2022-02-07T20:13:37,521 Created temporary directory: /tmp/pip-ephem-wheel-cache-9vunb6s5
2022-02-07T20:13:37,528 Created temporary directory: /tmp/pip-req-tracker-foevjdxv
2022-02-07T20:13:37,528 Initialized build tracking at /tmp/pip-req-tracker-foevjdxv
2022-02-07T20:13:37,529 Created build tracker: /tmp/pip-req-tracker-foevjdxv
2022-02-07T20:13:37,529 Entered build tracker: /tmp/pip-req-tracker-foevjdxv
2022-02-07T20:13:37,530 Created temporary directory: /tmp/pip-wheel-7rbfj4aw
2022-02-07T20:13:37,604 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-02-07T20:13:37,610 2 location(s) to search for versions of radtext:
2022-02-07T20:13:37,610 * https://pypi.org/simple/radtext/
2022-02-07T20:13:37,610 * https://www.piwheels.org/simple/radtext/
2022-02-07T20:13:37,611 Fetching project page and analyzing links: https://pypi.org/simple/radtext/
2022-02-07T20:13:37,612 Getting page https://pypi.org/simple/radtext/
2022-02-07T20:13:37,616 Found index url https://pypi.org/simple
2022-02-07T20:13:37,817   Skipping link: No binaries permitted for radtext: https://files.pythonhosted.org/packages/bd/c5/c3c61f0eb888f928af23265f4465e7097467f5d9792c62982f7e893577f6/radtext-1.0.dev1-py3-none-any.whl#sha256=0f67e17f931149f16cef5d15a3c4aad20788e8917fb8f930bf24914ab638c285 (from https://pypi.org/simple/radtext/) (requires-python:>=3.6)
2022-02-07T20:13:37,818   Found link https://files.pythonhosted.org/packages/42/99/926b54f940483c1a582c4b46a73eca9a154bc2a033a3eece3970d5a9ff55/radtext-1.0.dev1.tar.gz#sha256=d0062f808d7d38e2c1a827de5ad1ffde14d1c11ab5d40a477523fedc083f34bb (from https://pypi.org/simple/radtext/) (requires-python:>=3.6), version: 1.0.dev1
2022-02-07T20:13:37,819   Skipping link: No binaries permitted for radtext: https://files.pythonhosted.org/packages/f3/bf/9f93de807e40fde7a9203da84741243e6d06b39a9a3bb0b7a4bbbaad09d0/radtext-1.0.dev2-py3-none-any.whl#sha256=b25fdeab34f451adc73693cee97afee416f5900ca53f238800fa9d9ba44ff2be (from https://pypi.org/simple/radtext/) (requires-python:>=3.6)
2022-02-07T20:13:37,821   Found link https://files.pythonhosted.org/packages/1f/04/ebebc2522027b1b6f3e0576ec8b669885fbed8e2598018b8dc641a696f43/radtext-1.0.dev2.tar.gz#sha256=d062ad13f02e54bed472530d936802dbc55fd867c300d0dd66ed02604c81b806 (from https://pypi.org/simple/radtext/) (requires-python:>=3.6), version: 1.0.dev2
2022-02-07T20:13:37,822 Fetching project page and analyzing links: https://www.piwheels.org/simple/radtext/
2022-02-07T20:13:37,822 Getting page https://www.piwheels.org/simple/radtext/
2022-02-07T20:13:37,824 Found index url https://www.piwheels.org/simple
2022-02-07T20:13:38,043   Skipping link: No binaries permitted for radtext: https://www.piwheels.org/simple/radtext/radtext-1.0.dev1-py3-none-any.whl#sha256=44515f8aff666667c0e6ea37f4ab6925f69e17c6b4d001bc735c8f0379a3ef21 (from https://www.piwheels.org/simple/radtext/) (requires-python:>=3.6)
2022-02-07T20:13:38,044 Skipping link: not a file: https://www.piwheels.org/simple/radtext/
2022-02-07T20:13:38,044 Skipping link: not a file: https://pypi.org/simple/radtext/
2022-02-07T20:13:38,079 Given no hashes to check 1 links for project 'radtext': discarding no candidates
2022-02-07T20:13:38,110 Collecting radtext==1.0.dev2
2022-02-07T20:13:38,113   Created temporary directory: /tmp/pip-unpack-qhwb59zb
2022-02-07T20:13:38,956   Downloading radtext-1.0.dev2.tar.gz (2.3 MB)
2022-02-07T20:13:40,627   Added radtext==1.0.dev2 from https://files.pythonhosted.org/packages/1f/04/ebebc2522027b1b6f3e0576ec8b669885fbed8e2598018b8dc641a696f43/radtext-1.0.dev2.tar.gz#sha256=d062ad13f02e54bed472530d936802dbc55fd867c300d0dd66ed02604c81b806 to build tracker '/tmp/pip-req-tracker-foevjdxv'
2022-02-07T20:13:40,636   Created temporary directory: /tmp/pip-build-env-gbh2dkaa
2022-02-07T20:13:40,650   Created temporary directory: /tmp/pip-standalone-pip-j2kl2h_v
2022-02-07T20:13:42,451   Installing build dependencies: started
2022-02-07T20:13:42,452   Running command /usr/bin/python3 /tmp/pip-standalone-pip-j2kl2h_v/__env_pip__.zip/pip install --ignore-installed --no-user --prefix /tmp/pip-build-env-gbh2dkaa/overlay --no-warn-script-location -v --no-binary radtext --only-binary :none: -i https://pypi.org/simple --extra-index-url https://www.piwheels.org/simple --prefer-binary -- 'setuptools>=42' wheel
2022-02-07T20:13:50,500   Using pip 21.3.1 from /tmp/pip-standalone-pip-j2kl2h_v/__env_pip__.zip/pip (python 3.7)
2022-02-07T20:13:51,313   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-02-07T20:13:56,323   Collecting setuptools>=42
2022-02-07T20:13:56,564     Using cached https://www.piwheels.org/simple/setuptools/setuptools-60.8.1-py3-none-any.whl (1.1 MB)
2022-02-07T20:13:57,322   Collecting wheel
2022-02-07T20:13:57,357     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-02-07T20:14:01,140   Installing collected packages: wheel, setuptools
2022-02-07T20:14:01,409     Creating /tmp/pip-build-env-gbh2dkaa/overlay/bin
2022-02-07T20:14:01,412     changing mode of /tmp/pip-build-env-gbh2dkaa/overlay/bin/wheel to 755
2022-02-07T20:14:05,152   Successfully installed setuptools-60.8.1 wheel-0.37.1
2022-02-07T20:14:05,312   WARNING: You are using pip version 21.3.1; however, version 22.0.2 is available.
2022-02-07T20:14:05,313   You should consider upgrading via the '/usr/bin/python3 -m pip install --upgrade pip' command.
2022-02-07T20:14:05,708   Installing build dependencies: finished with status 'done'
2022-02-07T20:14:05,729   Getting requirements to build wheel: started
2022-02-07T20:14:05,730   Running command /usr/bin/python3 /usr/local/lib/python3.7/dist-packages/pip/_vendor/pep517/in_process/_in_process.py get_requires_for_build_wheel /tmp/tmpr11znt9v
2022-02-07T20:14:07,690   running egg_info
2022-02-07T20:14:07,781   writing manifest file 'radtext.egg-info/SOURCES.txt'
2022-02-07T20:14:07,910   Getting requirements to build wheel: finished with status 'done'
2022-02-07T20:14:07,928   Created temporary directory: /tmp/pip-modern-metadata-w8iye631
2022-02-07T20:14:07,934   Preparing metadata (pyproject.toml): started
2022-02-07T20:14:07,935   Running command /usr/bin/python3 /usr/local/lib/python3.7/dist-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /tmp/tmpfnt56bcl
2022-02-07T20:14:09,752   running dist_info
2022-02-07T20:14:09,782   creating /tmp/pip-modern-metadata-w8iye631/radtext.egg-info
2022-02-07T20:14:09,798   writing manifest file '/tmp/pip-modern-metadata-w8iye631/radtext.egg-info/SOURCES.txt'
2022-02-07T20:14:09,854   writing manifest file '/tmp/pip-modern-metadata-w8iye631/radtext.egg-info/SOURCES.txt'
2022-02-07T20:14:10,167   Preparing metadata (pyproject.toml): finished with status 'done'
2022-02-07T20:14:10,180   Source in /tmp/pip-wheel-7rbfj4aw/radtext_aa7dbc6d9f624509ad95a00ecc2ca886 has version 1.0.dev2, which satisfies requirement radtext==1.0.dev2 from https://files.pythonhosted.org/packages/1f/04/ebebc2522027b1b6f3e0576ec8b669885fbed8e2598018b8dc641a696f43/radtext-1.0.dev2.tar.gz#sha256=d062ad13f02e54bed472530d936802dbc55fd867c300d0dd66ed02604c81b806
2022-02-07T20:14:10,182   Removed radtext==1.0.dev2 from https://files.pythonhosted.org/packages/1f/04/ebebc2522027b1b6f3e0576ec8b669885fbed8e2598018b8dc641a696f43/radtext-1.0.dev2.tar.gz#sha256=d062ad13f02e54bed472530d936802dbc55fd867c300d0dd66ed02604c81b806 from build tracker '/tmp/pip-req-tracker-foevjdxv'
2022-02-07T20:14:10,197 Created temporary directory: /tmp/pip-unpack-hu7jmbrx
2022-02-07T20:14:10,198 Building wheels for collected packages: radtext
2022-02-07T20:14:10,206   Created temporary directory: /tmp/pip-wheel-d5nzy3ba
2022-02-07T20:14:10,207   Destination directory: /tmp/pip-wheel-d5nzy3ba
2022-02-07T20:14:10,212   Building wheel for radtext (pyproject.toml): started
2022-02-07T20:14:10,212   Running command /usr/bin/python3 /usr/local/lib/python3.7/dist-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmp_wtno59b
2022-02-07T20:14:12,054   running bdist_wheel
2022-02-07T20:14:12,474   running build
2022-02-07T20:14:12,475   running build_py
2022-02-07T20:14:12,484   creating build
2022-02-07T20:14:12,485   creating build/lib
2022-02-07T20:14:12,486   creating build/lib/radtext
2022-02-07T20:14:12,488   copying radtext/deid.py -> build/lib/radtext
2022-02-07T20:14:12,492   copying radtext/__init__.py -> build/lib/radtext
2022-02-07T20:14:12,495   copying radtext/convert_ptb_to_ud.py -> build/lib/radtext
2022-02-07T20:14:12,499   copying radtext/core.py -> build/lib/radtext
2022-02-07T20:14:12,502   copying radtext/section_split_medspacy.py -> build/lib/radtext
2022-02-07T20:14:12,505   copying radtext/parse_bllip.py -> build/lib/radtext
2022-02-07T20:14:12,508   copying radtext/pipeline.py -> build/lib/radtext
2022-02-07T20:14:12,513   copying radtext/sentence_split_nltk.py -> build/lib/radtext
2022-02-07T20:14:12,516   copying radtext/section_split_regex.py -> build/lib/radtext
2022-02-07T20:14:12,519   copying radtext/collect_neg_labels.py -> build/lib/radtext
2022-02-07T20:14:12,523   copying radtext/preprocess_spacy.py -> build/lib/radtext
2022-02-07T20:14:12,526   copying radtext/preprocess_stanza.py -> build/lib/radtext
2022-02-07T20:14:12,529   copying radtext/bioc_cdm_converter.py -> build/lib/radtext
2022-02-07T20:14:12,532   copying radtext/ner_regex.py -> build/lib/radtext
2022-02-07T20:14:12,536   copying radtext/utils.py -> build/lib/radtext
2022-02-07T20:14:12,539   copying radtext/ner_spacy.py -> build/lib/radtext
2022-02-07T20:14:12,543   copying radtext/csv2bioc.py -> build/lib/radtext
2022-02-07T20:14:12,547   creating build/lib/radtext/pphilter
2022-02-07T20:14:12,549   copying radtext/pphilter/philter.py -> build/lib/radtext/pphilter
2022-02-07T20:14:12,554   copying radtext/pphilter/__init__.py -> build/lib/radtext/pphilter
2022-02-07T20:14:12,557   copying radtext/pphilter/coordinate_map.py -> build/lib/radtext/pphilter
2022-02-07T20:14:12,563   creating build/lib/radtext/cmd
2022-02-07T20:14:12,565   copying radtext/cmd/neg.py -> build/lib/radtext/cmd
2022-02-07T20:14:12,568   copying radtext/cmd/deid.py -> build/lib/radtext/cmd
2022-02-07T20:14:12,571   copying radtext/cmd/__init__.py -> build/lib/radtext/cmd
2022-02-07T20:14:12,573   copying radtext/cmd/ner.py -> build/lib/radtext/cmd
2022-02-07T20:14:12,576   copying radtext/cmd/parse.py -> build/lib/radtext/cmd
2022-02-07T20:14:12,579   copying radtext/cmd/bioc2cdm.py -> build/lib/radtext/cmd
2022-02-07T20:14:12,582   copying radtext/cmd/download_models.py -> build/lib/radtext/cmd
2022-02-07T20:14:12,585   copying radtext/cmd/collect_neg_labels.py -> build/lib/radtext/cmd
2022-02-07T20:14:12,589   copying radtext/cmd/cmd_utils.py -> build/lib/radtext/cmd
2022-02-07T20:14:12,592   copying radtext/cmd/ssplit.py -> build/lib/radtext/cmd
2022-02-07T20:14:12,595   copying radtext/cmd/csv2bioc.py -> build/lib/radtext/cmd
2022-02-07T20:14:12,598   copying radtext/cmd/split_section.py -> build/lib/radtext/cmd
2022-02-07T20:14:12,601   copying radtext/cmd/preprocess_pipeline.py -> build/lib/radtext/cmd
2022-02-07T20:14:12,604   copying radtext/cmd/cdm2bioc.py -> build/lib/radtext/cmd
2022-02-07T20:14:12,607   copying radtext/cmd/ptb2ud.py -> build/lib/radtext/cmd
2022-02-07T20:14:12,612   creating build/lib/radtext/neg
2022-02-07T20:14:12,613   copying radtext/neg/neg_cleanup.py -> build/lib/radtext/neg
2022-02-07T20:14:12,616   copying radtext/neg/match_regex.py -> build/lib/radtext/neg
2022-02-07T20:14:12,619   copying radtext/neg/__init__.py -> build/lib/radtext/neg
2022-02-07T20:14:12,622   copying radtext/neg/semgraph.py -> build/lib/radtext/neg
2022-02-07T20:14:12,625   copying radtext/neg/match_ngrex.py -> build/lib/radtext/neg
2022-02-07T20:14:12,628   copying radtext/neg/constants.py -> build/lib/radtext/neg
2022-02-07T20:14:12,631   copying radtext/neg/neg_pipeline.py -> build/lib/radtext/neg
2022-02-07T20:14:12,636   creating build/lib/radtext/neg/ngrex
2022-02-07T20:14:12,637   copying radtext/neg/ngrex/__init__.py -> build/lib/radtext/neg/ngrex
2022-02-07T20:14:12,640   copying radtext/neg/ngrex/parsetab.py -> build/lib/radtext/neg/ngrex
2022-02-07T20:14:12,644   copying radtext/neg/ngrex/pattern.py -> build/lib/radtext/neg/ngrex
2022-02-07T20:14:12,648   copying radtext/neg/ngrex/parser.py -> build/lib/radtext/neg/ngrex
2022-02-07T20:14:12,668   creating build/lib/radtext/resources
2022-02-07T20:14:12,669   copying radtext/resources/bioc2cdm_map.json -> build/lib/radtext/resources
2022-02-07T20:14:12,673   copying radtext/resources/cxr14_phrases_v2.yml -> build/lib/radtext/resources
2022-02-07T20:14:12,677   copying radtext/resources/section_titles.txt -> build/lib/radtext/resources
2022-02-07T20:14:12,682   copying radtext/resources/chexpert_phrases.yml -> build/lib/radtext/resources
2022-02-07T20:14:12,686   creating build/lib/radtext/resources/patterns
2022-02-07T20:14:12,688   copying radtext/resources/patterns/ngrex_uncertainty_post_negation.yml -> build/lib/radtext/resources/patterns
2022-02-07T20:14:12,693   copying radtext/resources/patterns/ngrex_negation.yml -> build/lib/radtext/resources/patterns
2022-02-07T20:14:12,699   copying radtext/resources/patterns/regex_uncertainty_post_negation.yml -> build/lib/radtext/resources/patterns
2022-02-07T20:14:12,703   copying radtext/resources/patterns/regex_double_negation.yml -> build/lib/radtext/resources/patterns
2022-02-07T20:14:12,708   copying radtext/resources/patterns/regex_negation.yml -> build/lib/radtext/resources/patterns
2022-02-07T20:14:12,712   copying radtext/resources/patterns/ngrex_double_negation.yml -> build/lib/radtext/resources/patterns
2022-02-07T20:14:12,716   copying radtext/resources/patterns/regex_uncertainty_pre_negation.yml -> build/lib/radtext/resources/patterns
2022-02-07T20:14:12,720   copying radtext/resources/patterns/ngrex_uncertainty_pre_negation.yml -> build/lib/radtext/resources/patterns
2022-02-07T20:14:12,727   copying radtext/pphilter/philter_delta.json -> build/lib/radtext/pphilter
2022-02-07T20:14:12,735   creating build/lib/radtext/pphilter/filters
2022-02-07T20:14:12,737   creating build/lib/radtext/pphilter/filters/whitelists
2022-02-07T20:14:12,739   copying radtext/pphilter/filters/whitelists/whitelist_plus_fps_091718_nonames.json -> build/lib/radtext/pphilter/filters/whitelists
2022-02-07T20:14:12,919   creating build/lib/radtext/pphilter/filters/regex_context
2022-02-07T20:14:12,922   copying radtext/pphilter/filters/regex_context/names_regex_context3.txt -> build/lib/radtext/pphilter/filters/regex_context
2022-02-07T20:14:12,926   copying radtext/pphilter/filters/regex_context/initials.txt -> build/lib/radtext/pphilter/filters/regex_context
2022-02-07T20:14:12,931   copying radtext/pphilter/filters/regex_context/names_regex_context4.txt -> build/lib/radtext/pphilter/filters/regex_context
2022-02-07T20:14:12,935   copying radtext/pphilter/filters/regex_context/names_regex_context1.txt -> build/lib/radtext/pphilter/filters/regex_context
2022-02-07T20:14:12,940   copying radtext/pphilter/filters/regex_context/names_regex_context2.txt -> build/lib/radtext/pphilter/filters/regex_context
2022-02-07T20:14:12,944   creating build/lib/radtext/pphilter/filters/regex
2022-02-07T20:14:12,946   copying radtext/pphilter/filters/regex/transform_regex.py -> build/lib/radtext/pphilter/filters/regex
2022-02-07T20:14:12,951   creating build/lib/radtext/pphilter/filters/blacklists
2022-02-07T20:14:12,954   copying radtext/pphilter/filters/blacklists/firstnames_minus_fps.json -> build/lib/radtext/pphilter/filters/blacklists
2022-02-07T20:14:13,023   copying radtext/pphilter/filters/blacklists/lastnames_minus_fps.json -> build/lib/radtext/pphilter/filters/blacklists
2022-02-07T20:14:13,169   running install
2022-02-07T20:14:13,233   running install_lib
2022-02-07T20:14:13,240   creating build/bdist.linux-armv7l
2022-02-07T20:14:13,241   creating build/bdist.linux-armv7l/wheel
2022-02-07T20:14:13,244   creating build/bdist.linux-armv7l/wheel/radtext
2022-02-07T20:14:13,251   creating build/bdist.linux-armv7l/wheel/radtext/resources
2022-02-07T20:14:13,270   creating build/bdist.linux-armv7l/wheel/radtext/resources/patterns
2022-02-07T20:14:13,322   creating build/bdist.linux-armv7l/wheel/radtext/pphilter
2022-02-07T20:14:13,346   creating build/bdist.linux-armv7l/wheel/radtext/pphilter/filters
2022-02-07T20:14:13,349   creating build/bdist.linux-armv7l/wheel/radtext/pphilter/filters/whitelists
2022-02-07T20:14:13,519   creating build/bdist.linux-armv7l/wheel/radtext/pphilter/filters/regex_context
2022-02-07T20:14:13,537   creating build/bdist.linux-armv7l/wheel/radtext/pphilter/filters/regex
2022-02-07T20:14:13,543   creating build/bdist.linux-armv7l/wheel/radtext/pphilter/filters/blacklists
2022-02-07T20:14:13,773   creating build/bdist.linux-armv7l/wheel/radtext/cmd
2022-02-07T20:14:13,824   creating build/bdist.linux-armv7l/wheel/radtext/neg
2022-02-07T20:14:13,839   creating build/bdist.linux-armv7l/wheel/radtext/neg/ngrex
2022-02-07T20:14:13,863   running install_egg_info
2022-02-07T20:14:13,905   running egg_info
2022-02-07T20:14:13,970   writing manifest file 'radtext.egg-info/SOURCES.txt'
2022-02-07T20:14:13,973   Copying radtext.egg-info to build/bdist.linux-armv7l/wheel/radtext-1.0.dev2-py3.7.egg-info
2022-02-07T20:14:13,996   running install_scripts
2022-02-07T20:14:17,472   Building wheel for radtext (pyproject.toml): finished with status 'done'
2022-02-07T20:14:17,617   Created wheel for radtext: filename=radtext-1.0.dev2-py3-none-any.whl size=2342521 sha256=1387ae867cb0553ff6e974e82b3b1f12963926d9f546dc1fd8d4f992845cc1f5
2022-02-07T20:14:17,618   Stored in directory: /tmp/pip-ephem-wheel-cache-9vunb6s5/wheels/50/48/5b/f3b13063a73ef79b484816c01693ccd39d35f20b8a810dd115
2022-02-07T20:14:17,649 Successfully built radtext
2022-02-07T20:14:17,808 Removed build tracker: '/tmp/pip-req-tracker-foevjdxv'