19:49:20,907 Entered build tracker: /tmp/pip-req-tracker-kfg2z8xa
2022-01-28T19:49:20,908 Created temporary directory: /tmp/pip-wheel-vkwgsyih
2022-01-28T19:49:20,968 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-01-28T19:49:20,974 2 location(s) to search for versions of pyvcf3:
2022-01-28T19:49:20,974 * https://pypi.org/simple/pyvcf3/
2022-01-28T19:49:20,974 * https://www.piwheels.org/simple/pyvcf3/
2022-01-28T19:49:20,975 Fetching project page and analyzing links: https://pypi.org/simple/pyvcf3/
2022-01-28T19:49:20,976 Getting page https://pypi.org/simple/pyvcf3/
2022-01-28T19:49:20,979 Found index url https://pypi.org/simple
2022-01-28T19:49:21,175   Found link https://files.pythonhosted.org/packages/af/3a/d3c816c29dc176177067160069ac049a4bbd3c0feb96a41380b6d0e9d4bf/PyVCF3-1.0.0.tar.gz#sha256=7368ec0bf51e8772b2a18c25ab3e7567a3391ae3762d0d6099232a3f8fc0f2b3 (from https://pypi.org/simple/pyvcf3/), version: 1.0.0
2022-01-28T19:49:21,176 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyvcf3/
2022-01-28T19:49:21,177 Getting page https://www.piwheels.org/simple/pyvcf3/
2022-01-28T19:49:21,179 Found index url https://www.piwheels.org/simple
2022-01-28T19:49:21,396   Skipping link: No binaries permitted for pyvcf3: https://www.piwheels.org/simple/pyvcf3/PyVCF3-1.0.0-cp35-cp35m-linux_armv6l.whl#sha256=804e89f835d7937364092d5d747f44095a51364a56661627f699c8a406722cfb (from https://www.piwheels.org/simple/pyvcf3/)
2022-01-28T19:49:21,397   Skipping link: No binaries permitted for pyvcf3: https://www.piwheels.org/simple/pyvcf3/PyVCF3-1.0.0-cp35-cp35m-linux_armv7l.whl#sha256=804e89f835d7937364092d5d747f44095a51364a56661627f699c8a406722cfb (from https://www.piwheels.org/simple/pyvcf3/)
2022-01-28T19:49:21,397   Skipping link: No binaries permitted for pyvcf3: https://www.piwheels.org/simple/pyvcf3/PyVCF3-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=197b00635133c0013e911b217a7bb40ea409deab499ca14890971576de63ecfe (from https://www.piwheels.org/simple/pyvcf3/)
2022-01-28T19:49:21,398   Skipping link: No binaries permitted for pyvcf3: https://www.piwheels.org/simple/pyvcf3/PyVCF3-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=197b00635133c0013e911b217a7bb40ea409deab499ca14890971576de63ecfe (from https://www.piwheels.org/simple/pyvcf3/)
2022-01-28T19:49:21,398 Skipping link: not a file: https://www.piwheels.org/simple/pyvcf3/
2022-01-28T19:49:21,399 Skipping link: not a file: https://pypi.org/simple/pyvcf3/
2022-01-28T19:49:21,442 Given no hashes to check 1 links for project 'pyvcf3': discarding no candidates
2022-01-28T19:49:21,484 Collecting pyvcf3==1.0.0
2022-01-28T19:49:21,487   Created temporary directory: /tmp/pip-unpack-xf0ldlyz
2022-01-28T19:49:21,577   Downloading PyVCF3-1.0.0.tar.gz (38 kB)
2022-01-28T19:49:21,717   Added pyvcf3==1.0.0 from https://files.pythonhosted.org/packages/af/3a/d3c816c29dc176177067160069ac049a4bbd3c0feb96a41380b6d0e9d4bf/PyVCF3-1.0.0.tar.gz#sha256=7368ec0bf51e8772b2a18c25ab3e7567a3391ae3762d0d6099232a3f8fc0f2b3 to build tracker '/tmp/pip-req-tracker-kfg2z8xa'
2022-01-28T19:49:21,719   Running setup.py (path:/tmp/pip-wheel-vkwgsyih/pyvcf3_8fda391393cc4fb68546e39c8ed1b9d8/setup.py) egg_info for package pyvcf3
2022-01-28T19:49:21,720   Created temporary directory: /tmp/pip-pip-egg-info-4fks_psa
2022-01-28T19:49:21,721   Preparing metadata (setup.py): started
2022-01-28T19:49:21,721   Running command python setup.py egg_info
2022-01-28T19:49:23,787   running egg_info
2022-01-28T19:49:23,792   creating /tmp/pip-pip-egg-info-4fks_psa/PyVCF3.egg-info
2022-01-28T19:49:23,808   writing manifest file '/tmp/pip-pip-egg-info-4fks_psa/PyVCF3.egg-info/SOURCES.txt'
2022-01-28T19:49:23,858   writing manifest file '/tmp/pip-pip-egg-info-4fks_psa/PyVCF3.egg-info/SOURCES.txt'
2022-01-28T19:49:23,980   Preparing metadata (setup.py): finished with status 'done'
2022-01-28T19:49:23,988   Source in /tmp/pip-wheel-vkwgsyih/pyvcf3_8fda391393cc4fb68546e39c8ed1b9d8 has version 1.0.0, which satisfies requirement pyvcf3==1.0.0 from https://files.pythonhosted.org/packages/af/3a/d3c816c29dc176177067160069ac049a4bbd3c0feb96a41380b6d0e9d4bf/PyVCF3-1.0.0.tar.gz#sha256=7368ec0bf51e8772b2a18c25ab3e7567a3391ae3762d0d6099232a3f8fc0f2b3
2022-01-28T19:49:23,990   Removed pyvcf3==1.0.0 from https://files.pythonhosted.org/packages/af/3a/d3c816c29dc176177067160069ac049a4bbd3c0feb96a41380b6d0e9d4bf/PyVCF3-1.0.0.tar.gz#sha256=7368ec0bf51e8772b2a18c25ab3e7567a3391ae3762d0d6099232a3f8fc0f2b3 from build tracker '/tmp/pip-req-tracker-kfg2z8xa'
2022-01-28T19:49:23,999 Created temporary directory: /tmp/pip-unpack-4xojcl6e
2022-01-28T19:49:24,000 Building wheels for collected packages: pyvcf3
2022-01-28T19:49:24,008   Created temporary directory: /tmp/pip-wheel-0qxhqg72
2022-01-28T19:49:24,008   Building wheel for pyvcf3 (setup.py): started
2022-01-28T19:49:24,009   Destination directory: /tmp/pip-wheel-0qxhqg72
2022-01-28T19:49:24,010   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-vkwgsyih/pyvcf3_8fda391393cc4fb68546e39c8ed1b9d8/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-vkwgsyih/pyvcf3_8fda391393cc4fb68546e39c8ed1b9d8/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-0qxhqg72
2022-01-28T19:49:26,064   running bdist_wheel
2022-01-28T19:49:26,072   running build
2022-01-28T19:49:26,073   running build_py
2022-01-28T19:49:26,080   creating build
2022-01-28T19:49:26,081   creating build/lib.linux-armv7l-3.9
2022-01-28T19:49:26,082   creating build/lib.linux-armv7l-3.9/vcf
2022-01-28T19:49:26,084   copying vcf/parser.py -> build/lib.linux-armv7l-3.9/vcf
2022-01-28T19:49:26,090   copying vcf/__init__.py -> build/lib.linux-armv7l-3.9/vcf
2022-01-28T19:49:26,093   copying vcf/sample_filter.py -> build/lib.linux-armv7l-3.9/vcf
2022-01-28T19:49:26,096   copying vcf/filters.py -> build/lib.linux-armv7l-3.9/vcf
2022-01-28T19:49:26,100   copying vcf/model.py -> build/lib.linux-armv7l-3.9/vcf
2022-01-28T19:49:26,105   copying vcf/utils.py -> build/lib.linux-armv7l-3.9/vcf
2022-01-28T19:49:26,109   creating build/lib.linux-armv7l-3.9/vcf/test
2022-01-28T19:49:26,111   copying vcf/test/test_vcf.py -> build/lib.linux-armv7l-3.9/vcf/test
2022-01-28T19:49:26,119   copying vcf/test/__init__.py -> build/lib.linux-armv7l-3.9/vcf/test
2022-01-28T19:49:26,122   copying vcf/test/prof.py -> build/lib.linux-armv7l-3.9/vcf/test
2022-01-28T19:49:26,125   running egg_info
2022-01-28T19:49:26,201   writing manifest file 'PyVCF3.egg-info/SOURCES.txt'
2022-01-28T19:49:26,209   copying vcf/cparse.pyx -> build/lib.linux-armv7l-3.9/vcf
2022-01-28T19:49:26,216   running build_ext
2022-01-28T19:49:27,790   /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-vkwgsyih/pyvcf3_8fda391393cc4fb68546e39c8ed1b9d8/vcf/cparse.pyx
2022-01-28T19:49:27,790     tree = Parsing.p_module(s, pxd, full_module_name)
2022-01-28T19:49:27,868   warning: vcf/cparse.pyx:29:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
2022-01-28T19:49:27,869   warning: vcf/cparse.pyx:29:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
2022-01-28T19:49:27,869   warning: vcf/cparse.pyx:29:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
2022-01-28T19:49:27,870   warning: vcf/cparse.pyx:29:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
2022-01-28T19:49:28,272   creating build/temp.linux-armv7l-3.9
2022-01-28T19:49:28,272   creating build/temp.linux-armv7l-3.9/vcf
2022-01-28T19:49:28,274   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c vcf/cparse.c -o build/temp.linux-armv7l-3.9/vcf/cparse.o
2022-01-28T19:49:38,553   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/vcf/cparse.o -L/usr/lib -o build/lib.linux-armv7l-3.9/vcf/cparse.cpython-39-arm-linux-gnueabihf.so
2022-01-28T19:49:38,799   running build_scripts
2022-01-28T19:49:38,800   creating build/scripts-3.9
2022-01-28T19:49:38,823   /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-01-28T19:49:38,824     warnings.warn(
2022-01-28T19:49:38,828   running install
2022-01-28T19:49:38,890   running install_lib
2022-01-28T19:49:38,896   creating build/bdist.linux-armv7l
2022-01-28T19:49:38,897   creating build/bdist.linux-armv7l/wheel
2022-01-28T19:49:38,900   creating build/bdist.linux-armv7l/wheel/vcf
2022-01-28T19:49:38,929   creating build/bdist.linux-armv7l/wheel/vcf/test
2022-01-28T19:49:38,959   running install_egg_info
2022-01-28T19:49:38,976   Copying PyVCF3.egg-info to build/bdist.linux-armv7l/wheel/PyVCF3-1.0.0-py3.9.egg-info
2022-01-28T19:49:39,002   running install_scripts
2022-01-28T19:49:39,053   creating build/bdist.linux-armv7l/wheel/PyVCF3-1.0.0.data
2022-01-28T19:49:39,054   creating build/bdist.linux-armv7l/wheel/PyVCF3-1.0.0.data/scripts
2022-01-28T19:49:39,603   Building wheel for pyvcf3 (setup.py): finished with status 'done'
2022-01-28T19:49:39,612   Created wheel for pyvcf3: filename=PyVCF3-1.0.0-cp39-cp39-linux_armv7l.whl size=134258 sha256=c288b5b3f724d0924a6d4977216943aee43c7bf5c08cbf71303013c1b55b1cb0
2022-01-28T19:49:39,613   Stored in directory: /tmp/pip-ephem-wheel-cache-0mzamyn1/wheels/b2/74/8a/6c53e53145e8c3624c4b7a7895e7abaf29a78dadce57f22726
2022-01-28T19:49:39,635 Successfully built pyvcf3
2022-01-28T19:49:39,649 Removed build tracker: '/tmp/pip-req-tracker-kfg2z8xa'