2022-02-11T00:34:25,690 Created temporary directory: /tmp/pip-ephem-wheel-cache-72n9u9j2 2022-02-11T00:34:25,696 Created temporary directory: /tmp/pip-req-tracker-qpaxsyz_ 2022-02-11T00:34:25,696 Initialized build tracking at /tmp/pip-req-tracker-qpaxsyz_ 2022-02-11T00:34:25,697 Created build tracker: /tmp/pip-req-tracker-qpaxsyz_ 2022-02-11T00:34:25,697 Entered build tracker: /tmp/pip-req-tracker-qpaxsyz_ 2022-02-11T00:34:25,698 Created temporary directory: /tmp/pip-wheel-01hs2n_5 2022-02-11T00:34:25,764 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-02-11T00:34:25,770 2 location(s) to search for versions of hic-straw: 2022-02-11T00:34:25,770 * https://pypi.org/simple/hic-straw/ 2022-02-11T00:34:25,770 * https://www.piwheels.org/simple/hic-straw/ 2022-02-11T00:34:25,771 Fetching project page and analyzing links: https://pypi.org/simple/hic-straw/ 2022-02-11T00:34:25,772 Getting page https://pypi.org/simple/hic-straw/ 2022-02-11T00:34:25,775 Found index url https://pypi.org/simple 2022-02-11T00:34:25,988 Found link https://files.pythonhosted.org/packages/58/12/da9e47221a82011797d19832a2dbc8843b0a96c483874f17010b4921c993/hic-straw-0.0.6.tar.gz#sha256=bc79be50b076a3820852cd0e3b0d743df719b78d49510bf43ac63241f03ab81a (from https://pypi.org/simple/hic-straw/), version: 0.0.6 2022-02-11T00:34:25,989 Skipping link: No binaries permitted for hic-straw: https://files.pythonhosted.org/packages/a4/89/1fc2a4e6d9b5379ac4ea0add62658d519095d22a8fef6feb32d1f6d04341/hic_straw-0.0.6-py3-none-any.whl#sha256=fd355fddfb43bb7a152125200a96a959bbe2fa3e4f5e1d41d0af8f27ebecf69e (from https://pypi.org/simple/hic-straw/) 2022-02-11T00:34:25,990 Found link https://files.pythonhosted.org/packages/b4/b5/1784dd8b56f1c3242e4876a816515a453bfb302177900ba89315240e2d69/hic-straw-1.0.0.0.tar.gz#sha256=8fdf3405d344d1555be9b6bb399d13a4dc8ee267f861ab7d324635d873b7a244 (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3), version: 1.0.0.0 2022-02-11T00:34:25,991 Skipping link: No binaries permitted for hic-straw: https://files.pythonhosted.org/packages/f4/64/b77b8acee62ce4088fde83fea0b45b61ac273f676453fc551a1e2402f1df/hic_straw-1.0.0.0-cp38-cp38-macosx_10_9_x86_64.whl#sha256=5ef82d45c47d4f761528efdb91cb478e68e179cbf2d18dfb5e4f3d596e0d6307 (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3) 2022-02-11T00:34:25,998 Found link https://files.pythonhosted.org/packages/33/d1/0cb9b1ea2021664d748177878ab9aaa3d6a87e5ab96c2579cf229477baa8/hic-straw-1.0.0.1.tar.gz#sha256=f96e1e1879f1264bb3ca040e11a3f6d8d1cc7ad231d8452dd4231613eb94ddc1 (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3), version: 1.0.0.1 2022-02-11T00:34:25,999 Skipping link: No binaries permitted for hic-straw: https://files.pythonhosted.org/packages/0f/27/74d140215ca8b246971566707e35c6865dd2076d59a1dcba4b21d20aed7f/hic_straw-1.0.0.1-cp38-cp38-macosx_10_9_x86_64.whl#sha256=52282d8ca9ed91b121baf08a511bfae34548bd1f96aafb6a98c1ea4403837bf4 (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3) 2022-02-11T00:34:26,000 Found link https://files.pythonhosted.org/packages/4e/98/5e25a075010114b063044296dcca74be78b27c94deb282b661c2c55f667e/hic-straw-1.1.0.tar.gz#sha256=2403037a7a674a7b42e33cee0878b1c21100bd0634eca13ac34697aca2c843c4 (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3), version: 1.1.0 2022-02-11T00:34:26,001 Skipping link: No binaries permitted for hic-straw: https://files.pythonhosted.org/packages/ed/b6/9dd021f8ae8744255035c5eddcd68478db957480d3674ceb00abe95bc28d/hic_straw-1.1.0-cp310-cp310-macosx_10_9_x86_64.whl#sha256=1a7d7b79b46151b0ad6b07ffade0a062d526e4a33aff98a61871e409f3775e23 (from https://pypi.org/simple/hic-straw/) (requires-python:>3.3) 2022-02-11T00:34:26,001 Fetching project page and analyzing links: https://www.piwheels.org/simple/hic-straw/ 2022-02-11T00:34:26,002 Getting page https://www.piwheels.org/simple/hic-straw/ 2022-02-11T00:34:26,004 Found index url https://www.piwheels.org/simple 2022-02-11T00:34:26,261 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-0.0.6-py3-none-any.whl#sha256=fd355fddfb43bb7a152125200a96a959bbe2fa3e4f5e1d41d0af8f27ebecf69e (from https://www.piwheels.org/simple/hic-straw/) 2022-02-11T00:34:26,262 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.0-cp35-cp35m-linux_armv6l.whl#sha256=b24cdecc8100c133f9261ac5922e102b9a6a9604610045fbc3b7ab87e592b669 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2022-02-11T00:34:26,262 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.0-cp35-cp35m-linux_armv7l.whl#sha256=b24cdecc8100c133f9261ac5922e102b9a6a9604610045fbc3b7ab87e592b669 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2022-02-11T00:34:26,263 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.0-cp37-cp37m-linux_armv6l.whl#sha256=cd52040cb7e390fc7ff2e576aced504ee8675b5936b490e479327fab793a39ce (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2022-02-11T00:34:26,263 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.0-cp37-cp37m-linux_armv7l.whl#sha256=cd52040cb7e390fc7ff2e576aced504ee8675b5936b490e479327fab793a39ce (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2022-02-11T00:34:26,264 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.0-cp39-cp39-linux_armv6l.whl#sha256=63b9a8b712b0ad252026eb358d561833eba65c4c0977a99570646a02ed9351be (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2022-02-11T00:34:26,264 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.0-cp39-cp39-linux_armv7l.whl#sha256=63b9a8b712b0ad252026eb358d561833eba65c4c0977a99570646a02ed9351be (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2022-02-11T00:34:26,265 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.1-cp35-cp35m-linux_armv6l.whl#sha256=4aa0ae3fcd730523ab35a0839eb5dcd428e0606a267b5f103709447d42289b32 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2022-02-11T00:34:26,265 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.1-cp35-cp35m-linux_armv7l.whl#sha256=4aa0ae3fcd730523ab35a0839eb5dcd428e0606a267b5f103709447d42289b32 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2022-02-11T00:34:26,266 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.1-cp37-cp37m-linux_armv6l.whl#sha256=dbb1fad14d61d1428f96999f9013aaf4a1dd78ca5259eb429aebaada9ff108c2 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2022-02-11T00:34:26,266 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.1-cp37-cp37m-linux_armv7l.whl#sha256=dbb1fad14d61d1428f96999f9013aaf4a1dd78ca5259eb429aebaada9ff108c2 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2022-02-11T00:34:26,267 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.1-cp39-cp39-linux_armv6l.whl#sha256=d7d53b7818cd2a1951de14440a79520320d9cb53dcc2d58b35c105769c3393b2 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2022-02-11T00:34:26,267 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.0.0.1-cp39-cp39-linux_armv7l.whl#sha256=d7d53b7818cd2a1951de14440a79520320d9cb53dcc2d58b35c105769c3393b2 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2022-02-11T00:34:26,268 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.1.0-cp35-cp35m-linux_armv6l.whl#sha256=97994388aaa8a2f58eed70e4be30ce67b19fbf9b2c32bcd33fbe53bea71863f4 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2022-02-11T00:34:26,268 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.1.0-cp35-cp35m-linux_armv7l.whl#sha256=97994388aaa8a2f58eed70e4be30ce67b19fbf9b2c32bcd33fbe53bea71863f4 (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2022-02-11T00:34:26,269 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.1.0-cp37-cp37m-linux_armv6l.whl#sha256=071e6c31e8ad157969fbca812d327a246df45e9cf813889e24346ab1af0625aa (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2022-02-11T00:34:26,269 Skipping link: No binaries permitted for hic-straw: https://www.piwheels.org/simple/hic-straw/hic_straw-1.1.0-cp37-cp37m-linux_armv7l.whl#sha256=071e6c31e8ad157969fbca812d327a246df45e9cf813889e24346ab1af0625aa (from https://www.piwheels.org/simple/hic-straw/) (requires-python:>3.3) 2022-02-11T00:34:26,270 Skipping link: not a file: https://www.piwheels.org/simple/hic-straw/ 2022-02-11T00:34:26,271 Skipping link: not a file: https://pypi.org/simple/hic-straw/ 2022-02-11T00:34:26,316 Given no hashes to check 1 links for project 'hic-straw': discarding no candidates 2022-02-11T00:34:26,357 Collecting hic-straw==1.1.0 2022-02-11T00:34:26,360 Created temporary directory: /tmp/pip-unpack-3z9zkv5h 2022-02-11T00:34:26,454 Downloading hic-straw-1.1.0.tar.gz (16 kB) 2022-02-11T00:34:26,533 Added hic-straw==1.1.0 from https://files.pythonhosted.org/packages/4e/98/5e25a075010114b063044296dcca74be78b27c94deb282b661c2c55f667e/hic-straw-1.1.0.tar.gz#sha256=2403037a7a674a7b42e33cee0878b1c21100bd0634eca13ac34697aca2c843c4 to build tracker '/tmp/pip-req-tracker-qpaxsyz_' 2022-02-11T00:34:26,535 Running setup.py (path:/tmp/pip-wheel-01hs2n_5/hic-straw_ee45dbc0900c4955947e9f49c62b661e/setup.py) egg_info for package hic-straw 2022-02-11T00:34:26,536 Created temporary directory: /tmp/pip-pip-egg-info-hcp6nc82 2022-02-11T00:34:26,537 Preparing metadata (setup.py): started 2022-02-11T00:34:26,537 Running command python setup.py egg_info 2022-02-11T00:34:28,667 /usr/local/lib/python3.9/dist-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. 2022-02-11T00:34:28,669 warnings.warn( 2022-02-11T00:34:33,514 running egg_info 2022-02-11T00:34:33,521 creating /tmp/pip-pip-egg-info-hcp6nc82/hic_straw.egg-info 2022-02-11T00:34:33,537 writing manifest file '/tmp/pip-pip-egg-info-hcp6nc82/hic_straw.egg-info/SOURCES.txt' 2022-02-11T00:34:33,566 writing manifest file '/tmp/pip-pip-egg-info-hcp6nc82/hic_straw.egg-info/SOURCES.txt' 2022-02-11T00:34:33,718 Preparing metadata (setup.py): finished with status 'done' 2022-02-11T00:34:33,727 Source in /tmp/pip-wheel-01hs2n_5/hic-straw_ee45dbc0900c4955947e9f49c62b661e has version 1.1.0, which satisfies requirement hic-straw==1.1.0 from https://files.pythonhosted.org/packages/4e/98/5e25a075010114b063044296dcca74be78b27c94deb282b661c2c55f667e/hic-straw-1.1.0.tar.gz#sha256=2403037a7a674a7b42e33cee0878b1c21100bd0634eca13ac34697aca2c843c4 2022-02-11T00:34:33,729 Removed hic-straw==1.1.0 from https://files.pythonhosted.org/packages/4e/98/5e25a075010114b063044296dcca74be78b27c94deb282b661c2c55f667e/hic-straw-1.1.0.tar.gz#sha256=2403037a7a674a7b42e33cee0878b1c21100bd0634eca13ac34697aca2c843c4 from build tracker '/tmp/pip-req-tracker-qpaxsyz_' 2022-02-11T00:34:33,742 Created temporary directory: /tmp/pip-unpack-qqr7nlk2 2022-02-11T00:34:33,743 Building wheels for collected packages: hic-straw 2022-02-11T00:34:33,751 Created temporary directory: /tmp/pip-wheel-owiddh8n 2022-02-11T00:34:33,752 Building wheel for hic-straw (setup.py): started 2022-02-11T00:34:33,752 Destination directory: /tmp/pip-wheel-owiddh8n 2022-02-11T00:34:33,753 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-01hs2n_5/hic-straw_ee45dbc0900c4955947e9f49c62b661e/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-01hs2n_5/hic-straw_ee45dbc0900c4955947e9f49c62b661e/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-owiddh8n 2022-02-11T00:34:35,814 /usr/local/lib/python3.9/dist-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. 2022-02-11T00:34:35,816 warnings.warn( 2022-02-11T00:34:36,381 running bdist_wheel 2022-02-11T00:34:36,390 running build 2022-02-11T00:34:36,391 running build_ext 2022-02-11T00:34:36,405 creating tmp 2022-02-11T00:34:36,406 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c /tmp/tmpi0f5wlne.cpp -o tmp/tmpi0f5wlne.o -std=c++14 2022-02-11T00:34:36,585 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c /tmp/tmp2z069pc9.cpp -o tmp/tmp2z069pc9.o -fvisibility=hidden 2022-02-11T00:34:36,779 creating build 2022-02-11T00:34:36,780 creating build/temp.linux-armv7l-3.9 2022-02-11T00:34:36,781 creating build/temp.linux-armv7l-3.9/src 2022-02-11T00:34:36,783 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-01hs2n_5/hic-straw_ee45dbc0900c4955947e9f49c62b661e/.eggs/pybind11-2.9.1-py3.9.egg/pybind11/include -I/tmp/pip-wheel-01hs2n_5/hic-straw_ee45dbc0900c4955947e9f49c62b661e/.eggs/pybind11-2.9.1-py3.9.egg/pybind11/include -I/usr/include/python3.9 -c src/straw.cpp -o build/temp.linux-armv7l-3.9/src/straw.o -DVERSION_INFO=\"1.1.0\" -std=c++14 -fvisibility=hidden 2022-02-11T00:34:46,361 src/straw.cpp: In function ‘bool readFooter(std::istream&, int64_t, int32_t, int32_t, int32_t, const string&, const string&, const string&, int32_t, int64_t&, indexEntry&, indexEntry&, std::vector&)’: 2022-02-11T00:34:46,362 src/straw.cpp:388:17: warning: unused variable ‘nBytes’ [-Wunused-variable] 2022-02-11T00:34:46,363 388 | int64_t nBytes = readInt64FromFile(fin); 2022-02-11T00:34:46,363 | ^~~~~~ 2022-02-11T00:34:46,363 src/straw.cpp:390:17: warning: unused variable ‘nBytes’ [-Wunused-variable] 2022-02-11T00:34:46,364 390 | int32_t nBytes = readInt32FromFile(fin); 2022-02-11T00:34:46,364 | ^~~~~~ 2022-02-11T00:34:46,369 src/straw.cpp:403:17: warning: unused variable ‘sizeinbytes’ [-Wunused-variable] 2022-02-11T00:34:46,370 403 | int32_t sizeinbytes = readInt32FromFile(fin); 2022-02-11T00:34:46,370 | ^~~~~~~~~~~ 2022-02-11T00:34:46,506 src/straw.cpp: In function ‘std::map readMatrixHttp(CURL*, int64_t, const string&, int32_t, float&, int32_t&, int32_t&)’: 2022-02-11T00:34:46,507 src/straw.cpp:606:13: warning: unused variable ‘c1’ [-Wunused-variable] 2022-02-11T00:34:46,507 606 | int32_t c1 = readInt32FromFile(bufin); 2022-02-11T00:34:46,507 | ^~ 2022-02-11T00:34:46,508 src/straw.cpp:607:13: warning: unused variable ‘c2’ [-Wunused-variable] 2022-02-11T00:34:46,508 607 | int32_t c2 = readInt32FromFile(bufin); 2022-02-11T00:34:46,509 | ^~ 2022-02-11T00:34:46,510 src/straw.cpp: In function ‘std::map readMatrix(std::istream&, int64_t, const string&, int32_t, float&, int32_t&, int32_t&)’: 2022-02-11T00:34:46,511 src/straw.cpp:634:13: warning: unused variable ‘c1’ [-Wunused-variable] 2022-02-11T00:34:46,511 634 | int32_t c1 = readInt32FromFile(fin); 2022-02-11T00:34:46,512 | ^~ 2022-02-11T00:34:46,512 src/straw.cpp:635:13: warning: unused variable ‘c2’ [-Wunused-variable] 2022-02-11T00:34:46,512 635 | int32_t c2 = readInt32FromFile(fin); 2022-02-11T00:34:46,513 | ^~ 2022-02-11T00:35:10,505 In file included from /usr/include/c++/10/bits/stl_algo.h:61, 2022-02-11T00:35:10,505 from /usr/include/c++/10/algorithm:62, 2022-02-11T00:35:10,506 from src/straw.cpp:36: 2022-02-11T00:35:10,506 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2022-02-11T00:35:10,506 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-02-11T00:35:10,507 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2022-02-11T00:35:10,507 | ^~~~~~~~~~~~~ 2022-02-11T00:35:21,570 In file included from /usr/include/c++/10/vector:72, 2022-02-11T00:35:21,571 from src/straw.cpp:32: 2022-02-11T00:35:21,571 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2022-02-11T00:35:21,571 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-02-11T00:35:21,572 426 | vector<_Tp, _Alloc>:: 2022-02-11T00:35:21,572 | ^~~~~~~~~~~~~~~~~~~ 2022-02-11T00:35:21,653 In file included from /usr/include/c++/10/vector:67, 2022-02-11T00:35:21,653 from src/straw.cpp:32: 2022-02-11T00:35:21,654 /usr/include/c++/10/bits/stl_vector.h: In function ‘void populateVectorWithFloats(std::istream&, std::vector&, int64_t)’: 2022-02-11T00:35:21,654 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-02-11T00:35:21,654 1198 | _M_realloc_insert(end(), __x); 2022-02-11T00:35:21,655 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-02-11T00:35:21,700 /usr/include/c++/10/bits/stl_vector.h: In function ‘void populateVectorWithDoubles(std::istream&, std::vector&, int64_t)’: 2022-02-11T00:35:21,701 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-02-11T00:35:21,701 1198 | _M_realloc_insert(end(), __x); 2022-02-11T00:35:21,701 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-02-11T00:35:21,753 /usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector sliceVector(std::vector&, int64_t, int64_t)’: 2022-02-11T00:35:21,753 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-02-11T00:35:21,753 1198 | _M_realloc_insert(end(), __x); 2022-02-11T00:35:21,754 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-02-11T00:35:23,882 In file included from /usr/include/c++/10/vector:72, 2022-02-11T00:35:23,883 from src/straw.cpp:32: 2022-02-11T00:35:23,883 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2022-02-11T00:35:23,884 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-02-11T00:35:23,884 426 | vector<_Tp, _Alloc>:: 2022-02-11T00:35:23,884 | ^~~~~~~~~~~~~~~~~~~ 2022-02-11T00:35:23,885 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-02-11T00:35:23,984 In file included from /usr/include/c++/10/vector:67, 2022-02-11T00:35:23,984 from src/straw.cpp:32: 2022-02-11T00:35:23,984 /usr/include/c++/10/bits/stl_vector.h: In function ‘void rollingMedian(std::vector&, std::vector&, int32_t)’: 2022-02-11T00:35:23,985 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-02-11T00:35:23,985 1198 | _M_realloc_insert(end(), __x); 2022-02-11T00:35:23,985 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-02-11T00:35:23,986 In file included from /usr/include/c++/10/vector:72, 2022-02-11T00:35:23,986 from src/straw.cpp:32: 2022-02-11T00:35:23,986 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-02-11T00:35:23,987 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-02-11T00:35:23,987 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-02-11T00:35:25,313 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {chromosome}; _Tp = chromosome; _Alloc = std::allocator]’: 2022-02-11T00:35:25,314 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-02-11T00:35:25,314 426 | vector<_Tp, _Alloc>:: 2022-02-11T00:35:25,315 | ^~~~~~~~~~~~~~~~~~~ 2022-02-11T00:35:25,315 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-02-11T00:35:25,528 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector HiCFile::getChromosomes()’: 2022-02-11T00:35:25,528 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-02-11T00:35:25,529 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-02-11T00:35:25,529 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-02-11T00:35:26,297 In file included from /usr/include/c++/10/map:60, 2022-02-11T00:35:26,298 from src/straw.cpp:28: 2022-02-11T00:35:26,298 /usr/include/c++/10/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, chromosome>; _KeyOfValue = std::_Select1st, chromosome> >; _Compare = std::less >; _Alloc = std::allocator, chromosome> >]’: 2022-02-11T00:35:26,298 /usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2022-02-11T00:35:26,299 2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2022-02-11T00:35:26,299 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-02-11T00:35:26,459 /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, chromosome>; _KeyOfValue = std::_Select1st, chromosome> >; _Compare = std::less >; _Alloc = std::allocator, chromosome> >]’: 2022-02-11T00:35:26,460 /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2022-02-11T00:35:26,460 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2022-02-11T00:35:26,460 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-02-11T00:35:26,461 /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2022-02-11T00:35:26,718 In file included from /usr/include/c++/10/map:61, 2022-02-11T00:35:26,718 from src/straw.cpp:28: 2022-02-11T00:35:26,718 /usr/include/c++/10/bits/stl_map.h: In function ‘void parsePositions(const string&, std::string&, int64_t&, int64_t&, std::map, chromosome>)’: 2022-02-11T00:35:26,719 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2022-02-11T00:35:26,719 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2022-02-11T00:35:26,720 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-02-11T00:35:26,720 502 | std::tuple(__k), 2022-02-11T00:35:26,720 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-02-11T00:35:26,721 503 | std::tuple<>()); 2022-02-11T00:35:26,721 | ~~~~~~~~~~~~~~~ 2022-02-11T00:35:27,156 /usr/include/c++/10/bits/stl_map.h: In function ‘std::map, chromosome> readHeader(std::istream&, int64_t&, std::string&, int32_t&, int32_t&, int64_t&, int64_t&)’: 2022-02-11T00:35:27,156 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2022-02-11T00:35:27,157 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2022-02-11T00:35:27,157 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-02-11T00:35:27,157 502 | std::tuple(__k), 2022-02-11T00:35:27,158 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-02-11T00:35:27,158 503 | std::tuple<>()); 2022-02-11T00:35:27,158 | ~~~~~~~~~~~~~~~ 2022-02-11T00:35:28,130 In file included from /usr/include/c++/10/map:60, 2022-02-11T00:35:28,131 from src/straw.cpp:28: 2022-02-11T00:35:28,131 /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: 2022-02-11T00:35:28,131 /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2022-02-11T00:35:28,132 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2022-02-11T00:35:28,132 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-02-11T00:35:28,336 In file included from /usr/include/c++/10/map:61, 2022-02-11T00:35:28,337 from src/straw.cpp:28: 2022-02-11T00:35:28,337 /usr/include/c++/10/bits/stl_map.h: In member function ‘std::vector MatrixZoomData::getRecords(int64_t, int64_t, int64_t, int64_t)’: 2022-02-11T00:35:28,337 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2022-02-11T00:35:28,338 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2022-02-11T00:35:28,338 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-02-11T00:35:28,339 502 | std::tuple(__k), 2022-02-11T00:35:28,339 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-02-11T00:35:28,339 503 | std::tuple<>()); 2022-02-11T00:35:28,340 | ~~~~~~~~~~~~~~~ 2022-02-11T00:35:29,300 /usr/include/c++/10/bits/stl_map.h: In function ‘void populateBlockMap(std::istream&, int32_t, std::map&)’: 2022-02-11T00:35:29,301 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2022-02-11T00:35:29,301 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2022-02-11T00:35:29,301 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-02-11T00:35:29,302 502 | std::tuple(__k), 2022-02-11T00:35:29,302 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-02-11T00:35:29,302 503 | std::tuple<>()); 2022-02-11T00:35:29,303 | ~~~~~~~~~~~~~~~ 2022-02-11T00:35:30,899 /usr/include/c++/10/bits/stl_map.h: In member function ‘MatrixZoomData* HiCFile::getMatrixZoomData(const string&, const string&, const string&, const string&, const string&, int32_t)’: 2022-02-11T00:35:30,899 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2022-02-11T00:35:30,900 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2022-02-11T00:35:30,900 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-02-11T00:35:30,901 502 | std::tuple(__k), 2022-02-11T00:35:30,901 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-02-11T00:35:30,901 503 | std::tuple<>()); 2022-02-11T00:35:30,902 | ~~~~~~~~~~~~~~~ 2022-02-11T00:35:30,902 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2022-02-11T00:35:30,902 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2022-02-11T00:35:30,903 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-02-11T00:35:30,903 502 | std::tuple(__k), 2022-02-11T00:35:30,903 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-02-11T00:35:30,903 503 | std::tuple<>()); 2022-02-11T00:35:30,904 | ~~~~~~~~~~~~~~~ 2022-02-11T00:35:31,239 /usr/include/c++/10/bits/stl_map.h: In function ‘std::vector straw(const string&, const string&, const string&, const string&, const string&, const string&, int32_t)’: 2022-02-11T00:35:31,239 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2022-02-11T00:35:31,240 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2022-02-11T00:35:31,240 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-02-11T00:35:31,240 502 | std::tuple(__k), 2022-02-11T00:35:31,241 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-02-11T00:35:31,241 503 | std::tuple<>()); 2022-02-11T00:35:31,241 | ~~~~~~~~~~~~~~~ 2022-02-11T00:35:31,249 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, chromosome>, std::_Select1st, chromosome> >, std::less >, std::allocator, chromosome> > >::const_iterator’ changed in GCC 7.1 2022-02-11T00:35:31,249 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2022-02-11T00:35:31,250 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-02-11T00:35:31,250 502 | std::tuple(__k), 2022-02-11T00:35:31,250 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-02-11T00:35:31,251 503 | std::tuple<>()); 2022-02-11T00:35:31,251 | ~~~~~~~~~~~~~~~ 2022-02-11T00:36:08,272 creating build/lib.linux-armv7l-3.9 2022-02-11T00:36:08,273 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/src/straw.o -L/usr/lib -o build/lib.linux-armv7l-3.9/hicstraw.cpython-39-arm-linux-gnueabihf.so -lcurl -lz 2022-02-11T00:36:09,699 /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-02-11T00:36:09,700 warnings.warn( 2022-02-11T00:36:09,704 running install 2022-02-11T00:36:09,767 running install_lib 2022-02-11T00:36:09,774 creating build/bdist.linux-armv7l 2022-02-11T00:36:09,774 creating build/bdist.linux-armv7l/wheel 2022-02-11T00:36:09,966 running install_egg_info 2022-02-11T00:36:09,989 running egg_info 2022-02-11T00:36:10,021 writing manifest file 'hic_straw.egg-info/SOURCES.txt' 2022-02-11T00:36:10,024 Copying hic_straw.egg-info to build/bdist.linux-armv7l/wheel/hic_straw-1.1.0-py3.9.egg-info 2022-02-11T00:36:10,048 running install_scripts 2022-02-11T00:36:12,287 Building wheel for hic-straw (setup.py): finished with status 'done' 2022-02-11T00:36:12,336 Created wheel for hic-straw: filename=hic_straw-1.1.0-cp39-cp39-linux_armv7l.whl size=1437331 sha256=0eacf81b7657d3d11dffce499da4a15512e9a211db9b692ff93d5242e82ee321 2022-02-11T00:36:12,337 Stored in directory: /tmp/pip-ephem-wheel-cache-72n9u9j2/wheels/44/fb/75/26f98c789cb1d7b22c12f1b44bf6a4190c7bd1175112dd06e8 2022-02-11T00:36:12,359 Successfully built hic-straw 2022-02-11T00:36:12,461 Removed build tracker: '/tmp/pip-req-tracker-qpaxsyz_'