2022-02-06T13:48:14,646 Created temporary directory: /tmp/pip-ephem-wheel-cache-noki2_4h
2022-02-06T13:48:14,652 Created temporary directory: /tmp/pip-req-tracker-qk1h76qb
2022-02-06T13:48:14,653 Initialized build tracking at /tmp/pip-req-tracker-qk1h76qb
2022-02-06T13:48:14,654 Created build tracker: /tmp/pip-req-tracker-qk1h76qb
2022-02-06T13:48:14,654 Entered build tracker: /tmp/pip-req-tracker-qk1h76qb
2022-02-06T13:48:14,655 Created temporary directory: /tmp/pip-wheel-jbdrh0m3
2022-02-06T13:48:14,727 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-02-06T13:48:14,733 2 location(s) to search for versions of hydride:
2022-02-06T13:48:14,733 * https://pypi.org/simple/hydride/
2022-02-06T13:48:14,733 * https://www.piwheels.org/simple/hydride/
2022-02-06T13:48:14,734 Fetching project page and analyzing links: https://pypi.org/simple/hydride/
2022-02-06T13:48:14,735 Getting page https://pypi.org/simple/hydride/
2022-02-06T13:48:14,738 Found index url https://pypi.org/simple
2022-02-06T13:48:14,968   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/c1/ca/10e337628717f218cd81d4978284023a49507206b884407939c9ac8259be/hydride-0.1.0-py3-none-any.whl#sha256=a456732a6cf18307244549dabc3384559c6861beb4d3be3dbb2ec64b71d3be19 (from https://pypi.org/simple/hydride/) (requires-python:>=3.7,<4.0)
2022-02-06T13:48:14,971   Found link https://files.pythonhosted.org/packages/1c/b4/d17a34568a8a3f21e6f237ea45dadb2a13a2a0f03465e4de752caf1b47aa/hydride-0.1.0.tar.gz#sha256=a92c48f379900c911d251683cbd67548b2548e6d0ec952d697412260270be44c (from https://pypi.org/simple/hydride/) (requires-python:>=3.7,<4.0), version: 0.1.0
2022-02-06T13:48:14,971   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/82/4b/f96e324dcf4705ec39bb8153fa954a8fc8658a38767c70e4f26cbc1c4981/hydride-1.0.0-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=2c99e07c518b75134414b19a77d5ca24b5463aae892f9bbb3cb3c5f99c54695e (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2022-02-06T13:48:14,972   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/7d/1c/0a440a3a51e68d876c31d4cdf6429cea8af9d0438bbff432f90973027dac/hydride-1.0.0-cp37-cp37m-manylinux1_x86_64.whl#sha256=3678af0ce656b6a1b6566cd038999e9990590f2fc5250835f6b86011267830cf (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2022-02-06T13:48:14,973   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/e9/ec/b654ae4347b4372e5a4c00c330b4d8304bcf7307f34d1d2ace0489ca0bab/hydride-1.0.0-cp37-cp37m-win_amd64.whl#sha256=19eae57c3fd7358e9eceaca9e77993b59b406dfe31897141fe7c6bbda6c541fc (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2022-02-06T13:48:14,973   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/e9/58/0ee938ed1abca37c48533d7af0a22aef36c7a2a64cfacdd27b64d4473640/hydride-1.0.0-cp38-cp38-macosx_10_9_x86_64.whl#sha256=5a996ac07b47be3ae93373175838efd65caf21a24fe14ef052b34f1e4d130c1f (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2022-02-06T13:48:14,974   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/09/47/7c84f8e6b282e2cb4959134620da86b8d1a63ca4a90fe10fed6f3606748e/hydride-1.0.0-cp38-cp38-manylinux1_x86_64.whl#sha256=c74b0b787dedef97bea1b960f8b4d4f9feb10739ff3d8b3de938e283bf54ad21 (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2022-02-06T13:48:14,974   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/6b/94/41346ab7c36be1821b5e4b27cca8047863feaca12f5f324dc09ecd2f0c2f/hydride-1.0.0-cp38-cp38-win_amd64.whl#sha256=376f2a9a247d70cd348a7d47a6ebc0e545cad814038cf1280378af08a98862b3 (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2022-02-06T13:48:14,975   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/af/50/8fa7c180fbabc1406f5fd3e052f19c0b8f17fd4946b8e60275ffb3f288fa/hydride-1.0.0-cp39-cp39-macosx_10_9_x86_64.whl#sha256=6851e01c69ec1914c6f96d263a4fb245a38e37f01f3ce4a243801f7ea9e5c865 (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2022-02-06T13:48:14,975   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/37/af/35a3c5099559d3d84497bd52e0a45e8679b0bf7e25ebe8cc5cbfc2d8c312/hydride-1.0.0-cp39-cp39-manylinux1_x86_64.whl#sha256=90132f27f26bf4e9ed8871be84b96a4eb65e903212e529821cae9f6415a3982b (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2022-02-06T13:48:14,976   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/bc/d2/2b55d85ca01ea592babee40f1fa2ee787a9f467670f996f8f7476c648549/hydride-1.0.0-cp39-cp39-win_amd64.whl#sha256=6e7c2f48f3e9950fe808dbd4e64ff22aad3ded2d79484ae16bc7db18cb8b0b12 (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2022-02-06T13:48:14,977   Found link https://files.pythonhosted.org/packages/00/a4/7b8ca110619fb5c74c555b91223bdfe38c0551c944e6291f8ad3c7bd3ca4/hydride-1.0.0.tar.gz#sha256=0a291cc789e6e2f6850db2c687e6b3ff4a38ee9588185173a699426bbbe84453 (from https://pypi.org/simple/hydride/) (requires-python:>=3.7), version: 1.0.0
2022-02-06T13:48:14,978   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/69/fc/910197f4448fc4c20cf65d66d9fc0c51463eaa0c06e9838fb9c7fbe60e64/hydride-1.1.0-cp310-cp310-macosx_10_9_x86_64.whl#sha256=807b3c88d294d5e0c1d97f468963f5fa30f58173cd36cfb7b6041907fc1d72dc (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2022-02-06T13:48:14,979   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/fe/00/74759e1c2099cb462fb1cfc2b5a4b5131bee9fc172e097e80b6fcae489e8/hydride-1.1.0-cp310-cp310-manylinux1_x86_64.whl#sha256=c7f0827a919e818dccfd2e239d0188f418ee05ce4ff4d4a6e2273e237356ded2 (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2022-02-06T13:48:14,979   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/41/4b/8a5e4f990ac3a3ff08218f1263dc1bc45dc21aea2d5ffa5f8943c7c4913f/hydride-1.1.0-cp310-cp310-win_amd64.whl#sha256=ebb251d668054e29a2a8112a10f2b7ee5623751f5957c3f7a61a71e202530809 (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2022-02-06T13:48:14,980   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/a3/f5/17329c029a5d9a9bac612eb84bd1c32734ad52bbce292427369a4ed1a372/hydride-1.1.0-cp38-cp38-macosx_10_9_x86_64.whl#sha256=0450ac2908d7aeab0bd832f03d7b07fdaaf7f9e4563e81b305efb88d76b080c3 (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2022-02-06T13:48:14,980   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/00/f8/7145de2d08c70588187ddada8a7f1c6bd696a9247973833086651ca6e7b7/hydride-1.1.0-cp38-cp38-manylinux1_x86_64.whl#sha256=09b2dfa4afbcb1d6b321b448e4ae954549bbb9e666513e1cca210d27c4372796 (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2022-02-06T13:48:14,981   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/79/d6/a851b2cec64641a62b94fdb5a02ed715171c098f061e36472f5df66f0c32/hydride-1.1.0-cp38-cp38-win_amd64.whl#sha256=2e249c3b5d4e2faf46570eebfac37870bbd40c91012edc2399ac1dfdd90f8f54 (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2022-02-06T13:48:14,981   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/7e/01/b4ca501199235069110ae8f913122b434422d5ca5e9f72215b48ecf9cf68/hydride-1.1.0-cp39-cp39-macosx_10_9_x86_64.whl#sha256=56fe6e24a071c80236c2969f535c1d0e5e3a25ac48c531086e661b703a40a828 (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2022-02-06T13:48:14,982   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/ed/e5/849f9e8f6aa1dc7b3432388fdd5d2f21be64d4a813399b9862e2b6f5d041/hydride-1.1.0-cp39-cp39-manylinux1_x86_64.whl#sha256=e353294c99aa8e560a9ccd7ae1b19470eb3e552a56d8fda7abb5f9a2fdc00da6 (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2022-02-06T13:48:14,982   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/3b/1e/e691328a2b40c1d6894146542020bc074d488f334c103e3091ae33fa49f2/hydride-1.1.0-cp39-cp39-win_amd64.whl#sha256=20eded7aea4a4d988655ad3f7574e4f139808d3f4b59b70edc898098f1326455 (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2022-02-06T13:48:14,984   Found link https://files.pythonhosted.org/packages/2d/1d/70b2507223bd0d8986068236beb1ad0178e405c51de8718499e4e671cb15/hydride-1.1.0.tar.gz#sha256=612c70b4873a8138d17908a3d6ac3af3b00ccc8d7d39d47c0e0d7a7b9ea6920d (from https://pypi.org/simple/hydride/) (requires-python:>=3.7), version: 1.1.0
2022-02-06T13:48:14,985 Fetching project page and analyzing links: https://www.piwheels.org/simple/hydride/
2022-02-06T13:48:14,985 Getting page https://www.piwheels.org/simple/hydride/
2022-02-06T13:48:14,987 Found index url https://www.piwheels.org/simple
2022-02-06T13:48:15,197   Skipping link: No binaries permitted for hydride: https://www.piwheels.org/simple/hydride/hydride-0.1.0-py3-none-any.whl#sha256=a456732a6cf18307244549dabc3384559c6861beb4d3be3dbb2ec64b71d3be19 (from https://www.piwheels.org/simple/hydride/) (requires-python:>=3.7,<4.0)
2022-02-06T13:48:15,198 Skipping link: not a file: https://www.piwheels.org/simple/hydride/
2022-02-06T13:48:15,198 Skipping link: not a file: https://pypi.org/simple/hydride/
2022-02-06T13:48:15,232 Given no hashes to check 1 links for project 'hydride': discarding no candidates
2022-02-06T13:48:15,262 Collecting hydride==1.1.0
2022-02-06T13:48:15,265   Created temporary directory: /tmp/pip-unpack-7xwnj6v_
2022-02-06T13:48:15,489   Downloading hydride-1.1.0.tar.gz (236 kB)
2022-02-06T13:48:15,843   Added hydride==1.1.0 from https://files.pythonhosted.org/packages/2d/1d/70b2507223bd0d8986068236beb1ad0178e405c51de8718499e4e671cb15/hydride-1.1.0.tar.gz#sha256=612c70b4873a8138d17908a3d6ac3af3b00ccc8d7d39d47c0e0d7a7b9ea6920d to build tracker '/tmp/pip-req-tracker-qk1h76qb'
2022-02-06T13:48:15,864   Created temporary directory: /tmp/pip-build-env-8t6bmdze
2022-02-06T13:48:15,878   Created temporary directory: /tmp/pip-standalone-pip-erln00lz
2022-02-06T13:48:17,692   Installing build dependencies: started
2022-02-06T13:48:17,693   Running command /usr/bin/python3 /tmp/pip-standalone-pip-erln00lz/__env_pip__.zip/pip install --ignore-installed --no-user --prefix /tmp/pip-build-env-8t6bmdze/overlay --no-warn-script-location -v --no-binary hydride --only-binary :none: -i https://pypi.org/simple --extra-index-url https://www.piwheels.org/simple --prefer-binary -- 'setuptools >= 0.30' 'wheel >= 0.30' 'biotite >= 0.28' 'numpy >= 1.14, <= 1.21' 'msgpack >= 0.5.6' 'cython >= 0.29'
2022-02-06T13:48:25,703   Using pip 21.3.1 from /tmp/pip-standalone-pip-erln00lz/__env_pip__.zip/pip (python 3.7)
2022-02-06T13:48:26,530   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-02-06T13:48:32,151   Collecting setuptools>=0.30
2022-02-06T13:48:32,383     Using cached https://www.piwheels.org/simple/setuptools/setuptools-60.8.0-py3-none-any.whl (1.1 MB)
2022-02-06T13:48:33,142   Collecting wheel>=0.30
2022-02-06T13:48:33,181     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-02-06T13:48:34,592   Collecting biotite>=0.28
2022-02-06T13:48:34,622     Downloading https://www.piwheels.org/simple/biotite/biotite-0.32.0-cp37-cp37m-linux_armv7l.whl (32.9 MB)
2022-02-06T13:48:46,773     Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/7a/7f/5384d4c85a2349bd89ff1c0253bff77c7b617e48af201f2d823fc619189a/numpy-1.22.0rc1.zip#sha256=bc991b3f8ea7c0f6703df2bc23c098cfe6f1a3a5e8a3a901eb6a5619275d53ff (from https://pypi.org/simple/numpy/) (requires-python:>=3.8)
2022-02-06T13:48:46,784     Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/a1/4a/8fd68d9a0a9fe5419cdbb697ffc96259fb716bd952c5c64225991add7551/numpy-1.22.0rc2.zip#sha256=01810dc32c5ac4c895b5c0d285497e1eb52038834919f3d2eaddfb9526b20dc9 (from https://pypi.org/simple/numpy/) (requires-python:>=3.8)
2022-02-06T13:48:46,795     Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/17/d4/d3ac79fca81154e8d3e11232967024f480cfdc87dfeef479803716fb20cb/numpy-1.22.0rc3.zip#sha256=0b5642efe2a36f2191102b44bb95ee1479f14c1adb2d7155303e50b2517e43bc (from https://pypi.org/simple/numpy/) (requires-python:>=3.8)
2022-02-06T13:48:46,806     Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/50/e1/9b0c184f04b8cf5f3c941ffa56fbcbe936888bdac9aa7ba6bae405ac752b/numpy-1.22.0.zip#sha256=a955e4128ac36797aaffd49ab44ec74a71c11d6938df83b1285492d277db5397 (from https://pypi.org/simple/numpy/) (requires-python:>=3.8)
2022-02-06T13:48:46,818     Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/0a/c8/a62767a6b374a0dfb02d2a0456e5f56a372cdd1689dbc6ffb6bf1ddedbc0/numpy-1.22.1.zip#sha256=e348ccf5bc5235fc405ab19d53bec215bb373300e5523c7b476cc0da8a5e9973 (from https://pypi.org/simple/numpy/) (requires-python:>=3.8)
2022-02-06T13:48:46,827     Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/e9/6c/c0a8130fe198f27bab92f1b28631e0cc2572295f6b7a31e87efe7448aa1c/numpy-1.22.2.zip#sha256=076aee5a3763d41da6bef9565fdf3cb987606f567cd8b104aded2b38b7b47abf (from https://pypi.org/simple/numpy/) (requires-python:>=3.8)
2022-02-06T13:48:48,294   Collecting numpy<=1.21,>=1.14
2022-02-06T13:48:50,772     Using cached https://www.piwheels.org/simple/numpy/numpy-1.21.0-cp37-cp37m-linux_armv7l.whl (12.3 MB)
2022-02-06T13:48:52,675   Collecting msgpack>=0.5.6
2022-02-06T13:48:52,756     Using cached https://www.piwheels.org/simple/msgpack/msgpack-1.0.3-cp37-cp37m-linux_armv7l.whl (267 kB)
2022-02-06T13:48:57,710   Collecting cython>=0.29
2022-02-06T13:48:58,223     Using cached https://www.piwheels.org/simple/cython/Cython-0.29.27-cp37-cp37m-linux_armv7l.whl (2.3 MB)
2022-02-06T13:48:59,284   Collecting networkx>=2.0
2022-02-06T13:48:59,712     Using cached https://www.piwheels.org/simple/networkx/networkx-2.6.3-py3-none-any.whl (1.9 MB)
2022-02-06T13:49:00,825   Collecting requests>=2.12
2022-02-06T13:49:00,864     Using cached https://www.piwheels.org/simple/requests/requests-2.27.1-py2.py3-none-any.whl (63 kB)
2022-02-06T13:49:01,501   Collecting idna<4,>=2.5
2022-02-06T13:49:01,542     Using cached https://www.piwheels.org/simple/idna/idna-3.3-py3-none-any.whl (64 kB)
2022-02-06T13:49:01,971   Collecting certifi>=2017.4.17
2022-02-06T13:49:02,026     Using cached https://www.piwheels.org/simple/certifi/certifi-2021.10.8-py2.py3-none-any.whl (151 kB)
2022-02-06T13:49:02,496   Collecting charset-normalizer~=2.0.0
2022-02-06T13:49:02,533     Using cached https://www.piwheels.org/simple/charset-normalizer/charset_normalizer-2.0.11-py3-none-any.whl (44 kB)
2022-02-06T13:49:03,308   Collecting urllib3<1.27,>=1.21.1
2022-02-06T13:49:03,362     Using cached https://www.piwheels.org/simple/urllib3/urllib3-1.26.8-py2.py3-none-any.whl (155 kB)
2022-02-06T13:49:08,257   Installing collected packages: urllib3, idna, charset-normalizer, certifi, requests, numpy, networkx, msgpack, wheel, setuptools, cython, biotite
2022-02-06T13:49:09,703     Creating /tmp/pip-build-env-8t6bmdze/overlay/bin
2022-02-06T13:49:09,706     changing mode of /tmp/pip-build-env-8t6bmdze/overlay/bin/normalizer to 755
2022-02-06T13:49:25,847     changing mode of /tmp/pip-build-env-8t6bmdze/overlay/bin/f2py to 755
2022-02-06T13:49:25,850     changing mode of /tmp/pip-build-env-8t6bmdze/overlay/bin/f2py3 to 755
2022-02-06T13:49:25,853     changing mode of /tmp/pip-build-env-8t6bmdze/overlay/bin/f2py3.7 to 755
2022-02-06T13:49:36,368     changing mode of /tmp/pip-build-env-8t6bmdze/overlay/bin/wheel to 755
2022-02-06T13:49:45,009     changing mode of /tmp/pip-build-env-8t6bmdze/overlay/bin/cygdb to 755
2022-02-06T13:49:45,012     changing mode of /tmp/pip-build-env-8t6bmdze/overlay/bin/cython to 755
2022-02-06T13:49:45,015     changing mode of /tmp/pip-build-env-8t6bmdze/overlay/bin/cythonize to 755
2022-02-06T13:49:54,524   Successfully installed biotite-0.32.0 certifi-2021.10.8 charset-normalizer-2.0.11 cython-0.29.27 idna-3.3 msgpack-1.0.3 networkx-2.6.3 numpy-1.21.0 requests-2.27.1 setuptools-60.8.0 urllib3-1.26.8 wheel-0.37.1
2022-02-06T13:49:54,697   WARNING: You are using pip version 21.3.1; however, version 22.0.2 is available.
2022-02-06T13:49:54,698   You should consider upgrading via the '/usr/bin/python3 -m pip install --upgrade pip' command.
2022-02-06T13:49:55,327   Installing build dependencies: finished with status 'done'
2022-02-06T13:49:55,377   Getting requirements to build wheel: started
2022-02-06T13:49:55,378   Running command /usr/bin/python3 /usr/local/lib/python3.7/dist-packages/pip/_vendor/pep517/in_process/_in_process.py get_requires_for_build_wheel /tmp/tmp6d3ii0yd
2022-02-06T13:50:00,456   Traceback (most recent call last):
2022-02-06T13:50:00,457     File "/usr/local/lib/python3.7/dist-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in <module>
2022-02-06T13:50:00,458       main()
2022-02-06T13:50:00,459     File "/usr/local/lib/python3.7/dist-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main
2022-02-06T13:50:00,459       json_out['return_val'] = hook(**hook_input['kwargs'])
2022-02-06T13:50:00,460     File "/usr/local/lib/python3.7/dist-packages/pip/_vendor/pep517/in_process/_in_process.py", line 130, in get_requires_for_build_wheel
2022-02-06T13:50:00,460       return hook(config_settings)
2022-02-06T13:50:00,461     File "/usr/local/lib/python3.7/dist-packages/setuptools/build_meta.py", line 163, in get_requires_for_build_wheel
2022-02-06T13:50:00,461       config_settings, requirements=['wheel'])
2022-02-06T13:50:00,462     File "/usr/local/lib/python3.7/dist-packages/setuptools/build_meta.py", line 143, in _get_build_requires
2022-02-06T13:50:00,462       self.run_setup()
2022-02-06T13:50:00,463     File "/usr/local/lib/python3.7/dist-packages/setuptools/build_meta.py", line 268, in run_setup
2022-02-06T13:50:00,463       self).run_setup(setup_script=setup_script)
2022-02-06T13:50:00,464     File "/usr/local/lib/python3.7/dist-packages/setuptools/build_meta.py", line 158, in run_setup
2022-02-06T13:50:00,464       exec(compile(code, __file__, 'exec'), locals())
2022-02-06T13:50:00,465     File "setup.py", line 127, in <module>
2022-02-06T13:50:00,465       for mol in get_protonation_variants():
2022-02-06T13:50:00,465     File "setup.py", line 92, in get_protonation_variants
2022-02-06T13:50:00,466       with open("prot_variants.msgpack", "rb") as file:
2022-02-06T13:50:00,466   FileNotFoundError: [Errno 2] No such file or directory: 'prot_variants.msgpack'
2022-02-06T13:50:00,783   Getting requirements to build wheel: finished with status 'error'
2022-02-06T13:50:00,788 WARNING: Discarding https://files.pythonhosted.org/packages/2d/1d/70b2507223bd0d8986068236beb1ad0178e405c51de8718499e4e671cb15/hydride-1.1.0.tar.gz#sha256=612c70b4873a8138d17908a3d6ac3af3b00ccc8d7d39d47c0e0d7a7b9ea6920d (from https://pypi.org/simple/hydride/) (requires-python:>=3.7). Command errored out with exit status 1: /usr/bin/python3 /usr/local/lib/python3.7/dist-packages/pip/_vendor/pep517/in_process/_in_process.py get_requires_for_build_wheel /tmp/tmp6d3ii0yd Check the logs for full command output.
2022-02-06T13:50:00,791 ERROR: Could not find a version that satisfies the requirement hydride==1.1.0 (from versions: 0.1.0, 1.0.0, 1.1.0)
2022-02-06T13:50:00,792 ERROR: No matching distribution found for hydride==1.1.0
2022-02-06T13:50:00,792 Exception information:
2022-02-06T13:50:00,792 Traceback (most recent call last):
2022-02-06T13:50:00,792   File "/usr/local/lib/python3.7/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 349, in resolve
2022-02-06T13:50:00,792     self._add_to_criteria(self.state.criteria, r, parent=None)
2022-02-06T13:50:00,792   File "/usr/local/lib/python3.7/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 174, in _add_to_criteria
2022-02-06T13:50:00,792     raise RequirementsConflicted(criterion)
2022-02-06T13:50:00,792 pip._vendor.resolvelib.resolvers.RequirementsConflicted: Requirements conflict: SpecifierRequirement('hydride==1.1.0')
2022-02-06T13:50:00,792 
2022-02-06T13:50:00,792 During handling of the above exception, another exception occurred:
2022-02-06T13:50:00,792 
2022-02-06T13:50:00,792 Traceback (most recent call last):
2022-02-06T13:50:00,792   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 93, in resolve
2022-02-06T13:50:00,792     collected.requirements, max_rounds=try_to_avoid_resolution_too_deep
2022-02-06T13:50:00,792   File "/usr/local/lib/python3.7/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 482, in resolve
2022-02-06T13:50:00,792     state = resolution.resolve(requirements, max_rounds=max_rounds)
2022-02-06T13:50:00,792   File "/usr/local/lib/python3.7/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 351, in resolve
2022-02-06T13:50:00,792     raise ResolutionImpossible(e.criterion.information)
2022-02-06T13:50:00,792 pip._vendor.resolvelib.resolvers.ResolutionImpossible: [RequirementInformation(requirement=SpecifierRequirement('hydride==1.1.0'), parent=None)]
2022-02-06T13:50:00,792 
2022-02-06T13:50:00,792 The above exception was the direct cause of the following exception:
2022-02-06T13:50:00,792 
2022-02-06T13:50:00,792 Traceback (most recent call last):
2022-02-06T13:50:00,792   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/base_command.py", line 164, in exc_logging_wrapper
2022-02-06T13:50:00,792     status = run_func(*args)
2022-02-06T13:50:00,792   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2022-02-06T13:50:00,792     return func(self, options, args)
2022-02-06T13:50:00,792   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/commands/wheel.py", line 144, in run
2022-02-06T13:50:00,792     requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
2022-02-06T13:50:00,792   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 101, in resolve
2022-02-06T13:50:00,792     raise error from e
2022-02-06T13:50:00,792 pip._internal.exceptions.DistributionNotFound: No matching distribution found for hydride==1.1.0
2022-02-06T13:50:00,806 Removed hydride==1.1.0 from https://files.pythonhosted.org/packages/2d/1d/70b2507223bd0d8986068236beb1ad0178e405c51de8718499e4e671cb15/hydride-1.1.0.tar.gz#sha256=612c70b4873a8138d17908a3d6ac3af3b00ccc8d7d39d47c0e0d7a7b9ea6920d from build tracker '/tmp/pip-req-tracker-qk1h76qb'
2022-02-06T13:50:00,807 Removed build tracker: '/tmp/pip-req-tracker-qk1h76qb'