2022-02-11T13:55:09,151 Created temporary directory: /tmp/pip-ephem-wheel-cache-kwmak599 2022-02-11T13:55:09,157 Created temporary directory: /tmp/pip-req-tracker-063l08p8 2022-02-11T13:55:09,158 Initialized build tracking at /tmp/pip-req-tracker-063l08p8 2022-02-11T13:55:09,158 Created build tracker: /tmp/pip-req-tracker-063l08p8 2022-02-11T13:55:09,159 Entered build tracker: /tmp/pip-req-tracker-063l08p8 2022-02-11T13:55:09,160 Created temporary directory: /tmp/pip-wheel-tv0vwji2 2022-02-11T13:55:09,222 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-02-11T13:55:09,226 2 location(s) to search for versions of ont-bonito-cuda111: 2022-02-11T13:55:09,226 * https://pypi.org/simple/ont-bonito-cuda111/ 2022-02-11T13:55:09,226 * https://www.piwheels.org/simple/ont-bonito-cuda111/ 2022-02-11T13:55:09,226 Fetching project page and analyzing links: https://pypi.org/simple/ont-bonito-cuda111/ 2022-02-11T13:55:09,229 Getting page https://pypi.org/simple/ont-bonito-cuda111/ 2022-02-11T13:55:09,233 Found index url https://pypi.org/simple 2022-02-11T13:55:09,560 Found link https://files.pythonhosted.org/packages/4b/e9/326d358ab1d32037c760b9f7b1010edf4eb9de07b68af8e0fdd8bdc5c0c7/ont-bonito-cuda111-0.4.0a0.tar.gz#sha256=ed1d55117b8295e2bce313b195623d2a3ae111242e7e74dd0daaabfc348eb02e (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0a0 2022-02-11T13:55:09,561 Found link https://files.pythonhosted.org/packages/a1/9f/19c6571eb24457fa6ed8cf7699f2586a4b376cf875c58f0c26ced182f6a1/ont-bonito-cuda111-0.4.0a1.tar.gz#sha256=7d920614f050aba11b20ccfa082e290c24b79c963445c64a6f5691cb98004e4e (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0a1 2022-02-11T13:55:09,563 Found link https://files.pythonhosted.org/packages/25/8c/28c43178094cb5cdae8df6c80d47e232a3e3013fba61f0bcdc02c5ca42f2/ont-bonito-cuda111-0.4.0a2.tar.gz#sha256=87a95bb62b6e1c5abe647d56732842d7fd7e84c2bdc0a96e427acba969d6879d (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0a2 2022-02-11T13:55:09,564 Found link https://files.pythonhosted.org/packages/b4/03/d3afcda7d932e31137dd77b3e7cdf4ddfee7e207ebe455410f65be8ad79a/ont-bonito-cuda111-0.4.0a4.tar.gz#sha256=abc1cf5a51a4bc0b5d35357ba26c7cbd690ac79f71f757b195e8e35736ee7bdf (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0a4 2022-02-11T13:55:09,565 Found link https://files.pythonhosted.org/packages/2e/c0/01dfa9cd140ab87acd038089bf3c9719a7e2794ef50c17c9796a719f2fb7/ont-bonito-cuda111-0.4.0.tar.gz#sha256=f0459988b8d21a07033ddd1919c351d50badf9fb9a2e4f55f77c607561d8d31f (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.4.0 2022-02-11T13:55:09,566 Found link https://files.pythonhosted.org/packages/79/bf/17eb8226b121bc06d06717d650351a8527a5bd40e91786b3761a79249bf8/ont-bonito-cuda111-0.5.0a0.tar.gz#sha256=948cc5c23d7eb877caef805249d0bb252f75443a240d4880cd2c2db3f37a574f (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.5.0a0 2022-02-11T13:55:09,567 Found link https://files.pythonhosted.org/packages/25/1b/673484db9eb7a3885b6267e4e40c45caf4a99dd8cfa7d9a132a7c9bbe3d2/ont-bonito-cuda111-0.5.0.tar.gz#sha256=4efe988193c153dbc286d6df18896dd166e9375b2851ecf001ac61cf3700039a (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.5.0 2022-02-11T13:55:09,568 Found link https://files.pythonhosted.org/packages/e3/6d/9d71c39319000bfc7e764fc202d3ba660b47fdaa94184386c65914850b5b/ont-bonito-cuda111-0.5.1a0.tar.gz#sha256=24da3847a3b12036f5deeefe0e33f6e4937615209d5edd90d53bcc1251fdde10 (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.5.1a0 2022-02-11T13:55:09,568 Found link https://files.pythonhosted.org/packages/73/91/2f55f4b660b61e68bfd934f7c35e57c26ca59c2412af9052811fc0ddd979/ont-bonito-cuda111-0.5.1.tar.gz#sha256=3977cda539ef7130eb3e13a773bf75bb988178882d45f92b173823e36658138a (from https://pypi.org/simple/ont-bonito-cuda111/), version: 0.5.1 2022-02-11T13:55:09,569 Fetching project page and analyzing links: https://www.piwheels.org/simple/ont-bonito-cuda111/ 2022-02-11T13:55:09,570 Getting page https://www.piwheels.org/simple/ont-bonito-cuda111/ 2022-02-11T13:55:09,573 Found index url https://www.piwheels.org/simple 2022-02-11T13:55:09,830 Skipping link: No binaries permitted for ont-bonito-cuda111: https://www.piwheels.org/simple/ont-bonito-cuda111/ont_bonito_cuda111-0.5.1a0-py3-none-any.whl#sha256=796864665c170e8c36a9b804a3191312afaebe72a8dd563d9f583ea5b8f75ccf (from https://www.piwheels.org/simple/ont-bonito-cuda111/) 2022-02-11T13:55:09,862 Given no hashes to check 1 links for project 'ont-bonito-cuda111': discarding no candidates 2022-02-11T13:55:09,895 Collecting ont-bonito-cuda111==0.5.1 2022-02-11T13:55:09,898 Created temporary directory: /tmp/pip-unpack-6pzos1xb 2022-02-11T13:55:10,126 Downloading ont-bonito-cuda111-0.5.1.tar.gz (47 kB) 2022-02-11T13:55:10,395 Added ont-bonito-cuda111==0.5.1 from https://files.pythonhosted.org/packages/73/91/2f55f4b660b61e68bfd934f7c35e57c26ca59c2412af9052811fc0ddd979/ont-bonito-cuda111-0.5.1.tar.gz#sha256=3977cda539ef7130eb3e13a773bf75bb988178882d45f92b173823e36658138a to build tracker '/tmp/pip-req-tracker-063l08p8' 2022-02-11T13:55:10,398 Running setup.py (path:/tmp/pip-wheel-tv0vwji2/ont-bonito-cuda111_515ff253ea5a4cc9b0d61b5e791d69ac/setup.py) egg_info for package ont-bonito-cuda111 2022-02-11T13:55:10,400 Created temporary directory: /tmp/pip-pip-egg-info-3tmo7a23 2022-02-11T13:55:10,401 Running command python setup.py egg_info 2022-02-11T13:55:12,731 Building with CUDA 111 2022-02-11T13:55:12,759 running egg_info 2022-02-11T13:55:12,765 creating /tmp/pip-pip-egg-info-3tmo7a23/ont_bonito_cuda111.egg-info 2022-02-11T13:55:12,768 writing requirements to /tmp/pip-pip-egg-info-3tmo7a23/ont_bonito_cuda111.egg-info/requires.txt 2022-02-11T13:55:12,771 writing top-level names to /tmp/pip-pip-egg-info-3tmo7a23/ont_bonito_cuda111.egg-info/top_level.txt 2022-02-11T13:55:12,773 writing dependency_links to /tmp/pip-pip-egg-info-3tmo7a23/ont_bonito_cuda111.egg-info/dependency_links.txt 2022-02-11T13:55:12,777 writing entry points to /tmp/pip-pip-egg-info-3tmo7a23/ont_bonito_cuda111.egg-info/entry_points.txt 2022-02-11T13:55:12,779 writing /tmp/pip-pip-egg-info-3tmo7a23/ont_bonito_cuda111.egg-info/PKG-INFO 2022-02-11T13:55:12,787 writing manifest file '/tmp/pip-pip-egg-info-3tmo7a23/ont_bonito_cuda111.egg-info/SOURCES.txt' 2022-02-11T13:55:13,155 reading manifest file '/tmp/pip-pip-egg-info-3tmo7a23/ont_bonito_cuda111.egg-info/SOURCES.txt' 2022-02-11T13:55:13,158 reading manifest template 'MANIFEST.in' 2022-02-11T13:55:13,173 writing manifest file '/tmp/pip-pip-egg-info-3tmo7a23/ont_bonito_cuda111.egg-info/SOURCES.txt' 2022-02-11T13:55:13,311 Source in /tmp/pip-wheel-tv0vwji2/ont-bonito-cuda111_515ff253ea5a4cc9b0d61b5e791d69ac has version 0.5.1, which satisfies requirement ont-bonito-cuda111==0.5.1 from https://files.pythonhosted.org/packages/73/91/2f55f4b660b61e68bfd934f7c35e57c26ca59c2412af9052811fc0ddd979/ont-bonito-cuda111-0.5.1.tar.gz#sha256=3977cda539ef7130eb3e13a773bf75bb988178882d45f92b173823e36658138a 2022-02-11T13:55:13,313 Removed ont-bonito-cuda111==0.5.1 from https://files.pythonhosted.org/packages/73/91/2f55f4b660b61e68bfd934f7c35e57c26ca59c2412af9052811fc0ddd979/ont-bonito-cuda111-0.5.1.tar.gz#sha256=3977cda539ef7130eb3e13a773bf75bb988178882d45f92b173823e36658138a from build tracker '/tmp/pip-req-tracker-063l08p8' 2022-02-11T13:55:13,323 Created temporary directory: /tmp/pip-unpack-8329eqb5 2022-02-11T13:55:13,324 Building wheels for collected packages: ont-bonito-cuda111 2022-02-11T13:55:13,334 Created temporary directory: /tmp/pip-wheel-ns4o1t5s 2022-02-11T13:55:13,335 Building wheel for ont-bonito-cuda111 (setup.py): started 2022-02-11T13:55:13,335 Destination directory: /tmp/pip-wheel-ns4o1t5s 2022-02-11T13:55:13,336 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-tv0vwji2/ont-bonito-cuda111_515ff253ea5a4cc9b0d61b5e791d69ac/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-tv0vwji2/ont-bonito-cuda111_515ff253ea5a4cc9b0d61b5e791d69ac/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ns4o1t5s 2022-02-11T13:55:15,138 Building with CUDA 111 2022-02-11T13:55:15,720 running bdist_wheel 2022-02-11T13:55:15,732 running build 2022-02-11T13:55:15,732 running build_py 2022-02-11T13:55:16,069 creating build 2022-02-11T13:55:16,070 creating build/lib 2022-02-11T13:55:16,072 creating build/lib/bonito 2022-02-11T13:55:16,075 copying bonito/multiprocessing.py -> build/lib/bonito 2022-02-11T13:55:16,081 copying bonito/util.py -> build/lib/bonito 2022-02-11T13:55:16,086 copying bonito/fast5.py -> build/lib/bonito 2022-02-11T13:55:16,091 copying bonito/__init__.py -> build/lib/bonito 2022-02-11T13:55:16,095 copying bonito/nn.py -> build/lib/bonito 2022-02-11T13:55:16,101 copying bonito/training.py -> build/lib/bonito 2022-02-11T13:55:16,108 copying bonito/io.py -> build/lib/bonito 2022-02-11T13:55:16,116 copying bonito/schedule.py -> build/lib/bonito 2022-02-11T13:55:16,122 copying bonito/mod_util.py -> build/lib/bonito 2022-02-11T13:55:16,127 copying bonito/data.py -> build/lib/bonito 2022-02-11T13:55:16,131 copying bonito/aligner.py -> build/lib/bonito 2022-02-11T13:55:16,136 creating build/lib/bonito/crf 2022-02-11T13:55:16,139 copying bonito/crf/model.py -> build/lib/bonito/crf 2022-02-11T13:55:16,144 copying bonito/crf/basecall.py -> build/lib/bonito/crf 2022-02-11T13:55:16,148 copying bonito/crf/__init__.py -> build/lib/bonito/crf 2022-02-11T13:55:16,153 creating build/lib/bonito/ctc 2022-02-11T13:55:16,156 copying bonito/ctc/model.py -> build/lib/bonito/ctc 2022-02-11T13:55:16,161 copying bonito/ctc/basecall.py -> build/lib/bonito/ctc 2022-02-11T13:55:16,166 copying bonito/ctc/__init__.py -> build/lib/bonito/ctc 2022-02-11T13:55:16,175 creating build/lib/bonito/cli 2022-02-11T13:55:16,178 copying bonito/cli/basecaller.py -> build/lib/bonito/cli 2022-02-11T13:55:16,185 copying bonito/cli/download.py -> build/lib/bonito/cli 2022-02-11T13:55:16,190 copying bonito/cli/train.py -> build/lib/bonito/cli 2022-02-11T13:55:16,195 copying bonito/cli/evaluate.py -> build/lib/bonito/cli 2022-02-11T13:55:16,199 copying bonito/cli/__init__.py -> build/lib/bonito/cli 2022-02-11T13:55:16,202 copying bonito/cli/convert.py -> build/lib/bonito/cli 2022-02-11T13:55:16,207 copying bonito/cli/view.py -> build/lib/bonito/cli 2022-02-11T13:55:16,211 copying bonito/cli/export.py -> build/lib/bonito/cli 2022-02-11T13:55:16,216 copying bonito/cli/duplex.py -> build/lib/bonito/cli 2022-02-11T13:55:16,220 running egg_info 2022-02-11T13:55:16,251 writing requirements to ont_bonito_cuda111.egg-info/requires.txt 2022-02-11T13:55:16,254 writing dependency_links to ont_bonito_cuda111.egg-info/dependency_links.txt 2022-02-11T13:55:16,257 writing ont_bonito_cuda111.egg-info/PKG-INFO 2022-02-11T13:55:16,262 writing top-level names to ont_bonito_cuda111.egg-info/top_level.txt 2022-02-11T13:55:16,264 writing entry points to ont_bonito_cuda111.egg-info/entry_points.txt 2022-02-11T13:55:16,278 reading manifest file 'ont_bonito_cuda111.egg-info/SOURCES.txt' 2022-02-11T13:55:16,285 reading manifest template 'MANIFEST.in' 2022-02-11T13:55:16,301 writing manifest file 'ont_bonito_cuda111.egg-info/SOURCES.txt' 2022-02-11T13:55:16,306 creating build/lib/bonito/data 2022-02-11T13:55:16,308 copying bonito/data/README.md -> build/lib/bonito/data 2022-02-11T13:55:16,313 creating build/lib/bonito/models 2022-02-11T13:55:16,315 copying bonito/models/README.md -> build/lib/bonito/models 2022-02-11T13:55:16,320 creating build/lib/bonito/models/configs 2022-02-11T13:55:16,322 copying bonito/models/configs/dna_r9.4.1@v1.toml -> build/lib/bonito/models/configs 2022-02-11T13:55:16,327 copying bonito/models/configs/dna_r9.4.1@v2.toml -> build/lib/bonito/models/configs 2022-02-11T13:55:16,333 copying bonito/models/configs/dna_r9.4.1@v3.toml -> build/lib/bonito/models/configs 2022-02-11T13:55:16,353 installing to build/bdist.linux-armv7l/wheel 2022-02-11T13:55:16,354 running install 2022-02-11T13:55:16,357 running install_lib 2022-02-11T13:55:16,365 creating build/bdist.linux-armv7l 2022-02-11T13:55:16,366 creating build/bdist.linux-armv7l/wheel 2022-02-11T13:55:16,370 creating build/bdist.linux-armv7l/wheel/bonito 2022-02-11T13:55:16,373 creating build/bdist.linux-armv7l/wheel/bonito/crf 2022-02-11T13:55:16,375 copying build/lib/bonito/crf/model.py -> build/bdist.linux-armv7l/wheel/bonito/crf 2022-02-11T13:55:16,381 copying build/lib/bonito/crf/basecall.py -> build/bdist.linux-armv7l/wheel/bonito/crf 2022-02-11T13:55:16,385 copying build/lib/bonito/crf/__init__.py -> build/bdist.linux-armv7l/wheel/bonito/crf 2022-02-11T13:55:16,389 copying build/lib/bonito/multiprocessing.py -> build/bdist.linux-armv7l/wheel/bonito 2022-02-11T13:55:16,394 copying build/lib/bonito/util.py -> build/bdist.linux-armv7l/wheel/bonito 2022-02-11T13:55:16,401 copying build/lib/bonito/fast5.py -> build/bdist.linux-armv7l/wheel/bonito 2022-02-11T13:55:16,410 creating build/bdist.linux-armv7l/wheel/bonito/ctc 2022-02-11T13:55:16,412 copying build/lib/bonito/ctc/model.py -> build/bdist.linux-armv7l/wheel/bonito/ctc 2022-02-11T13:55:16,418 copying build/lib/bonito/ctc/basecall.py -> build/bdist.linux-armv7l/wheel/bonito/ctc 2022-02-11T13:55:16,422 copying build/lib/bonito/ctc/__init__.py -> build/bdist.linux-armv7l/wheel/bonito/ctc 2022-02-11T13:55:16,426 copying build/lib/bonito/__init__.py -> build/bdist.linux-armv7l/wheel/bonito 2022-02-11T13:55:16,431 creating build/bdist.linux-armv7l/wheel/bonito/data 2022-02-11T13:55:16,433 copying build/lib/bonito/data/README.md -> build/bdist.linux-armv7l/wheel/bonito/data 2022-02-11T13:55:16,439 copying build/lib/bonito/nn.py -> build/bdist.linux-armv7l/wheel/bonito 2022-02-11T13:55:16,445 copying build/lib/bonito/training.py -> build/bdist.linux-armv7l/wheel/bonito 2022-02-11T13:55:16,452 copying build/lib/bonito/io.py -> build/bdist.linux-armv7l/wheel/bonito 2022-02-11T13:55:16,460 creating build/bdist.linux-armv7l/wheel/bonito/models 2022-02-11T13:55:16,462 copying build/lib/bonito/models/README.md -> build/bdist.linux-armv7l/wheel/bonito/models 2022-02-11T13:55:16,467 creating build/bdist.linux-armv7l/wheel/bonito/models/configs 2022-02-11T13:55:16,469 copying build/lib/bonito/models/configs/dna_r9.4.1@v3.toml -> build/bdist.linux-armv7l/wheel/bonito/models/configs 2022-02-11T13:55:16,473 copying build/lib/bonito/models/configs/dna_r9.4.1@v2.toml -> build/bdist.linux-armv7l/wheel/bonito/models/configs 2022-02-11T13:55:16,478 copying build/lib/bonito/models/configs/dna_r9.4.1@v1.toml -> build/bdist.linux-armv7l/wheel/bonito/models/configs 2022-02-11T13:55:16,486 creating build/bdist.linux-armv7l/wheel/bonito/cli 2022-02-11T13:55:16,488 copying build/lib/bonito/cli/basecaller.py -> build/bdist.linux-armv7l/wheel/bonito/cli 2022-02-11T13:55:16,495 copying build/lib/bonito/cli/download.py -> build/bdist.linux-armv7l/wheel/bonito/cli 2022-02-11T13:55:16,500 copying build/lib/bonito/cli/train.py -> build/bdist.linux-armv7l/wheel/bonito/cli 2022-02-11T13:55:16,505 copying build/lib/bonito/cli/evaluate.py -> build/bdist.linux-armv7l/wheel/bonito/cli 2022-02-11T13:55:16,509 copying build/lib/bonito/cli/__init__.py -> build/bdist.linux-armv7l/wheel/bonito/cli 2022-02-11T13:55:16,513 copying build/lib/bonito/cli/convert.py -> build/bdist.linux-armv7l/wheel/bonito/cli 2022-02-11T13:55:16,519 copying build/lib/bonito/cli/view.py -> build/bdist.linux-armv7l/wheel/bonito/cli 2022-02-11T13:55:16,524 copying build/lib/bonito/cli/export.py -> build/bdist.linux-armv7l/wheel/bonito/cli 2022-02-11T13:55:16,530 copying build/lib/bonito/cli/duplex.py -> build/bdist.linux-armv7l/wheel/bonito/cli 2022-02-11T13:55:16,537 copying build/lib/bonito/schedule.py -> build/bdist.linux-armv7l/wheel/bonito 2022-02-11T13:55:16,542 copying build/lib/bonito/mod_util.py -> build/bdist.linux-armv7l/wheel/bonito 2022-02-11T13:55:16,546 copying build/lib/bonito/data.py -> build/bdist.linux-armv7l/wheel/bonito 2022-02-11T13:55:16,551 copying build/lib/bonito/aligner.py -> build/bdist.linux-armv7l/wheel/bonito 2022-02-11T13:55:16,554 running install_egg_info 2022-02-11T13:55:16,572 Copying ont_bonito_cuda111.egg-info to build/bdist.linux-armv7l/wheel/ont_bonito_cuda111-0.5.1-py3.5.egg-info 2022-02-11T13:55:16,609 running install_scripts 2022-02-11T13:55:16,857 creating build/bdist.linux-armv7l/wheel/ont_bonito_cuda111-0.5.1.dist-info/WHEEL 2022-02-11T13:55:17,214 Building wheel for ont-bonito-cuda111 (setup.py): finished with status 'done' 2022-02-11T13:55:17,219 Created wheel for ont-bonito-cuda111: filename=ont_bonito_cuda111-0.5.1-py3-none-any.whl size=54081 sha256=afddc1337c8bc21fd69ae9479da2c8b0cef796a55a0a405d944c23c8e3b390e9 2022-02-11T13:55:17,220 Stored in directory: /tmp/pip-ephem-wheel-cache-kwmak599/wheels/38/87/92/d25ad5ae87b9c8c13506cdadf06867d2b497426e86a2ea1d66 2022-02-11T13:55:17,242 Successfully built ont-bonito-cuda111 2022-02-11T13:55:17,256 Removed build tracker: '/tmp/pip-req-tracker-063l08p8'