2022-02-09T01:36:39,203 Created temporary directory: /tmp/pip-ephem-wheel-cache-atzlgm0h 2022-02-09T01:36:39,209 Created temporary directory: /tmp/pip-req-tracker-df20_y8s 2022-02-09T01:36:39,210 Initialized build tracking at /tmp/pip-req-tracker-df20_y8s 2022-02-09T01:36:39,211 Created build tracker: /tmp/pip-req-tracker-df20_y8s 2022-02-09T01:36:39,211 Entered build tracker: /tmp/pip-req-tracker-df20_y8s 2022-02-09T01:36:39,212 Created temporary directory: /tmp/pip-wheel-i0gzysw2 2022-02-09T01:36:39,287 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-02-09T01:36:39,293 2 location(s) to search for versions of oxdna-analysis-tools: 2022-02-09T01:36:39,293 * https://pypi.org/simple/oxdna-analysis-tools/ 2022-02-09T01:36:39,293 * https://www.piwheels.org/simple/oxdna-analysis-tools/ 2022-02-09T01:36:39,295 Fetching project page and analyzing links: https://pypi.org/simple/oxdna-analysis-tools/ 2022-02-09T01:36:39,295 Getting page https://pypi.org/simple/oxdna-analysis-tools/ 2022-02-09T01:36:39,299 Found index url https://pypi.org/simple 2022-02-09T01:36:39,532 Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/ac/f8/60aaa35eef859722960ae6fc01c379801cfe84dac081cb16bc5211209e00/oxDNA_analysis_tools-1.0.0-py3-none-any.whl#sha256=aad31ef6b41c10ea9ed03f1625b7ee8ce0834704a848c6e1f6c28dce20b2711b (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-09T01:36:39,533 Found link https://files.pythonhosted.org/packages/4a/e5/47c5d6daa03dabd733883bf55cb8d816ea67d906f1fcb488f5153f4dc43e/oxDNA_analysis_tools-1.0.0.tar.gz#sha256=a75fb26c9d1d87688c7312fdd6d2e1bd16230c8f74f80fb2291eeaf168c056ee (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.0 2022-02-09T01:36:39,534 Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/89/ff/395029dea21f844393d989cbb26c614dd86f822bba65d78ed5a7748aca6a/oxDNA_analysis_tools-1.0.1-py3-none-any.whl#sha256=3221408dd47a42b38484906b35d19479588ff4069288f9ce7d7817897da455c7 (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-09T01:36:39,536 Found link https://files.pythonhosted.org/packages/df/13/17bfb0a3fd14aa842b566f34308d54529d61ea01fada217af9048971d50c/oxDNA_analysis_tools-1.0.1.tar.gz#sha256=a3e8ae09b1258872561a5559f458a72942879cba8a07a0f24caaec7e409d4cb1 (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.1 2022-02-09T01:36:39,536 Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/82/49/f5e696f37f5715a0aeb1ef04eb86660c5659ef4bf2f4fb8903dc7227e118/oxDNA_analysis_tools-1.0.2-py3-none-any.whl#sha256=16719e55b02c4da05c3f2f954c4e5dc43e599213876539e8abff5160cd0caece (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-09T01:36:39,538 Found link https://files.pythonhosted.org/packages/bd/6b/e166213edbf00187bef6d70c7daee7bc8625c0bd19ac3ae69c8539ae7a7e/oxDNA_analysis_tools-1.0.2.tar.gz#sha256=eb4037d3f8bd3fba22869a4943f22150ae63490cd50545d1111b07d3c451888b (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.2 2022-02-09T01:36:39,538 Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/b6/48/a7c32e7f8151ef9264a06fd34867dea00837b051bdf5bbcbb47885f73255/oxDNA_analysis_tools-1.0.3-py3-none-any.whl#sha256=625f26605d02045c0d28fddac24dd9d32c7c24955523934f2e6b51b6f65a2ab3 (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-09T01:36:39,540 Found link 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(requires-python:>=3.6), version: 1.0.4 2022-02-09T01:36:39,543 Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/bf/0d/a9da9beb9a7bd71866a835fa8aa2f07811d666644c916aa2765add616e05/oxDNA_analysis_tools-1.0.5-py3-none-any.whl#sha256=7edbf6f2d55ac4cb5f7fecd7cf00df2c38f92710de1da90559ddc92d622c827f (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-09T01:36:39,544 Found link https://files.pythonhosted.org/packages/89/1d/8292c563a5aaad1f604049db7273368ea18b868c75dc2d88b70695ac3bbd/oxDNA_analysis_tools-1.0.5.tar.gz#sha256=6c993e210fbe9f3d1d7f85d615419e2687f8f780bc1f94716fc9bb59f47db9fd (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.5 2022-02-09T01:36:39,545 Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/4d/bb/b8db0b9c032ff28cc4416a2f4d6ad23a76aef3e1ba5267575dfd67556dbe/oxDNA_analysis_tools-1.0.6-py3-none-any.whl#sha256=30e9c00532d7b9c8d9876edbd22c3ee61093f218989258c609beadb08a8afe19 (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-09T01:36:39,546 Found link https://files.pythonhosted.org/packages/af/d8/35c3b16794c06b397d557c1bc6b83ab0eda0814de98da27f0628edf2063e/oxDNA_analysis_tools-1.0.6.tar.gz#sha256=cd34e60a12cb017227149fc4eda547bfd1765e6284737ce0c6876eb8194d5382 (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.6 2022-02-09T01:36:39,547 Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/be/a3/cc70bdfe6b395781f50993e434cd72ada4251f9611ab31d0c193b89849b4/oxDNA_analysis_tools-1.0.7-py3-none-any.whl#sha256=e349b207881d5f98299f840374d9e24ece1f2a50a479e36ccad845c7348b2b62 (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-09T01:36:39,548 Found link https://files.pythonhosted.org/packages/ab/e7/8a95d69c541da3d610ac86d2cc7d736aec8ab9587ffc805d0d4d1eef44ff/oxDNA_analysis_tools-1.0.7.tar.gz#sha256=8a13a4cb9dfa369c54579516d0e9525813454307cda7b4cd80e7bff92e38cc4a (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.7 2022-02-09T01:36:39,549 Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/f1/9a/055e3748453dc8eaea2d12cc2f71dfd5db1a93ab60f0d60f85c9ff0462a6/oxDNA_analysis_tools-1.0.8-py3-none-any.whl#sha256=a2184f818ca2a53ae01c2087e853ef0519d9a04f38f8d1026d7318b72b3a9c4d (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-09T01:36:39,550 Found link https://files.pythonhosted.org/packages/bf/5d/04a82031d0f96d67578e3b864fdc087e04a637af58ef526bee6009df36cf/oxDNA_analysis_tools-1.0.8.tar.gz#sha256=c0f9ce1b79c645350c553c960e9c10638bea05725d5d0e32c7b501b4078a9a4c (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.8 2022-02-09T01:36:39,551 Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/8c/95/bb966fe3dbc3d84b5a97f30c0071cec3525475ca6d70eefd05de0486c66b/oxDNA_analysis_tools-1.0.9-py3-none-any.whl#sha256=847c4f63f46ed40e9700bba494875225922c7f12215b321aca687503ef05a3fd (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-09T01:36:39,552 Found link https://files.pythonhosted.org/packages/db/4e/4e19649594cfeb11512b376c6b6e64a6a8354dd68a422b8221d1e7562139/oxDNA_analysis_tools-1.0.9.tar.gz#sha256=3ef717b28f5f9d74e7eecc89a27fa98c07af761b4d9f75324b55bdb2cb450c2b (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.9 2022-02-09T01:36:39,553 Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/67/90/5a0d0aa16863c43c624f37ebb6dce78b9ae4d8f5bd3b3e60963382fbeb3a/oxDNA_analysis_tools-1.0.12-py3-none-any.whl#sha256=292e000a42eb4df44ab0fdc1896d7554a6839ec9adb8bb350dd7017116aec577 (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-09T01:36:39,554 Found link https://files.pythonhosted.org/packages/dd/ee/a25cb9abd84882306389318f74d19f3b40bcdaed4caaca0fbf223a228027/oxDNA_analysis_tools-1.0.12.tar.gz#sha256=c837756ed512c604b3356ea1375cc68472eaf28c2497e5449a0a72d60a30542f (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.12 2022-02-09T01:36:39,555 Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/c7/ac/0f3583f256e299ca951a027d0e8f5bfb0ec6b9be9481dd722b93d5b57a6e/oxDNA_analysis_tools-1.0.13-py3-none-any.whl#sha256=b8433f34d26d3dfc90b30096177f1d2ae3602d11bb7f32bb14e89f2c35da500f (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-09T01:36:39,556 Found link https://files.pythonhosted.org/packages/5e/f2/22a968ab6f1e5d2a7371584d97fba66952d1aa88c9cf0a05284d7415a6c9/oxDNA_analysis_tools-1.0.13.tar.gz#sha256=711b694c0dc981aff9b766d19b90e7d82110ebfa2757c2e32fdf35f59484071c (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.13 2022-02-09T01:36:39,557 Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/54/c0/eeea8580a5a1cc4498cc09ae0e4efbc71d804a3bbbaf43747195f5e51e5f/oxDNA_analysis_tools-1.0.14-py3-none-any.whl#sha256=1c18043c07d6f39256bbbe18823087400c726479a4e02582d1820a2504f97842 (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-09T01:36:39,559 Found link https://files.pythonhosted.org/packages/c5/4b/a8ea03fa1cb45bdb35dc793e20c2eeda48dc72d22ca81e23c873eb5996ad/oxDNA_analysis_tools-1.0.14.tar.gz#sha256=402c516c3256a87ddebe3c4a0032bc2d156568c1c8f3893e83dc0278654cdcf4 (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.14 2022-02-09T01:36:39,560 Fetching project page and analyzing links: https://www.piwheels.org/simple/oxdna-analysis-tools/ 2022-02-09T01:36:39,560 Getting page https://www.piwheels.org/simple/oxdna-analysis-tools/ 2022-02-09T01:36:39,563 Found index url https://www.piwheels.org/simple 2022-02-09T01:36:39,786 Skipping link: No binaries permitted for oxdna-analysis-tools: https://www.piwheels.org/simple/oxdna-analysis-tools/oxDNA_analysis_tools-1.0.0-py3-none-any.whl#sha256=c32c816be37a1c53155d220930ed097d981c7cbf0fd9b6d794860b226d93faf8 (from https://www.piwheels.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-09T01:36:39,787 Skipping link: No binaries permitted for oxdna-analysis-tools: https://www.piwheels.org/simple/oxdna-analysis-tools/oxDNA_analysis_tools-1.0.1-py3-none-any.whl#sha256=0ca7f983b569de7181fe802c33f7d89e60f0dd8bc6bdccca11004157f8a15e11 (from https://www.piwheels.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-09T01:36:39,788 Skipping link: No binaries permitted for oxdna-analysis-tools: https://www.piwheels.org/simple/oxdna-analysis-tools/oxDNA_analysis_tools-1.0.12-py3-none-any.whl#sha256=30078964442db3a8fdee670295f4056cb4666ad6fdf1eaf2bc4a80a86d054b2b (from https://www.piwheels.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-09T01:36:39,788 Skipping link: No binaries permitted for oxdna-analysis-tools: https://www.piwheels.org/simple/oxdna-analysis-tools/oxDNA_analysis_tools-1.0.13-py3-none-any.whl#sha256=3a83f902a80b3bc811ce9be9c6dc4aaea3e915b03c673e0639d9c4ebf534dcef (from https://www.piwheels.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-09T01:36:39,789 Skipping link: No binaries permitted for oxdna-analysis-tools: https://www.piwheels.org/simple/oxdna-analysis-tools/oxDNA_analysis_tools-1.0.2-py3-none-any.whl#sha256=6a6b25f8023f325afd5a76bc15448dc0e660cf2ef82f3c62ca393db17f5984f6 (from https://www.piwheels.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-09T01:36:39,789 Skipping link: No binaries permitted for oxdna-analysis-tools: https://www.piwheels.org/simple/oxdna-analysis-tools/oxDNA_analysis_tools-1.0.3-py3-none-any.whl#sha256=2d0c7a78c5b92be1d8835f7975ad51b9fe25a3d8b659711ae20c82f37003f36f (from https://www.piwheels.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-09T01:36:39,790 Skipping link: No binaries permitted for oxdna-analysis-tools: https://www.piwheels.org/simple/oxdna-analysis-tools/oxDNA_analysis_tools-1.0.4-py3-none-any.whl#sha256=2796c6b7ccce7a9681045e5823ea6d8ba3a768fd645335d6a74f64eb1b183aed (from https://www.piwheels.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-09T01:36:39,790 Skipping link: No binaries permitted for oxdna-analysis-tools: https://www.piwheels.org/simple/oxdna-analysis-tools/oxDNA_analysis_tools-1.0.5-py3-none-any.whl#sha256=c2ff7807b831fb3247b3d8f7d21229442ed7dc63a97bb8d3d57016ab2d179e84 (from https://www.piwheels.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-09T01:36:39,791 Skipping link: No binaries permitted for oxdna-analysis-tools: https://www.piwheels.org/simple/oxdna-analysis-tools/oxDNA_analysis_tools-1.0.6-py3-none-any.whl#sha256=3e3793c4a59dd64f86e2733487678785a4e2b86e46e2495f1fb14468b859e683 (from https://www.piwheels.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-09T01:36:39,791 Skipping link: No binaries permitted for oxdna-analysis-tools: https://www.piwheels.org/simple/oxdna-analysis-tools/oxDNA_analysis_tools-1.0.7-py3-none-any.whl#sha256=f98b328d052365f8a32ef8410ae09dea05cb705511e95eb0393c3f3642c30345 (from https://www.piwheels.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-09T01:36:39,792 Skipping link: No binaries permitted for oxdna-analysis-tools: https://www.piwheels.org/simple/oxdna-analysis-tools/oxDNA_analysis_tools-1.0.8-py3-none-any.whl#sha256=1283ef9ec8cf833ed1d09f9d032d3d445f65ffd94c9e96836bc093450f0657e8 (from https://www.piwheels.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-09T01:36:39,792 Skipping link: No binaries permitted for oxdna-analysis-tools: https://www.piwheels.org/simple/oxdna-analysis-tools/oxDNA_analysis_tools-1.0.9-py3-none-any.whl#sha256=b6d6e0388ab5ef2ddd3a2708a52c81f7bc4b52cf1e8ff7ea877f74738e2677ba (from https://www.piwheels.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-09T01:36:39,793 Skipping link: not a file: https://www.piwheels.org/simple/oxdna-analysis-tools/ 2022-02-09T01:36:39,793 Skipping link: not a file: https://pypi.org/simple/oxdna-analysis-tools/ 2022-02-09T01:36:39,831 Given no hashes to check 1 links for project 'oxdna-analysis-tools': discarding no candidates 2022-02-09T01:36:39,862 Collecting oxdna-analysis-tools==1.0.14 2022-02-09T01:36:39,865 Created temporary directory: /tmp/pip-unpack-wyt450b4 2022-02-09T01:36:40,303 Downloading oxDNA_analysis_tools-1.0.14.tar.gz (129 kB) 2022-02-09T01:36:40,633 Added oxdna-analysis-tools==1.0.14 from https://files.pythonhosted.org/packages/c5/4b/a8ea03fa1cb45bdb35dc793e20c2eeda48dc72d22ca81e23c873eb5996ad/oxDNA_analysis_tools-1.0.14.tar.gz#sha256=402c516c3256a87ddebe3c4a0032bc2d156568c1c8f3893e83dc0278654cdcf4 to build tracker '/tmp/pip-req-tracker-df20_y8s' 2022-02-09T01:36:40,642 Created temporary directory: /tmp/pip-build-env-y6qdj9_n 2022-02-09T01:36:40,656 Created temporary directory: /tmp/pip-standalone-pip-9nsr4yzn 2022-02-09T01:36:42,524 Installing build dependencies: started 2022-02-09T01:36:42,525 Running command /usr/bin/python3 /tmp/pip-standalone-pip-9nsr4yzn/__env_pip__.zip/pip install --ignore-installed --no-user --prefix /tmp/pip-build-env-y6qdj9_n/overlay --no-warn-script-location -v --no-binary oxdna-analysis-tools --only-binary :none: -i https://pypi.org/simple --extra-index-url https://www.piwheels.org/simple --prefer-binary -- 'setuptools>=42' wheel 2022-02-09T01:36:50,608 Using pip 21.3.1 from /tmp/pip-standalone-pip-9nsr4yzn/__env_pip__.zip/pip (python 3.7) 2022-02-09T01:36:51,421 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-02-09T01:36:56,431 Collecting setuptools>=42 2022-02-09T01:36:56,674 Using cached https://www.piwheels.org/simple/setuptools/setuptools-60.8.1-py3-none-any.whl (1.1 MB) 2022-02-09T01:36:57,438 Collecting wheel 2022-02-09T01:36:57,475 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-02-09T01:37:01,440 Installing collected packages: wheel, setuptools 2022-02-09T01:37:01,756 Creating /tmp/pip-build-env-y6qdj9_n/overlay/bin 2022-02-09T01:37:01,761 changing mode of /tmp/pip-build-env-y6qdj9_n/overlay/bin/wheel to 755 2022-02-09T01:37:05,506 Successfully installed setuptools-60.8.1 wheel-0.37.1 2022-02-09T01:37:05,681 WARNING: You are using pip version 21.3.1; however, version 22.0.3 is available. 2022-02-09T01:37:05,681 You should consider upgrading via the '/usr/bin/python3 -m pip install --upgrade pip' command. 2022-02-09T01:37:06,080 Installing build dependencies: finished with status 'done' 2022-02-09T01:37:06,101 Getting requirements to build wheel: started 2022-02-09T01:37:06,102 Running command /usr/bin/python3 /usr/local/lib/python3.7/dist-packages/pip/_vendor/pep517/in_process/_in_process.py get_requires_for_build_wheel /tmp/tmp6u6gjhm4 2022-02-09T01:37:07,995 running egg_info 2022-02-09T01:37:08,063 writing manifest file 'src/oxDNA_analysis_tools.egg-info/SOURCES.txt' 2022-02-09T01:37:08,067 ################################################################################ 2022-02-09T01:37:08,068 All set up! All scripts in the package can now be run from the command line with 2022-02-09T01:37:08,069 oat 2022-02-09T01:37:08,070 importing functions in your own scripts can be done with 2022-02-09T01:37:08,071 from oxDNA_analysis_tools. import 2022-02-09T01:37:08,072 If you would like to enable autocomplete in Bash, either add 2022-02-09T01:37:08,073 source oat-completion.sh 2022-02-09T01:37:08,073 to your .bashrc or run 2022-02-09T01:37:08,074 sudo cp oat-completion.sh /etc/bash_completion.d/ 2022-02-09T01:37:08,075 to make autocompletes available to all users. 2022-02-09T01:37:08,192 Getting requirements to build wheel: finished with status 'done' 2022-02-09T01:37:08,210 Created temporary directory: /tmp/pip-modern-metadata-_0_czqck 2022-02-09T01:37:08,216 Preparing metadata (pyproject.toml): started 2022-02-09T01:37:08,217 Running command /usr/bin/python3 /usr/local/lib/python3.7/dist-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /tmp/tmpvqerv7y2 2022-02-09T01:37:09,977 running dist_info 2022-02-09T01:37:10,007 creating /tmp/pip-modern-metadata-_0_czqck/oxDNA_analysis_tools.egg-info 2022-02-09T01:37:10,025 writing manifest file '/tmp/pip-modern-metadata-_0_czqck/oxDNA_analysis_tools.egg-info/SOURCES.txt' 2022-02-09T01:37:10,063 writing manifest file '/tmp/pip-modern-metadata-_0_czqck/oxDNA_analysis_tools.egg-info/SOURCES.txt' 2022-02-09T01:37:10,208 ################################################################################ 2022-02-09T01:37:10,209 All set up! All scripts in the package can now be run from the command line with 2022-02-09T01:37:10,209 oat 2022-02-09T01:37:10,210 importing functions in your own scripts can be done with 2022-02-09T01:37:10,210 from oxDNA_analysis_tools. import 2022-02-09T01:37:10,211 If you would like to enable autocomplete in Bash, either add 2022-02-09T01:37:10,212 source oat-completion.sh 2022-02-09T01:37:10,213 to your .bashrc or run 2022-02-09T01:37:10,213 sudo cp oat-completion.sh /etc/bash_completion.d/ 2022-02-09T01:37:10,214 to make autocompletes available to all users. 2022-02-09T01:37:10,340 Preparing metadata (pyproject.toml): finished with status 'done' 2022-02-09T01:37:10,355 Source in /tmp/pip-wheel-i0gzysw2/oxdna-analysis-tools_19df3c907c904be38c1752e8bd1b9a6b has version 1.0.14, which satisfies requirement oxdna-analysis-tools==1.0.14 from https://files.pythonhosted.org/packages/c5/4b/a8ea03fa1cb45bdb35dc793e20c2eeda48dc72d22ca81e23c873eb5996ad/oxDNA_analysis_tools-1.0.14.tar.gz#sha256=402c516c3256a87ddebe3c4a0032bc2d156568c1c8f3893e83dc0278654cdcf4 2022-02-09T01:37:10,357 Removed oxdna-analysis-tools==1.0.14 from https://files.pythonhosted.org/packages/c5/4b/a8ea03fa1cb45bdb35dc793e20c2eeda48dc72d22ca81e23c873eb5996ad/oxDNA_analysis_tools-1.0.14.tar.gz#sha256=402c516c3256a87ddebe3c4a0032bc2d156568c1c8f3893e83dc0278654cdcf4 from build tracker '/tmp/pip-req-tracker-df20_y8s' 2022-02-09T01:37:10,372 Created temporary directory: /tmp/pip-unpack-uzt5z4mb 2022-02-09T01:37:10,373 Building wheels for collected packages: oxdna-analysis-tools 2022-02-09T01:37:10,381 Created temporary directory: /tmp/pip-wheel-2fz8aeoo 2022-02-09T01:37:10,382 Destination directory: /tmp/pip-wheel-2fz8aeoo 2022-02-09T01:37:10,387 Building wheel for oxdna-analysis-tools (pyproject.toml): started 2022-02-09T01:37:10,388 Running command /usr/bin/python3 /usr/local/lib/python3.7/dist-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmpdf_sju0_ 2022-02-09T01:37:12,218 running bdist_wheel 2022-02-09T01:37:12,636 running build 2022-02-09T01:37:12,637 running build_py 2022-02-09T01:37:12,648 creating build 2022-02-09T01:37:12,648 creating build/lib 2022-02-09T01:37:12,650 creating build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,652 copying src/oxDNA_analysis_tools/superimpose.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,657 copying src/oxDNA_analysis_tools/__init__.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,660 copying src/oxDNA_analysis_tools/output_bonds.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,664 copying src/oxDNA_analysis_tools/config.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,667 copying src/oxDNA_analysis_tools/multidimensional_scaling_mean.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,672 copying src/oxDNA_analysis_tools/entry.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,675 copying src/oxDNA_analysis_tools/mean2dat.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,678 copying src/oxDNA_analysis_tools/distance.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,683 copying src/oxDNA_analysis_tools/duplex_angle_plotter.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,688 copying src/oxDNA_analysis_tools/clustering.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,692 copying src/oxDNA_analysis_tools/align_trajectory.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,696 copying src/oxDNA_analysis_tools/contact_map.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,700 copying src/oxDNA_analysis_tools/db_to_force.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,703 copying src/oxDNA_analysis_tools/pca.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,708 copying src/oxDNA_analysis_tools/compute_deviations.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,712 copying src/oxDNA_analysis_tools/p_align.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,716 copying src/oxDNA_analysis_tools/bond_analysis.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,720 copying src/oxDNA_analysis_tools/compute_mean.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,725 copying src/oxDNA_analysis_tools/duplex_angle_finder.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,729 copying src/oxDNA_analysis_tools/index.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,733 copying src/oxDNA_analysis_tools/subset_trajectory.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,736 copying src/oxDNA_analysis_tools/backbone_flexibility.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,741 copying src/oxDNA_analysis_tools/eRMSD.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,745 copying src/oxDNA_analysis_tools/minify.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,749 copying src/oxDNA_analysis_tools/oxDNA_PDB.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,754 copying src/oxDNA_analysis_tools/anm_parametrize.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,757 copying src/oxDNA_analysis_tools/pca_experimental.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,762 copying src/oxDNA_analysis_tools/plot_energy.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,766 copying src/oxDNA_analysis_tools/generate_force.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,769 copying src/oxDNA_analysis_tools/forces2pairs.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,772 copying src/oxDNA_analysis_tools/centroid.py -> build/lib/oxDNA_analysis_tools 2022-02-09T01:37:12,778 creating build/lib/oxDNA_analysis_tools/external_force_utils 2022-02-09T01:37:12,779 copying src/oxDNA_analysis_tools/external_force_utils/exclude_force.py -> build/lib/oxDNA_analysis_tools/external_force_utils 2022-02-09T01:37:12,783 copying src/oxDNA_analysis_tools/external_force_utils/__init__.py -> build/lib/oxDNA_analysis_tools/external_force_utils 2022-02-09T01:37:12,786 copying src/oxDNA_analysis_tools/external_force_utils/force_reader.py -> build/lib/oxDNA_analysis_tools/external_force_utils 2022-02-09T01:37:12,790 copying src/oxDNA_analysis_tools/external_force_utils/forces.py -> build/lib/oxDNA_analysis_tools/external_force_utils 2022-02-09T01:37:12,797 creating build/lib/oxDNA_analysis_tools/UTILS 2022-02-09T01:37:12,798 copying src/oxDNA_analysis_tools/UTILS/all_vectors.py -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-09T01:37:12,802 copying src/oxDNA_analysis_tools/UTILS/parallelize_lorenzo_onefile.py -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-09T01:37:12,805 copying src/oxDNA_analysis_tools/UTILS/__init__.py -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-09T01:37:12,808 copying src/oxDNA_analysis_tools/UTILS/utils.py -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-09T01:37:12,811 copying src/oxDNA_analysis_tools/UTILS/micha_reader.py -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-09T01:37:12,815 copying src/oxDNA_analysis_tools/UTILS/parallelize_erik_onefile.py -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-09T01:37:12,818 copying src/oxDNA_analysis_tools/UTILS/parallelize_erik_multifile.py -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-09T01:37:12,822 copying src/oxDNA_analysis_tools/UTILS/base_array.py -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-09T01:37:12,826 copying src/oxDNA_analysis_tools/UTILS/protein_to_pdb.py -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-09T01:37:12,830 copying src/oxDNA_analysis_tools/UTILS/pdb.py -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-09T01:37:12,834 copying src/oxDNA_analysis_tools/UTILS/readers.py -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-09T01:37:12,838 copying src/oxDNA_analysis_tools/UTILS/geom.py -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-09T01:37:12,843 copying src/oxDNA_analysis_tools/UTILS/base.py -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-09T01:37:12,851 copying src/oxDNA_analysis_tools/UTILS/parallelize_lorenzo_multifile.py -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-09T01:37:12,854 running egg_info 2022-02-09T01:37:12,928 writing manifest file 'src/oxDNA_analysis_tools.egg-info/SOURCES.txt' 2022-02-09T01:37:12,933 copying src/oxDNA_analysis_tools/UTILS/dd12_na.pdb -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-09T01:37:12,941 copying src/oxDNA_analysis_tools/UTILS/model.h -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-09T01:37:12,946 copying src/oxDNA_analysis_tools/UTILS/rna_model.h -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-09T01:37:12,972 running install 2022-02-09T01:37:13,035 running install_lib 2022-02-09T01:37:13,042 creating build/bdist.linux-armv7l 2022-02-09T01:37:13,043 creating build/bdist.linux-armv7l/wheel 2022-02-09T01:37:13,047 creating build/bdist.linux-armv7l/wheel/oxDNA_analysis_tools 2022-02-09T01:37:13,171 creating build/bdist.linux-armv7l/wheel/oxDNA_analysis_tools/external_force_utils 2022-02-09T01:37:13,188 creating build/bdist.linux-armv7l/wheel/oxDNA_analysis_tools/UTILS 2022-02-09T01:37:13,263 running install_egg_info 2022-02-09T01:37:13,278 Copying src/oxDNA_analysis_tools.egg-info to build/bdist.linux-armv7l/wheel/oxDNA_analysis_tools-1.0.14-py3.7.egg-info 2022-02-09T01:37:13,300 running install_scripts 2022-02-09T01:37:13,767 ################################################################################ 2022-02-09T01:37:13,768 All set up! All scripts in the package can now be run from the command line with 2022-02-09T01:37:13,768 oat 2022-02-09T01:37:13,769 importing functions in your own scripts can be done with 2022-02-09T01:37:13,770 from oxDNA_analysis_tools. import 2022-02-09T01:37:13,771 If you would like to enable autocomplete in Bash, either add 2022-02-09T01:37:13,772 source oat-completion.sh 2022-02-09T01:37:13,773 to your .bashrc or run 2022-02-09T01:37:13,774 sudo cp oat-completion.sh /etc/bash_completion.d/ 2022-02-09T01:37:13,775 to make autocompletes available to all users. 2022-02-09T01:37:13,934 Building wheel for oxdna-analysis-tools (pyproject.toml): finished with status 'done' 2022-02-09T01:37:13,953 Created wheel for oxdna-analysis-tools: filename=oxDNA_analysis_tools-1.0.14-py3-none-any.whl size=155904 sha256=924b42a78a41f83ca1508c3466e93e1867a0dcadb2d3c960af0ae1f80106484b 2022-02-09T01:37:13,954 Stored in directory: /tmp/pip-ephem-wheel-cache-atzlgm0h/wheels/99/fb/37/0326d4ced4f2f351e856bf61a1af124dba864ba92b6a0acfb1 2022-02-09T01:37:13,985 Successfully built oxdna-analysis-tools 2022-02-09T01:37:14,004 Removed build tracker: '/tmp/pip-req-tracker-df20_y8s'