2022-02-07T20:08:45,660 Created temporary directory: /tmp/pip-ephem-wheel-cache-v3mysd9k
2022-02-07T20:08:45,666 Created temporary directory: /tmp/pip-req-tracker-mvho4b7i
2022-02-07T20:08:45,667 Initialized build tracking at /tmp/pip-req-tracker-mvho4b7i
2022-02-07T20:08:45,668 Created build tracker: /tmp/pip-req-tracker-mvho4b7i
2022-02-07T20:08:45,668 Entered build tracker: /tmp/pip-req-tracker-mvho4b7i
2022-02-07T20:08:45,669 Created temporary directory: /tmp/pip-wheel-w4tu8_pv
2022-02-07T20:08:45,735 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-02-07T20:08:45,741 2 location(s) to search for versions of radtext:
2022-02-07T20:08:45,741 * https://pypi.org/simple/radtext/
2022-02-07T20:08:45,741 * https://www.piwheels.org/simple/radtext/
2022-02-07T20:08:45,742 Fetching project page and analyzing links: https://pypi.org/simple/radtext/
2022-02-07T20:08:45,743 Getting page https://pypi.org/simple/radtext/
2022-02-07T20:08:45,747 Found index url https://pypi.org/simple
2022-02-07T20:08:45,952   Skipping link: No binaries permitted for radtext: https://files.pythonhosted.org/packages/bd/c5/c3c61f0eb888f928af23265f4465e7097467f5d9792c62982f7e893577f6/radtext-1.0.dev1-py3-none-any.whl#sha256=0f67e17f931149f16cef5d15a3c4aad20788e8917fb8f930bf24914ab638c285 (from https://pypi.org/simple/radtext/) (requires-python:>=3.6)
2022-02-07T20:08:45,954   Found link https://files.pythonhosted.org/packages/42/99/926b54f940483c1a582c4b46a73eca9a154bc2a033a3eece3970d5a9ff55/radtext-1.0.dev1.tar.gz#sha256=d0062f808d7d38e2c1a827de5ad1ffde14d1c11ab5d40a477523fedc083f34bb (from https://pypi.org/simple/radtext/) (requires-python:>=3.6), version: 1.0.dev1
2022-02-07T20:08:45,954   Skipping link: No binaries permitted for radtext: https://files.pythonhosted.org/packages/f3/bf/9f93de807e40fde7a9203da84741243e6d06b39a9a3bb0b7a4bbbaad09d0/radtext-1.0.dev2-py3-none-any.whl#sha256=b25fdeab34f451adc73693cee97afee416f5900ca53f238800fa9d9ba44ff2be (from https://pypi.org/simple/radtext/) (requires-python:>=3.6)
2022-02-07T20:08:45,956   Found link https://files.pythonhosted.org/packages/1f/04/ebebc2522027b1b6f3e0576ec8b669885fbed8e2598018b8dc641a696f43/radtext-1.0.dev2.tar.gz#sha256=d062ad13f02e54bed472530d936802dbc55fd867c300d0dd66ed02604c81b806 (from https://pypi.org/simple/radtext/) (requires-python:>=3.6), version: 1.0.dev2
2022-02-07T20:08:45,956 Fetching project page and analyzing links: https://www.piwheels.org/simple/radtext/
2022-02-07T20:08:45,957 Getting page https://www.piwheels.org/simple/radtext/
2022-02-07T20:08:45,959 Found index url https://www.piwheels.org/simple
2022-02-07T20:08:46,184 Skipping link: not a file: https://www.piwheels.org/simple/radtext/
2022-02-07T20:08:46,185 Skipping link: not a file: https://pypi.org/simple/radtext/
2022-02-07T20:08:46,219 Given no hashes to check 1 links for project 'radtext': discarding no candidates
2022-02-07T20:08:46,250 Collecting radtext==1.0.dev1
2022-02-07T20:08:46,253   Created temporary directory: /tmp/pip-unpack-i3eez2hl
2022-02-07T20:08:46,532   Downloading radtext-1.0.dev1.tar.gz (2.3 MB)
2022-02-07T20:08:48,214   Added radtext==1.0.dev1 from https://files.pythonhosted.org/packages/42/99/926b54f940483c1a582c4b46a73eca9a154bc2a033a3eece3970d5a9ff55/radtext-1.0.dev1.tar.gz#sha256=d0062f808d7d38e2c1a827de5ad1ffde14d1c11ab5d40a477523fedc083f34bb to build tracker '/tmp/pip-req-tracker-mvho4b7i'
2022-02-07T20:08:48,223   Created temporary directory: /tmp/pip-build-env-qjmwhret
2022-02-07T20:08:48,238   Created temporary directory: /tmp/pip-standalone-pip-rc2tyajh
2022-02-07T20:08:49,979   Installing build dependencies: started
2022-02-07T20:08:49,980   Running command /usr/bin/python3 /tmp/pip-standalone-pip-rc2tyajh/__env_pip__.zip/pip install --ignore-installed --no-user --prefix /tmp/pip-build-env-qjmwhret/overlay --no-warn-script-location -v --no-binary radtext --only-binary :none: -i https://pypi.org/simple --extra-index-url https://www.piwheels.org/simple --prefer-binary -- 'setuptools>=42' wheel
2022-02-07T20:08:58,009   Using pip 21.3.1 from /tmp/pip-standalone-pip-rc2tyajh/__env_pip__.zip/pip (python 3.7)
2022-02-07T20:08:58,819   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-02-07T20:09:03,756   Collecting setuptools>=42
2022-02-07T20:09:04,004     Using cached https://www.piwheels.org/simple/setuptools/setuptools-60.8.1-py3-none-any.whl (1.1 MB)
2022-02-07T20:09:04,770   Collecting wheel
2022-02-07T20:09:04,804     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-02-07T20:09:08,995   Installing collected packages: wheel, setuptools
2022-02-07T20:09:09,260     Creating /tmp/pip-build-env-qjmwhret/overlay/bin
2022-02-07T20:09:09,263     changing mode of /tmp/pip-build-env-qjmwhret/overlay/bin/wheel to 755
2022-02-07T20:09:13,001   Successfully installed setuptools-60.8.1 wheel-0.37.1
2022-02-07T20:09:13,170   WARNING: You are using pip version 21.3.1; however, version 22.0.2 is available.
2022-02-07T20:09:13,170   You should consider upgrading via the '/usr/bin/python3 -m pip install --upgrade pip' command.
2022-02-07T20:09:13,571   Installing build dependencies: finished with status 'done'
2022-02-07T20:09:13,592   Getting requirements to build wheel: started
2022-02-07T20:09:13,593   Running command /usr/bin/python3 /usr/local/lib/python3.7/dist-packages/pip/_vendor/pep517/in_process/_in_process.py get_requires_for_build_wheel /tmp/tmpcvam6v47
2022-02-07T20:09:15,570   running egg_info
2022-02-07T20:09:15,665   writing manifest file 'radtext.egg-info/SOURCES.txt'
2022-02-07T20:09:15,794   Getting requirements to build wheel: finished with status 'done'
2022-02-07T20:09:15,812   Created temporary directory: /tmp/pip-modern-metadata-hrzn_d_9
2022-02-07T20:09:15,818   Preparing metadata (pyproject.toml): started
2022-02-07T20:09:15,818   Running command /usr/bin/python3 /usr/local/lib/python3.7/dist-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /tmp/tmp80sea_0x
2022-02-07T20:09:17,604   running dist_info
2022-02-07T20:09:17,634   creating /tmp/pip-modern-metadata-hrzn_d_9/radtext.egg-info
2022-02-07T20:09:17,651   writing manifest file '/tmp/pip-modern-metadata-hrzn_d_9/radtext.egg-info/SOURCES.txt'
2022-02-07T20:09:17,706   writing manifest file '/tmp/pip-modern-metadata-hrzn_d_9/radtext.egg-info/SOURCES.txt'
2022-02-07T20:09:18,023   Preparing metadata (pyproject.toml): finished with status 'done'
2022-02-07T20:09:18,036   Source in /tmp/pip-wheel-w4tu8_pv/radtext_c0dd67e29c384b95ae90fb24e8f6f5ed has version 1.0.dev1, which satisfies requirement radtext==1.0.dev1 from https://files.pythonhosted.org/packages/42/99/926b54f940483c1a582c4b46a73eca9a154bc2a033a3eece3970d5a9ff55/radtext-1.0.dev1.tar.gz#sha256=d0062f808d7d38e2c1a827de5ad1ffde14d1c11ab5d40a477523fedc083f34bb
2022-02-07T20:09:18,038   Removed radtext==1.0.dev1 from https://files.pythonhosted.org/packages/42/99/926b54f940483c1a582c4b46a73eca9a154bc2a033a3eece3970d5a9ff55/radtext-1.0.dev1.tar.gz#sha256=d0062f808d7d38e2c1a827de5ad1ffde14d1c11ab5d40a477523fedc083f34bb from build tracker '/tmp/pip-req-tracker-mvho4b7i'
2022-02-07T20:09:18,052 Created temporary directory: /tmp/pip-unpack-u_n5kuz1
2022-02-07T20:09:18,054 Building wheels for collected packages: radtext
2022-02-07T20:09:18,062   Created temporary directory: /tmp/pip-wheel-kuzq6k63
2022-02-07T20:09:18,063   Destination directory: /tmp/pip-wheel-kuzq6k63
2022-02-07T20:09:18,068   Building wheel for radtext (pyproject.toml): started
2022-02-07T20:09:18,068   Running command /usr/bin/python3 /usr/local/lib/python3.7/dist-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmphjsfk8eb
2022-02-07T20:09:19,934   running bdist_wheel
2022-02-07T20:09:20,355   running build
2022-02-07T20:09:20,355   running build_py
2022-02-07T20:09:20,365   creating build
2022-02-07T20:09:20,365   creating build/lib
2022-02-07T20:09:20,367   creating build/lib/radtext
2022-02-07T20:09:20,369   copying radtext/ner_spacy.py -> build/lib/radtext
2022-02-07T20:09:20,373   copying radtext/section_split_regex.py -> build/lib/radtext
2022-02-07T20:09:20,376   copying radtext/pipeline.py -> build/lib/radtext
2022-02-07T20:09:20,380   copying radtext/collect_neg_labels.py -> build/lib/radtext
2022-02-07T20:09:20,384   copying radtext/sentence_split_nltk.py -> build/lib/radtext
2022-02-07T20:09:20,387   copying radtext/parse_bllip.py -> build/lib/radtext
2022-02-07T20:09:20,390   copying radtext/csv2bioc.py -> build/lib/radtext
2022-02-07T20:09:20,393   copying radtext/ner_regex.py -> build/lib/radtext
2022-02-07T20:09:20,396   copying radtext/preprocess_spacy.py -> build/lib/radtext
2022-02-07T20:09:20,399   copying radtext/__init__.py -> build/lib/radtext
2022-02-07T20:09:20,402   copying radtext/deid.py -> build/lib/radtext
2022-02-07T20:09:20,405   copying radtext/section_split_medspacy.py -> build/lib/radtext
2022-02-07T20:09:20,408   copying radtext/utils.py -> build/lib/radtext
2022-02-07T20:09:20,411   copying radtext/preprocess_stanza.py -> build/lib/radtext
2022-02-07T20:09:20,414   copying radtext/convert_ptb_to_ud.py -> build/lib/radtext
2022-02-07T20:09:20,418   copying radtext/core.py -> build/lib/radtext
2022-02-07T20:09:20,421   copying radtext/bioc_cdm_converter.py -> build/lib/radtext
2022-02-07T20:09:20,425   creating build/lib/radtext/pphilter
2022-02-07T20:09:20,427   copying radtext/pphilter/philter.py -> build/lib/radtext/pphilter
2022-02-07T20:09:20,432   copying radtext/pphilter/coordinate_map.py -> build/lib/radtext/pphilter
2022-02-07T20:09:20,436   copying radtext/pphilter/__init__.py -> build/lib/radtext/pphilter
2022-02-07T20:09:20,441   creating build/lib/radtext/neg
2022-02-07T20:09:20,442   copying radtext/neg/semgraph.py -> build/lib/radtext/neg
2022-02-07T20:09:20,446   copying radtext/neg/match_regex.py -> build/lib/radtext/neg
2022-02-07T20:09:20,449   copying radtext/neg/neg_pipeline.py -> build/lib/radtext/neg
2022-02-07T20:09:20,452   copying radtext/neg/neg_cleanup.py -> build/lib/radtext/neg
2022-02-07T20:09:20,455   copying radtext/neg/constants.py -> build/lib/radtext/neg
2022-02-07T20:09:20,459   copying radtext/neg/__init__.py -> build/lib/radtext/neg
2022-02-07T20:09:20,461   copying radtext/neg/match_ngrex.py -> build/lib/radtext/neg
2022-02-07T20:09:20,467   creating build/lib/radtext/cmd
2022-02-07T20:09:20,468   copying radtext/cmd/preprocess_pipeline.py -> build/lib/radtext/cmd
2022-02-07T20:09:20,471   copying radtext/cmd/collect_neg_labels.py -> build/lib/radtext/cmd
2022-02-07T20:09:20,475   copying radtext/cmd/ner.py -> build/lib/radtext/cmd
2022-02-07T20:09:20,478   copying radtext/cmd/cmd_utils.py -> build/lib/radtext/cmd
2022-02-07T20:09:20,481   copying radtext/cmd/csv2bioc.py -> build/lib/radtext/cmd
2022-02-07T20:09:20,484   copying radtext/cmd/ssplit.py -> build/lib/radtext/cmd
2022-02-07T20:09:20,487   copying radtext/cmd/parse.py -> build/lib/radtext/cmd
2022-02-07T20:09:20,490   copying radtext/cmd/neg.py -> build/lib/radtext/cmd
2022-02-07T20:09:20,493   copying radtext/cmd/download_models.py -> build/lib/radtext/cmd
2022-02-07T20:09:20,496   copying radtext/cmd/cdm2bioc.py -> build/lib/radtext/cmd
2022-02-07T20:09:20,499   copying radtext/cmd/ptb2ud.py -> build/lib/radtext/cmd
2022-02-07T20:09:20,502   copying radtext/cmd/bioc2cdm.py -> build/lib/radtext/cmd
2022-02-07T20:09:20,505   copying radtext/cmd/__init__.py -> build/lib/radtext/cmd
2022-02-07T20:09:20,507   copying radtext/cmd/deid.py -> build/lib/radtext/cmd
2022-02-07T20:09:20,511   copying radtext/cmd/split_section.py -> build/lib/radtext/cmd
2022-02-07T20:09:20,515   creating build/lib/radtext/neg/ngrex
2022-02-07T20:09:20,516   copying radtext/neg/ngrex/parsetab.py -> build/lib/radtext/neg/ngrex
2022-02-07T20:09:20,520   copying radtext/neg/ngrex/pattern.py -> build/lib/radtext/neg/ngrex
2022-02-07T20:09:20,524   copying radtext/neg/ngrex/parser.py -> build/lib/radtext/neg/ngrex
2022-02-07T20:09:20,528   copying radtext/neg/ngrex/__init__.py -> build/lib/radtext/neg/ngrex
2022-02-07T20:09:20,548   creating build/lib/radtext/resources
2022-02-07T20:09:20,549   copying radtext/resources/bioc2cdm_map.json -> build/lib/radtext/resources
2022-02-07T20:09:20,554   copying radtext/resources/section_titles.txt -> build/lib/radtext/resources
2022-02-07T20:09:20,559   copying radtext/resources/cxr14_phrases_v2.yml -> build/lib/radtext/resources
2022-02-07T20:09:20,563   copying radtext/resources/chexpert_phrases.yml -> build/lib/radtext/resources
2022-02-07T20:09:20,567   creating build/lib/radtext/resources/patterns
2022-02-07T20:09:20,568   copying radtext/resources/patterns/regex_negation.yml -> build/lib/radtext/resources/patterns
2022-02-07T20:09:20,573   copying radtext/resources/patterns/ngrex_uncertainty_post_negation.yml -> build/lib/radtext/resources/patterns
2022-02-07T20:09:20,578   copying radtext/resources/patterns/regex_uncertainty_post_negation.yml -> build/lib/radtext/resources/patterns
2022-02-07T20:09:20,582   copying radtext/resources/patterns/ngrex_negation.yml -> build/lib/radtext/resources/patterns
2022-02-07T20:09:20,587   copying radtext/resources/patterns/regex_double_negation.yml -> build/lib/radtext/resources/patterns
2022-02-07T20:09:20,591   copying radtext/resources/patterns/regex_uncertainty_pre_negation.yml -> build/lib/radtext/resources/patterns
2022-02-07T20:09:20,594   copying radtext/resources/patterns/ngrex_uncertainty_pre_negation.yml -> build/lib/radtext/resources/patterns
2022-02-07T20:09:20,598   copying radtext/resources/patterns/ngrex_double_negation.yml -> build/lib/radtext/resources/patterns
2022-02-07T20:09:20,603   copying radtext/pphilter/philter_delta.json -> build/lib/radtext/pphilter
2022-02-07T20:09:20,613   creating build/lib/radtext/pphilter/filters
2022-02-07T20:09:20,613   creating build/lib/radtext/pphilter/filters/whitelists
2022-02-07T20:09:20,615   copying radtext/pphilter/filters/whitelists/whitelist_plus_fps_091718_nonames.json -> build/lib/radtext/pphilter/filters/whitelists
2022-02-07T20:09:20,874   creating build/lib/radtext/pphilter/filters/regex
2022-02-07T20:09:20,875   copying radtext/pphilter/filters/regex/transform_regex.py -> build/lib/radtext/pphilter/filters/regex
2022-02-07T20:09:20,880   creating build/lib/radtext/pphilter/filters/regex_context
2022-02-07T20:09:20,881   copying radtext/pphilter/filters/regex_context/names_regex_context1.txt -> build/lib/radtext/pphilter/filters/regex_context
2022-02-07T20:09:20,885   copying radtext/pphilter/filters/regex_context/initials.txt -> build/lib/radtext/pphilter/filters/regex_context
2022-02-07T20:09:20,889   copying radtext/pphilter/filters/regex_context/names_regex_context2.txt -> build/lib/radtext/pphilter/filters/regex_context
2022-02-07T20:09:20,893   copying radtext/pphilter/filters/regex_context/names_regex_context4.txt -> build/lib/radtext/pphilter/filters/regex_context
2022-02-07T20:09:20,897   copying radtext/pphilter/filters/regex_context/names_regex_context3.txt -> build/lib/radtext/pphilter/filters/regex_context
2022-02-07T20:09:20,901   creating build/lib/radtext/pphilter/filters/blacklists
2022-02-07T20:09:20,902   copying radtext/pphilter/filters/blacklists/lastnames_minus_fps.json -> build/lib/radtext/pphilter/filters/blacklists
2022-02-07T20:09:21,024   copying radtext/pphilter/filters/blacklists/firstnames_minus_fps.json -> build/lib/radtext/pphilter/filters/blacklists
2022-02-07T20:09:21,114   running install
2022-02-07T20:09:21,177   running install_lib
2022-02-07T20:09:21,184   creating build/bdist.linux-armv7l
2022-02-07T20:09:21,185   creating build/bdist.linux-armv7l/wheel
2022-02-07T20:09:21,190   creating build/bdist.linux-armv7l/wheel/radtext
2022-02-07T20:09:21,208   creating build/bdist.linux-armv7l/wheel/radtext/pphilter
2022-02-07T20:09:21,224   creating build/bdist.linux-armv7l/wheel/radtext/pphilter/filters
2022-02-07T20:09:21,226   creating build/bdist.linux-armv7l/wheel/radtext/pphilter/filters/whitelists
2022-02-07T20:09:21,421   creating build/bdist.linux-armv7l/wheel/radtext/pphilter/filters/regex
2022-02-07T20:09:21,429   creating build/bdist.linux-armv7l/wheel/radtext/pphilter/filters/regex_context
2022-02-07T20:09:21,449   creating build/bdist.linux-armv7l/wheel/radtext/pphilter/filters/blacklists
2022-02-07T20:09:21,721   creating build/bdist.linux-armv7l/wheel/radtext/neg
2022-02-07T20:09:21,724   creating build/bdist.linux-armv7l/wheel/radtext/neg/ngrex
2022-02-07T20:09:21,769   creating build/bdist.linux-armv7l/wheel/radtext/resources
2022-02-07T20:09:21,772   creating build/bdist.linux-armv7l/wheel/radtext/resources/patterns
2022-02-07T20:09:21,821   creating build/bdist.linux-armv7l/wheel/radtext/cmd
2022-02-07T20:09:21,896   running install_egg_info
2022-02-07T20:09:21,938   running egg_info
2022-02-07T20:09:22,002   writing manifest file 'radtext.egg-info/SOURCES.txt'
2022-02-07T20:09:22,006   Copying radtext.egg-info to build/bdist.linux-armv7l/wheel/radtext-1.0.dev1-py3.7.egg-info
2022-02-07T20:09:22,029   running install_scripts
2022-02-07T20:09:25,517   Building wheel for radtext (pyproject.toml): finished with status 'done'
2022-02-07T20:09:25,662   Created wheel for radtext: filename=radtext-1.0.dev1-py3-none-any.whl size=2342531 sha256=44515f8aff666667c0e6ea37f4ab6925f69e17c6b4d001bc735c8f0379a3ef21
2022-02-07T20:09:25,662   Stored in directory: /tmp/pip-ephem-wheel-cache-v3mysd9k/wheels/a9/73/71/ba426b6b7a8d706169f0b8fb004df72b4280db40962592ad65
2022-02-07T20:09:25,693 Successfully built radtext
2022-02-07T20:09:25,905 Removed build tracker: '/tmp/pip-req-tracker-mvho4b7i'