2022-02-03T06:05:34,261 Created temporary directory: /tmp/pip-ephem-wheel-cache-fhofb8bi 2022-02-03T06:05:34,266 Created temporary directory: /tmp/pip-req-tracker-u8yg_6pz 2022-02-03T06:05:34,267 Initialized build tracking at /tmp/pip-req-tracker-u8yg_6pz 2022-02-03T06:05:34,267 Created build tracker: /tmp/pip-req-tracker-u8yg_6pz 2022-02-03T06:05:34,268 Entered build tracker: /tmp/pip-req-tracker-u8yg_6pz 2022-02-03T06:05:34,269 Created temporary directory: /tmp/pip-wheel-8jaqlpl4 2022-02-03T06:05:34,328 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-02-03T06:05:34,334 2 location(s) to search for versions of cdot: 2022-02-03T06:05:34,334 * https://pypi.org/simple/cdot/ 2022-02-03T06:05:34,334 * https://www.piwheels.org/simple/cdot/ 2022-02-03T06:05:34,335 Fetching project page and analyzing links: https://pypi.org/simple/cdot/ 2022-02-03T06:05:34,336 Getting page https://pypi.org/simple/cdot/ 2022-02-03T06:05:34,339 Found index url https://pypi.org/simple 2022-02-03T06:05:34,545 Skipping link: No binaries permitted for cdot: https://files.pythonhosted.org/packages/3d/22/214ad62937068f36bf8cafa3bba79d1c7eb161a3dcc7580e4338b63fc544/cdot-0.1.1-py3-none-any.whl#sha256=42432acf179300c78b9e959ce4dc222656e09b73efe41559903774061352c786 (from https://pypi.org/simple/cdot/) (requires-python:>=3.8) 2022-02-03T06:05:34,546 Found link https://files.pythonhosted.org/packages/13/d4/dc0da1d4851fc43dedc758568a35a82e1ce4965786b5037939d62a4ef1de/cdot-0.1.1.tar.gz#sha256=84f858c4c95d7dc979df810e75ed8c794be418fb5fddbac937dc0cc2cfa0d5eb (from https://pypi.org/simple/cdot/) (requires-python:>=3.8), version: 0.1.1 2022-02-03T06:05:34,547 Skipping link: No binaries permitted for cdot: https://files.pythonhosted.org/packages/d6/cb/4a25bf6c788c392e69f7a0b8ebfb5740f520ea8cf1f5af9e0d9e26d12385/cdot-0.2.1-py3-none-any.whl#sha256=d2aab58418a194f2be5bceeafa9ac262bd38fd103e4716ad9987cad2f2fca63f (from https://pypi.org/simple/cdot/) (requires-python:>=3.8) 2022-02-03T06:05:34,548 Found link https://files.pythonhosted.org/packages/ef/80/850c81ff00fe8a3235d3a37de20af192ba871998392cdb3ce64d96abcad5/cdot-0.2.1.tar.gz#sha256=5b0b5f642923c5e54fe7fe59b7d5f78dfd538bc4e0a07fc67df9ef0b06b88b53 (from https://pypi.org/simple/cdot/) (requires-python:>=3.8), version: 0.2.1 2022-02-03T06:05:34,549 Skipping link: No binaries permitted for cdot: https://files.pythonhosted.org/packages/6e/34/de1475aad1654bc2d9f96ef673784966ae8e6520839e43d917f3bb3a43e1/cdot-0.2.2-py3-none-any.whl#sha256=5aab43860903c145edf79d5ae101add32f1747d19bb5757c93bb593b4f0ce487 (from https://pypi.org/simple/cdot/) (requires-python:>=3.8) 2022-02-03T06:05:34,550 Found link https://files.pythonhosted.org/packages/0a/4a/c7e2522e7ae27004f112a22a0899b12f400ea4fbdfecbbe05fe3e85d0d7b/cdot-0.2.2.tar.gz#sha256=25a389385d180928e2bd08dea78ed888a3223a9c20924af37af6a9443db1cb7e (from https://pypi.org/simple/cdot/) (requires-python:>=3.8), version: 0.2.2 2022-02-03T06:05:34,551 Fetching project page and analyzing links: https://www.piwheels.org/simple/cdot/ 2022-02-03T06:05:34,552 Getting page https://www.piwheels.org/simple/cdot/ 2022-02-03T06:05:34,560 Found index url https://www.piwheels.org/simple 2022-02-03T06:05:34,771 Skipping link: No binaries permitted for cdot: https://www.piwheels.org/simple/cdot/cdot-0.1.1-py3-none-any.whl#sha256=5d90d2b2abd202ce3a63e85c9dd7bb20658f273945be1c0af354e50a1971dc17 (from https://www.piwheels.org/simple/cdot/) (requires-python:>=3.8) 2022-02-03T06:05:34,772 Skipping link: No binaries permitted for cdot: https://www.piwheels.org/simple/cdot/cdot-0.2.1-py3-none-any.whl#sha256=59571b8928689dc694a90ccd4d44d827dfe00eb09010328766cac3986f55b315 (from https://www.piwheels.org/simple/cdot/) (requires-python:>=3.8) 2022-02-03T06:05:34,772 Skipping link: not a file: https://www.piwheels.org/simple/cdot/ 2022-02-03T06:05:34,773 Skipping link: not a file: https://pypi.org/simple/cdot/ 2022-02-03T06:05:34,818 Given no hashes to check 1 links for project 'cdot': discarding no candidates 2022-02-03T06:05:34,860 Collecting cdot==0.2.2 2022-02-03T06:05:34,863 Created temporary directory: /tmp/pip-unpack-beeflev0 2022-02-03T06:05:35,085 Downloading cdot-0.2.2.tar.gz (16 kB) 2022-02-03T06:05:35,203 Added cdot==0.2.2 from https://files.pythonhosted.org/packages/0a/4a/c7e2522e7ae27004f112a22a0899b12f400ea4fbdfecbbe05fe3e85d0d7b/cdot-0.2.2.tar.gz#sha256=25a389385d180928e2bd08dea78ed888a3223a9c20924af37af6a9443db1cb7e to build tracker '/tmp/pip-req-tracker-u8yg_6pz' 2022-02-03T06:05:35,211 Created temporary directory: /tmp/pip-build-env-mkhgb7li 2022-02-03T06:05:35,233 Created temporary directory: /tmp/pip-standalone-pip-naskh3nz 2022-02-03T06:05:37,034 Installing build dependencies: started 2022-02-03T06:05:37,035 Running command /usr/bin/python3 /tmp/pip-standalone-pip-naskh3nz/__env_pip__.zip/pip install --ignore-installed --no-user --prefix /tmp/pip-build-env-mkhgb7li/overlay --no-warn-script-location -v --no-binary cdot --only-binary :none: -i https://pypi.org/simple --extra-index-url https://www.piwheels.org/simple --prefer-binary -- 'setuptools>=42' wheel 2022-02-03T06:05:46,425 Using pip 21.3.1 from /tmp/pip-standalone-pip-naskh3nz/__env_pip__.zip/pip (python 3.9) 2022-02-03T06:05:47,287 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-02-03T06:05:52,362 Collecting setuptools>=42 2022-02-03T06:05:52,401 Downloading https://www.piwheels.org/simple/setuptools/setuptools-60.7.1-py3-none-any.whl (1.0 MB) 2022-02-03T06:05:53,415 Collecting wheel 2022-02-03T06:05:53,493 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-02-03T06:05:56,935 Installing collected packages: wheel, setuptools 2022-02-03T06:05:57,217 Creating /tmp/pip-build-env-mkhgb7li/overlay/bin 2022-02-03T06:05:57,220 changing mode of /tmp/pip-build-env-mkhgb7li/overlay/bin/wheel to 755 2022-02-03T06:06:00,997 Successfully installed setuptools-60.7.1 wheel-0.37.1 2022-02-03T06:06:01,177 WARNING: You are using pip version 21.3.1; however, version 22.0.2 is available. 2022-02-03T06:06:01,177 You should consider upgrading via the '/usr/bin/python3 -m pip install --upgrade pip' command. 2022-02-03T06:06:01,583 Installing build dependencies: finished with status 'done' 2022-02-03T06:06:01,604 Getting requirements to build wheel: started 2022-02-03T06:06:01,605 Running command /usr/bin/python3 /usr/local/lib/python3.9/dist-packages/pip/_vendor/pep517/in_process/_in_process.py get_requires_for_build_wheel /tmp/tmpmefutoj9 2022-02-03T06:06:03,339 running egg_info 2022-02-03T06:06:03,387 writing manifest file 'cdot.egg-info/SOURCES.txt' 2022-02-03T06:06:03,506 Getting requirements to build wheel: finished with status 'done' 2022-02-03T06:06:03,524 Created temporary directory: /tmp/pip-modern-metadata-z6l9izbf 2022-02-03T06:06:03,529 Preparing metadata (pyproject.toml): started 2022-02-03T06:06:03,530 Running command /usr/bin/python3 /usr/local/lib/python3.9/dist-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /tmp/tmp_qwpnaj7 2022-02-03T06:06:05,404 running dist_info 2022-02-03T06:06:05,432 creating /tmp/pip-modern-metadata-z6l9izbf/cdot.egg-info 2022-02-03T06:06:05,446 writing manifest file '/tmp/pip-modern-metadata-z6l9izbf/cdot.egg-info/SOURCES.txt' 2022-02-03T06:06:05,473 writing manifest file '/tmp/pip-modern-metadata-z6l9izbf/cdot.egg-info/SOURCES.txt' 2022-02-03T06:06:05,726 Preparing metadata (pyproject.toml): finished with status 'done' 2022-02-03T06:06:05,738 Source in /tmp/pip-wheel-8jaqlpl4/cdot_40cc3202b6394ecea9969e8b02e49fa6 has version 0.2.2, which satisfies requirement cdot==0.2.2 from https://files.pythonhosted.org/packages/0a/4a/c7e2522e7ae27004f112a22a0899b12f400ea4fbdfecbbe05fe3e85d0d7b/cdot-0.2.2.tar.gz#sha256=25a389385d180928e2bd08dea78ed888a3223a9c20924af37af6a9443db1cb7e 2022-02-03T06:06:05,740 Removed cdot==0.2.2 from https://files.pythonhosted.org/packages/0a/4a/c7e2522e7ae27004f112a22a0899b12f400ea4fbdfecbbe05fe3e85d0d7b/cdot-0.2.2.tar.gz#sha256=25a389385d180928e2bd08dea78ed888a3223a9c20924af37af6a9443db1cb7e from build tracker '/tmp/pip-req-tracker-u8yg_6pz' 2022-02-03T06:06:05,753 Created temporary directory: /tmp/pip-unpack-wwj_yba2 2022-02-03T06:06:05,754 Building wheels for collected packages: cdot 2022-02-03T06:06:05,762 Created temporary directory: /tmp/pip-wheel-jmtisywa 2022-02-03T06:06:05,762 Destination directory: /tmp/pip-wheel-jmtisywa 2022-02-03T06:06:05,767 Building wheel for cdot (pyproject.toml): started 2022-02-03T06:06:05,768 Running command /usr/bin/python3 /usr/local/lib/python3.9/dist-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmp47h3ulhg 2022-02-03T06:06:07,492 running bdist_wheel 2022-02-03T06:06:07,951 running build 2022-02-03T06:06:07,952 running build_py 2022-02-03T06:06:07,959 creating build 2022-02-03T06:06:07,959 creating build/lib 2022-02-03T06:06:07,960 creating build/lib/cdot 2022-02-03T06:06:07,962 copying cdot/__init__.py -> build/lib/cdot 2022-02-03T06:06:07,967 creating build/lib/tests 2022-02-03T06:06:07,968 copying tests/test_pyhgvs.py -> build/lib/tests 2022-02-03T06:06:07,971 copying tests/benchmark_hgvs.py -> build/lib/tests 2022-02-03T06:06:07,975 copying tests/__init__.py -> build/lib/tests 2022-02-03T06:06:07,977 copying tests/test_json_data_provider.py -> build/lib/tests 2022-02-03T06:06:07,980 copying tests/genome.py -> build/lib/tests 2022-02-03T06:06:07,985 creating build/lib/cdot/hgvs 2022-02-03T06:06:07,986 copying cdot/hgvs/__init__.py -> build/lib/cdot/hgvs 2022-02-03T06:06:07,990 creating build/lib/cdot/gff 2022-02-03T06:06:07,991 copying cdot/gff/gff_parser.py -> build/lib/cdot/gff 2022-02-03T06:06:07,996 copying cdot/gff/__init__.py -> build/lib/cdot/gff 2022-02-03T06:06:07,999 creating build/lib/cdot/pyhgvs 2022-02-03T06:06:08,001 copying cdot/pyhgvs/pyhgvs_transcript.py -> build/lib/cdot/pyhgvs 2022-02-03T06:06:08,004 copying cdot/pyhgvs/__init__.py -> build/lib/cdot/pyhgvs 2022-02-03T06:06:08,008 creating build/lib/cdot/hgvs/dataproviders 2022-02-03T06:06:08,009 copying cdot/hgvs/dataproviders/json_data_provider.py -> build/lib/cdot/hgvs/dataproviders 2022-02-03T06:06:08,013 copying cdot/hgvs/dataproviders/__init__.py -> build/lib/cdot/hgvs/dataproviders 2022-02-03T06:06:08,038 running install 2022-02-03T06:06:08,098 running install_lib 2022-02-03T06:06:08,105 creating build/bdist.linux-armv7l 2022-02-03T06:06:08,106 creating build/bdist.linux-armv7l/wheel 2022-02-03T06:06:08,109 creating build/bdist.linux-armv7l/wheel/cdot 2022-02-03T06:06:08,112 creating build/bdist.linux-armv7l/wheel/cdot/hgvs 2022-02-03T06:06:08,114 creating build/bdist.linux-armv7l/wheel/cdot/hgvs/dataproviders 2022-02-03T06:06:08,127 creating build/bdist.linux-armv7l/wheel/cdot/gff 2022-02-03T06:06:08,136 creating build/bdist.linux-armv7l/wheel/cdot/pyhgvs 2022-02-03T06:06:08,148 creating build/bdist.linux-armv7l/wheel/tests 2022-02-03T06:06:08,164 running install_egg_info 2022-02-03T06:06:08,201 running egg_info 2022-02-03T06:06:08,230 writing manifest file 'cdot.egg-info/SOURCES.txt' 2022-02-03T06:06:08,233 Copying cdot.egg-info to build/bdist.linux-armv7l/wheel/cdot-0.2.2-py3.9.egg-info 2022-02-03T06:06:08,251 running install_scripts 2022-02-03T06:06:08,659 Building wheel for cdot (pyproject.toml): finished with status 'done' 2022-02-03T06:06:08,669 Created wheel for cdot: filename=cdot-0.2.2-py3-none-any.whl size=18484 sha256=4f5f50ad4c6f9319a98026732ded7e99b336a4c1da5a7e70684f10cc852ef036 2022-02-03T06:06:08,670 Stored in directory: /tmp/pip-ephem-wheel-cache-fhofb8bi/wheels/d5/66/40/03bcd47477f011af9ada2804f40ad7f6e148b9add431351b22 2022-02-03T06:06:08,691 Successfully built cdot 2022-02-03T06:06:08,697 Removed build tracker: '/tmp/pip-req-tracker-u8yg_6pz'