2022-02-04T13:19:11,579 Created temporary directory: /tmp/pip-ephem-wheel-cache-pznxdhcp 2022-02-04T13:19:11,586 Created temporary directory: /tmp/pip-req-tracker-89r5g_3o 2022-02-04T13:19:11,586 Initialized build tracking at /tmp/pip-req-tracker-89r5g_3o 2022-02-04T13:19:11,587 Created build tracker: /tmp/pip-req-tracker-89r5g_3o 2022-02-04T13:19:11,587 Entered build tracker: /tmp/pip-req-tracker-89r5g_3o 2022-02-04T13:19:11,588 Created temporary directory: /tmp/pip-wheel-6rfe44xz 2022-02-04T13:19:11,662 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-02-04T13:19:11,668 2 location(s) to search for versions of ngpiris: 2022-02-04T13:19:11,668 * https://pypi.org/simple/ngpiris/ 2022-02-04T13:19:11,668 * https://www.piwheels.org/simple/ngpiris/ 2022-02-04T13:19:11,669 Fetching project page and analyzing links: https://pypi.org/simple/ngpiris/ 2022-02-04T13:19:11,670 Getting page https://pypi.org/simple/ngpiris/ 2022-02-04T13:19:11,673 Found index url https://pypi.org/simple 2022-02-04T13:19:12,102 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/4d/6e/f08727e739b7a54f7449ab02313eb50cabb2a795c92f253cf17f18c75617/NGPIris-3.0.0-py3-none-any.whl#sha256=dac24eee3dc89e5cc5d06a624ac05abbabf16839c3f24c0374e5d6c9793ba3a4 (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-02-04T13:19:12,104 Found link https://files.pythonhosted.org/packages/78/19/bf5cc9159ce9a268be187a5bddf2544732e150c403caaba9bb72031a6d38/NGPIris-3.0.0.tar.gz#sha256=140df6939be0bca354f461918e6bfe347a4a1073716d8bd8d1f7978d5efff6f6 (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.0.0 2022-02-04T13:19:12,105 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/a1/28/41151a5e1b5f39a800959d061e7f95eaa000ec0f590194b904e8174d850b/NGPIris-3.0.1-py3-none-any.whl#sha256=5a2d3510ce2f59c890e5eb889a75e7b1afce9064842c51f06fe2d1fe93447f46 (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-02-04T13:19:12,106 Found link https://files.pythonhosted.org/packages/6f/3e/43198b86cf36f8cb67292f40fde6f413df7b7a3712292985f0c9825e685b/NGPIris-3.0.1.tar.gz#sha256=428af44339cf6ed208977aaff1d4d698cf392169d2fd80bd903ea0834e501b25 (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.0.1 2022-02-04T13:19:12,107 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/19/f3/6b1617929c5001e2cff89989a25184e8027a613f0999f263c987a07ca753/NGPIris-3.0.2-py3-none-any.whl#sha256=9f259ff472419e54ea419f208efb7948dd47d837d282fbdfea8675a46087b6e8 (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-02-04T13:19:12,108 Found link https://files.pythonhosted.org/packages/bb/d2/aad6af2472bf44ece65bf403e0a7c9b40f7e899967e196fd53f26825b4b8/NGPIris-3.0.2.tar.gz#sha256=19d9ba766e5622080d85159670af8edf50fa9c98480a1083b13ec9add8deb740 (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.0.2 2022-02-04T13:19:12,109 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/ae/54/d7573467205bc7e14294a954def7f8c2194be848c6324ddfc1698b34017b/NGPIris-3.0.3-py3-none-any.whl#sha256=7a6b8e198690eb0aadbda66bc2525d8fc32017c724c4754305d4ab2ce531bac1 (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-02-04T13:19:12,110 Found link https://files.pythonhosted.org/packages/b3/61/71f9236acb7b62ce74a0bb298ebdf34cf03792730a70f1aef8522ad9b6b4/NGPIris-3.0.3.tar.gz#sha256=95a583d1d92e76113b7b363cdbd33ae038fd96d1186c3b3a188772d998301be5 (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.0.3 2022-02-04T13:19:12,111 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/a5/9a/addadfcc2e15874ed368c96636b0364efb4c66d03325cdf759e846bf7535/NGPIris-3.2.0-py3-none-any.whl#sha256=ad8ef1583c72ab8cf20a72b44f43af8ab2ab31ae4a52d317126e15492c88ac64 (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-02-04T13:19:12,112 Found link https://files.pythonhosted.org/packages/54/e0/4c980696e9d9ba08080acdb2fd9c10c5e2f91a9e9c637c05d16445d3885d/NGPIris-3.2.0.tar.gz#sha256=bd4a73a942b009fc3fd37f471abaff58a0a6eaab4ccfcfba5bff924e3ba1f8e6 (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.2.0 2022-02-04T13:19:12,113 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/e3/7c/f979667a67fcb64cc5f95350857bd8e23f41737c5258bd7adda601a6bcfd/NGPIris-3.4.0-py3-none-any.whl#sha256=9109bf8eb9c367c595c602cc21f21f6619232f6addc60c1053560228251de2e2 (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-02-04T13:19:12,114 Found link https://files.pythonhosted.org/packages/76/a0/0588bac324aa12b00f07b6f9908d0bbfa93ec2961cfaf43a25d2b03f417a/NGPIris-3.4.0.tar.gz#sha256=1144c7c875fb84dc1848d858c59e3d744ea0354596353cd292cb5d464e33af9c (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.4.0 2022-02-04T13:19:12,115 Fetching project page and analyzing links: https://www.piwheels.org/simple/ngpiris/ 2022-02-04T13:19:12,115 Getting page https://www.piwheels.org/simple/ngpiris/ 2022-02-04T13:19:12,118 Found index url https://www.piwheels.org/simple 2022-02-04T13:19:12,366 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.0.0-py3-none-any.whl#sha256=c1e03dfb87bc818cd85e79c209f4472232fd2ebfff1ba7dc03bae3cdaf9bd233 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-02-04T13:19:12,367 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.0.1-py3-none-any.whl#sha256=0e81c3cfead2a48f830959ae216820ff0fbca5855dbcf688bd2f48315be72860 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-02-04T13:19:12,367 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.0.2-py3-none-any.whl#sha256=c641248d1cd745848e1e17172315e26d9a5b1f285d82e00a13c828d2df52a42b (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-02-04T13:19:12,367 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.0.3-py3-none-any.whl#sha256=7f5bdd637e2f76d2556e053a6419f22bcf55f1c701f85a25f2d6d2242316d5d1 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-02-04T13:19:12,368 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.2.0-py3-none-any.whl#sha256=570205a5723cadf5283b876e9660252c2f2aeee83a926924290b1b405b5063b2 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-02-04T13:19:12,369 Skipping link: not a file: https://www.piwheels.org/simple/ngpiris/ 2022-02-04T13:19:12,369 Skipping link: not a file: https://pypi.org/simple/ngpiris/ 2022-02-04T13:19:12,404 Given no hashes to check 1 links for project 'ngpiris': discarding no candidates 2022-02-04T13:19:12,435 Collecting ngpiris==3.4.0 2022-02-04T13:19:12,438 Created temporary directory: /tmp/pip-unpack-6yqfzugp 2022-02-04T13:19:12,670 Downloading NGPIris-3.4.0.tar.gz (70 kB) 2022-02-04T13:19:12,875 Added ngpiris==3.4.0 from https://files.pythonhosted.org/packages/76/a0/0588bac324aa12b00f07b6f9908d0bbfa93ec2961cfaf43a25d2b03f417a/NGPIris-3.4.0.tar.gz#sha256=1144c7c875fb84dc1848d858c59e3d744ea0354596353cd292cb5d464e33af9c to build tracker '/tmp/pip-req-tracker-89r5g_3o' 2022-02-04T13:19:12,884 Created temporary directory: /tmp/pip-build-env-xnz0ufby 2022-02-04T13:19:12,898 Created temporary directory: /tmp/pip-standalone-pip-mm9kw551 2022-02-04T13:19:14,804 Installing build dependencies: started 2022-02-04T13:19:14,805 Running command /usr/bin/python3 /tmp/pip-standalone-pip-mm9kw551/__env_pip__.zip/pip install --ignore-installed --no-user --prefix /tmp/pip-build-env-xnz0ufby/overlay --no-warn-script-location -v --no-binary ngpiris --only-binary :none: -i https://pypi.org/simple --extra-index-url https://www.piwheels.org/simple --prefer-binary -- 'setuptools>=42' wheel 2022-02-04T13:19:23,267 Using pip 21.3.1 from /tmp/pip-standalone-pip-mm9kw551/__env_pip__.zip/pip (python 3.7) 2022-02-04T13:19:24,078 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-02-04T13:19:29,030 Collecting setuptools>=42 2022-02-04T13:19:29,231 Using cached https://www.piwheels.org/simple/setuptools/setuptools-60.7.1-py3-none-any.whl (1.0 MB) 2022-02-04T13:19:29,988 Collecting wheel 2022-02-04T13:19:30,023 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-02-04T13:19:33,776 Installing collected packages: wheel, setuptools 2022-02-04T13:19:34,040 Creating /tmp/pip-build-env-xnz0ufby/overlay/bin 2022-02-04T13:19:34,043 changing mode of /tmp/pip-build-env-xnz0ufby/overlay/bin/wheel to 755 2022-02-04T13:19:37,442 Successfully installed setuptools-60.7.1 wheel-0.37.1 2022-02-04T13:19:37,603 WARNING: You are using pip version 21.3.1; however, version 22.0.2 is available. 2022-02-04T13:19:37,604 You should consider upgrading via the '/usr/bin/python3 -m pip install --upgrade pip' command. 2022-02-04T13:19:38,000 Installing build dependencies: finished with status 'done' 2022-02-04T13:19:38,022 Getting requirements to build wheel: started 2022-02-04T13:19:38,022 Running command /usr/bin/python3 /usr/local/lib/python3.7/dist-packages/pip/_vendor/pep517/in_process/_in_process.py get_requires_for_build_wheel /tmp/tmpen_aborc 2022-02-04T13:19:39,864 running egg_info 2022-02-04T13:19:39,916 warning: no files found matching 'freeze.txt' 2022-02-04T13:19:39,917 warning: no files found matching 'profile.json' 2022-02-04T13:19:39,933 writing manifest file 'NGPIris.egg-info/SOURCES.txt' 2022-02-04T13:19:40,061 Getting requirements to build wheel: finished with status 'done' 2022-02-04T13:19:40,078 Created temporary directory: /tmp/pip-modern-metadata-vsu7vi30 2022-02-04T13:19:40,084 Preparing metadata (pyproject.toml): started 2022-02-04T13:19:40,085 Running command /usr/bin/python3 /usr/local/lib/python3.7/dist-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /tmp/tmp28ofystm 2022-02-04T13:19:41,829 running dist_info 2022-02-04T13:19:41,857 creating /tmp/pip-modern-metadata-vsu7vi30/NGPIris.egg-info 2022-02-04T13:19:41,874 writing manifest file '/tmp/pip-modern-metadata-vsu7vi30/NGPIris.egg-info/SOURCES.txt' 2022-02-04T13:19:41,901 warning: no files found matching 'freeze.txt' 2022-02-04T13:19:41,901 warning: no files found matching 'profile.json' 2022-02-04T13:19:41,916 writing manifest file '/tmp/pip-modern-metadata-vsu7vi30/NGPIris.egg-info/SOURCES.txt' 2022-02-04T13:19:42,182 Preparing metadata (pyproject.toml): finished with status 'done' 2022-02-04T13:19:42,194 Source in /tmp/pip-wheel-6rfe44xz/ngpiris_265ce5e5f70a48caa90ba0883ea78a82 has version 3.4.0, which satisfies requirement ngpiris==3.4.0 from https://files.pythonhosted.org/packages/76/a0/0588bac324aa12b00f07b6f9908d0bbfa93ec2961cfaf43a25d2b03f417a/NGPIris-3.4.0.tar.gz#sha256=1144c7c875fb84dc1848d858c59e3d744ea0354596353cd292cb5d464e33af9c 2022-02-04T13:19:42,196 Removed ngpiris==3.4.0 from https://files.pythonhosted.org/packages/76/a0/0588bac324aa12b00f07b6f9908d0bbfa93ec2961cfaf43a25d2b03f417a/NGPIris-3.4.0.tar.gz#sha256=1144c7c875fb84dc1848d858c59e3d744ea0354596353cd292cb5d464e33af9c from build tracker '/tmp/pip-req-tracker-89r5g_3o' 2022-02-04T13:19:42,211 Created temporary directory: /tmp/pip-unpack-xirpz3lm 2022-02-04T13:19:42,212 Building wheels for collected packages: ngpiris 2022-02-04T13:19:42,220 Created temporary directory: /tmp/pip-wheel-3st9ne2w 2022-02-04T13:19:42,220 Destination directory: /tmp/pip-wheel-3st9ne2w 2022-02-04T13:19:42,225 Building wheel for ngpiris (pyproject.toml): started 2022-02-04T13:19:42,226 Running command /usr/bin/python3 /usr/local/lib/python3.7/dist-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmpmvags5zk 2022-02-04T13:19:44,034 running bdist_wheel 2022-02-04T13:19:44,450 running build 2022-02-04T13:19:44,451 running build_py 2022-02-04T13:19:44,458 creating build 2022-02-04T13:19:44,458 creating build/lib 2022-02-04T13:19:44,460 creating build/lib/NGPIris 2022-02-04T13:19:44,462 copying NGPIris/__init__.py -> build/lib/NGPIris 2022-02-04T13:19:44,467 creating build/lib/tests 2022-02-04T13:19:44,468 copying tests/__init__.py -> build/lib/tests 2022-02-04T13:19:44,471 copying tests/simpleConnectionTest.py -> build/lib/tests 2022-02-04T13:19:44,474 copying tests/test_hcp.py -> build/lib/tests 2022-02-04T13:19:44,477 copying tests/test_cmds.py -> build/lib/tests 2022-02-04T13:19:44,482 creating build/lib/NGPIris/hcp 2022-02-04T13:19:44,483 copying NGPIris/hcp/hcp.py -> build/lib/NGPIris/hcp 2022-02-04T13:19:44,488 copying NGPIris/hcp/__init__.py -> build/lib/NGPIris/hcp 2022-02-04T13:19:44,491 copying NGPIris/hcp/config.py -> build/lib/NGPIris/hcp 2022-02-04T13:19:44,494 copying NGPIris/hcp/helpers.py -> build/lib/NGPIris/hcp 2022-02-04T13:19:44,497 copying NGPIris/hcp/errors.py -> build/lib/NGPIris/hcp 2022-02-04T13:19:44,501 creating build/lib/NGPIris/preproc 2022-02-04T13:19:44,503 copying NGPIris/preproc/__init__.py -> build/lib/NGPIris/preproc 2022-02-04T13:19:44,505 copying NGPIris/preproc/preproc.py -> build/lib/NGPIris/preproc 2022-02-04T13:19:44,510 creating build/lib/NGPIris/cli 2022-02-04T13:19:44,511 copying NGPIris/cli/base.py -> build/lib/NGPIris/cli 2022-02-04T13:19:44,515 copying NGPIris/cli/__init__.py -> build/lib/NGPIris/cli 2022-02-04T13:19:44,517 copying NGPIris/cli/hci_functions.py -> build/lib/NGPIris/cli 2022-02-04T13:19:44,521 copying NGPIris/cli/functions.py -> build/lib/NGPIris/cli 2022-02-04T13:19:44,526 creating build/lib/NGPIris/hci 2022-02-04T13:19:44,527 copying NGPIris/hci/hci.py -> build/lib/NGPIris/hci 2022-02-04T13:19:44,531 copying NGPIris/hci/__init__.py -> build/lib/NGPIris/hci 2022-02-04T13:19:44,534 running egg_info 2022-02-04T13:19:44,590 warning: no files found matching 'freeze.txt' 2022-02-04T13:19:44,590 warning: no files found matching 'profile.json' 2022-02-04T13:19:44,605 writing manifest file 'NGPIris.egg-info/SOURCES.txt' 2022-02-04T13:19:44,609 creating build/lib/tests/data 2022-02-04T13:19:44,611 copying tests/data/test.json -> build/lib/tests/data 2022-02-04T13:19:44,615 copying tests/data/test_reads_R1.fasterq -> build/lib/tests/data 2022-02-04T13:19:44,622 copying tests/data/test_reads_R1.fastq.gz -> build/lib/tests/data 2022-02-04T13:19:44,644 running install 2022-02-04T13:19:44,707 running install_lib 2022-02-04T13:19:44,714 creating build/bdist.linux-armv7l 2022-02-04T13:19:44,715 creating build/bdist.linux-armv7l/wheel 2022-02-04T13:19:44,719 creating build/bdist.linux-armv7l/wheel/NGPIris 2022-02-04T13:19:44,725 creating build/bdist.linux-armv7l/wheel/NGPIris/hcp 2022-02-04T13:19:44,745 creating build/bdist.linux-armv7l/wheel/NGPIris/preproc 2022-02-04T13:19:44,753 creating build/bdist.linux-armv7l/wheel/NGPIris/cli 2022-02-04T13:19:44,769 creating build/bdist.linux-armv7l/wheel/NGPIris/hci 2022-02-04T13:19:44,778 creating build/bdist.linux-armv7l/wheel/tests 2022-02-04T13:19:44,790 creating build/bdist.linux-armv7l/wheel/tests/data 2022-02-04T13:19:44,805 running install_data 2022-02-04T13:19:44,809 creating build/bdist.linux-armv7l/wheel/NGPIris-3.4.0.data 2022-02-04T13:19:44,810 creating build/bdist.linux-armv7l/wheel/NGPIris-3.4.0.data/data 2022-02-04T13:19:44,811 creating build/bdist.linux-armv7l/wheel/NGPIris-3.4.0.data/data/NGPIris 2022-02-04T13:19:44,813 copying config.ini -> build/bdist.linux-armv7l/wheel/NGPIris-3.4.0.data/data/NGPIris 2022-02-04T13:19:44,816 creating build/bdist.linux-armv7l/wheel/NGPIris-3.4.0.data/data/reference 2022-02-04T13:19:44,817 copying reference/covidMetadataAllowedValues.csv -> build/bdist.linux-armv7l/wheel/NGPIris-3.4.0.data/data/reference 2022-02-04T13:19:44,821 copying reference/covidMetadataTemplate.csv -> build/bdist.linux-armv7l/wheel/NGPIris-3.4.0.data/data/reference 2022-02-04T13:19:44,824 creating build/bdist.linux-armv7l/wheel/NGPIris-3.4.0.data/data/testdata 2022-02-04T13:19:44,825 copying tests/data/test_reads_R1.fasterq -> build/bdist.linux-armv7l/wheel/NGPIris-3.4.0.data/data/testdata 2022-02-04T13:19:44,831 copying tests/data/test_reads_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/NGPIris-3.4.0.data/data/testdata 2022-02-04T13:19:44,833 copying tests/data/test.json -> build/bdist.linux-armv7l/wheel/NGPIris-3.4.0.data/data/testdata 2022-02-04T13:19:44,836 running install_egg_info 2022-02-04T13:19:44,850 Copying NGPIris.egg-info to build/bdist.linux-armv7l/wheel/NGPIris-3.4.0-py3.7.egg-info 2022-02-04T13:19:44,875 running install_scripts 2022-02-04T13:19:45,370 Building wheel for ngpiris (pyproject.toml): finished with status 'done' 2022-02-04T13:19:45,386 Created wheel for ngpiris: filename=NGPIris-3.4.0-py3-none-any.whl size=119343 sha256=a6ebd0e230567c71827dc2d3c2cf00fb1a9ecc0d9e88d0f2f72d381c9b714b74 2022-02-04T13:19:45,387 Stored in directory: /tmp/pip-ephem-wheel-cache-pznxdhcp/wheels/1a/89/01/562db27aab3c430c825e1a5168d22b64cba36133562fe53cbc 2022-02-04T13:19:45,413 Successfully built ngpiris 2022-02-04T13:19:45,430 Removed build tracker: '/tmp/pip-req-tracker-89r5g_3o'