2022-02-11T11:04:42,204 Created temporary directory: /tmp/pip-ephem-wheel-cache-c_vvlkis 2022-02-11T11:04:42,210 Created temporary directory: /tmp/pip-req-tracker-2x7pmzzy 2022-02-11T11:04:42,211 Initialized build tracking at /tmp/pip-req-tracker-2x7pmzzy 2022-02-11T11:04:42,212 Created build tracker: /tmp/pip-req-tracker-2x7pmzzy 2022-02-11T11:04:42,212 Entered build tracker: /tmp/pip-req-tracker-2x7pmzzy 2022-02-11T11:04:42,213 Created temporary directory: /tmp/pip-wheel-w5bk63_4 2022-02-11T11:04:42,285 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-02-11T11:04:42,288 2 location(s) to search for versions of ont-bonito-cuda111: 2022-02-11T11:04:42,288 * https://pypi.org/simple/ont-bonito-cuda111/ 2022-02-11T11:04:42,288 * https://www.piwheels.org/simple/ont-bonito-cuda111/ 2022-02-11T11:04:42,289 Fetching project page and analyzing links: https://pypi.org/simple/ont-bonito-cuda111/ 2022-02-11T11:04:42,291 Getting page https://pypi.org/simple/ont-bonito-cuda111/ 2022-02-11T11:04:42,296 Found index url https://pypi.org/simple 2022-02-11T11:04:42,628 Found link https://files.pythonhosted.org/packages/4b/e9/326d358ab1d32037c760b9f7b1010edf4eb9de07b68af8e0fdd8bdc5c0c7/ont-bonito-cuda111-0.4.0a0.tar.gz#sha256=ed1d55117b8295e2bce313b195623d2a3ae111242e7e74dd0daaabfc348eb02e (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0a0 2022-02-11T11:04:42,629 Found link https://files.pythonhosted.org/packages/a1/9f/19c6571eb24457fa6ed8cf7699f2586a4b376cf875c58f0c26ced182f6a1/ont-bonito-cuda111-0.4.0a1.tar.gz#sha256=7d920614f050aba11b20ccfa082e290c24b79c963445c64a6f5691cb98004e4e (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0a1 2022-02-11T11:04:42,630 Found link https://files.pythonhosted.org/packages/25/8c/28c43178094cb5cdae8df6c80d47e232a3e3013fba61f0bcdc02c5ca42f2/ont-bonito-cuda111-0.4.0a2.tar.gz#sha256=87a95bb62b6e1c5abe647d56732842d7fd7e84c2bdc0a96e427acba969d6879d (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0a2 2022-02-11T11:04:42,632 Found link https://files.pythonhosted.org/packages/b4/03/d3afcda7d932e31137dd77b3e7cdf4ddfee7e207ebe455410f65be8ad79a/ont-bonito-cuda111-0.4.0a4.tar.gz#sha256=abc1cf5a51a4bc0b5d35357ba26c7cbd690ac79f71f757b195e8e35736ee7bdf (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0a4 2022-02-11T11:04:42,633 Found link https://files.pythonhosted.org/packages/2e/c0/01dfa9cd140ab87acd038089bf3c9719a7e2794ef50c17c9796a719f2fb7/ont-bonito-cuda111-0.4.0.tar.gz#sha256=f0459988b8d21a07033ddd1919c351d50badf9fb9a2e4f55f77c607561d8d31f (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0 2022-02-11T11:04:42,634 Found link https://files.pythonhosted.org/packages/79/bf/17eb8226b121bc06d06717d650351a8527a5bd40e91786b3761a79249bf8/ont-bonito-cuda111-0.5.0a0.tar.gz#sha256=948cc5c23d7eb877caef805249d0bb252f75443a240d4880cd2c2db3f37a574f (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.5.0a0 2022-02-11T11:04:42,635 Found link https://files.pythonhosted.org/packages/25/1b/673484db9eb7a3885b6267e4e40c45caf4a99dd8cfa7d9a132a7c9bbe3d2/ont-bonito-cuda111-0.5.0.tar.gz#sha256=4efe988193c153dbc286d6df18896dd166e9375b2851ecf001ac61cf3700039a (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.5.0 2022-02-11T11:04:42,635 Found link https://files.pythonhosted.org/packages/e3/6d/9d71c39319000bfc7e764fc202d3ba660b47fdaa94184386c65914850b5b/ont-bonito-cuda111-0.5.1a0.tar.gz#sha256=24da3847a3b12036f5deeefe0e33f6e4937615209d5edd90d53bcc1251fdde10 (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.5.1a0 2022-02-11T11:04:42,636 Fetching project page and analyzing links: https://www.piwheels.org/simple/ont-bonito-cuda111/ 2022-02-11T11:04:42,637 Getting page https://www.piwheels.org/simple/ont-bonito-cuda111/ 2022-02-11T11:04:42,640 Found index url https://www.piwheels.org/simple 2022-02-11T11:04:42,885 Given no hashes to check 1 links for project 'ont-bonito-cuda111': discarding no candidates 2022-02-11T11:04:42,917 Collecting ont-bonito-cuda111==0.5.1a0 2022-02-11T11:04:42,921 Created temporary directory: /tmp/pip-unpack-xv549ivb 2022-02-11T11:04:43,155 Downloading ont-bonito-cuda111-0.5.1a0.tar.gz (47 kB) 2022-02-11T11:04:43,431 Added ont-bonito-cuda111==0.5.1a0 from https://files.pythonhosted.org/packages/e3/6d/9d71c39319000bfc7e764fc202d3ba660b47fdaa94184386c65914850b5b/ont-bonito-cuda111-0.5.1a0.tar.gz#sha256=24da3847a3b12036f5deeefe0e33f6e4937615209d5edd90d53bcc1251fdde10 to build tracker '/tmp/pip-req-tracker-2x7pmzzy' 2022-02-11T11:04:43,434 Running setup.py (path:/tmp/pip-wheel-w5bk63_4/ont-bonito-cuda111_fdd7c1c9320144259dd745a5b2839fe8/setup.py) egg_info for package ont-bonito-cuda111 2022-02-11T11:04:43,436 Created temporary directory: /tmp/pip-pip-egg-info-4wew5w15 2022-02-11T11:04:43,438 Running command python setup.py egg_info 2022-02-11T11:04:45,746 Building with CUDA 111 2022-02-11T11:04:45,774 running egg_info 2022-02-11T11:04:45,781 creating /tmp/pip-pip-egg-info-4wew5w15/ont_bonito_cuda111.egg-info 2022-02-11T11:04:45,784 writing dependency_links to /tmp/pip-pip-egg-info-4wew5w15/ont_bonito_cuda111.egg-info/dependency_links.txt 2022-02-11T11:04:45,787 writing entry points to /tmp/pip-pip-egg-info-4wew5w15/ont_bonito_cuda111.egg-info/entry_points.txt 2022-02-11T11:04:45,789 writing /tmp/pip-pip-egg-info-4wew5w15/ont_bonito_cuda111.egg-info/PKG-INFO 2022-02-11T11:04:45,795 writing requirements to /tmp/pip-pip-egg-info-4wew5w15/ont_bonito_cuda111.egg-info/requires.txt 2022-02-11T11:04:45,798 writing top-level names to /tmp/pip-pip-egg-info-4wew5w15/ont_bonito_cuda111.egg-info/top_level.txt 2022-02-11T11:04:45,802 writing manifest file '/tmp/pip-pip-egg-info-4wew5w15/ont_bonito_cuda111.egg-info/SOURCES.txt' 2022-02-11T11:04:46,169 reading manifest file '/tmp/pip-pip-egg-info-4wew5w15/ont_bonito_cuda111.egg-info/SOURCES.txt' 2022-02-11T11:04:46,173 reading manifest template 'MANIFEST.in' 2022-02-11T11:04:46,187 writing manifest file '/tmp/pip-pip-egg-info-4wew5w15/ont_bonito_cuda111.egg-info/SOURCES.txt' 2022-02-11T11:04:46,325 Source in /tmp/pip-wheel-w5bk63_4/ont-bonito-cuda111_fdd7c1c9320144259dd745a5b2839fe8 has version 0.5.1a0, which satisfies requirement ont-bonito-cuda111==0.5.1a0 from https://files.pythonhosted.org/packages/e3/6d/9d71c39319000bfc7e764fc202d3ba660b47fdaa94184386c65914850b5b/ont-bonito-cuda111-0.5.1a0.tar.gz#sha256=24da3847a3b12036f5deeefe0e33f6e4937615209d5edd90d53bcc1251fdde10 2022-02-11T11:04:46,327 Removed ont-bonito-cuda111==0.5.1a0 from https://files.pythonhosted.org/packages/e3/6d/9d71c39319000bfc7e764fc202d3ba660b47fdaa94184386c65914850b5b/ont-bonito-cuda111-0.5.1a0.tar.gz#sha256=24da3847a3b12036f5deeefe0e33f6e4937615209d5edd90d53bcc1251fdde10 from build tracker '/tmp/pip-req-tracker-2x7pmzzy' 2022-02-11T11:04:46,337 Created temporary directory: /tmp/pip-unpack-txrj05g8 2022-02-11T11:04:46,338 Building wheels for collected packages: ont-bonito-cuda111 2022-02-11T11:04:46,348 Created temporary directory: /tmp/pip-wheel-zx6n9ace 2022-02-11T11:04:46,349 Building wheel for ont-bonito-cuda111 (setup.py): started 2022-02-11T11:04:46,350 Destination directory: /tmp/pip-wheel-zx6n9ace 2022-02-11T11:04:46,350 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-w5bk63_4/ont-bonito-cuda111_fdd7c1c9320144259dd745a5b2839fe8/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-w5bk63_4/ont-bonito-cuda111_fdd7c1c9320144259dd745a5b2839fe8/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-zx6n9ace 2022-02-11T11:04:48,126 Building with CUDA 111 2022-02-11T11:04:48,676 running bdist_wheel 2022-02-11T11:04:48,687 running build 2022-02-11T11:04:48,688 running build_py 2022-02-11T11:04:49,023 creating build 2022-02-11T11:04:49,024 creating build/lib 2022-02-11T11:04:49,026 creating build/lib/bonito 2022-02-11T11:04:49,029 copying bonito/mod_util.py -> build/lib/bonito 2022-02-11T11:04:49,033 copying bonito/aligner.py -> build/lib/bonito 2022-02-11T11:04:49,037 copying bonito/multiprocessing.py -> build/lib/bonito 2022-02-11T11:04:49,043 copying bonito/io.py -> build/lib/bonito 2022-02-11T11:04:49,051 copying bonito/util.py -> build/lib/bonito 2022-02-11T11:04:49,059 copying bonito/fast5.py -> build/lib/bonito 2022-02-11T11:04:49,066 copying bonito/schedule.py -> build/lib/bonito 2022-02-11T11:04:49,072 copying bonito/data.py -> build/lib/bonito 2022-02-11T11:04:49,077 copying bonito/nn.py -> build/lib/bonito 2022-02-11T11:04:49,084 copying bonito/__init__.py -> build/lib/bonito 2022-02-11T11:04:49,088 copying bonito/training.py -> build/lib/bonito 2022-02-11T11:04:49,094 creating build/lib/bonito/crf 2022-02-11T11:04:49,096 copying bonito/crf/basecall.py -> build/lib/bonito/crf 2022-02-11T11:04:49,101 copying bonito/crf/model.py -> build/lib/bonito/crf 2022-02-11T11:04:49,106 copying bonito/crf/__init__.py -> build/lib/bonito/crf 2022-02-11T11:04:49,115 creating build/lib/bonito/cli 2022-02-11T11:04:49,118 copying bonito/cli/duplex.py -> build/lib/bonito/cli 2022-02-11T11:04:49,126 copying bonito/cli/train.py -> build/lib/bonito/cli 2022-02-11T11:04:49,131 copying bonito/cli/basecaller.py -> build/lib/bonito/cli 2022-02-11T11:04:49,136 copying bonito/cli/download.py -> build/lib/bonito/cli 2022-02-11T11:04:49,141 copying bonito/cli/view.py -> build/lib/bonito/cli 2022-02-11T11:04:49,145 copying bonito/cli/__init__.py -> build/lib/bonito/cli 2022-02-11T11:04:49,150 copying bonito/cli/evaluate.py -> build/lib/bonito/cli 2022-02-11T11:04:49,156 copying bonito/cli/export.py -> build/lib/bonito/cli 2022-02-11T11:04:49,162 copying bonito/cli/convert.py -> build/lib/bonito/cli 2022-02-11T11:04:49,169 creating build/lib/bonito/ctc 2022-02-11T11:04:49,171 copying bonito/ctc/basecall.py -> build/lib/bonito/ctc 2022-02-11T11:04:49,176 copying bonito/ctc/model.py -> build/lib/bonito/ctc 2022-02-11T11:04:49,181 copying bonito/ctc/__init__.py -> build/lib/bonito/ctc 2022-02-11T11:04:49,184 running egg_info 2022-02-11T11:04:49,214 writing dependency_links to ont_bonito_cuda111.egg-info/dependency_links.txt 2022-02-11T11:04:49,217 writing ont_bonito_cuda111.egg-info/PKG-INFO 2022-02-11T11:04:49,222 writing top-level names to ont_bonito_cuda111.egg-info/top_level.txt 2022-02-11T11:04:49,224 writing entry points to ont_bonito_cuda111.egg-info/entry_points.txt 2022-02-11T11:04:49,226 writing requirements to ont_bonito_cuda111.egg-info/requires.txt 2022-02-11T11:04:49,241 reading manifest file 'ont_bonito_cuda111.egg-info/SOURCES.txt' 2022-02-11T11:04:49,248 reading manifest template 'MANIFEST.in' 2022-02-11T11:04:49,264 writing manifest file 'ont_bonito_cuda111.egg-info/SOURCES.txt' 2022-02-11T11:04:49,270 creating build/lib/bonito/data 2022-02-11T11:04:49,272 copying bonito/data/README.md -> build/lib/bonito/data 2022-02-11T11:04:49,276 creating build/lib/bonito/models 2022-02-11T11:04:49,278 copying bonito/models/README.md -> build/lib/bonito/models 2022-02-11T11:04:49,283 creating build/lib/bonito/models/configs 2022-02-11T11:04:49,285 copying bonito/models/configs/dna_r9.4.1@v1.toml -> build/lib/bonito/models/configs 2022-02-11T11:04:49,290 copying bonito/models/configs/dna_r9.4.1@v2.toml -> build/lib/bonito/models/configs 2022-02-11T11:04:49,296 copying bonito/models/configs/dna_r9.4.1@v3.toml -> build/lib/bonito/models/configs 2022-02-11T11:04:49,316 installing to build/bdist.linux-armv7l/wheel 2022-02-11T11:04:49,318 running install 2022-02-11T11:04:49,324 running install_lib 2022-02-11T11:04:49,332 creating build/bdist.linux-armv7l 2022-02-11T11:04:49,333 creating build/bdist.linux-armv7l/wheel 2022-02-11T11:04:49,337 creating build/bdist.linux-armv7l/wheel/bonito 2022-02-11T11:04:49,339 copying build/lib/bonito/mod_util.py -> build/bdist.linux-armv7l/wheel/bonito 2022-02-11T11:04:49,343 copying build/lib/bonito/aligner.py -> build/bdist.linux-armv7l/wheel/bonito 2022-02-11T11:04:49,348 creating build/bdist.linux-armv7l/wheel/bonito/crf 2022-02-11T11:04:49,350 copying build/lib/bonito/crf/basecall.py -> build/bdist.linux-armv7l/wheel/bonito/crf 2022-02-11T11:04:49,354 copying build/lib/bonito/crf/model.py -> build/bdist.linux-armv7l/wheel/bonito/crf 2022-02-11T11:04:49,360 copying build/lib/bonito/crf/__init__.py -> build/bdist.linux-armv7l/wheel/bonito/crf 2022-02-11T11:04:49,365 copying build/lib/bonito/multiprocessing.py -> build/bdist.linux-armv7l/wheel/bonito 2022-02-11T11:04:49,374 creating build/bdist.linux-armv7l/wheel/bonito/cli 2022-02-11T11:04:49,376 copying build/lib/bonito/cli/duplex.py -> build/bdist.linux-armv7l/wheel/bonito/cli 2022-02-11T11:04:49,383 copying build/lib/bonito/cli/train.py -> build/bdist.linux-armv7l/wheel/bonito/cli 2022-02-11T11:04:49,387 copying build/lib/bonito/cli/basecaller.py -> build/bdist.linux-armv7l/wheel/bonito/cli 2022-02-11T11:04:49,392 copying build/lib/bonito/cli/download.py -> build/bdist.linux-armv7l/wheel/bonito/cli 2022-02-11T11:04:49,397 copying build/lib/bonito/cli/view.py -> build/bdist.linux-armv7l/wheel/bonito/cli 2022-02-11T11:04:49,402 copying build/lib/bonito/cli/__init__.py -> build/bdist.linux-armv7l/wheel/bonito/cli 2022-02-11T11:04:49,406 copying build/lib/bonito/cli/evaluate.py -> build/bdist.linux-armv7l/wheel/bonito/cli 2022-02-11T11:04:49,412 copying build/lib/bonito/cli/export.py -> build/bdist.linux-armv7l/wheel/bonito/cli 2022-02-11T11:04:49,418 copying build/lib/bonito/cli/convert.py -> build/bdist.linux-armv7l/wheel/bonito/cli 2022-02-11T11:04:49,422 copying build/lib/bonito/io.py -> build/bdist.linux-armv7l/wheel/bonito 2022-02-11T11:04:49,428 copying build/lib/bonito/util.py -> build/bdist.linux-armv7l/wheel/bonito 2022-02-11T11:04:49,434 copying build/lib/bonito/fast5.py -> build/bdist.linux-armv7l/wheel/bonito 2022-02-11T11:04:49,440 creating build/bdist.linux-armv7l/wheel/bonito/models 2022-02-11T11:04:49,444 creating build/bdist.linux-armv7l/wheel/bonito/models/configs 2022-02-11T11:04:49,447 copying build/lib/bonito/models/configs/dna_r9.4.1@v2.toml -> build/bdist.linux-armv7l/wheel/bonito/models/configs 2022-02-11T11:04:49,453 copying build/lib/bonito/models/configs/dna_r9.4.1@v1.toml -> build/bdist.linux-armv7l/wheel/bonito/models/configs 2022-02-11T11:04:49,458 copying build/lib/bonito/models/configs/dna_r9.4.1@v3.toml -> build/bdist.linux-armv7l/wheel/bonito/models/configs 2022-02-11T11:04:49,462 copying build/lib/bonito/models/README.md -> build/bdist.linux-armv7l/wheel/bonito/models 2022-02-11T11:04:49,466 copying build/lib/bonito/schedule.py -> build/bdist.linux-armv7l/wheel/bonito 2022-02-11T11:04:49,472 copying build/lib/bonito/data.py -> build/bdist.linux-armv7l/wheel/bonito 2022-02-11T11:04:49,476 copying build/lib/bonito/nn.py -> build/bdist.linux-armv7l/wheel/bonito 2022-02-11T11:04:49,482 copying build/lib/bonito/__init__.py -> build/bdist.linux-armv7l/wheel/bonito 2022-02-11T11:04:49,487 copying build/lib/bonito/training.py -> build/bdist.linux-armv7l/wheel/bonito 2022-02-11T11:04:49,495 creating build/bdist.linux-armv7l/wheel/bonito/ctc 2022-02-11T11:04:49,497 copying build/lib/bonito/ctc/basecall.py -> build/bdist.linux-armv7l/wheel/bonito/ctc 2022-02-11T11:04:49,502 copying build/lib/bonito/ctc/model.py -> build/bdist.linux-armv7l/wheel/bonito/ctc 2022-02-11T11:04:49,507 copying build/lib/bonito/ctc/__init__.py -> build/bdist.linux-armv7l/wheel/bonito/ctc 2022-02-11T11:04:49,512 creating build/bdist.linux-armv7l/wheel/bonito/data 2022-02-11T11:04:49,513 copying build/lib/bonito/data/README.md -> build/bdist.linux-armv7l/wheel/bonito/data 2022-02-11T11:04:49,517 running install_egg_info 2022-02-11T11:04:49,545 Copying ont_bonito_cuda111.egg-info to build/bdist.linux-armv7l/wheel/ont_bonito_cuda111-0.5.1a0-py3.5.egg-info 2022-02-11T11:04:49,575 running install_scripts 2022-02-11T11:04:49,815 creating build/bdist.linux-armv7l/wheel/ont_bonito_cuda111-0.5.1a0.dist-info/WHEEL 2022-02-11T11:04:50,159 Building wheel for ont-bonito-cuda111 (setup.py): finished with status 'done' 2022-02-11T11:04:50,164 Created wheel for ont-bonito-cuda111: filename=ont_bonito_cuda111-0.5.1a0-py3-none-any.whl size=54123 sha256=796864665c170e8c36a9b804a3191312afaebe72a8dd563d9f583ea5b8f75ccf 2022-02-11T11:04:50,165 Stored in directory: /tmp/pip-ephem-wheel-cache-c_vvlkis/wheels/1e/3d/f0/291186e64126b3ab75cb8952767c0093d0d1b8c158bee189f2 2022-02-11T11:04:50,187 Successfully built ont-bonito-cuda111 2022-02-11T11:04:50,201 Removed build tracker: '/tmp/pip-req-tracker-2x7pmzzy'