2022-02-07T23:34:18,815 Created temporary directory: /tmp/pip-ephem-wheel-cache-54scyo4a
2022-02-07T23:34:18,821 Created temporary directory: /tmp/pip-req-tracker-_i1a9amr
2022-02-07T23:34:18,822 Initialized build tracking at /tmp/pip-req-tracker-_i1a9amr
2022-02-07T23:34:18,823 Created build tracker: /tmp/pip-req-tracker-_i1a9amr
2022-02-07T23:34:18,823 Entered build tracker: /tmp/pip-req-tracker-_i1a9amr
2022-02-07T23:34:18,824 Created temporary directory: /tmp/pip-wheel-11ab1zq7
2022-02-07T23:34:18,898 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-02-07T23:34:18,904 2 location(s) to search for versions of mclumix:
2022-02-07T23:34:18,904 * https://pypi.org/simple/mclumix/
2022-02-07T23:34:18,904 * https://www.piwheels.org/simple/mclumix/
2022-02-07T23:34:18,905 Fetching project page and analyzing links: https://pypi.org/simple/mclumix/
2022-02-07T23:34:18,906 Getting page https://pypi.org/simple/mclumix/
2022-02-07T23:34:18,909 Found index url https://pypi.org/simple
2022-02-07T23:34:19,122   Found link https://files.pythonhosted.org/packages/a0/ed/9f543ae58042cacdcda86ade069e9b34bddbd66614dd0e6c1af2a8aea017/mclumix-0.0.post1.tar.gz#sha256=1c35621ad405c55a6538993ca4fb8c5d10d57fd16286c01be71c4b7cd0443ce5 (from https://pypi.org/simple/mclumix/) (requires-python:>3.6), version: 0.0.post1
2022-02-07T23:34:19,123   Found link https://files.pythonhosted.org/packages/9d/3e/19d4b8e84efd9c7815631dcf977d53c4ae624e5882c6d09800a5a01fe1e0/mclumix-0.0.0.0.5.tar.gz#sha256=2b5473aaaf82ed9097ee1f59c0549848b863260edc38f5269ea2fad6d4288da5 (from https://pypi.org/simple/mclumix/) (requires-python:>3.6), version: 0.0.0.0.5
2022-02-07T23:34:19,125   Found link https://files.pythonhosted.org/packages/22/b8/855d42e9e76d167af8843290aaea8140f13958f88570eb79599c0efac0ae/mclumix-0.0.0.0.6.tar.gz#sha256=237b6357b288919a3e45e2451ee5f96d830cadceb1b13ca771c259de18eac14d (from https://pypi.org/simple/mclumix/) (requires-python:>3.6), version: 0.0.0.0.6
2022-02-07T23:34:19,126   Found link https://files.pythonhosted.org/packages/ee/10/1214ee8bec91a90df0595e6f2d1e0d7205abd43ca45d1d11cc586c635478/mclumix-0.0.0.0.7.tar.gz#sha256=86f74b09309b88bc718b9c63a60b8198a6487b8d92f765272679727d6e0de5c2 (from https://pypi.org/simple/mclumix/) (requires-python:>3.6), version: 0.0.0.0.7
2022-02-07T23:34:19,127   Found link https://files.pythonhosted.org/packages/cf/3d/1d226c3fea26e55a7576020837cd0997ab156171601c72f7b97e2102d543/mclumix-0.0.0.1.tar.gz#sha256=520a575c8ed21f43f34f70e243e04ae9e3231ddee82e3787206376d943b054b0 (from https://pypi.org/simple/mclumix/) (requires-python:>3.6), version: 0.0.0.1
2022-02-07T23:34:19,128   Found link https://files.pythonhosted.org/packages/f0/03/b0027982c8a226e1623cdf32d06a2fc36b754af859b656c92b4672fb8651/mclumix-0.0.1.tar.gz#sha256=25cf56d8b38789b96c60c6c1daa75d9fbda2c7d2e6acac7e75e88d376e94966b (from https://pypi.org/simple/mclumix/) (requires-python:>3.6), version: 0.0.1
2022-02-07T23:34:19,130   Found link https://files.pythonhosted.org/packages/49/a6/5b1322f5a10ff634ba6ffbf0c2d0b1361d7f274b38d9d73ce022e67a565b/mclumix-0.0.2.tar.gz#sha256=9976abd631f7bf9cfd375910a377dc0f9e6a0215456d3a713207aedfe4a2518b (from https://pypi.org/simple/mclumix/) (requires-python:>3.6), version: 0.0.2
2022-02-07T23:34:19,131   Found link https://files.pythonhosted.org/packages/2e/55/46b850c79e0e5e5d084baf516f962e8a6635d4eb985e96a1084bf3c17b1e/mclumix-0.0.3.tar.gz#sha256=4e4446b67ddae69eebf797cfe847695b1099893af5fdd9c8782e8b69910b145c (from https://pypi.org/simple/mclumix/) (requires-python:>3.6), version: 0.0.3
2022-02-07T23:34:19,132   Found link https://files.pythonhosted.org/packages/d1/d9/90cc6a0ba23818baef9aa2a6d09f69fee1d947d5cc0700d86cfa81e27746/mclumix-0.0.4.tar.gz#sha256=587e91c3a7ef194f5111111c207618a8785dc63772cdb7925caae15d61923d5f (from https://pypi.org/simple/mclumix/) (requires-python:>3.6), version: 0.0.4
2022-02-07T23:34:19,133   Found link https://files.pythonhosted.org/packages/a1/e9/c872dc3e46b8b2782ae40f886160b76b22d77d60995f5f9cd614ff928cc3/mclumix-0.0.5.tar.gz#sha256=39d1907ce0a773789789ac8f33b05225daace4fc4ef7d404d2d57bf05025db56 (from https://pypi.org/simple/mclumix/) (requires-python:>3.6), version: 0.0.5
2022-02-07T23:34:19,134   Found link https://files.pythonhosted.org/packages/1d/65/a2af1a523876b836d499640fb2d3665637542aa8b03aa31bb19b24443f46/mclumix-0.0.6.tar.gz#sha256=7ea22bbdf1b7d67f409b6c3b732de21871785e7c6921acb906ce82296ba260a8 (from https://pypi.org/simple/mclumix/) (requires-python:>3.6), version: 0.0.6
2022-02-07T23:34:19,135 Fetching project page and analyzing links: https://www.piwheels.org/simple/mclumix/
2022-02-07T23:34:19,136 Getting page https://www.piwheels.org/simple/mclumix/
2022-02-07T23:34:19,138 Found index url https://www.piwheels.org/simple
2022-02-07T23:34:19,369   Skipping link: No binaries permitted for mclumix: https://www.piwheels.org/simple/mclumix/mclumix-0.0.0.0.5-py3-none-any.whl#sha256=a10c6cdbfae622a9a95a8e5cf928e121ca1316757cfbb8f685e4b7eb8aa92f95 (from https://www.piwheels.org/simple/mclumix/) (requires-python:>3.6)
2022-02-07T23:34:19,369   Skipping link: No binaries permitted for mclumix: https://www.piwheels.org/simple/mclumix/mclumix-0.0.0.0.6-py3-none-any.whl#sha256=f3e72f12b78255065871e2f3f429029d1e120304c42dcfc6f9cb91862c3c3d3f (from https://www.piwheels.org/simple/mclumix/) (requires-python:>3.6)
2022-02-07T23:34:19,370   Skipping link: No binaries permitted for mclumix: https://www.piwheels.org/simple/mclumix/mclumix-0.0.0.1-py3-none-any.whl#sha256=e5792f85954734cfd2b346918742e004233c3f87cef4d48177b7cfe54b648cae (from https://www.piwheels.org/simple/mclumix/) (requires-python:>3.6)
2022-02-07T23:34:19,371   Skipping link: No binaries permitted for mclumix: https://www.piwheels.org/simple/mclumix/mclumix-0.0.1-py3-none-any.whl#sha256=cf1bbdf93eadb6de4777409540c0573cb73a811deef9dc035d23f4ea05980de9 (from https://www.piwheels.org/simple/mclumix/) (requires-python:>3.6)
2022-02-07T23:34:19,371   Skipping link: No binaries permitted for mclumix: https://www.piwheels.org/simple/mclumix/mclumix-0.0.2-py3-none-any.whl#sha256=476597fdf15866acc26e14142987bdfe47e7032af350bb2cd76c01ab69faa92b (from https://www.piwheels.org/simple/mclumix/) (requires-python:>3.6)
2022-02-07T23:34:19,372   Skipping link: No binaries permitted for mclumix: https://www.piwheels.org/simple/mclumix/mclumix-0.0.3-py3-none-any.whl#sha256=1594f88f6dcc449efe54942726a633b6440b1d574e0487a736c1f9235d814099 (from https://www.piwheels.org/simple/mclumix/) (requires-python:>3.6)
2022-02-07T23:34:19,372   Skipping link: No binaries permitted for mclumix: https://www.piwheels.org/simple/mclumix/mclumix-0.0.4-py3-none-any.whl#sha256=7d410c2d61af729ac0459130bafafa544843d86b3821b38481706a13594d16f9 (from https://www.piwheels.org/simple/mclumix/) (requires-python:>3.6)
2022-02-07T23:34:19,373   Skipping link: No binaries permitted for mclumix: https://www.piwheels.org/simple/mclumix/mclumix-0.0.5-py3-none-any.whl#sha256=6f6b93b454c2e7a4d2b94ccc71f56e7b8205e9b3f98b9195250a3ac565243cbf (from https://www.piwheels.org/simple/mclumix/) (requires-python:>3.6)
2022-02-07T23:34:19,373   Skipping link: No binaries permitted for mclumix: https://www.piwheels.org/simple/mclumix/mclumix-0.0.6-py3-none-any.whl#sha256=55cb4106bb858e8e1cb00feddca54f9cd531424cd5d675d3b5167302067ad38a (from https://www.piwheels.org/simple/mclumix/) (requires-python:>3.6)
2022-02-07T23:34:19,374   Skipping link: No binaries permitted for mclumix: https://www.piwheels.org/simple/mclumix/mclumix-0.0.post1-py3-none-any.whl#sha256=4c8955a5d364d5bb04880c6c7987c73f1a90daaeb71ba82e6fa7c0ce4282568e (from https://www.piwheels.org/simple/mclumix/) (requires-python:>3.6)
2022-02-07T23:34:19,374 Skipping link: not a file: https://www.piwheels.org/simple/mclumix/
2022-02-07T23:34:19,375 Skipping link: not a file: https://pypi.org/simple/mclumix/
2022-02-07T23:34:19,413 Given no hashes to check 1 links for project 'mclumix': discarding no candidates
2022-02-07T23:34:19,445 Collecting mclumix==0.0.0.0.7
2022-02-07T23:34:19,448   Created temporary directory: /tmp/pip-unpack-rr3puimq
2022-02-07T23:34:19,713   Downloading mclumix-0.0.0.0.7.tar.gz (59 kB)
2022-02-07T23:34:19,998   Added mclumix==0.0.0.0.7 from https://files.pythonhosted.org/packages/ee/10/1214ee8bec91a90df0595e6f2d1e0d7205abd43ca45d1d11cc586c635478/mclumix-0.0.0.0.7.tar.gz#sha256=86f74b09309b88bc718b9c63a60b8198a6487b8d92f765272679727d6e0de5c2 to build tracker '/tmp/pip-req-tracker-_i1a9amr'
2022-02-07T23:34:20,000   Running setup.py (path:/tmp/pip-wheel-11ab1zq7/mclumix_67b1486588444fa1afa7743fbe3698c4/setup.py) egg_info for package mclumix
2022-02-07T23:34:20,001   Created temporary directory: /tmp/pip-pip-egg-info-5z5escs6
2022-02-07T23:34:20,002   Preparing metadata (setup.py): started
2022-02-07T23:34:20,002   Running command python setup.py egg_info
2022-02-07T23:34:21,600   Warning: 'keywords' should be a list, got type 'tuple'
2022-02-07T23:34:22,012   running egg_info
2022-02-07T23:34:22,018   creating /tmp/pip-pip-egg-info-5z5escs6/mclumix.egg-info
2022-02-07T23:34:22,034   writing manifest file '/tmp/pip-pip-egg-info-5z5escs6/mclumix.egg-info/SOURCES.txt'
2022-02-07T23:34:22,079   writing manifest file '/tmp/pip-pip-egg-info-5z5escs6/mclumix.egg-info/SOURCES.txt'
2022-02-07T23:34:22,206   Preparing metadata (setup.py): finished with status 'done'
2022-02-07T23:34:22,214   Source in /tmp/pip-wheel-11ab1zq7/mclumix_67b1486588444fa1afa7743fbe3698c4 has version 0.0.0.0.7, which satisfies requirement mclumix==0.0.0.0.7 from https://files.pythonhosted.org/packages/ee/10/1214ee8bec91a90df0595e6f2d1e0d7205abd43ca45d1d11cc586c635478/mclumix-0.0.0.0.7.tar.gz#sha256=86f74b09309b88bc718b9c63a60b8198a6487b8d92f765272679727d6e0de5c2
2022-02-07T23:34:22,216   Removed mclumix==0.0.0.0.7 from https://files.pythonhosted.org/packages/ee/10/1214ee8bec91a90df0595e6f2d1e0d7205abd43ca45d1d11cc586c635478/mclumix-0.0.0.0.7.tar.gz#sha256=86f74b09309b88bc718b9c63a60b8198a6487b8d92f765272679727d6e0de5c2 from build tracker '/tmp/pip-req-tracker-_i1a9amr'
2022-02-07T23:34:22,229 Created temporary directory: /tmp/pip-unpack-dipf6o9t
2022-02-07T23:34:22,230 Building wheels for collected packages: mclumix
2022-02-07T23:34:22,238   Created temporary directory: /tmp/pip-wheel-4co8edc5
2022-02-07T23:34:22,239   Building wheel for mclumix (setup.py): started
2022-02-07T23:34:22,240   Destination directory: /tmp/pip-wheel-4co8edc5
2022-02-07T23:34:22,241   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-11ab1zq7/mclumix_67b1486588444fa1afa7743fbe3698c4/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-11ab1zq7/mclumix_67b1486588444fa1afa7743fbe3698c4/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-4co8edc5
2022-02-07T23:34:23,800   Warning: 'keywords' should be a list, got type 'tuple'
2022-02-07T23:34:24,240   running bdist_wheel
2022-02-07T23:34:24,249   running build
2022-02-07T23:34:24,250   running build_py
2022-02-07T23:34:24,258   creating build
2022-02-07T23:34:24,259   creating build/lib
2022-02-07T23:34:24,260   creating build/lib/mclumi
2022-02-07T23:34:24,262   copying mclumi/__init__.py -> build/lib/mclumi
2022-02-07T23:34:24,265   copying mclumi/Path.py -> build/lib/mclumi
2022-02-07T23:34:24,268   copying mclumi/Main.py -> build/lib/mclumi
2022-02-07T23:34:24,274   creating build/lib/mclumi/trim
2022-02-07T23:34:24,276   copying mclumi/trim/Filter.py -> build/lib/mclumi/trim
2022-02-07T23:34:24,279   copying mclumi/trim/__init__.py -> build/lib/mclumi/trim
2022-02-07T23:34:24,282   copying mclumi/trim/Template.py -> build/lib/mclumi/trim
2022-02-07T23:34:24,286   copying mclumi/trim/Fixed.py -> build/lib/mclumi/trim
2022-02-07T23:34:24,290   copying mclumi/trim/Reader.py -> build/lib/mclumi/trim
2022-02-07T23:34:24,293   copying mclumi/trim/BCRuleOut.py -> build/lib/mclumi/trim
2022-02-07T23:34:24,296   copying mclumi/trim/UMIRuleOut.py -> build/lib/mclumi/trim
2022-02-07T23:34:24,299   copying mclumi/trim/SeqRuleOut.py -> build/lib/mclumi/trim
2022-02-07T23:34:24,304   creating build/lib/mclumi/external
2022-02-07T23:34:24,305   copying mclumi/external/__init__.py -> build/lib/mclumi/external
2022-02-07T23:34:24,308   copying mclumi/external/UMItoolsSamMethods.py -> build/lib/mclumi/external
2022-02-07T23:34:24,315   creating build/lib/mclumi/plot
2022-02-07T23:34:24,316   copying mclumi/plot/Graph.py -> build/lib/mclumi/plot
2022-02-07T23:34:24,320   copying mclumi/plot/__init__.py -> build/lib/mclumi/plot
2022-02-07T23:34:24,324   creating build/lib/mclumi/util
2022-02-07T23:34:24,326   copying mclumi/util/Console.py -> build/lib/mclumi/util
2022-02-07T23:34:24,329   copying mclumi/util/__init__.py -> build/lib/mclumi/util
2022-02-07T23:34:24,333   copying mclumi/util/Single.py -> build/lib/mclumi/util
2022-02-07T23:34:24,336   copying mclumi/util/Number.py -> build/lib/mclumi/util
2022-02-07T23:34:24,339   copying mclumi/util/Hamming.py -> build/lib/mclumi/util
2022-02-07T23:34:24,342   copying mclumi/util/Reader.py -> build/lib/mclumi/util
2022-02-07T23:34:24,346   copying mclumi/util/Writer.py -> build/lib/mclumi/util
2022-02-07T23:34:24,349   copying mclumi/util/Folder.py -> build/lib/mclumi/util
2022-02-07T23:34:24,353   creating build/lib/mclumi/align
2022-02-07T23:34:24,355   copying mclumi/align/__init__.py -> build/lib/mclumi/align
2022-02-07T23:34:24,358   copying mclumi/align/Write.py -> build/lib/mclumi/align
2022-02-07T23:34:24,362   copying mclumi/align/BundlePos.py -> build/lib/mclumi/align
2022-02-07T23:34:24,365   copying mclumi/align/Read.py -> build/lib/mclumi/align
2022-02-07T23:34:24,370   creating build/lib/mclumi/fastq
2022-02-07T23:34:24,372   copying mclumi/fastq/__init__.py -> build/lib/mclumi/fastq
2022-02-07T23:34:24,375   copying mclumi/fastq/Write.py -> build/lib/mclumi/fastq
2022-02-07T23:34:24,378   copying mclumi/fastq/Read.py -> build/lib/mclumi/fastq
2022-02-07T23:34:24,383   creating build/lib/mclumi/network
2022-02-07T23:34:24,384   copying mclumi/network/Adjacency.py -> build/lib/mclumi/network
2022-02-07T23:34:24,388   copying mclumi/network/__init__.py -> build/lib/mclumi/network
2022-02-07T23:34:24,392   copying mclumi/network/CC.py -> build/lib/mclumi/network
2022-02-07T23:34:24,396   copying mclumi/network/Edge.py -> build/lib/mclumi/network
2022-02-07T23:34:24,400   creating build/lib/mclumi/deduplicate
2022-02-07T23:34:24,402   copying mclumi/deduplicate/__init__.py -> build/lib/mclumi/deduplicate
2022-02-07T23:34:24,407   creating build/lib/mclumi/deduplicate/trimer
2022-02-07T23:34:24,408   copying mclumi/deduplicate/trimer/__init__.py -> build/lib/mclumi/deduplicate/trimer
2022-02-07T23:34:24,411   copying mclumi/deduplicate/trimer/Transloc.py -> build/lib/mclumi/deduplicate/trimer
2022-02-07T23:34:24,417   creating build/lib/mclumi/deduplicate/monomer
2022-02-07T23:34:24,418   copying mclumi/deduplicate/monomer/DedupGene.py -> build/lib/mclumi/deduplicate/monomer
2022-02-07T23:34:24,424   copying mclumi/deduplicate/monomer/Build.py -> build/lib/mclumi/deduplicate/monomer
2022-02-07T23:34:24,428   copying mclumi/deduplicate/monomer/Adjacency.py -> build/lib/mclumi/deduplicate/monomer
2022-02-07T23:34:24,431   copying mclumi/deduplicate/monomer/__init__.py -> build/lib/mclumi/deduplicate/monomer
2022-02-07T23:34:24,434   copying mclumi/deduplicate/monomer/Cluster.py -> build/lib/mclumi/deduplicate/monomer
2022-02-07T23:34:24,438   copying mclumi/deduplicate/monomer/MarkovClustering.py -> build/lib/mclumi/deduplicate/monomer
2022-02-07T23:34:24,443   copying mclumi/deduplicate/monomer/Build_test.py -> build/lib/mclumi/deduplicate/monomer
2022-02-07T23:34:24,446   copying mclumi/deduplicate/monomer/DedupPos.py -> build/lib/mclumi/deduplicate/monomer
2022-02-07T23:34:24,452   copying mclumi/deduplicate/monomer/DedupPos_test.py -> build/lib/mclumi/deduplicate/monomer
2022-02-07T23:34:24,458   copying mclumi/deduplicate/monomer/DedupBasic.py -> build/lib/mclumi/deduplicate/monomer
2022-02-07T23:34:24,463   copying mclumi/deduplicate/monomer/DedupSC.py -> build/lib/mclumi/deduplicate/monomer
2022-02-07T23:34:24,469   copying mclumi/deduplicate/monomer/Directional.py -> build/lib/mclumi/deduplicate/monomer
2022-02-07T23:34:24,473   running egg_info
2022-02-07T23:34:24,548   writing manifest file 'mclumix.egg-info/SOURCES.txt'
2022-02-07T23:34:24,576   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-02-07T23:34:24,576     setuptools.SetuptoolsDeprecationWarning,
2022-02-07T23:34:24,580   running install
2022-02-07T23:34:24,643   running install_lib
2022-02-07T23:34:24,650   creating build/bdist.linux-armv7l
2022-02-07T23:34:24,650   creating build/bdist.linux-armv7l/wheel
2022-02-07T23:34:24,654   creating build/bdist.linux-armv7l/wheel/mclumi
2022-02-07T23:34:24,661   creating build/bdist.linux-armv7l/wheel/mclumi/trim
2022-02-07T23:34:24,691   creating build/bdist.linux-armv7l/wheel/mclumi/external
2022-02-07T23:34:24,702   creating build/bdist.linux-armv7l/wheel/mclumi/plot
2022-02-07T23:34:24,711   creating build/bdist.linux-armv7l/wheel/mclumi/util
2022-02-07T23:34:24,739   creating build/bdist.linux-armv7l/wheel/mclumi/align
2022-02-07T23:34:24,766   creating build/bdist.linux-armv7l/wheel/mclumi/fastq
2022-02-07T23:34:24,777   creating build/bdist.linux-armv7l/wheel/mclumi/network
2022-02-07T23:34:24,793   creating build/bdist.linux-armv7l/wheel/mclumi/deduplicate
2022-02-07T23:34:24,798   creating build/bdist.linux-armv7l/wheel/mclumi/deduplicate/trimer
2022-02-07T23:34:24,807   creating build/bdist.linux-armv7l/wheel/mclumi/deduplicate/monomer
2022-02-07T23:34:24,860   running install_egg_info
2022-02-07T23:34:24,875   Copying mclumix.egg-info to build/bdist.linux-armv7l/wheel/mclumix-0.0.0.0.7-py3.7.egg-info
2022-02-07T23:34:24,896   running install_scripts
2022-02-07T23:34:25,446   Building wheel for mclumix (setup.py): finished with status 'done'
2022-02-07T23:34:25,453   Created wheel for mclumix: filename=mclumix-0.0.0.0.7-py3-none-any.whl size=77835 sha256=1aaf50a8eb5e01775f6ed5f0c6801f8cb41b2dfa87a7471882e1b47ba178cebc
2022-02-07T23:34:25,453   Stored in directory: /tmp/pip-ephem-wheel-cache-54scyo4a/wheels/e8/d1/fe/5b6cb6a9a08813d58819ca348de9c30c4ec7bf08fd885f801c
2022-02-07T23:34:25,477 Successfully built mclumix
2022-02-07T23:34:25,489 Removed build tracker: '/tmp/pip-req-tracker-_i1a9amr'