2022-02-11T13:55:09,151 Created temporary directory: /tmp/pip-ephem-wheel-cache-kwmak599
2022-02-11T13:55:09,157 Created temporary directory: /tmp/pip-req-tracker-063l08p8
2022-02-11T13:55:09,158 Initialized build tracking at /tmp/pip-req-tracker-063l08p8
2022-02-11T13:55:09,158 Created build tracker: /tmp/pip-req-tracker-063l08p8
2022-02-11T13:55:09,159 Entered build tracker: /tmp/pip-req-tracker-063l08p8
2022-02-11T13:55:09,160 Created temporary directory: /tmp/pip-wheel-tv0vwji2
2022-02-11T13:55:09,222 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-02-11T13:55:09,226 2 location(s) to search for versions of ont-bonito-cuda111:
2022-02-11T13:55:09,226 * https://pypi.org/simple/ont-bonito-cuda111/
2022-02-11T13:55:09,226 * https://www.piwheels.org/simple/ont-bonito-cuda111/
2022-02-11T13:55:09,226 Fetching project page and analyzing links: https://pypi.org/simple/ont-bonito-cuda111/
2022-02-11T13:55:09,229 Getting page https://pypi.org/simple/ont-bonito-cuda111/
2022-02-11T13:55:09,233 Found index url https://pypi.org/simple
2022-02-11T13:55:09,560   Found link https://files.pythonhosted.org/packages/4b/e9/326d358ab1d32037c760b9f7b1010edf4eb9de07b68af8e0fdd8bdc5c0c7/ont-bonito-cuda111-0.4.0a0.tar.gz#sha256=ed1d55117b8295e2bce313b195623d2a3ae111242e7e74dd0daaabfc348eb02e (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0a0
2022-02-11T13:55:09,561   Found link https://files.pythonhosted.org/packages/a1/9f/19c6571eb24457fa6ed8cf7699f2586a4b376cf875c58f0c26ced182f6a1/ont-bonito-cuda111-0.4.0a1.tar.gz#sha256=7d920614f050aba11b20ccfa082e290c24b79c963445c64a6f5691cb98004e4e (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0a1
2022-02-11T13:55:09,563   Found link https://files.pythonhosted.org/packages/25/8c/28c43178094cb5cdae8df6c80d47e232a3e3013fba61f0bcdc02c5ca42f2/ont-bonito-cuda111-0.4.0a2.tar.gz#sha256=87a95bb62b6e1c5abe647d56732842d7fd7e84c2bdc0a96e427acba969d6879d (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0a2
2022-02-11T13:55:09,564   Found link https://files.pythonhosted.org/packages/b4/03/d3afcda7d932e31137dd77b3e7cdf4ddfee7e207ebe455410f65be8ad79a/ont-bonito-cuda111-0.4.0a4.tar.gz#sha256=abc1cf5a51a4bc0b5d35357ba26c7cbd690ac79f71f757b195e8e35736ee7bdf (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0a4
2022-02-11T13:55:09,565   Found link https://files.pythonhosted.org/packages/2e/c0/01dfa9cd140ab87acd038089bf3c9719a7e2794ef50c17c9796a719f2fb7/ont-bonito-cuda111-0.4.0.tar.gz#sha256=f0459988b8d21a07033ddd1919c351d50badf9fb9a2e4f55f77c607561d8d31f (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0
2022-02-11T13:55:09,566   Found link https://files.pythonhosted.org/packages/79/bf/17eb8226b121bc06d06717d650351a8527a5bd40e91786b3761a79249bf8/ont-bonito-cuda111-0.5.0a0.tar.gz#sha256=948cc5c23d7eb877caef805249d0bb252f75443a240d4880cd2c2db3f37a574f (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.5.0a0
2022-02-11T13:55:09,567   Found link https://files.pythonhosted.org/packages/25/1b/673484db9eb7a3885b6267e4e40c45caf4a99dd8cfa7d9a132a7c9bbe3d2/ont-bonito-cuda111-0.5.0.tar.gz#sha256=4efe988193c153dbc286d6df18896dd166e9375b2851ecf001ac61cf3700039a (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.5.0
2022-02-11T13:55:09,568   Found link https://files.pythonhosted.org/packages/e3/6d/9d71c39319000bfc7e764fc202d3ba660b47fdaa94184386c65914850b5b/ont-bonito-cuda111-0.5.1a0.tar.gz#sha256=24da3847a3b12036f5deeefe0e33f6e4937615209d5edd90d53bcc1251fdde10 (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.5.1a0
2022-02-11T13:55:09,568   Found link https://files.pythonhosted.org/packages/73/91/2f55f4b660b61e68bfd934f7c35e57c26ca59c2412af9052811fc0ddd979/ont-bonito-cuda111-0.5.1.tar.gz#sha256=3977cda539ef7130eb3e13a773bf75bb988178882d45f92b173823e36658138a (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.5.1
2022-02-11T13:55:09,569 Fetching project page and analyzing links: https://www.piwheels.org/simple/ont-bonito-cuda111/
2022-02-11T13:55:09,570 Getting page https://www.piwheels.org/simple/ont-bonito-cuda111/
2022-02-11T13:55:09,573 Found index url https://www.piwheels.org/simple
2022-02-11T13:55:09,830   Skipping link: No binaries permitted for ont-bonito-cuda111: https://www.piwheels.org/simple/ont-bonito-cuda111/ont_bonito_cuda111-0.5.1a0-py3-none-any.whl#sha256=796864665c170e8c36a9b804a3191312afaebe72a8dd563d9f583ea5b8f75ccf (from https://www.piwheels.org/simple/ont-bonito-cuda111/)
2022-02-11T13:55:09,862 Given no hashes to check 1 links for project 'ont-bonito-cuda111': discarding no candidates
2022-02-11T13:55:09,895 Collecting ont-bonito-cuda111==0.5.1
2022-02-11T13:55:09,898   Created temporary directory: /tmp/pip-unpack-6pzos1xb
2022-02-11T13:55:10,126   Downloading ont-bonito-cuda111-0.5.1.tar.gz (47 kB)
2022-02-11T13:55:10,395   Added ont-bonito-cuda111==0.5.1 from https://files.pythonhosted.org/packages/73/91/2f55f4b660b61e68bfd934f7c35e57c26ca59c2412af9052811fc0ddd979/ont-bonito-cuda111-0.5.1.tar.gz#sha256=3977cda539ef7130eb3e13a773bf75bb988178882d45f92b173823e36658138a to build tracker '/tmp/pip-req-tracker-063l08p8'
2022-02-11T13:55:10,398     Running setup.py (path:/tmp/pip-wheel-tv0vwji2/ont-bonito-cuda111_515ff253ea5a4cc9b0d61b5e791d69ac/setup.py) egg_info for package ont-bonito-cuda111
2022-02-11T13:55:10,400     Created temporary directory: /tmp/pip-pip-egg-info-3tmo7a23
2022-02-11T13:55:10,401     Running command python setup.py egg_info
2022-02-11T13:55:12,731     Building with CUDA 111
2022-02-11T13:55:12,759     running egg_info
2022-02-11T13:55:12,765     creating /tmp/pip-pip-egg-info-3tmo7a23/ont_bonito_cuda111.egg-info
2022-02-11T13:55:12,768     writing requirements to /tmp/pip-pip-egg-info-3tmo7a23/ont_bonito_cuda111.egg-info/requires.txt
2022-02-11T13:55:12,771     writing top-level names to /tmp/pip-pip-egg-info-3tmo7a23/ont_bonito_cuda111.egg-info/top_level.txt
2022-02-11T13:55:12,773     writing dependency_links to /tmp/pip-pip-egg-info-3tmo7a23/ont_bonito_cuda111.egg-info/dependency_links.txt
2022-02-11T13:55:12,777     writing entry points to /tmp/pip-pip-egg-info-3tmo7a23/ont_bonito_cuda111.egg-info/entry_points.txt
2022-02-11T13:55:12,779     writing /tmp/pip-pip-egg-info-3tmo7a23/ont_bonito_cuda111.egg-info/PKG-INFO
2022-02-11T13:55:12,787     writing manifest file '/tmp/pip-pip-egg-info-3tmo7a23/ont_bonito_cuda111.egg-info/SOURCES.txt'
2022-02-11T13:55:13,155     reading manifest file '/tmp/pip-pip-egg-info-3tmo7a23/ont_bonito_cuda111.egg-info/SOURCES.txt'
2022-02-11T13:55:13,158     reading manifest template 'MANIFEST.in'
2022-02-11T13:55:13,173     writing manifest file '/tmp/pip-pip-egg-info-3tmo7a23/ont_bonito_cuda111.egg-info/SOURCES.txt'
2022-02-11T13:55:13,311   Source in /tmp/pip-wheel-tv0vwji2/ont-bonito-cuda111_515ff253ea5a4cc9b0d61b5e791d69ac has version 0.5.1, which satisfies requirement ont-bonito-cuda111==0.5.1 from https://files.pythonhosted.org/packages/73/91/2f55f4b660b61e68bfd934f7c35e57c26ca59c2412af9052811fc0ddd979/ont-bonito-cuda111-0.5.1.tar.gz#sha256=3977cda539ef7130eb3e13a773bf75bb988178882d45f92b173823e36658138a
2022-02-11T13:55:13,313   Removed ont-bonito-cuda111==0.5.1 from https://files.pythonhosted.org/packages/73/91/2f55f4b660b61e68bfd934f7c35e57c26ca59c2412af9052811fc0ddd979/ont-bonito-cuda111-0.5.1.tar.gz#sha256=3977cda539ef7130eb3e13a773bf75bb988178882d45f92b173823e36658138a from build tracker '/tmp/pip-req-tracker-063l08p8'
2022-02-11T13:55:13,323 Created temporary directory: /tmp/pip-unpack-8329eqb5
2022-02-11T13:55:13,324 Building wheels for collected packages: ont-bonito-cuda111
2022-02-11T13:55:13,334   Created temporary directory: /tmp/pip-wheel-ns4o1t5s
2022-02-11T13:55:13,335   Building wheel for ont-bonito-cuda111 (setup.py): started
2022-02-11T13:55:13,335   Destination directory: /tmp/pip-wheel-ns4o1t5s
2022-02-11T13:55:13,336   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-tv0vwji2/ont-bonito-cuda111_515ff253ea5a4cc9b0d61b5e791d69ac/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-tv0vwji2/ont-bonito-cuda111_515ff253ea5a4cc9b0d61b5e791d69ac/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ns4o1t5s
2022-02-11T13:55:15,138   Building with CUDA 111
2022-02-11T13:55:15,720   running bdist_wheel
2022-02-11T13:55:15,732   running build
2022-02-11T13:55:15,732   running build_py
2022-02-11T13:55:16,069   creating build
2022-02-11T13:55:16,070   creating build/lib
2022-02-11T13:55:16,072   creating build/lib/bonito
2022-02-11T13:55:16,075   copying bonito/multiprocessing.py -> build/lib/bonito
2022-02-11T13:55:16,081   copying bonito/util.py -> build/lib/bonito
2022-02-11T13:55:16,086   copying bonito/fast5.py -> build/lib/bonito
2022-02-11T13:55:16,091   copying bonito/__init__.py -> build/lib/bonito
2022-02-11T13:55:16,095   copying bonito/nn.py -> build/lib/bonito
2022-02-11T13:55:16,101   copying bonito/training.py -> build/lib/bonito
2022-02-11T13:55:16,108   copying bonito/io.py -> build/lib/bonito
2022-02-11T13:55:16,116   copying bonito/schedule.py -> build/lib/bonito
2022-02-11T13:55:16,122   copying bonito/mod_util.py -> build/lib/bonito
2022-02-11T13:55:16,127   copying bonito/data.py -> build/lib/bonito
2022-02-11T13:55:16,131   copying bonito/aligner.py -> build/lib/bonito
2022-02-11T13:55:16,136   creating build/lib/bonito/crf
2022-02-11T13:55:16,139   copying bonito/crf/model.py -> build/lib/bonito/crf
2022-02-11T13:55:16,144   copying bonito/crf/basecall.py -> build/lib/bonito/crf
2022-02-11T13:55:16,148   copying bonito/crf/__init__.py -> build/lib/bonito/crf
2022-02-11T13:55:16,153   creating build/lib/bonito/ctc
2022-02-11T13:55:16,156   copying bonito/ctc/model.py -> build/lib/bonito/ctc
2022-02-11T13:55:16,161   copying bonito/ctc/basecall.py -> build/lib/bonito/ctc
2022-02-11T13:55:16,166   copying bonito/ctc/__init__.py -> build/lib/bonito/ctc
2022-02-11T13:55:16,175   creating build/lib/bonito/cli
2022-02-11T13:55:16,178   copying bonito/cli/basecaller.py -> build/lib/bonito/cli
2022-02-11T13:55:16,185   copying bonito/cli/download.py -> build/lib/bonito/cli
2022-02-11T13:55:16,190   copying bonito/cli/train.py -> build/lib/bonito/cli
2022-02-11T13:55:16,195   copying bonito/cli/evaluate.py -> build/lib/bonito/cli
2022-02-11T13:55:16,199   copying bonito/cli/__init__.py -> build/lib/bonito/cli
2022-02-11T13:55:16,202   copying bonito/cli/convert.py -> build/lib/bonito/cli
2022-02-11T13:55:16,207   copying bonito/cli/view.py -> build/lib/bonito/cli
2022-02-11T13:55:16,211   copying bonito/cli/export.py -> build/lib/bonito/cli
2022-02-11T13:55:16,216   copying bonito/cli/duplex.py -> build/lib/bonito/cli
2022-02-11T13:55:16,220   running egg_info
2022-02-11T13:55:16,251   writing requirements to ont_bonito_cuda111.egg-info/requires.txt
2022-02-11T13:55:16,254   writing dependency_links to ont_bonito_cuda111.egg-info/dependency_links.txt
2022-02-11T13:55:16,257   writing ont_bonito_cuda111.egg-info/PKG-INFO
2022-02-11T13:55:16,262   writing top-level names to ont_bonito_cuda111.egg-info/top_level.txt
2022-02-11T13:55:16,264   writing entry points to ont_bonito_cuda111.egg-info/entry_points.txt
2022-02-11T13:55:16,278   reading manifest file 'ont_bonito_cuda111.egg-info/SOURCES.txt'
2022-02-11T13:55:16,285   reading manifest template 'MANIFEST.in'
2022-02-11T13:55:16,301   writing manifest file 'ont_bonito_cuda111.egg-info/SOURCES.txt'
2022-02-11T13:55:16,306   creating build/lib/bonito/data
2022-02-11T13:55:16,308   copying bonito/data/README.md -> build/lib/bonito/data
2022-02-11T13:55:16,313   creating build/lib/bonito/models
2022-02-11T13:55:16,315   copying bonito/models/README.md -> build/lib/bonito/models
2022-02-11T13:55:16,320   creating build/lib/bonito/models/configs
2022-02-11T13:55:16,322   copying bonito/models/configs/dna_r9.4.1@v1.toml -> build/lib/bonito/models/configs
2022-02-11T13:55:16,327   copying bonito/models/configs/dna_r9.4.1@v2.toml -> build/lib/bonito/models/configs
2022-02-11T13:55:16,333   copying bonito/models/configs/dna_r9.4.1@v3.toml -> build/lib/bonito/models/configs
2022-02-11T13:55:16,353   installing to build/bdist.linux-armv7l/wheel
2022-02-11T13:55:16,354   running install
2022-02-11T13:55:16,357   running install_lib
2022-02-11T13:55:16,365   creating build/bdist.linux-armv7l
2022-02-11T13:55:16,366   creating build/bdist.linux-armv7l/wheel
2022-02-11T13:55:16,370   creating build/bdist.linux-armv7l/wheel/bonito
2022-02-11T13:55:16,373   creating build/bdist.linux-armv7l/wheel/bonito/crf
2022-02-11T13:55:16,375   copying build/lib/bonito/crf/model.py -> build/bdist.linux-armv7l/wheel/bonito/crf
2022-02-11T13:55:16,381   copying build/lib/bonito/crf/basecall.py -> build/bdist.linux-armv7l/wheel/bonito/crf
2022-02-11T13:55:16,385   copying build/lib/bonito/crf/__init__.py -> build/bdist.linux-armv7l/wheel/bonito/crf
2022-02-11T13:55:16,389   copying build/lib/bonito/multiprocessing.py -> build/bdist.linux-armv7l/wheel/bonito
2022-02-11T13:55:16,394   copying build/lib/bonito/util.py -> build/bdist.linux-armv7l/wheel/bonito
2022-02-11T13:55:16,401   copying build/lib/bonito/fast5.py -> build/bdist.linux-armv7l/wheel/bonito
2022-02-11T13:55:16,410   creating build/bdist.linux-armv7l/wheel/bonito/ctc
2022-02-11T13:55:16,412   copying build/lib/bonito/ctc/model.py -> build/bdist.linux-armv7l/wheel/bonito/ctc
2022-02-11T13:55:16,418   copying build/lib/bonito/ctc/basecall.py -> build/bdist.linux-armv7l/wheel/bonito/ctc
2022-02-11T13:55:16,422   copying build/lib/bonito/ctc/__init__.py -> build/bdist.linux-armv7l/wheel/bonito/ctc
2022-02-11T13:55:16,426   copying build/lib/bonito/__init__.py -> build/bdist.linux-armv7l/wheel/bonito
2022-02-11T13:55:16,431   creating build/bdist.linux-armv7l/wheel/bonito/data
2022-02-11T13:55:16,433   copying build/lib/bonito/data/README.md -> build/bdist.linux-armv7l/wheel/bonito/data
2022-02-11T13:55:16,439   copying build/lib/bonito/nn.py -> build/bdist.linux-armv7l/wheel/bonito
2022-02-11T13:55:16,445   copying build/lib/bonito/training.py -> build/bdist.linux-armv7l/wheel/bonito
2022-02-11T13:55:16,452   copying build/lib/bonito/io.py -> build/bdist.linux-armv7l/wheel/bonito
2022-02-11T13:55:16,460   creating build/bdist.linux-armv7l/wheel/bonito/models
2022-02-11T13:55:16,462   copying build/lib/bonito/models/README.md -> build/bdist.linux-armv7l/wheel/bonito/models
2022-02-11T13:55:16,467   creating build/bdist.linux-armv7l/wheel/bonito/models/configs
2022-02-11T13:55:16,469   copying build/lib/bonito/models/configs/dna_r9.4.1@v3.toml -> build/bdist.linux-armv7l/wheel/bonito/models/configs
2022-02-11T13:55:16,473   copying build/lib/bonito/models/configs/dna_r9.4.1@v2.toml -> build/bdist.linux-armv7l/wheel/bonito/models/configs
2022-02-11T13:55:16,478   copying build/lib/bonito/models/configs/dna_r9.4.1@v1.toml -> build/bdist.linux-armv7l/wheel/bonito/models/configs
2022-02-11T13:55:16,486   creating build/bdist.linux-armv7l/wheel/bonito/cli
2022-02-11T13:55:16,488   copying build/lib/bonito/cli/basecaller.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2022-02-11T13:55:16,495   copying build/lib/bonito/cli/download.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2022-02-11T13:55:16,500   copying build/lib/bonito/cli/train.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2022-02-11T13:55:16,505   copying build/lib/bonito/cli/evaluate.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2022-02-11T13:55:16,509   copying build/lib/bonito/cli/__init__.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2022-02-11T13:55:16,513   copying build/lib/bonito/cli/convert.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2022-02-11T13:55:16,519   copying build/lib/bonito/cli/view.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2022-02-11T13:55:16,524   copying build/lib/bonito/cli/export.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2022-02-11T13:55:16,530   copying build/lib/bonito/cli/duplex.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2022-02-11T13:55:16,537   copying build/lib/bonito/schedule.py -> build/bdist.linux-armv7l/wheel/bonito
2022-02-11T13:55:16,542   copying build/lib/bonito/mod_util.py -> build/bdist.linux-armv7l/wheel/bonito
2022-02-11T13:55:16,546   copying build/lib/bonito/data.py -> build/bdist.linux-armv7l/wheel/bonito
2022-02-11T13:55:16,551   copying build/lib/bonito/aligner.py -> build/bdist.linux-armv7l/wheel/bonito
2022-02-11T13:55:16,554   running install_egg_info
2022-02-11T13:55:16,572   Copying ont_bonito_cuda111.egg-info to build/bdist.linux-armv7l/wheel/ont_bonito_cuda111-0.5.1-py3.5.egg-info
2022-02-11T13:55:16,609   running install_scripts
2022-02-11T13:55:16,857   creating build/bdist.linux-armv7l/wheel/ont_bonito_cuda111-0.5.1.dist-info/WHEEL
2022-02-11T13:55:17,214   Building wheel for ont-bonito-cuda111 (setup.py): finished with status 'done'
2022-02-11T13:55:17,219   Created wheel for ont-bonito-cuda111: filename=ont_bonito_cuda111-0.5.1-py3-none-any.whl size=54081 sha256=afddc1337c8bc21fd69ae9479da2c8b0cef796a55a0a405d944c23c8e3b390e9
2022-02-11T13:55:17,220   Stored in directory: /tmp/pip-ephem-wheel-cache-kwmak599/wheels/38/87/92/d25ad5ae87b9c8c13506cdadf06867d2b497426e86a2ea1d66
2022-02-11T13:55:17,242 Successfully built ont-bonito-cuda111
2022-02-11T13:55:17,256 Removed build tracker: '/tmp/pip-req-tracker-063l08p8'