2022-02-11T16:10:58,605 Created temporary directory: /tmp/pip-ephem-wheel-cache-g4fls84s 2022-02-11T16:10:58,610 Created temporary directory: /tmp/pip-req-tracker-qgttyo0x 2022-02-11T16:10:58,611 Initialized build tracking at /tmp/pip-req-tracker-qgttyo0x 2022-02-11T16:10:58,611 Created build tracker: /tmp/pip-req-tracker-qgttyo0x 2022-02-11T16:10:58,612 Entered build tracker: /tmp/pip-req-tracker-qgttyo0x 2022-02-11T16:10:58,613 Created temporary directory: /tmp/pip-wheel-sjk4fg9d 2022-02-11T16:10:58,677 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-02-11T16:10:58,683 2 location(s) to search for versions of psmpa: 2022-02-11T16:10:58,683 * https://pypi.org/simple/psmpa/ 2022-02-11T16:10:58,683 * https://www.piwheels.org/simple/psmpa/ 2022-02-11T16:10:58,684 Fetching project page and analyzing links: https://pypi.org/simple/psmpa/ 2022-02-11T16:10:58,685 Getting page https://pypi.org/simple/psmpa/ 2022-02-11T16:10:58,689 Found index url https://pypi.org/simple 2022-02-11T16:10:58,905 Skipping link: No binaries permitted for psmpa: https://files.pythonhosted.org/packages/53/e5/70d2de6612aa9532e338c591f74e25ce2ed11bbce7888cab26f99fe2747e/psmpa-1.0.0-py3-none-any.whl#sha256=19a1019c2cd29c943f32a1e6616e2a4fa46a3decefdf8449b8777abb9c352c96 (from https://pypi.org/simple/psmpa/) (requires-python:>=3.8) 2022-02-11T16:10:58,907 Found link https://files.pythonhosted.org/packages/94/c0/048da2f6cc8acb2fa45585b42adf9c959ecc64485cb846c608298b39a32a/psmpa-1.0.0.tar.gz#sha256=a38f5982efaa60a4f4a09fd086217142d913e539f70522063761a8778d70af11 (from https://pypi.org/simple/psmpa/) (requires-python:>=3.8), version: 1.0.0 2022-02-11T16:10:58,908 Fetching project page and analyzing links: https://www.piwheels.org/simple/psmpa/ 2022-02-11T16:10:58,908 Getting page https://www.piwheels.org/simple/psmpa/ 2022-02-11T16:10:58,910 Found index url https://www.piwheels.org/simple 2022-02-11T16:10:59,250 Skipping link: not a file: https://www.piwheels.org/simple/psmpa/ 2022-02-11T16:10:59,251 Skipping link: not a file: https://pypi.org/simple/psmpa/ 2022-02-11T16:10:59,295 Given no hashes to check 1 links for project 'psmpa': discarding no candidates 2022-02-11T16:10:59,338 Collecting psmpa==1.0.0 2022-02-11T16:10:59,341 Created temporary directory: /tmp/pip-unpack-j3diie0q 2022-02-11T16:11:00,438 Downloading psmpa-1.0.0.tar.gz (19.3 MB) 2022-02-11T16:11:10,313 Added psmpa==1.0.0 from https://files.pythonhosted.org/packages/94/c0/048da2f6cc8acb2fa45585b42adf9c959ecc64485cb846c608298b39a32a/psmpa-1.0.0.tar.gz#sha256=a38f5982efaa60a4f4a09fd086217142d913e539f70522063761a8778d70af11 to build tracker '/tmp/pip-req-tracker-qgttyo0x' 2022-02-11T16:11:10,322 Created temporary directory: /tmp/pip-build-env-0cyjev2c 2022-02-11T16:11:10,344 Created temporary directory: /tmp/pip-standalone-pip-7q8quoms 2022-02-11T16:11:12,135 Installing build dependencies: started 2022-02-11T16:11:12,136 Running command /usr/bin/python3 /tmp/pip-standalone-pip-7q8quoms/__env_pip__.zip/pip install --ignore-installed --no-user --prefix /tmp/pip-build-env-0cyjev2c/overlay --no-warn-script-location -v --no-binary psmpa --only-binary :none: -i https://pypi.org/simple --extra-index-url https://www.piwheels.org/simple --prefer-binary -- 'setuptools>=42' wheel 2022-02-11T16:11:21,175 Using pip 21.3.1 from /tmp/pip-standalone-pip-7q8quoms/__env_pip__.zip/pip (python 3.9) 2022-02-11T16:11:22,015 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-02-11T16:11:27,015 Collecting setuptools>=42 2022-02-11T16:11:27,262 Using cached https://www.piwheels.org/simple/setuptools/setuptools-60.8.2-py3-none-any.whl (1.1 MB) 2022-02-11T16:11:28,008 Collecting wheel 2022-02-11T16:11:28,045 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-02-11T16:11:31,359 Installing collected packages: wheel, setuptools 2022-02-11T16:11:31,635 Creating /tmp/pip-build-env-0cyjev2c/overlay/bin 2022-02-11T16:11:31,638 changing mode of /tmp/pip-build-env-0cyjev2c/overlay/bin/wheel to 755 2022-02-11T16:11:35,773 Successfully installed setuptools-60.8.2 wheel-0.37.1 2022-02-11T16:11:35,949 WARNING: You are using pip version 21.3.1; however, version 22.0.3 is available. 2022-02-11T16:11:35,949 You should consider upgrading via the '/usr/bin/python3 -m pip install --upgrade pip' command. 2022-02-11T16:11:36,356 Installing build dependencies: finished with status 'done' 2022-02-11T16:11:36,377 Getting requirements to build wheel: started 2022-02-11T16:11:36,378 Running command /usr/bin/python3 /usr/local/lib/python3.9/dist-packages/pip/_vendor/pep517/in_process/_in_process.py get_requires_for_build_wheel /tmp/tmps2nlsy3r 2022-02-11T16:11:38,064 running egg_info 2022-02-11T16:11:38,140 writing manifest file 'psmpa.egg-info/SOURCES.txt' 2022-02-11T16:11:38,260 Getting requirements to build wheel: finished with status 'done' 2022-02-11T16:11:38,277 Created temporary directory: /tmp/pip-modern-metadata-img1ka0z 2022-02-11T16:11:38,283 Preparing metadata (pyproject.toml): started 2022-02-11T16:11:38,284 Running command /usr/bin/python3 /usr/local/lib/python3.9/dist-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /tmp/tmpsfzi20n_ 2022-02-11T16:11:39,884 running dist_info 2022-02-11T16:11:39,913 creating /tmp/pip-modern-metadata-img1ka0z/psmpa.egg-info 2022-02-11T16:11:39,924 writing manifest file '/tmp/pip-modern-metadata-img1ka0z/psmpa.egg-info/SOURCES.txt' 2022-02-11T16:11:39,974 writing manifest file '/tmp/pip-modern-metadata-img1ka0z/psmpa.egg-info/SOURCES.txt' 2022-02-11T16:11:40,223 Preparing metadata (pyproject.toml): finished with status 'done' 2022-02-11T16:11:40,234 Source in /tmp/pip-wheel-sjk4fg9d/psmpa_7838e7ba6cb1441fb88d83a0c99b32e0 has version 1.0.0, which satisfies requirement psmpa==1.0.0 from https://files.pythonhosted.org/packages/94/c0/048da2f6cc8acb2fa45585b42adf9c959ecc64485cb846c608298b39a32a/psmpa-1.0.0.tar.gz#sha256=a38f5982efaa60a4f4a09fd086217142d913e539f70522063761a8778d70af11 2022-02-11T16:11:40,236 Removed psmpa==1.0.0 from https://files.pythonhosted.org/packages/94/c0/048da2f6cc8acb2fa45585b42adf9c959ecc64485cb846c608298b39a32a/psmpa-1.0.0.tar.gz#sha256=a38f5982efaa60a4f4a09fd086217142d913e539f70522063761a8778d70af11 from build tracker '/tmp/pip-req-tracker-qgttyo0x' 2022-02-11T16:11:40,249 Created temporary directory: /tmp/pip-unpack-ojro_3ka 2022-02-11T16:11:40,250 Building wheels for collected packages: psmpa 2022-02-11T16:11:40,261 Created temporary directory: /tmp/pip-wheel-vw84bo11 2022-02-11T16:11:40,262 Destination directory: /tmp/pip-wheel-vw84bo11 2022-02-11T16:11:40,267 Building wheel for psmpa (pyproject.toml): started 2022-02-11T16:11:40,267 Running command /usr/bin/python3 /usr/local/lib/python3.9/dist-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmp6irnt1sy 2022-02-11T16:11:41,958 running bdist_wheel 2022-02-11T16:11:42,368 running build 2022-02-11T16:11:42,368 running build_py 2022-02-11T16:11:42,376 creating build 2022-02-11T16:11:42,377 creating build/lib 2022-02-11T16:11:42,378 creating build/lib/psmpa 2022-02-11T16:11:42,380 copying psmpa/pipeline.py -> build/lib/psmpa 2022-02-11T16:11:42,384 copying psmpa/default.py -> build/lib/psmpa 2022-02-11T16:11:42,387 copying psmpa/util.py -> build/lib/psmpa 2022-02-11T16:11:42,392 copying psmpa/place_seqs.py -> build/lib/psmpa 2022-02-11T16:11:42,397 copying psmpa/__init__.py -> build/lib/psmpa 2022-02-11T16:11:42,399 copying psmpa/psmpa2_pipeline.py -> build/lib/psmpa 2022-02-11T16:11:42,404 copying psmpa/wrap_hsp.py -> build/lib/psmpa 2022-02-11T16:11:42,407 running egg_info 2022-02-11T16:11:42,471 writing manifest file 'psmpa.egg-info/SOURCES.txt' 2022-02-11T16:11:42,484 creating build/lib/psmpa/Rscripts 2022-02-11T16:11:42,486 copying psmpa/Rscripts/castor_hsp.R -> build/lib/psmpa/Rscripts 2022-02-11T16:11:42,491 copying psmpa/Rscripts/castor_nsti.R -> build/lib/psmpa/Rscripts 2022-02-11T16:11:42,494 creating build/lib/psmpa/default_files 2022-02-11T16:11:42,495 creating build/lib/psmpa/default_files/bacteria 2022-02-11T16:11:42,496 copying psmpa/default_files/bacteria/BGCs.txt.gz -> build/lib/psmpa/default_files/bacteria 2022-02-11T16:11:42,524 creating build/lib/psmpa/default_files/bacteria/pro_ref 2022-02-11T16:11:42,525 copying psmpa/default_files/bacteria/pro_ref/pro_ref.fna -> build/lib/psmpa/default_files/bacteria/pro_ref 2022-02-11T16:11:43,235 copying psmpa/default_files/bacteria/pro_ref/pro_ref.hmm -> build/lib/psmpa/default_files/bacteria/pro_ref 2022-02-11T16:11:43,254 copying psmpa/default_files/bacteria/pro_ref/pro_ref.model -> build/lib/psmpa/default_files/bacteria/pro_ref 2022-02-11T16:11:43,258 copying psmpa/default_files/bacteria/pro_ref/pro_ref.raxml_info -> build/lib/psmpa/default_files/bacteria/pro_ref 2022-02-11T16:11:43,262 copying psmpa/default_files/bacteria/pro_ref/pro_ref.tre -> build/lib/psmpa/default_files/bacteria/pro_ref 2022-02-11T16:11:43,289 creating build/lib/psmpa/default_files/psmpa2 2022-02-11T16:11:43,290 copying psmpa/default_files/psmpa2/psmpa2_database_lineage.tsv.gz -> build/lib/psmpa/default_files/psmpa2 2022-02-11T16:11:43,328 copying psmpa/default_files/psmpa2/psmpa2_database_mean_float.tsv.gz -> build/lib/psmpa/default_files/psmpa2 2022-02-11T16:11:43,389 copying psmpa/default_files/psmpa2/psmpa2_database_mean_int.tsv.gz -> build/lib/psmpa/default_files/psmpa2 2022-02-11T16:11:43,450 copying psmpa/default_files/psmpa2/psmpa2_database_median_float.tsv.gz -> build/lib/psmpa/default_files/psmpa2 2022-02-11T16:11:43,516 copying psmpa/default_files/psmpa2/psmpa2_database_median_int.tsv.gz -> build/lib/psmpa/default_files/psmpa2 2022-02-11T16:11:43,580 creating build/lib/psmpa/default_files/psmpa2/database 2022-02-11T16:11:43,581 copying psmpa/default_files/psmpa2/database/rna.ndb -> build/lib/psmpa/default_files/psmpa2/database 2022-02-11T16:11:43,788 copying psmpa/default_files/psmpa2/database/rna.nhr -> build/lib/psmpa/default_files/psmpa2/database 2022-02-11T16:11:43,971 copying psmpa/default_files/psmpa2/database/rna.nin -> build/lib/psmpa/default_files/psmpa2/database 2022-02-11T16:11:44,022 copying psmpa/default_files/psmpa2/database/rna.nog -> build/lib/psmpa/default_files/psmpa2/database 2022-02-11T16:11:44,043 copying psmpa/default_files/psmpa2/database/rna.nos -> build/lib/psmpa/default_files/psmpa2/database 2022-02-11T16:11:44,123 copying psmpa/default_files/psmpa2/database/rna.not -> build/lib/psmpa/default_files/psmpa2/database 2022-02-11T16:11:44,176 copying psmpa/default_files/psmpa2/database/rna.nsd -> build/lib/psmpa/default_files/psmpa2/database 2022-02-11T16:11:44,335 copying psmpa/default_files/psmpa2/database/rna.nsi -> build/lib/psmpa/default_files/psmpa2/database 2022-02-11T16:11:44,343 copying psmpa/default_files/psmpa2/database/rna.nsq -> build/lib/psmpa/default_files/psmpa2/database 2022-02-11T16:11:45,319 copying psmpa/default_files/psmpa2/database/rna.ntf -> build/lib/psmpa/default_files/psmpa2/database 2022-02-11T16:11:45,325 copying psmpa/default_files/psmpa2/database/rna.nto -> build/lib/psmpa/default_files/psmpa2/database 2022-02-11T16:11:45,345 running build_scripts 2022-02-11T16:11:45,346 creating build/scripts-3.9 2022-02-11T16:11:45,371 running install 2022-02-11T16:11:45,432 running install_lib 2022-02-11T16:11:45,439 creating build/bdist.linux-armv7l 2022-02-11T16:11:45,440 creating build/bdist.linux-armv7l/wheel 2022-02-11T16:11:45,443 creating build/bdist.linux-armv7l/wheel/psmpa 2022-02-11T16:11:45,450 creating build/bdist.linux-armv7l/wheel/psmpa/Rscripts 2022-02-11T16:11:45,465 creating build/bdist.linux-armv7l/wheel/psmpa/default_files 2022-02-11T16:11:45,467 creating build/bdist.linux-armv7l/wheel/psmpa/default_files/bacteria 2022-02-11T16:11:45,498 creating build/bdist.linux-armv7l/wheel/psmpa/default_files/bacteria/pro_ref 2022-02-11T16:11:46,479 creating build/bdist.linux-armv7l/wheel/psmpa/default_files/psmpa2 2022-02-11T16:11:46,641 creating build/bdist.linux-armv7l/wheel/psmpa/default_files/psmpa2/database 2022-02-11T16:11:48,785 running install_egg_info 2022-02-11T16:11:48,799 Copying psmpa.egg-info to build/bdist.linux-armv7l/wheel/psmpa-1.0.0-py3.9.egg-info 2022-02-11T16:11:48,816 running install_scripts 2022-02-11T16:11:48,952 creating build/bdist.linux-armv7l/wheel/psmpa-1.0.0.data 2022-02-11T16:11:48,953 creating build/bdist.linux-armv7l/wheel/psmpa-1.0.0.data/scripts 2022-02-11T16:12:12,426 Building wheel for psmpa (pyproject.toml): finished with status 'done' 2022-02-11T16:12:13,553 Created wheel for psmpa: filename=psmpa-1.0.0-py3-none-any.whl size=19776838 sha256=16219933cedd6ffce00731da9a9576f23b0803b254555a974d8c78fc8076e9fb 2022-02-11T16:12:13,554 Stored in directory: /tmp/pip-ephem-wheel-cache-g4fls84s/wheels/44/98/8a/6d9a76b3b00b3de672523470f6da9f9bd10d131f119ba9c272 2022-02-11T16:12:13,602 Successfully built psmpa 2022-02-11T16:12:15,067 Removed build tracker: '/tmp/pip-req-tracker-qgttyo0x'