2022-02-01T21:49:13,689 Created temporary directory: /tmp/pip-ephem-wheel-cache-h6tg5fxj
2022-02-01T21:49:13,696 Created temporary directory: /tmp/pip-req-tracker-rrgqmj_n
2022-02-01T21:49:13,697 Initialized build tracking at /tmp/pip-req-tracker-rrgqmj_n
2022-02-01T21:49:13,697 Created build tracker: /tmp/pip-req-tracker-rrgqmj_n
2022-02-01T21:49:13,697 Entered build tracker: /tmp/pip-req-tracker-rrgqmj_n
2022-02-01T21:49:13,699 Created temporary directory: /tmp/pip-wheel-f2jwzvwh
2022-02-01T21:49:13,759 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-02-01T21:49:13,762 2 location(s) to search for versions of apples:
2022-02-01T21:49:13,762 * https://pypi.org/simple/apples/
2022-02-01T21:49:13,762 * https://www.piwheels.org/simple/apples/
2022-02-01T21:49:13,763 Fetching project page and analyzing links: https://pypi.org/simple/apples/
2022-02-01T21:49:13,765 Getting page https://pypi.org/simple/apples/
2022-02-01T21:49:13,769 Found index url https://pypi.org/simple
2022-02-01T21:49:14,309   Found link https://files.pythonhosted.org/packages/a8/62/73af68231d768bcc781a2289e5c93b1b4060c1da888186a3cb4fc06f2b35/apples-1.2.1.tar.gz#sha256=7814a03ebcc2bd1afe51c7b90d43e068c84a6385b87462e62992ca8294ee9593 (from https://pypi.org/simple/apples/), version: 1.2.1
2022-02-01T21:49:14,310   Found link https://files.pythonhosted.org/packages/08/e6/24efd5e5fb01a411a389c5c870310ee0e751e19b1f753228ec40eeeb84e3/apples-1.2.3.tar.gz#sha256=22459c89f177f4ae49803d5d87ae219de503c3c7f9054b36027ddc0ae57243a8 (from https://pypi.org/simple/apples/), version: 1.2.3
2022-02-01T21:49:14,311   Found link https://files.pythonhosted.org/packages/8b/20/94d3ca2ae0368df0d1d0c864d1cf51250a7ddf7c1808c91dbfb87f677ba6/apples-1.2.4.tar.gz#sha256=4c199a183cb001a678a74312b2c4c193c42ec773c29cba2200e17c3ad97fe943 (from https://pypi.org/simple/apples/), version: 1.2.4
2022-02-01T21:49:14,312   Found link https://files.pythonhosted.org/packages/a9/fd/681f0174edefb362000f60988e31292ec502f73e3cb25c322d1c6d2fb9fc/apples-1.3.0.tar.gz#sha256=50909b4ddca5c9ee3e0c8b623bdbfa5a00f05969f5bcf65904cefb861fcb510d (from https://pypi.org/simple/apples/), version: 1.3.0
2022-02-01T21:49:14,313   Found link https://files.pythonhosted.org/packages/ca/06/8fb609001720a6af6f1467bfe9b93e422fd49c174aedf947f15fd8ed10bc/apples-2.0.0.tar.gz#sha256=87de7488aaf7705b599dbefb1712a26efc2a48616bf97fcadcf383065a722c2b (from https://pypi.org/simple/apples/), version: 2.0.0
2022-02-01T21:49:14,314   Found link https://files.pythonhosted.org/packages/32/65/fae772f0a15813698c50cee20bfadebda401aa05f8ab17150d4b89537efb/apples-2.0.1.tar.gz#sha256=e4e30ff684f47c5dc50ae5ee69ef8bb1a8bcf93643f719dbd198c7ddbea9d8df (from https://pypi.org/simple/apples/), version: 2.0.1
2022-02-01T21:49:14,315   Found link https://files.pythonhosted.org/packages/f1/be/71602abfbba6cd73baf152b703bbe8085b41291dcf4b8b5ac386cc51fafc/apples-2.0.2.tar.gz#sha256=68a54265cd5069f2940a736810b179a911c81bfcc1b844283de639a0e8f1d9f2 (from https://pypi.org/simple/apples/), version: 2.0.2
2022-02-01T21:49:14,316   Found link https://files.pythonhosted.org/packages/e8/30/1f880163b12a0887ea3a641e662b830c6889da60fafca54e7c0d8f3dbc41/apples-2.0.3.tar.gz#sha256=6ea8e1becdf55ec1c8a6f5655b1c32973d9c8759e1eaaff12a16c3eca1c3edbd (from https://pypi.org/simple/apples/), version: 2.0.3
2022-02-01T21:49:14,316   Found link https://files.pythonhosted.org/packages/11/aa/9a114032ccd2457d1031111160855525fe884d6c00a9126ee3c8bcff29dc/apples-2.0.4.tar.gz#sha256=dcca3f231d41f8892eab7db7064f9239e55190905412c2bf1877e9d5ae94b854 (from https://pypi.org/simple/apples/), version: 2.0.4
2022-02-01T21:49:14,317   Found link https://files.pythonhosted.org/packages/9b/34/8c91e8ab63b3a3a38fbdb91fcadcc1512bd74ad4b74782ceeba9e04043db/apples-2.0.5.tar.gz#sha256=6dc147168b6cec4d54798578fd5623a11a0544f785322526bfaa99db6b7b5fd2 (from https://pypi.org/simple/apples/), version: 2.0.5
2022-02-01T21:49:14,318   Found link https://files.pythonhosted.org/packages/3d/8f/20490ae36b289b403e65a2a09a5120fec47ad16ca46e24bbba40d4bfd51e/apples-2.0.6.tar.gz#sha256=9d16c4ad4e79eaf5637c09f2469ac17257c99936026257d5b055a731b4de99f1 (from https://pypi.org/simple/apples/), version: 2.0.6
2022-02-01T21:49:14,319   Found link https://files.pythonhosted.org/packages/af/04/84d2bededf2716c45dde0d970790756519ec752fa6815cbd3e789b68937c/apples-2.0.7.tar.gz#sha256=fd66eb83fc852d2140589937323ee67f29e0a9c40357832d89472e02fce73869 (from https://pypi.org/simple/apples/), version: 2.0.7
2022-02-01T21:49:14,319 Fetching project page and analyzing links: https://www.piwheels.org/simple/apples/
2022-02-01T21:49:14,320 Getting page https://www.piwheels.org/simple/apples/
2022-02-01T21:49:14,323 Found index url https://www.piwheels.org/simple
2022-02-01T21:49:14,567   Skipping link: No binaries permitted for apples: https://www.piwheels.org/simple/apples/apples-1.2.1-py3-none-any.whl#sha256=3ec173a65f1e154ae81ff51306b5d21db0c13f3425912a6113194da42594ca89 (from https://www.piwheels.org/simple/apples/)
2022-02-01T21:49:14,568   Skipping link: No binaries permitted for apples: https://www.piwheels.org/simple/apples/apples-1.2.3-py3-none-any.whl#sha256=a9406e2787166fec2af2169b9c27696ee541c18c3af3f8d78c14d2364aef868f (from https://www.piwheels.org/simple/apples/)
2022-02-01T21:49:14,569   Skipping link: No binaries permitted for apples: https://www.piwheels.org/simple/apples/apples-1.2.4-py3-none-any.whl#sha256=6d0558f368fbff39d49738c7cfa8377a03f678d7509d40ddf974c756ad578095 (from https://www.piwheels.org/simple/apples/)
2022-02-01T21:49:14,569   Skipping link: No binaries permitted for apples: https://www.piwheels.org/simple/apples/apples-1.3.0-py3-none-any.whl#sha256=e0245b39d476fbab49f7f9c24e6253b810cef706cb46571de113d1b52579ae46 (from https://www.piwheels.org/simple/apples/)
2022-02-01T21:49:14,570   Skipping link: No binaries permitted for apples: https://www.piwheels.org/simple/apples/apples-2.0.0-py3-none-any.whl#sha256=36ed7d6802e7c3b46a33b3e4c54324ffcb8e8d659556dcf6261ecd0208f4f2f5 (from https://www.piwheels.org/simple/apples/)
2022-02-01T21:49:14,571   Skipping link: No binaries permitted for apples: https://www.piwheels.org/simple/apples/apples-2.0.1-py3-none-any.whl#sha256=fee4f72b4099ede7c621605a227fae27775f03d2a9654b17e6e6cb5bc971069e (from https://www.piwheels.org/simple/apples/)
2022-02-01T21:49:14,571   Skipping link: No binaries permitted for apples: https://www.piwheels.org/simple/apples/apples-2.0.2-py3-none-any.whl#sha256=7b2a3b37bf6ba42ec3506ba65bbbf1961ea2a2540100d9bfed4f901a6edd1cf7 (from https://www.piwheels.org/simple/apples/)
2022-02-01T21:49:14,572   Skipping link: No binaries permitted for apples: https://www.piwheels.org/simple/apples/apples-2.0.3-py3-none-any.whl#sha256=2aeff899d560c7f18a24ace0d942ec9c60903a681a67aed3f5e775d47d929e7a (from https://www.piwheels.org/simple/apples/)
2022-02-01T21:49:14,573   Skipping link: No binaries permitted for apples: https://www.piwheels.org/simple/apples/apples-2.0.4-py3-none-any.whl#sha256=cb14fc20a431720fbec493e2bd452ec93e0bde1d91d57d6381e0d3d76a01158b (from https://www.piwheels.org/simple/apples/)
2022-02-01T21:49:14,573   Skipping link: No binaries permitted for apples: https://www.piwheels.org/simple/apples/apples-2.0.5-py3-none-any.whl#sha256=fccf11e1d16b02860894ff2cffa4f4676554902fdc6851ee2f224bf9724c4fcf (from https://www.piwheels.org/simple/apples/)
2022-02-01T21:49:14,574   Skipping link: No binaries permitted for apples: https://www.piwheels.org/simple/apples/apples-2.0.6-py3-none-any.whl#sha256=9b0ff2720a08ba2a2a479e89a91aa52540d4f913d75d12e12c3772aaca54c8df (from https://www.piwheels.org/simple/apples/)
2022-02-01T21:49:14,608 Given no hashes to check 1 links for project 'apples': discarding no candidates
2022-02-01T21:49:14,639 Collecting apples==2.0.7
2022-02-01T21:49:14,643   Created temporary directory: /tmp/pip-unpack-j0nj0ryk
2022-02-01T21:49:14,878   Downloading apples-2.0.7.tar.gz (758 kB)
2022-02-01T21:49:15,511   Added apples==2.0.7 from https://files.pythonhosted.org/packages/af/04/84d2bededf2716c45dde0d970790756519ec752fa6815cbd3e789b68937c/apples-2.0.7.tar.gz#sha256=fd66eb83fc852d2140589937323ee67f29e0a9c40357832d89472e02fce73869 to build tracker '/tmp/pip-req-tracker-rrgqmj_n'
2022-02-01T21:49:15,514     Running setup.py (path:/tmp/pip-wheel-f2jwzvwh/apples_53cfa66b118f4321a91eb1c38857e52d/setup.py) egg_info for package apples
2022-02-01T21:49:15,516     Created temporary directory: /tmp/pip-pip-egg-info-4189zdmn
2022-02-01T21:49:15,518     Running command python setup.py egg_info
2022-02-01T21:49:17,711     running egg_info
2022-02-01T21:49:17,717     creating /tmp/pip-pip-egg-info-4189zdmn/apples.egg-info
2022-02-01T21:49:17,719     writing /tmp/pip-pip-egg-info-4189zdmn/apples.egg-info/PKG-INFO
2022-02-01T21:49:17,725     writing requirements to /tmp/pip-pip-egg-info-4189zdmn/apples.egg-info/requires.txt
2022-02-01T21:49:17,729     writing dependency_links to /tmp/pip-pip-egg-info-4189zdmn/apples.egg-info/dependency_links.txt
2022-02-01T21:49:17,731     writing top-level names to /tmp/pip-pip-egg-info-4189zdmn/apples.egg-info/top_level.txt
2022-02-01T21:49:17,735     writing manifest file '/tmp/pip-pip-egg-info-4189zdmn/apples.egg-info/SOURCES.txt'
2022-02-01T21:49:18,110     reading manifest file '/tmp/pip-pip-egg-info-4189zdmn/apples.egg-info/SOURCES.txt'
2022-02-01T21:49:18,114     reading manifest template 'MANIFEST.in'
2022-02-01T21:49:18,126     writing manifest file '/tmp/pip-pip-egg-info-4189zdmn/apples.egg-info/SOURCES.txt'
2022-02-01T21:49:18,259   Source in /tmp/pip-wheel-f2jwzvwh/apples_53cfa66b118f4321a91eb1c38857e52d has version 2.0.7, which satisfies requirement apples==2.0.7 from https://files.pythonhosted.org/packages/af/04/84d2bededf2716c45dde0d970790756519ec752fa6815cbd3e789b68937c/apples-2.0.7.tar.gz#sha256=fd66eb83fc852d2140589937323ee67f29e0a9c40357832d89472e02fce73869
2022-02-01T21:49:18,261   Removed apples==2.0.7 from https://files.pythonhosted.org/packages/af/04/84d2bededf2716c45dde0d970790756519ec752fa6815cbd3e789b68937c/apples-2.0.7.tar.gz#sha256=fd66eb83fc852d2140589937323ee67f29e0a9c40357832d89472e02fce73869 from build tracker '/tmp/pip-req-tracker-rrgqmj_n'
2022-02-01T21:49:18,269 Created temporary directory: /tmp/pip-unpack-htc9eg0c
2022-02-01T21:49:18,270 Building wheels for collected packages: apples
2022-02-01T21:49:18,279   Created temporary directory: /tmp/pip-wheel-ikvzytps
2022-02-01T21:49:18,280   Building wheel for apples (setup.py): started
2022-02-01T21:49:18,281   Destination directory: /tmp/pip-wheel-ikvzytps
2022-02-01T21:49:18,282   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-f2jwzvwh/apples_53cfa66b118f4321a91eb1c38857e52d/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-f2jwzvwh/apples_53cfa66b118f4321a91eb1c38857e52d/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ikvzytps
2022-02-01T21:49:20,492   running bdist_wheel
2022-02-01T21:49:20,507   running build
2022-02-01T21:49:20,508   running build_py
2022-02-01T21:49:20,848   creating build
2022-02-01T21:49:20,849   creating build/lib
2022-02-01T21:49:20,851   creating build/lib/apples
2022-02-01T21:49:20,854   copying apples/version.py -> build/lib/apples
2022-02-01T21:49:20,858   copying apples/reestimateBackbone.py -> build/lib/apples
2022-02-01T21:49:20,863   copying apples/FM.py -> build/lib/apples
2022-02-01T21:49:20,867   copying apples/OLS.py -> build/lib/apples
2022-02-01T21:49:20,872   copying apples/distance.py -> build/lib/apples
2022-02-01T21:49:20,878   copying apples/OptionsBasic.py -> build/lib/apples
2022-02-01T21:49:20,884   copying apples/PoolRepresentativeWorker.py -> build/lib/apples
2022-02-01T21:49:20,890   copying apples/util.py -> build/lib/apples
2022-02-01T21:49:20,896   copying apples/OptionsBuild.py -> build/lib/apples
2022-02-01T21:49:20,901   copying apples/Algorithm.py -> build/lib/apples
2022-02-01T21:49:20,906   copying apples/__init__.py -> build/lib/apples
2022-02-01T21:49:20,912   copying apples/jutil.py -> build/lib/apples
2022-02-01T21:49:20,917   copying apples/Reference.py -> build/lib/apples
2022-02-01T21:49:20,921   copying apples/BME.py -> build/lib/apples
2022-02-01T21:49:20,926   copying apples/prepareTree.py -> build/lib/apples
2022-02-01T21:49:20,930   copying apples/fasta2dic.py -> build/lib/apples
2022-02-01T21:49:20,935   copying apples/Subtree.py -> build/lib/apples
2022-02-01T21:49:20,941   copying apples/BE.py -> build/lib/apples
2022-02-01T21:49:20,947   copying apples/PoolQueryWorker.py -> build/lib/apples
2022-02-01T21:49:20,953   copying apples/PrioritySet.py -> build/lib/apples
2022-02-01T21:49:20,959   copying apples/OptionsRun.py -> build/lib/apples
2022-02-01T21:49:20,966   creating build/lib/apples/tools
2022-02-01T21:49:20,969   copying apples/tools/__init__.py -> build/lib/apples/tools
2022-02-01T21:49:20,972   running egg_info
2022-02-01T21:49:21,002   writing dependency_links to apples.egg-info/dependency_links.txt
2022-02-01T21:49:21,005   writing requirements to apples.egg-info/requires.txt
2022-02-01T21:49:21,009   writing apples.egg-info/PKG-INFO
2022-02-01T21:49:21,013   writing top-level names to apples.egg-info/top_level.txt
2022-02-01T21:49:21,026   reading manifest file 'apples.egg-info/SOURCES.txt'
2022-02-01T21:49:21,031   reading manifest template 'MANIFEST.in'
2022-02-01T21:49:21,045   writing manifest file 'apples.egg-info/SOURCES.txt'
2022-02-01T21:49:21,050   copying apples/tools/FastTree-darwin -> build/lib/apples/tools
2022-02-01T21:49:21,139   copying apples/tools/FastTree-linux -> build/lib/apples/tools
2022-02-01T21:49:21,181   copying apples/tools/FastTree.exe -> build/lib/apples/tools
2022-02-01T21:49:21,220   running build_scripts
2022-02-01T21:49:21,221   creating build/scripts-3.5
2022-02-01T21:49:21,225   copying and adjusting run_apples.py -> build/scripts-3.5
2022-02-01T21:49:21,231   copying and adjusting build_applesdtb.py -> build/scripts-3.5
2022-02-01T21:49:21,233   changing mode of build/scripts-3.5/run_apples.py from 644 to 755
2022-02-01T21:49:21,235   changing mode of build/scripts-3.5/build_applesdtb.py from 644 to 755
2022-02-01T21:49:21,246   installing to build/bdist.linux-armv7l/wheel
2022-02-01T21:49:21,247   running install
2022-02-01T21:49:21,248   running install_lib
2022-02-01T21:49:21,257   creating build/bdist.linux-armv7l
2022-02-01T21:49:21,257   creating build/bdist.linux-armv7l/wheel
2022-02-01T21:49:21,261   creating build/bdist.linux-armv7l/wheel/apples
2022-02-01T21:49:21,263   copying build/lib/apples/version.py -> build/bdist.linux-armv7l/wheel/apples
2022-02-01T21:49:21,267   copying build/lib/apples/reestimateBackbone.py -> build/bdist.linux-armv7l/wheel/apples
2022-02-01T21:49:21,272   copying build/lib/apples/FM.py -> build/bdist.linux-armv7l/wheel/apples
2022-02-01T21:49:21,276   copying build/lib/apples/OLS.py -> build/bdist.linux-armv7l/wheel/apples
2022-02-01T21:49:21,280   copying build/lib/apples/distance.py -> build/bdist.linux-armv7l/wheel/apples
2022-02-01T21:49:21,286   copying build/lib/apples/OptionsBasic.py -> build/bdist.linux-armv7l/wheel/apples
2022-02-01T21:49:21,292   copying build/lib/apples/PoolRepresentativeWorker.py -> build/bdist.linux-armv7l/wheel/apples
2022-02-01T21:49:21,297   copying build/lib/apples/util.py -> build/bdist.linux-armv7l/wheel/apples
2022-02-01T21:49:21,303   copying build/lib/apples/OptionsBuild.py -> build/bdist.linux-armv7l/wheel/apples
2022-02-01T21:49:21,306   copying build/lib/apples/Algorithm.py -> build/bdist.linux-armv7l/wheel/apples
2022-02-01T21:49:21,310   copying build/lib/apples/__init__.py -> build/bdist.linux-armv7l/wheel/apples
2022-02-01T21:49:21,315   creating build/bdist.linux-armv7l/wheel/apples/tools
2022-02-01T21:49:21,317   copying build/lib/apples/tools/FastTree-darwin -> build/bdist.linux-armv7l/wheel/apples/tools
2022-02-01T21:49:21,405   copying build/lib/apples/tools/__init__.py -> build/bdist.linux-armv7l/wheel/apples/tools
2022-02-01T21:49:21,410   copying build/lib/apples/tools/FastTree.exe -> build/bdist.linux-armv7l/wheel/apples/tools
2022-02-01T21:49:21,444   copying build/lib/apples/tools/FastTree-linux -> build/bdist.linux-armv7l/wheel/apples/tools
2022-02-01T21:49:21,485   copying build/lib/apples/jutil.py -> build/bdist.linux-armv7l/wheel/apples
2022-02-01T21:49:21,490   copying build/lib/apples/Reference.py -> build/bdist.linux-armv7l/wheel/apples
2022-02-01T21:49:21,496   copying build/lib/apples/BME.py -> build/bdist.linux-armv7l/wheel/apples
2022-02-01T21:49:21,502   copying build/lib/apples/prepareTree.py -> build/bdist.linux-armv7l/wheel/apples
2022-02-01T21:49:21,507   copying build/lib/apples/fasta2dic.py -> build/bdist.linux-armv7l/wheel/apples
2022-02-01T21:49:21,513   copying build/lib/apples/Subtree.py -> build/bdist.linux-armv7l/wheel/apples
2022-02-01T21:49:21,518   copying build/lib/apples/BE.py -> build/bdist.linux-armv7l/wheel/apples
2022-02-01T21:49:21,524   copying build/lib/apples/PoolQueryWorker.py -> build/bdist.linux-armv7l/wheel/apples
2022-02-01T21:49:21,530   copying build/lib/apples/PrioritySet.py -> build/bdist.linux-armv7l/wheel/apples
2022-02-01T21:49:21,535   copying build/lib/apples/OptionsRun.py -> build/bdist.linux-armv7l/wheel/apples
2022-02-01T21:49:21,540   running install_egg_info
2022-02-01T21:49:21,560   Copying apples.egg-info to build/bdist.linux-armv7l/wheel/apples-2.0.7-py3.5.egg-info
2022-02-01T21:49:21,587   running install_scripts
2022-02-01T21:49:21,732   creating build/bdist.linux-armv7l/wheel/apples-2.0.7.data
2022-02-01T21:49:21,733   creating build/bdist.linux-armv7l/wheel/apples-2.0.7.data/scripts
2022-02-01T21:49:21,736   copying build/scripts-3.5/run_apples.py -> build/bdist.linux-armv7l/wheel/apples-2.0.7.data/scripts
2022-02-01T21:49:21,742   copying build/scripts-3.5/build_applesdtb.py -> build/bdist.linux-armv7l/wheel/apples-2.0.7.data/scripts
2022-02-01T21:49:21,746   changing mode of build/bdist.linux-armv7l/wheel/apples-2.0.7.data/scripts/run_apples.py to 755
2022-02-01T21:49:21,746   changing mode of build/bdist.linux-armv7l/wheel/apples-2.0.7.data/scripts/build_applesdtb.py to 755
2022-02-01T21:49:21,792   creating build/bdist.linux-armv7l/wheel/apples-2.0.7.dist-info/WHEEL
2022-02-01T21:49:22,655   Building wheel for apples (setup.py): finished with status 'done'
2022-02-01T21:49:22,672   Created wheel for apples: filename=apples-2.0.7-py3-none-any.whl size=765948 sha256=8051c00de7b87b888dfcb29cc88a31b4952322fa12e9720f5357190970d67330
2022-02-01T21:49:22,673   Stored in directory: /tmp/pip-ephem-wheel-cache-h6tg5fxj/wheels/55/ab/d3/7b0a9653d149e3a0822cc27574c02262e485d6fa58ac33e2ab
2022-02-01T21:49:22,692 Successfully built apples
2022-02-01T21:49:22,829 Removed build tracker: '/tmp/pip-req-tracker-rrgqmj_n'