2022-02-07T15:23:23,816 Created temporary directory: /tmp/pip-ephem-wheel-cache-l0vpb4gx
2022-02-07T15:23:23,823 Created temporary directory: /tmp/pip-req-tracker-mxco8lnf
2022-02-07T15:23:23,824 Initialized build tracking at /tmp/pip-req-tracker-mxco8lnf
2022-02-07T15:23:23,824 Created build tracker: /tmp/pip-req-tracker-mxco8lnf
2022-02-07T15:23:23,825 Entered build tracker: /tmp/pip-req-tracker-mxco8lnf
2022-02-07T15:23:23,826 Created temporary directory: /tmp/pip-wheel-r8_oe0pe
2022-02-07T15:23:23,893 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-02-07T15:23:23,899 2 location(s) to search for versions of mclumix:
2022-02-07T15:23:23,899 * https://pypi.org/simple/mclumix/
2022-02-07T15:23:23,899 * https://www.piwheels.org/simple/mclumix/
2022-02-07T15:23:23,900 Fetching project page and analyzing links: https://pypi.org/simple/mclumix/
2022-02-07T15:23:23,901 Getting page https://pypi.org/simple/mclumix/
2022-02-07T15:23:23,904 Found index url https://pypi.org/simple
2022-02-07T15:23:24,126   Found link https://files.pythonhosted.org/packages/a0/ed/9f543ae58042cacdcda86ade069e9b34bddbd66614dd0e6c1af2a8aea017/mclumix-0.0.post1.tar.gz#sha256=1c35621ad405c55a6538993ca4fb8c5d10d57fd16286c01be71c4b7cd0443ce5 (from https://pypi.org/simple/mclumix/) (requires-python:>3.6), version: 0.0.post1
2022-02-07T15:23:24,128   Found link https://files.pythonhosted.org/packages/9d/3e/19d4b8e84efd9c7815631dcf977d53c4ae624e5882c6d09800a5a01fe1e0/mclumix-0.0.0.0.5.tar.gz#sha256=2b5473aaaf82ed9097ee1f59c0549848b863260edc38f5269ea2fad6d4288da5 (from https://pypi.org/simple/mclumix/) (requires-python:>3.6), version: 0.0.0.0.5
2022-02-07T15:23:24,129   Found link https://files.pythonhosted.org/packages/cf/3d/1d226c3fea26e55a7576020837cd0997ab156171601c72f7b97e2102d543/mclumix-0.0.0.1.tar.gz#sha256=520a575c8ed21f43f34f70e243e04ae9e3231ddee82e3787206376d943b054b0 (from https://pypi.org/simple/mclumix/) (requires-python:>3.6), version: 0.0.0.1
2022-02-07T15:23:24,130   Found link https://files.pythonhosted.org/packages/f0/03/b0027982c8a226e1623cdf32d06a2fc36b754af859b656c92b4672fb8651/mclumix-0.0.1.tar.gz#sha256=25cf56d8b38789b96c60c6c1daa75d9fbda2c7d2e6acac7e75e88d376e94966b (from https://pypi.org/simple/mclumix/) (requires-python:>3.6), version: 0.0.1
2022-02-07T15:23:24,132   Found link https://files.pythonhosted.org/packages/49/a6/5b1322f5a10ff634ba6ffbf0c2d0b1361d7f274b38d9d73ce022e67a565b/mclumix-0.0.2.tar.gz#sha256=9976abd631f7bf9cfd375910a377dc0f9e6a0215456d3a713207aedfe4a2518b (from https://pypi.org/simple/mclumix/) (requires-python:>3.6), version: 0.0.2
2022-02-07T15:23:24,133   Found link https://files.pythonhosted.org/packages/2e/55/46b850c79e0e5e5d084baf516f962e8a6635d4eb985e96a1084bf3c17b1e/mclumix-0.0.3.tar.gz#sha256=4e4446b67ddae69eebf797cfe847695b1099893af5fdd9c8782e8b69910b145c (from https://pypi.org/simple/mclumix/) (requires-python:>3.6), version: 0.0.3
2022-02-07T15:23:24,134   Found link https://files.pythonhosted.org/packages/d1/d9/90cc6a0ba23818baef9aa2a6d09f69fee1d947d5cc0700d86cfa81e27746/mclumix-0.0.4.tar.gz#sha256=587e91c3a7ef194f5111111c207618a8785dc63772cdb7925caae15d61923d5f (from https://pypi.org/simple/mclumix/) (requires-python:>3.6), version: 0.0.4
2022-02-07T15:23:24,135   Found link https://files.pythonhosted.org/packages/a1/e9/c872dc3e46b8b2782ae40f886160b76b22d77d60995f5f9cd614ff928cc3/mclumix-0.0.5.tar.gz#sha256=39d1907ce0a773789789ac8f33b05225daace4fc4ef7d404d2d57bf05025db56 (from https://pypi.org/simple/mclumix/) (requires-python:>3.6), version: 0.0.5
2022-02-07T15:23:24,136   Found link https://files.pythonhosted.org/packages/1d/65/a2af1a523876b836d499640fb2d3665637542aa8b03aa31bb19b24443f46/mclumix-0.0.6.tar.gz#sha256=7ea22bbdf1b7d67f409b6c3b732de21871785e7c6921acb906ce82296ba260a8 (from https://pypi.org/simple/mclumix/) (requires-python:>3.6), version: 0.0.6
2022-02-07T15:23:24,137 Fetching project page and analyzing links: https://www.piwheels.org/simple/mclumix/
2022-02-07T15:23:24,138 Getting page https://www.piwheels.org/simple/mclumix/
2022-02-07T15:23:24,140 Found index url https://www.piwheels.org/simple
2022-02-07T15:23:24,370   Skipping link: No binaries permitted for mclumix: https://www.piwheels.org/simple/mclumix/mclumix-0.0.0.0.5-py3-none-any.whl#sha256=a10c6cdbfae622a9a95a8e5cf928e121ca1316757cfbb8f685e4b7eb8aa92f95 (from https://www.piwheels.org/simple/mclumix/) (requires-python:>3.6)
2022-02-07T15:23:24,371   Skipping link: No binaries permitted for mclumix: https://www.piwheels.org/simple/mclumix/mclumix-0.0.0.1-py3-none-any.whl#sha256=e5792f85954734cfd2b346918742e004233c3f87cef4d48177b7cfe54b648cae (from https://www.piwheels.org/simple/mclumix/) (requires-python:>3.6)
2022-02-07T15:23:24,371   Skipping link: No binaries permitted for mclumix: https://www.piwheels.org/simple/mclumix/mclumix-0.0.1-py3-none-any.whl#sha256=cf1bbdf93eadb6de4777409540c0573cb73a811deef9dc035d23f4ea05980de9 (from https://www.piwheels.org/simple/mclumix/) (requires-python:>3.6)
2022-02-07T15:23:24,372   Skipping link: No binaries permitted for mclumix: https://www.piwheels.org/simple/mclumix/mclumix-0.0.2-py3-none-any.whl#sha256=476597fdf15866acc26e14142987bdfe47e7032af350bb2cd76c01ab69faa92b (from https://www.piwheels.org/simple/mclumix/) (requires-python:>3.6)
2022-02-07T15:23:24,372   Skipping link: No binaries permitted for mclumix: https://www.piwheels.org/simple/mclumix/mclumix-0.0.3-py3-none-any.whl#sha256=1594f88f6dcc449efe54942726a633b6440b1d574e0487a736c1f9235d814099 (from https://www.piwheels.org/simple/mclumix/) (requires-python:>3.6)
2022-02-07T15:23:24,373   Skipping link: No binaries permitted for mclumix: https://www.piwheels.org/simple/mclumix/mclumix-0.0.4-py3-none-any.whl#sha256=7d410c2d61af729ac0459130bafafa544843d86b3821b38481706a13594d16f9 (from https://www.piwheels.org/simple/mclumix/) (requires-python:>3.6)
2022-02-07T15:23:24,373   Skipping link: No binaries permitted for mclumix: https://www.piwheels.org/simple/mclumix/mclumix-0.0.post1-py3-none-any.whl#sha256=4c8955a5d364d5bb04880c6c7987c73f1a90daaeb71ba82e6fa7c0ce4282568e (from https://www.piwheels.org/simple/mclumix/) (requires-python:>3.6)
2022-02-07T15:23:24,374 Skipping link: not a file: https://www.piwheels.org/simple/mclumix/
2022-02-07T15:23:24,374 Skipping link: not a file: https://pypi.org/simple/mclumix/
2022-02-07T15:23:24,411 Given no hashes to check 1 links for project 'mclumix': discarding no candidates
2022-02-07T15:23:24,442 Collecting mclumix==0.0.5
2022-02-07T15:23:24,446   Created temporary directory: /tmp/pip-unpack-fgko8hzp
2022-02-07T15:23:24,672   Downloading mclumix-0.0.5.tar.gz (56 kB)
2022-02-07T15:23:24,927   Added mclumix==0.0.5 from https://files.pythonhosted.org/packages/a1/e9/c872dc3e46b8b2782ae40f886160b76b22d77d60995f5f9cd614ff928cc3/mclumix-0.0.5.tar.gz#sha256=39d1907ce0a773789789ac8f33b05225daace4fc4ef7d404d2d57bf05025db56 to build tracker '/tmp/pip-req-tracker-mxco8lnf'
2022-02-07T15:23:24,928   Running setup.py (path:/tmp/pip-wheel-r8_oe0pe/mclumix_2bd1d8e0edbb47848b5d9fbef374ede7/setup.py) egg_info for package mclumix
2022-02-07T15:23:24,930   Created temporary directory: /tmp/pip-pip-egg-info-one54hew
2022-02-07T15:23:24,930   Preparing metadata (setup.py): started
2022-02-07T15:23:24,931   Running command python setup.py egg_info
2022-02-07T15:23:26,452   Warning: 'keywords' should be a list, got type 'tuple'
2022-02-07T15:23:26,854   running egg_info
2022-02-07T15:23:26,859   creating /tmp/pip-pip-egg-info-one54hew/mclumix.egg-info
2022-02-07T15:23:26,874   writing manifest file '/tmp/pip-pip-egg-info-one54hew/mclumix.egg-info/SOURCES.txt'
2022-02-07T15:23:26,916   writing manifest file '/tmp/pip-pip-egg-info-one54hew/mclumix.egg-info/SOURCES.txt'
2022-02-07T15:23:27,042   Preparing metadata (setup.py): finished with status 'done'
2022-02-07T15:23:27,049   Source in /tmp/pip-wheel-r8_oe0pe/mclumix_2bd1d8e0edbb47848b5d9fbef374ede7 has version 0.0.5, which satisfies requirement mclumix==0.0.5 from https://files.pythonhosted.org/packages/a1/e9/c872dc3e46b8b2782ae40f886160b76b22d77d60995f5f9cd614ff928cc3/mclumix-0.0.5.tar.gz#sha256=39d1907ce0a773789789ac8f33b05225daace4fc4ef7d404d2d57bf05025db56
2022-02-07T15:23:27,051   Removed mclumix==0.0.5 from https://files.pythonhosted.org/packages/a1/e9/c872dc3e46b8b2782ae40f886160b76b22d77d60995f5f9cd614ff928cc3/mclumix-0.0.5.tar.gz#sha256=39d1907ce0a773789789ac8f33b05225daace4fc4ef7d404d2d57bf05025db56 from build tracker '/tmp/pip-req-tracker-mxco8lnf'
2022-02-07T15:23:27,064 Created temporary directory: /tmp/pip-unpack-sualzcp5
2022-02-07T15:23:27,065 Building wheels for collected packages: mclumix
2022-02-07T15:23:27,073   Created temporary directory: /tmp/pip-wheel-omfvyjvc
2022-02-07T15:23:27,074   Building wheel for mclumix (setup.py): started
2022-02-07T15:23:27,074   Destination directory: /tmp/pip-wheel-omfvyjvc
2022-02-07T15:23:27,075   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-r8_oe0pe/mclumix_2bd1d8e0edbb47848b5d9fbef374ede7/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-r8_oe0pe/mclumix_2bd1d8e0edbb47848b5d9fbef374ede7/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-omfvyjvc
2022-02-07T15:23:28,619   Warning: 'keywords' should be a list, got type 'tuple'
2022-02-07T15:23:29,070   running bdist_wheel
2022-02-07T15:23:29,078   running build
2022-02-07T15:23:29,078   running build_py
2022-02-07T15:23:29,087   creating build
2022-02-07T15:23:29,088   creating build/lib
2022-02-07T15:23:29,089   creating build/lib/mclumi
2022-02-07T15:23:29,091   copying mclumi/__init__.py -> build/lib/mclumi
2022-02-07T15:23:29,095   copying mclumi/Main.py -> build/lib/mclumi
2022-02-07T15:23:29,099   copying mclumi/Path.py -> build/lib/mclumi
2022-02-07T15:23:29,104   creating build/lib/mclumi/external
2022-02-07T15:23:29,105   copying mclumi/external/__init__.py -> build/lib/mclumi/external
2022-02-07T15:23:29,108   copying mclumi/external/UMItoolsSamMethods.py -> build/lib/mclumi/external
2022-02-07T15:23:29,115   creating build/lib/mclumi/fastq
2022-02-07T15:23:29,117   copying mclumi/fastq/__init__.py -> build/lib/mclumi/fastq
2022-02-07T15:23:29,120   copying mclumi/fastq/Write.py -> build/lib/mclumi/fastq
2022-02-07T15:23:29,123   copying mclumi/fastq/Read.py -> build/lib/mclumi/fastq
2022-02-07T15:23:29,128   creating build/lib/mclumi/trim
2022-02-07T15:23:29,130   copying mclumi/trim/Reader.py -> build/lib/mclumi/trim
2022-02-07T15:23:29,133   copying mclumi/trim/__init__.py -> build/lib/mclumi/trim
2022-02-07T15:23:29,137   copying mclumi/trim/SeqRuleOut.py -> build/lib/mclumi/trim
2022-02-07T15:23:29,140   copying mclumi/trim/Fixed.py -> build/lib/mclumi/trim
2022-02-07T15:23:29,144   copying mclumi/trim/Template.py -> build/lib/mclumi/trim
2022-02-07T15:23:29,148   copying mclumi/trim/BCRuleOut.py -> build/lib/mclumi/trim
2022-02-07T15:23:29,151   copying mclumi/trim/UMIRuleOut.py -> build/lib/mclumi/trim
2022-02-07T15:23:29,155   copying mclumi/trim/Filter.py -> build/lib/mclumi/trim
2022-02-07T15:23:29,161   creating build/lib/mclumi/util
2022-02-07T15:23:29,163   copying mclumi/util/Console.py -> build/lib/mclumi/util
2022-02-07T15:23:29,167   copying mclumi/util/Reader.py -> build/lib/mclumi/util
2022-02-07T15:23:29,171   copying mclumi/util/Writer.py -> build/lib/mclumi/util
2022-02-07T15:23:29,174   copying mclumi/util/__init__.py -> build/lib/mclumi/util
2022-02-07T15:23:29,178   copying mclumi/util/Hamming.py -> build/lib/mclumi/util
2022-02-07T15:23:29,181   copying mclumi/util/Single.py -> build/lib/mclumi/util
2022-02-07T15:23:29,184   copying mclumi/util/Folder.py -> build/lib/mclumi/util
2022-02-07T15:23:29,187   copying mclumi/util/Number.py -> build/lib/mclumi/util
2022-02-07T15:23:29,192   creating build/lib/mclumi/deduplicate
2022-02-07T15:23:29,193   copying mclumi/deduplicate/__init__.py -> build/lib/mclumi/deduplicate
2022-02-07T15:23:29,198   creating build/lib/mclumi/network
2022-02-07T15:23:29,199   copying mclumi/network/__init__.py -> build/lib/mclumi/network
2022-02-07T15:23:29,203   copying mclumi/network/Adjacency.py -> build/lib/mclumi/network
2022-02-07T15:23:29,207   copying mclumi/network/Edge.py -> build/lib/mclumi/network
2022-02-07T15:23:29,210   copying mclumi/network/CC.py -> build/lib/mclumi/network
2022-02-07T15:23:29,215   creating build/lib/mclumi/align
2022-02-07T15:23:29,217   copying mclumi/align/__init__.py -> build/lib/mclumi/align
2022-02-07T15:23:29,220   copying mclumi/align/Write.py -> build/lib/mclumi/align
2022-02-07T15:23:29,223   copying mclumi/align/BundlePos.py -> build/lib/mclumi/align
2022-02-07T15:23:29,227   copying mclumi/align/Read.py -> build/lib/mclumi/align
2022-02-07T15:23:29,232   creating build/lib/mclumi/plot
2022-02-07T15:23:29,233   copying mclumi/plot/__init__.py -> build/lib/mclumi/plot
2022-02-07T15:23:29,237   copying mclumi/plot/Graph.py -> build/lib/mclumi/plot
2022-02-07T15:23:29,242   creating build/lib/mclumi/deduplicate/monomer
2022-02-07T15:23:29,244   copying mclumi/deduplicate/monomer/__init__.py -> build/lib/mclumi/deduplicate/monomer
2022-02-07T15:23:29,247   copying mclumi/deduplicate/monomer/Adjacency.py -> build/lib/mclumi/deduplicate/monomer
2022-02-07T15:23:29,251   copying mclumi/deduplicate/monomer/Directional.py -> build/lib/mclumi/deduplicate/monomer
2022-02-07T15:23:29,254   copying mclumi/deduplicate/monomer/DedupPos_test.py -> build/lib/mclumi/deduplicate/monomer
2022-02-07T15:23:29,260   copying mclumi/deduplicate/monomer/DedupBasic.py -> build/lib/mclumi/deduplicate/monomer
2022-02-07T15:23:29,266   copying mclumi/deduplicate/monomer/Build_test.py -> build/lib/mclumi/deduplicate/monomer
2022-02-07T15:23:29,270   copying mclumi/deduplicate/monomer/Build.py -> build/lib/mclumi/deduplicate/monomer
2022-02-07T15:23:29,274   copying mclumi/deduplicate/monomer/MarkovClustering.py -> build/lib/mclumi/deduplicate/monomer
2022-02-07T15:23:29,278   copying mclumi/deduplicate/monomer/DedupGene.py -> build/lib/mclumi/deduplicate/monomer
2022-02-07T15:23:29,285   copying mclumi/deduplicate/monomer/DedupSC.py -> build/lib/mclumi/deduplicate/monomer
2022-02-07T15:23:29,290   copying mclumi/deduplicate/monomer/DedupPos.py -> build/lib/mclumi/deduplicate/monomer
2022-02-07T15:23:29,295   copying mclumi/deduplicate/monomer/Cluster.py -> build/lib/mclumi/deduplicate/monomer
2022-02-07T15:23:29,299   running egg_info
2022-02-07T15:23:29,371   writing manifest file 'mclumix.egg-info/SOURCES.txt'
2022-02-07T15:23:29,397   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-02-07T15:23:29,397     setuptools.SetuptoolsDeprecationWarning,
2022-02-07T15:23:29,401   running install
2022-02-07T15:23:29,463   running install_lib
2022-02-07T15:23:29,470   creating build/bdist.linux-armv7l
2022-02-07T15:23:29,470   creating build/bdist.linux-armv7l/wheel
2022-02-07T15:23:29,474   creating build/bdist.linux-armv7l/wheel/mclumi
2022-02-07T15:23:29,477   creating build/bdist.linux-armv7l/wheel/mclumi/external
2022-02-07T15:23:29,498   creating build/bdist.linux-armv7l/wheel/mclumi/fastq
2022-02-07T15:23:29,511   creating build/bdist.linux-armv7l/wheel/mclumi/trim
2022-02-07T15:23:29,545   creating build/bdist.linux-armv7l/wheel/mclumi/util
2022-02-07T15:23:29,574   creating build/bdist.linux-armv7l/wheel/mclumi/deduplicate
2022-02-07T15:23:29,580   creating build/bdist.linux-armv7l/wheel/mclumi/deduplicate/monomer
2022-02-07T15:23:29,646   creating build/bdist.linux-armv7l/wheel/mclumi/network
2022-02-07T15:23:29,662   creating build/bdist.linux-armv7l/wheel/mclumi/align
2022-02-07T15:23:29,678   creating build/bdist.linux-armv7l/wheel/mclumi/plot
2022-02-07T15:23:29,685   running install_egg_info
2022-02-07T15:23:29,700   Copying mclumix.egg-info to build/bdist.linux-armv7l/wheel/mclumix-0.0.5-py3.7.egg-info
2022-02-07T15:23:29,722   running install_scripts
2022-02-07T15:23:30,277   Building wheel for mclumix (setup.py): finished with status 'done'
2022-02-07T15:23:30,283   Created wheel for mclumix: filename=mclumix-0.0.5-py3-none-any.whl size=75047 sha256=6f6b93b454c2e7a4d2b94ccc71f56e7b8205e9b3f98b9195250a3ac565243cbf
2022-02-07T15:23:30,284   Stored in directory: /tmp/pip-ephem-wheel-cache-l0vpb4gx/wheels/cb/3b/da/6d4b552805e297ef8b474bfcfe5b71000597a82fbc48184dbb
2022-02-07T15:23:30,308 Successfully built mclumix
2022-02-07T15:23:30,318 Removed build tracker: '/tmp/pip-req-tracker-mxco8lnf'