2022-02-11T11:04:42,204 Created temporary directory: /tmp/pip-ephem-wheel-cache-c_vvlkis
2022-02-11T11:04:42,210 Created temporary directory: /tmp/pip-req-tracker-2x7pmzzy
2022-02-11T11:04:42,211 Initialized build tracking at /tmp/pip-req-tracker-2x7pmzzy
2022-02-11T11:04:42,212 Created build tracker: /tmp/pip-req-tracker-2x7pmzzy
2022-02-11T11:04:42,212 Entered build tracker: /tmp/pip-req-tracker-2x7pmzzy
2022-02-11T11:04:42,213 Created temporary directory: /tmp/pip-wheel-w5bk63_4
2022-02-11T11:04:42,285 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-02-11T11:04:42,288 2 location(s) to search for versions of ont-bonito-cuda111:
2022-02-11T11:04:42,288 * https://pypi.org/simple/ont-bonito-cuda111/
2022-02-11T11:04:42,288 * https://www.piwheels.org/simple/ont-bonito-cuda111/
2022-02-11T11:04:42,289 Fetching project page and analyzing links: https://pypi.org/simple/ont-bonito-cuda111/
2022-02-11T11:04:42,291 Getting page https://pypi.org/simple/ont-bonito-cuda111/
2022-02-11T11:04:42,296 Found index url https://pypi.org/simple
2022-02-11T11:04:42,628   Found link https://files.pythonhosted.org/packages/4b/e9/326d358ab1d32037c760b9f7b1010edf4eb9de07b68af8e0fdd8bdc5c0c7/ont-bonito-cuda111-0.4.0a0.tar.gz#sha256=ed1d55117b8295e2bce313b195623d2a3ae111242e7e74dd0daaabfc348eb02e (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0a0
2022-02-11T11:04:42,629   Found link https://files.pythonhosted.org/packages/a1/9f/19c6571eb24457fa6ed8cf7699f2586a4b376cf875c58f0c26ced182f6a1/ont-bonito-cuda111-0.4.0a1.tar.gz#sha256=7d920614f050aba11b20ccfa082e290c24b79c963445c64a6f5691cb98004e4e (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0a1
2022-02-11T11:04:42,630   Found link https://files.pythonhosted.org/packages/25/8c/28c43178094cb5cdae8df6c80d47e232a3e3013fba61f0bcdc02c5ca42f2/ont-bonito-cuda111-0.4.0a2.tar.gz#sha256=87a95bb62b6e1c5abe647d56732842d7fd7e84c2bdc0a96e427acba969d6879d (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0a2
2022-02-11T11:04:42,632   Found link https://files.pythonhosted.org/packages/b4/03/d3afcda7d932e31137dd77b3e7cdf4ddfee7e207ebe455410f65be8ad79a/ont-bonito-cuda111-0.4.0a4.tar.gz#sha256=abc1cf5a51a4bc0b5d35357ba26c7cbd690ac79f71f757b195e8e35736ee7bdf (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0a4
2022-02-11T11:04:42,633   Found link https://files.pythonhosted.org/packages/2e/c0/01dfa9cd140ab87acd038089bf3c9719a7e2794ef50c17c9796a719f2fb7/ont-bonito-cuda111-0.4.0.tar.gz#sha256=f0459988b8d21a07033ddd1919c351d50badf9fb9a2e4f55f77c607561d8d31f (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0
2022-02-11T11:04:42,634   Found link https://files.pythonhosted.org/packages/79/bf/17eb8226b121bc06d06717d650351a8527a5bd40e91786b3761a79249bf8/ont-bonito-cuda111-0.5.0a0.tar.gz#sha256=948cc5c23d7eb877caef805249d0bb252f75443a240d4880cd2c2db3f37a574f (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.5.0a0
2022-02-11T11:04:42,635   Found link https://files.pythonhosted.org/packages/25/1b/673484db9eb7a3885b6267e4e40c45caf4a99dd8cfa7d9a132a7c9bbe3d2/ont-bonito-cuda111-0.5.0.tar.gz#sha256=4efe988193c153dbc286d6df18896dd166e9375b2851ecf001ac61cf3700039a (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.5.0
2022-02-11T11:04:42,635   Found link https://files.pythonhosted.org/packages/e3/6d/9d71c39319000bfc7e764fc202d3ba660b47fdaa94184386c65914850b5b/ont-bonito-cuda111-0.5.1a0.tar.gz#sha256=24da3847a3b12036f5deeefe0e33f6e4937615209d5edd90d53bcc1251fdde10 (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.5.1a0
2022-02-11T11:04:42,636 Fetching project page and analyzing links: https://www.piwheels.org/simple/ont-bonito-cuda111/
2022-02-11T11:04:42,637 Getting page https://www.piwheels.org/simple/ont-bonito-cuda111/
2022-02-11T11:04:42,640 Found index url https://www.piwheels.org/simple
2022-02-11T11:04:42,885 Given no hashes to check 1 links for project 'ont-bonito-cuda111': discarding no candidates
2022-02-11T11:04:42,917 Collecting ont-bonito-cuda111==0.5.1a0
2022-02-11T11:04:42,921   Created temporary directory: /tmp/pip-unpack-xv549ivb
2022-02-11T11:04:43,155   Downloading ont-bonito-cuda111-0.5.1a0.tar.gz (47 kB)
2022-02-11T11:04:43,431   Added ont-bonito-cuda111==0.5.1a0 from https://files.pythonhosted.org/packages/e3/6d/9d71c39319000bfc7e764fc202d3ba660b47fdaa94184386c65914850b5b/ont-bonito-cuda111-0.5.1a0.tar.gz#sha256=24da3847a3b12036f5deeefe0e33f6e4937615209d5edd90d53bcc1251fdde10 to build tracker '/tmp/pip-req-tracker-2x7pmzzy'
2022-02-11T11:04:43,434     Running setup.py (path:/tmp/pip-wheel-w5bk63_4/ont-bonito-cuda111_fdd7c1c9320144259dd745a5b2839fe8/setup.py) egg_info for package ont-bonito-cuda111
2022-02-11T11:04:43,436     Created temporary directory: /tmp/pip-pip-egg-info-4wew5w15
2022-02-11T11:04:43,438     Running command python setup.py egg_info
2022-02-11T11:04:45,746     Building with CUDA 111
2022-02-11T11:04:45,774     running egg_info
2022-02-11T11:04:45,781     creating /tmp/pip-pip-egg-info-4wew5w15/ont_bonito_cuda111.egg-info
2022-02-11T11:04:45,784     writing dependency_links to /tmp/pip-pip-egg-info-4wew5w15/ont_bonito_cuda111.egg-info/dependency_links.txt
2022-02-11T11:04:45,787     writing entry points to /tmp/pip-pip-egg-info-4wew5w15/ont_bonito_cuda111.egg-info/entry_points.txt
2022-02-11T11:04:45,789     writing /tmp/pip-pip-egg-info-4wew5w15/ont_bonito_cuda111.egg-info/PKG-INFO
2022-02-11T11:04:45,795     writing requirements to /tmp/pip-pip-egg-info-4wew5w15/ont_bonito_cuda111.egg-info/requires.txt
2022-02-11T11:04:45,798     writing top-level names to /tmp/pip-pip-egg-info-4wew5w15/ont_bonito_cuda111.egg-info/top_level.txt
2022-02-11T11:04:45,802     writing manifest file '/tmp/pip-pip-egg-info-4wew5w15/ont_bonito_cuda111.egg-info/SOURCES.txt'
2022-02-11T11:04:46,169     reading manifest file '/tmp/pip-pip-egg-info-4wew5w15/ont_bonito_cuda111.egg-info/SOURCES.txt'
2022-02-11T11:04:46,173     reading manifest template 'MANIFEST.in'
2022-02-11T11:04:46,187     writing manifest file '/tmp/pip-pip-egg-info-4wew5w15/ont_bonito_cuda111.egg-info/SOURCES.txt'
2022-02-11T11:04:46,325   Source in /tmp/pip-wheel-w5bk63_4/ont-bonito-cuda111_fdd7c1c9320144259dd745a5b2839fe8 has version 0.5.1a0, which satisfies requirement ont-bonito-cuda111==0.5.1a0 from https://files.pythonhosted.org/packages/e3/6d/9d71c39319000bfc7e764fc202d3ba660b47fdaa94184386c65914850b5b/ont-bonito-cuda111-0.5.1a0.tar.gz#sha256=24da3847a3b12036f5deeefe0e33f6e4937615209d5edd90d53bcc1251fdde10
2022-02-11T11:04:46,327   Removed ont-bonito-cuda111==0.5.1a0 from https://files.pythonhosted.org/packages/e3/6d/9d71c39319000bfc7e764fc202d3ba660b47fdaa94184386c65914850b5b/ont-bonito-cuda111-0.5.1a0.tar.gz#sha256=24da3847a3b12036f5deeefe0e33f6e4937615209d5edd90d53bcc1251fdde10 from build tracker '/tmp/pip-req-tracker-2x7pmzzy'
2022-02-11T11:04:46,337 Created temporary directory: /tmp/pip-unpack-txrj05g8
2022-02-11T11:04:46,338 Building wheels for collected packages: ont-bonito-cuda111
2022-02-11T11:04:46,348   Created temporary directory: /tmp/pip-wheel-zx6n9ace
2022-02-11T11:04:46,349   Building wheel for ont-bonito-cuda111 (setup.py): started
2022-02-11T11:04:46,350   Destination directory: /tmp/pip-wheel-zx6n9ace
2022-02-11T11:04:46,350   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-w5bk63_4/ont-bonito-cuda111_fdd7c1c9320144259dd745a5b2839fe8/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-w5bk63_4/ont-bonito-cuda111_fdd7c1c9320144259dd745a5b2839fe8/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-zx6n9ace
2022-02-11T11:04:48,126   Building with CUDA 111
2022-02-11T11:04:48,676   running bdist_wheel
2022-02-11T11:04:48,687   running build
2022-02-11T11:04:48,688   running build_py
2022-02-11T11:04:49,023   creating build
2022-02-11T11:04:49,024   creating build/lib
2022-02-11T11:04:49,026   creating build/lib/bonito
2022-02-11T11:04:49,029   copying bonito/mod_util.py -> build/lib/bonito
2022-02-11T11:04:49,033   copying bonito/aligner.py -> build/lib/bonito
2022-02-11T11:04:49,037   copying bonito/multiprocessing.py -> build/lib/bonito
2022-02-11T11:04:49,043   copying bonito/io.py -> build/lib/bonito
2022-02-11T11:04:49,051   copying bonito/util.py -> build/lib/bonito
2022-02-11T11:04:49,059   copying bonito/fast5.py -> build/lib/bonito
2022-02-11T11:04:49,066   copying bonito/schedule.py -> build/lib/bonito
2022-02-11T11:04:49,072   copying bonito/data.py -> build/lib/bonito
2022-02-11T11:04:49,077   copying bonito/nn.py -> build/lib/bonito
2022-02-11T11:04:49,084   copying bonito/__init__.py -> build/lib/bonito
2022-02-11T11:04:49,088   copying bonito/training.py -> build/lib/bonito
2022-02-11T11:04:49,094   creating build/lib/bonito/crf
2022-02-11T11:04:49,096   copying bonito/crf/basecall.py -> build/lib/bonito/crf
2022-02-11T11:04:49,101   copying bonito/crf/model.py -> build/lib/bonito/crf
2022-02-11T11:04:49,106   copying bonito/crf/__init__.py -> build/lib/bonito/crf
2022-02-11T11:04:49,115   creating build/lib/bonito/cli
2022-02-11T11:04:49,118   copying bonito/cli/duplex.py -> build/lib/bonito/cli
2022-02-11T11:04:49,126   copying bonito/cli/train.py -> build/lib/bonito/cli
2022-02-11T11:04:49,131   copying bonito/cli/basecaller.py -> build/lib/bonito/cli
2022-02-11T11:04:49,136   copying bonito/cli/download.py -> build/lib/bonito/cli
2022-02-11T11:04:49,141   copying bonito/cli/view.py -> build/lib/bonito/cli
2022-02-11T11:04:49,145   copying bonito/cli/__init__.py -> build/lib/bonito/cli
2022-02-11T11:04:49,150   copying bonito/cli/evaluate.py -> build/lib/bonito/cli
2022-02-11T11:04:49,156   copying bonito/cli/export.py -> build/lib/bonito/cli
2022-02-11T11:04:49,162   copying bonito/cli/convert.py -> build/lib/bonito/cli
2022-02-11T11:04:49,169   creating build/lib/bonito/ctc
2022-02-11T11:04:49,171   copying bonito/ctc/basecall.py -> build/lib/bonito/ctc
2022-02-11T11:04:49,176   copying bonito/ctc/model.py -> build/lib/bonito/ctc
2022-02-11T11:04:49,181   copying bonito/ctc/__init__.py -> build/lib/bonito/ctc
2022-02-11T11:04:49,184   running egg_info
2022-02-11T11:04:49,214   writing dependency_links to ont_bonito_cuda111.egg-info/dependency_links.txt
2022-02-11T11:04:49,217   writing ont_bonito_cuda111.egg-info/PKG-INFO
2022-02-11T11:04:49,222   writing top-level names to ont_bonito_cuda111.egg-info/top_level.txt
2022-02-11T11:04:49,224   writing entry points to ont_bonito_cuda111.egg-info/entry_points.txt
2022-02-11T11:04:49,226   writing requirements to ont_bonito_cuda111.egg-info/requires.txt
2022-02-11T11:04:49,241   reading manifest file 'ont_bonito_cuda111.egg-info/SOURCES.txt'
2022-02-11T11:04:49,248   reading manifest template 'MANIFEST.in'
2022-02-11T11:04:49,264   writing manifest file 'ont_bonito_cuda111.egg-info/SOURCES.txt'
2022-02-11T11:04:49,270   creating build/lib/bonito/data
2022-02-11T11:04:49,272   copying bonito/data/README.md -> build/lib/bonito/data
2022-02-11T11:04:49,276   creating build/lib/bonito/models
2022-02-11T11:04:49,278   copying bonito/models/README.md -> build/lib/bonito/models
2022-02-11T11:04:49,283   creating build/lib/bonito/models/configs
2022-02-11T11:04:49,285   copying bonito/models/configs/dna_r9.4.1@v1.toml -> build/lib/bonito/models/configs
2022-02-11T11:04:49,290   copying bonito/models/configs/dna_r9.4.1@v2.toml -> build/lib/bonito/models/configs
2022-02-11T11:04:49,296   copying bonito/models/configs/dna_r9.4.1@v3.toml -> build/lib/bonito/models/configs
2022-02-11T11:04:49,316   installing to build/bdist.linux-armv7l/wheel
2022-02-11T11:04:49,318   running install
2022-02-11T11:04:49,324   running install_lib
2022-02-11T11:04:49,332   creating build/bdist.linux-armv7l
2022-02-11T11:04:49,333   creating build/bdist.linux-armv7l/wheel
2022-02-11T11:04:49,337   creating build/bdist.linux-armv7l/wheel/bonito
2022-02-11T11:04:49,339   copying build/lib/bonito/mod_util.py -> build/bdist.linux-armv7l/wheel/bonito
2022-02-11T11:04:49,343   copying build/lib/bonito/aligner.py -> build/bdist.linux-armv7l/wheel/bonito
2022-02-11T11:04:49,348   creating build/bdist.linux-armv7l/wheel/bonito/crf
2022-02-11T11:04:49,350   copying build/lib/bonito/crf/basecall.py -> build/bdist.linux-armv7l/wheel/bonito/crf
2022-02-11T11:04:49,354   copying build/lib/bonito/crf/model.py -> build/bdist.linux-armv7l/wheel/bonito/crf
2022-02-11T11:04:49,360   copying build/lib/bonito/crf/__init__.py -> build/bdist.linux-armv7l/wheel/bonito/crf
2022-02-11T11:04:49,365   copying build/lib/bonito/multiprocessing.py -> build/bdist.linux-armv7l/wheel/bonito
2022-02-11T11:04:49,374   creating build/bdist.linux-armv7l/wheel/bonito/cli
2022-02-11T11:04:49,376   copying build/lib/bonito/cli/duplex.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2022-02-11T11:04:49,383   copying build/lib/bonito/cli/train.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2022-02-11T11:04:49,387   copying build/lib/bonito/cli/basecaller.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2022-02-11T11:04:49,392   copying build/lib/bonito/cli/download.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2022-02-11T11:04:49,397   copying build/lib/bonito/cli/view.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2022-02-11T11:04:49,402   copying build/lib/bonito/cli/__init__.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2022-02-11T11:04:49,406   copying build/lib/bonito/cli/evaluate.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2022-02-11T11:04:49,412   copying build/lib/bonito/cli/export.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2022-02-11T11:04:49,418   copying build/lib/bonito/cli/convert.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2022-02-11T11:04:49,422   copying build/lib/bonito/io.py -> build/bdist.linux-armv7l/wheel/bonito
2022-02-11T11:04:49,428   copying build/lib/bonito/util.py -> build/bdist.linux-armv7l/wheel/bonito
2022-02-11T11:04:49,434   copying build/lib/bonito/fast5.py -> build/bdist.linux-armv7l/wheel/bonito
2022-02-11T11:04:49,440   creating build/bdist.linux-armv7l/wheel/bonito/models
2022-02-11T11:04:49,444   creating build/bdist.linux-armv7l/wheel/bonito/models/configs
2022-02-11T11:04:49,447   copying build/lib/bonito/models/configs/dna_r9.4.1@v2.toml -> build/bdist.linux-armv7l/wheel/bonito/models/configs
2022-02-11T11:04:49,453   copying build/lib/bonito/models/configs/dna_r9.4.1@v1.toml -> build/bdist.linux-armv7l/wheel/bonito/models/configs
2022-02-11T11:04:49,458   copying build/lib/bonito/models/configs/dna_r9.4.1@v3.toml -> build/bdist.linux-armv7l/wheel/bonito/models/configs
2022-02-11T11:04:49,462   copying build/lib/bonito/models/README.md -> build/bdist.linux-armv7l/wheel/bonito/models
2022-02-11T11:04:49,466   copying build/lib/bonito/schedule.py -> build/bdist.linux-armv7l/wheel/bonito
2022-02-11T11:04:49,472   copying build/lib/bonito/data.py -> build/bdist.linux-armv7l/wheel/bonito
2022-02-11T11:04:49,476   copying build/lib/bonito/nn.py -> build/bdist.linux-armv7l/wheel/bonito
2022-02-11T11:04:49,482   copying build/lib/bonito/__init__.py -> build/bdist.linux-armv7l/wheel/bonito
2022-02-11T11:04:49,487   copying build/lib/bonito/training.py -> build/bdist.linux-armv7l/wheel/bonito
2022-02-11T11:04:49,495   creating build/bdist.linux-armv7l/wheel/bonito/ctc
2022-02-11T11:04:49,497   copying build/lib/bonito/ctc/basecall.py -> build/bdist.linux-armv7l/wheel/bonito/ctc
2022-02-11T11:04:49,502   copying build/lib/bonito/ctc/model.py -> build/bdist.linux-armv7l/wheel/bonito/ctc
2022-02-11T11:04:49,507   copying build/lib/bonito/ctc/__init__.py -> build/bdist.linux-armv7l/wheel/bonito/ctc
2022-02-11T11:04:49,512   creating build/bdist.linux-armv7l/wheel/bonito/data
2022-02-11T11:04:49,513   copying build/lib/bonito/data/README.md -> build/bdist.linux-armv7l/wheel/bonito/data
2022-02-11T11:04:49,517   running install_egg_info
2022-02-11T11:04:49,545   Copying ont_bonito_cuda111.egg-info to build/bdist.linux-armv7l/wheel/ont_bonito_cuda111-0.5.1a0-py3.5.egg-info
2022-02-11T11:04:49,575   running install_scripts
2022-02-11T11:04:49,815   creating build/bdist.linux-armv7l/wheel/ont_bonito_cuda111-0.5.1a0.dist-info/WHEEL
2022-02-11T11:04:50,159   Building wheel for ont-bonito-cuda111 (setup.py): finished with status 'done'
2022-02-11T11:04:50,164   Created wheel for ont-bonito-cuda111: filename=ont_bonito_cuda111-0.5.1a0-py3-none-any.whl size=54123 sha256=796864665c170e8c36a9b804a3191312afaebe72a8dd563d9f583ea5b8f75ccf
2022-02-11T11:04:50,165   Stored in directory: /tmp/pip-ephem-wheel-cache-c_vvlkis/wheels/1e/3d/f0/291186e64126b3ab75cb8952767c0093d0d1b8c158bee189f2
2022-02-11T11:04:50,187 Successfully built ont-bonito-cuda111
2022-02-11T11:04:50,201 Removed build tracker: '/tmp/pip-req-tracker-2x7pmzzy'