2022-02-11T08:33:08,621 Created temporary directory: /tmp/pip-ephem-wheel-cache-dcykpkgu
2022-02-11T08:33:08,626 Created temporary directory: /tmp/pip-req-tracker-e5j0kqr5
2022-02-11T08:33:08,627 Initialized build tracking at /tmp/pip-req-tracker-e5j0kqr5
2022-02-11T08:33:08,627 Created build tracker: /tmp/pip-req-tracker-e5j0kqr5
2022-02-11T08:33:08,628 Entered build tracker: /tmp/pip-req-tracker-e5j0kqr5
2022-02-11T08:33:08,629 Created temporary directory: /tmp/pip-wheel-iqlf3l1p
2022-02-11T08:33:08,695 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-02-11T08:33:08,701 2 location(s) to search for versions of capice:
2022-02-11T08:33:08,701 * https://pypi.org/simple/capice/
2022-02-11T08:33:08,701 * https://www.piwheels.org/simple/capice/
2022-02-11T08:33:08,702 Fetching project page and analyzing links: https://pypi.org/simple/capice/
2022-02-11T08:33:08,703 Getting page https://pypi.org/simple/capice/
2022-02-11T08:33:08,706 Found index url https://pypi.org/simple
2022-02-11T08:33:08,926   Found link https://files.pythonhosted.org/packages/2b/cf/eeb11d53ea46d9463d108113249f8a5b8c3023b3822835fd2579c3351924/capice-3.0.0rc0.tar.gz#sha256=580f1298bafd091d86b5ded841588032f72e40035de04a7ec5fc1516c9edc2b2 (from https://pypi.org/simple/capice/) (requires-python:>=3.7), version: 3.0.0rc0
2022-02-11T08:33:08,927   Found link https://files.pythonhosted.org/packages/c9/09/fdf73572fc6b25f60b4a5b2729454b1560abff6dd9f7907f45d86bd0ec88/capice-3.0.0rc1.tar.gz#sha256=b5eb8501028078b58b078728cb5927d30f736dec35d8d17784807fb18bece558 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc1
2022-02-11T08:33:08,928   Found link https://files.pythonhosted.org/packages/93/94/a86e20a50a6ae585d21896e5348b2ee157c3a7f49a22e53a014884d069d1/capice-3.0.0rc2.tar.gz#sha256=fd1c7a04ef0b10576b9843cecc7a188c20ae39edb4ed4a8fec27c8abc13d23f4 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc2
2022-02-11T08:33:08,930   Found link https://files.pythonhosted.org/packages/09/dc/8e44c3e88c1ee6402c17fb3c06b4e56d7580e55dd384f3c6f5c0c9f539ef/capice-3.0.0rc3.tar.gz#sha256=331d26cc87603dd46c81b0d670c6c27566c204ef5f68a150de9dced4d4d46018 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc3
2022-02-11T08:33:08,931 Fetching project page and analyzing links: https://www.piwheels.org/simple/capice/
2022-02-11T08:33:08,931 Getting page https://www.piwheels.org/simple/capice/
2022-02-11T08:33:08,939 Found index url https://www.piwheels.org/simple
2022-02-11T08:33:09,154   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc0-py3-none-any.whl#sha256=db7e870e65a264aa8b90e67c7ad2b62ed2662d850fac021fe20eafa759ccd21a (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.7)
2022-02-11T08:33:09,155   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc1-py3-none-any.whl#sha256=1f1a3830a436ef9f9f34370a93dea81e04b8e4761fd8ecae8ce10955c1dddac2 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-02-11T08:33:09,155   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc2-py3-none-any.whl#sha256=f67afcd30fc1b242beb1b3631528be28745036179d8f8ff75fdd07d13c163206 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-02-11T08:33:09,156 Skipping link: not a file: https://www.piwheels.org/simple/capice/
2022-02-11T08:33:09,157 Skipping link: not a file: https://pypi.org/simple/capice/
2022-02-11T08:33:09,201 Given no hashes to check 1 links for project 'capice': discarding no candidates
2022-02-11T08:33:09,243 Collecting capice==3.0.0rc3
2022-02-11T08:33:09,246   Created temporary directory: /tmp/pip-unpack-d7b8h30c
2022-02-11T08:33:09,521   Downloading capice-3.0.0rc3.tar.gz (33 kB)
2022-02-11T08:33:09,791   Added capice==3.0.0rc3 from https://files.pythonhosted.org/packages/09/dc/8e44c3e88c1ee6402c17fb3c06b4e56d7580e55dd384f3c6f5c0c9f539ef/capice-3.0.0rc3.tar.gz#sha256=331d26cc87603dd46c81b0d670c6c27566c204ef5f68a150de9dced4d4d46018 to build tracker '/tmp/pip-req-tracker-e5j0kqr5'
2022-02-11T08:33:09,792   Running setup.py (path:/tmp/pip-wheel-iqlf3l1p/capice_40441d1699e747a98f343f7239098b7d/setup.py) egg_info for package capice
2022-02-11T08:33:09,794   Created temporary directory: /tmp/pip-pip-egg-info-e01srbs7
2022-02-11T08:33:09,794   Preparing metadata (setup.py): started
2022-02-11T08:33:09,795   Running command python setup.py egg_info
2022-02-11T08:33:11,699   running egg_info
2022-02-11T08:33:11,703   creating /tmp/pip-pip-egg-info-e01srbs7/capice.egg-info
2022-02-11T08:33:11,718   writing manifest file '/tmp/pip-pip-egg-info-e01srbs7/capice.egg-info/SOURCES.txt'
2022-02-11T08:33:11,732   package init file 'src/molgenis/__init__.py' not found (or not a regular file)
2022-02-11T08:33:11,760   writing manifest file '/tmp/pip-pip-egg-info-e01srbs7/capice.egg-info/SOURCES.txt'
2022-02-11T08:33:11,879   Preparing metadata (setup.py): finished with status 'done'
2022-02-11T08:33:11,889   Source in /tmp/pip-wheel-iqlf3l1p/capice_40441d1699e747a98f343f7239098b7d has version 3.0.0rc3, which satisfies requirement capice==3.0.0rc3 from https://files.pythonhosted.org/packages/09/dc/8e44c3e88c1ee6402c17fb3c06b4e56d7580e55dd384f3c6f5c0c9f539ef/capice-3.0.0rc3.tar.gz#sha256=331d26cc87603dd46c81b0d670c6c27566c204ef5f68a150de9dced4d4d46018
2022-02-11T08:33:11,891   Removed capice==3.0.0rc3 from https://files.pythonhosted.org/packages/09/dc/8e44c3e88c1ee6402c17fb3c06b4e56d7580e55dd384f3c6f5c0c9f539ef/capice-3.0.0rc3.tar.gz#sha256=331d26cc87603dd46c81b0d670c6c27566c204ef5f68a150de9dced4d4d46018 from build tracker '/tmp/pip-req-tracker-e5j0kqr5'
2022-02-11T08:33:11,905 Created temporary directory: /tmp/pip-unpack-7jnkxgjb
2022-02-11T08:33:11,906 Building wheels for collected packages: capice
2022-02-11T08:33:11,914   Created temporary directory: /tmp/pip-wheel-d_hse4_7
2022-02-11T08:33:11,915   Building wheel for capice (setup.py): started
2022-02-11T08:33:11,915   Destination directory: /tmp/pip-wheel-d_hse4_7
2022-02-11T08:33:11,916   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-iqlf3l1p/capice_40441d1699e747a98f343f7239098b7d/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-iqlf3l1p/capice_40441d1699e747a98f343f7239098b7d/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-d_hse4_7
2022-02-11T08:33:13,867   running bdist_wheel
2022-02-11T08:33:14,268   running build
2022-02-11T08:33:14,268   running build_py
2022-02-11T08:33:14,273   package init file 'src/molgenis/__init__.py' not found (or not a regular file)
2022-02-11T08:33:14,278   creating build
2022-02-11T08:33:14,278   creating build/lib
2022-02-11T08:33:14,279   creating build/lib/molgenis
2022-02-11T08:33:14,280   creating build/lib/molgenis/capice
2022-02-11T08:33:14,282   copying src/molgenis/capice/main_train.py -> build/lib/molgenis/capice
2022-02-11T08:33:14,286   copying src/molgenis/capice/__version__.py -> build/lib/molgenis/capice
2022-02-11T08:33:14,289   copying src/molgenis/capice/main_capice.py -> build/lib/molgenis/capice
2022-02-11T08:33:14,293   copying src/molgenis/capice/__init__.py -> build/lib/molgenis/capice
2022-02-11T08:33:14,295   copying src/molgenis/capice/capice.py -> build/lib/molgenis/capice
2022-02-11T08:33:14,298   copying src/molgenis/capice/main_predict.py -> build/lib/molgenis/capice
2022-02-11T08:33:14,305   creating build/lib/molgenis/capice/vep
2022-02-11T08:33:14,306   copying src/molgenis/capice/vep/poly_phen.py -> build/lib/molgenis/capice/vep
2022-02-11T08:33:14,314   copying src/molgenis/capice/vep/template_sift_polyphen.py -> build/lib/molgenis/capice/vep
2022-02-11T08:33:14,317   copying src/molgenis/capice/vep/seq.py -> build/lib/molgenis/capice/vep
2022-02-11T08:33:14,320   copying src/molgenis/capice/vep/amino_acids.py -> build/lib/molgenis/capice/vep
2022-02-11T08:33:14,323   copying src/molgenis/capice/vep/cdna_position.py -> build/lib/molgenis/capice/vep
2022-02-11T08:33:14,327   copying src/molgenis/capice/vep/domain.py -> build/lib/molgenis/capice/vep
2022-02-11T08:33:14,330   copying src/molgenis/capice/vep/motif_ehi_pos.py -> build/lib/molgenis/capice/vep
2022-02-11T08:33:14,333   copying src/molgenis/capice/vep/motif_e_score_change.py -> build/lib/molgenis/capice/vep
2022-02-11T08:33:14,336   copying src/molgenis/capice/vep/motif_name.py -> build/lib/molgenis/capice/vep
2022-02-11T08:33:14,339   copying src/molgenis/capice/vep/template_position.py -> build/lib/molgenis/capice/vep
2022-02-11T08:33:14,342   copying src/molgenis/capice/vep/__init__.py -> build/lib/molgenis/capice/vep
2022-02-11T08:33:14,345   copying src/molgenis/capice/vep/length.py -> build/lib/molgenis/capice/vep
2022-02-11T08:33:14,349   copying src/molgenis/capice/vep/cds_position.py -> build/lib/molgenis/capice/vep
2022-02-11T08:33:14,352   copying src/molgenis/capice/vep/sift.py -> build/lib/molgenis/capice/vep
2022-02-11T08:33:14,355   copying src/molgenis/capice/vep/type.py -> build/lib/molgenis/capice/vep
2022-02-11T08:33:14,358   copying src/molgenis/capice/vep/cons_detail.py -> build/lib/molgenis/capice/vep
2022-02-11T08:33:14,362   copying src/molgenis/capice/vep/consequence.py -> build/lib/molgenis/capice/vep
2022-02-11T08:33:14,365   copying src/molgenis/capice/vep/template.py -> build/lib/molgenis/capice/vep
2022-02-11T08:33:14,368   copying src/molgenis/capice/vep/protein_position.py -> build/lib/molgenis/capice/vep
2022-02-11T08:33:14,374   creating build/lib/molgenis/capice/utilities
2022-02-11T08:33:14,375   copying src/molgenis/capice/utilities/enums.py -> build/lib/molgenis/capice/utilities
2022-02-11T08:33:14,379   copying src/molgenis/capice/utilities/capice_imputing.py -> build/lib/molgenis/capice/utilities
2022-02-11T08:33:14,382   copying src/molgenis/capice/utilities/load_file_postprocessor.py -> build/lib/molgenis/capice/utilities
2022-02-11T08:33:14,386   copying src/molgenis/capice/utilities/manual_vep_processor.py -> build/lib/molgenis/capice/utilities
2022-02-11T08:33:14,389   copying src/molgenis/capice/utilities/__init__.py -> build/lib/molgenis/capice/utilities
2022-02-11T08:33:14,392   copying src/molgenis/capice/utilities/input_parser.py -> build/lib/molgenis/capice/utilities
2022-02-11T08:33:14,395   copying src/molgenis/capice/utilities/preprocessor.py -> build/lib/molgenis/capice/utilities
2022-02-11T08:33:14,399   copying src/molgenis/capice/utilities/input_processor.py -> build/lib/molgenis/capice/utilities
2022-02-11T08:33:14,403   copying src/molgenis/capice/utilities/class_suggestor.py -> build/lib/molgenis/capice/utilities
2022-02-11T08:33:14,406   copying src/molgenis/capice/utilities/dynamic_loader.py -> build/lib/molgenis/capice/utilities
2022-02-11T08:33:14,410   copying src/molgenis/capice/utilities/custom_logging_filter.py -> build/lib/molgenis/capice/utilities
2022-02-11T08:33:14,413   copying src/molgenis/capice/utilities/predictor.py -> build/lib/molgenis/capice/utilities
2022-02-11T08:33:14,418   creating build/lib/molgenis/capice/validators
2022-02-11T08:33:14,419   copying src/molgenis/capice/validators/post_file_parse_validator.py -> build/lib/molgenis/capice/validators
2022-02-11T08:33:14,423   copying src/molgenis/capice/validators/__init__.py -> build/lib/molgenis/capice/validators
2022-02-11T08:33:14,425   copying src/molgenis/capice/validators/property_type_validator.py -> build/lib/molgenis/capice/validators
2022-02-11T08:33:14,429   copying src/molgenis/capice/validators/input_validator.py -> build/lib/molgenis/capice/validators
2022-02-11T08:33:14,432   copying src/molgenis/capice/validators/post_vep_processing_validator.py -> build/lib/molgenis/capice/validators
2022-02-11T08:33:14,436   creating build/lib/molgenis/capice/cli
2022-02-11T08:33:14,438   copying src/molgenis/capice/cli/args_handler_train.py -> build/lib/molgenis/capice/cli
2022-02-11T08:33:14,441   copying src/molgenis/capice/cli/__init__.py -> build/lib/molgenis/capice/cli
2022-02-11T08:33:14,444   copying src/molgenis/capice/cli/args_handler_predict.py -> build/lib/molgenis/capice/cli
2022-02-11T08:33:14,447   copying src/molgenis/capice/cli/args_handler_parent.py -> build/lib/molgenis/capice/cli
2022-02-11T08:33:14,452   creating build/lib/molgenis/capice/core
2022-02-11T08:33:14,454   copying src/molgenis/capice/core/logger.py -> build/lib/molgenis/capice/core
2022-02-11T08:33:14,458   copying src/molgenis/capice/core/capice_manager.py -> build/lib/molgenis/capice/core
2022-02-11T08:33:14,461   copying src/molgenis/capice/core/__init__.py -> build/lib/molgenis/capice/core
2022-02-11T08:33:14,464   copying src/molgenis/capice/core/args_handler.py -> build/lib/molgenis/capice/core
2022-02-11T08:33:14,467   copying src/molgenis/capice/core/capice_exporter.py -> build/lib/molgenis/capice/core
2022-02-11T08:33:14,496   /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-02-11T08:33:14,496     warnings.warn(
2022-02-11T08:33:14,501   running install
2022-02-11T08:33:14,563   running install_lib
2022-02-11T08:33:14,570   creating build/bdist.linux-armv7l
2022-02-11T08:33:14,570   creating build/bdist.linux-armv7l/wheel
2022-02-11T08:33:14,573   creating build/bdist.linux-armv7l/wheel/molgenis
2022-02-11T08:33:14,576   creating build/bdist.linux-armv7l/wheel/molgenis/capice
2022-02-11T08:33:14,584   creating build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-02-11T08:33:14,643   creating build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-02-11T08:33:14,685   creating build/bdist.linux-armv7l/wheel/molgenis/capice/validators
2022-02-11T08:33:14,708   creating build/bdist.linux-armv7l/wheel/molgenis/capice/cli
2022-02-11T08:33:14,728   creating build/bdist.linux-armv7l/wheel/molgenis/capice/core
2022-02-11T08:33:14,744   running install_egg_info
2022-02-11T08:33:14,784   running egg_info
2022-02-11T08:33:14,833   writing manifest file 'src/capice.egg-info/SOURCES.txt'
2022-02-11T08:33:14,835   Copying src/capice.egg-info to build/bdist.linux-armv7l/wheel/capice-3.0.0rc3-py3.9.egg-info
2022-02-11T08:33:14,859   running install_scripts
2022-02-11T08:33:15,395   Building wheel for capice (setup.py): finished with status 'done'
2022-02-11T08:33:15,400   Created wheel for capice: filename=capice-3.0.0rc3-py3-none-any.whl size=50199 sha256=4ee7f781a7a6edacfb38af661fab250bdb707a6f63b57c56612ff132ceb55c74
2022-02-11T08:33:15,401   Stored in directory: /tmp/pip-ephem-wheel-cache-dcykpkgu/wheels/f1/2e/3c/3efd1b365059ec4ce50c5b0d3fca7f3c93287bbbca87afe8d4
2022-02-11T08:33:15,430 Successfully built capice
2022-02-11T08:33:15,438 Removed build tracker: '/tmp/pip-req-tracker-e5j0kqr5'