2022-02-14T12:48:13,112 Created temporary directory: /tmp/pip-ephem-wheel-cache-68yilfrs
2022-02-14T12:48:13,118 Created temporary directory: /tmp/pip-req-tracker-n7g_nuds
2022-02-14T12:48:13,119 Initialized build tracking at /tmp/pip-req-tracker-n7g_nuds
2022-02-14T12:48:13,120 Created build tracker: /tmp/pip-req-tracker-n7g_nuds
2022-02-14T12:48:13,120 Entered build tracker: /tmp/pip-req-tracker-n7g_nuds
2022-02-14T12:48:13,121 Created temporary directory: /tmp/pip-wheel-my7j6guc
2022-02-14T12:48:13,196 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-02-14T12:48:13,200 2 location(s) to search for versions of pele-platform:
2022-02-14T12:48:13,200 * https://pypi.org/simple/pele-platform/
2022-02-14T12:48:13,200 * https://www.piwheels.org/simple/pele-platform/
2022-02-14T12:48:13,200 Fetching project page and analyzing links: https://pypi.org/simple/pele-platform/
2022-02-14T12:48:13,203 Getting page https://pypi.org/simple/pele-platform/
2022-02-14T12:48:13,207 Found index url https://pypi.org/simple
2022-02-14T12:48:13,567   Found link https://files.pythonhosted.org/packages/f0/ac/9497572d7da4e501c8dddc3be3fa338744dbc27b67eb09275b8375fae2fd/pele_platform-1.0.0.1.tar.gz#sha256=e3c8bde654fe3d249714c4ddb1d3471944752f6840a6bcf4b399a3466931b838 (from https://pypi.org/simple/pele-platform/), version: 1.0.0.1
2022-02-14T12:48:13,569   Found link https://files.pythonhosted.org/packages/79/a0/d1b4b9269c3fe9dd2edc878a2dec9d3f4e7701cc932272169f44a025c2a9/pele_platform-1.0.0.2.tar.gz#sha256=919f487c943e6e71a8d82e56dac3051605ffdc6a680d168b5233cea95c9e4701 (from https://pypi.org/simple/pele-platform/), version: 1.0.0.2
2022-02-14T12:48:13,569   Found link https://files.pythonhosted.org/packages/a3/56/3cc9eb3b0ecf0943c4f4eb5b0729cd54906290f84dc4cfb230ad69ce99c6/pele_platform-1.0.0.3.tar.gz#sha256=ea4f3df0aeb65812e72eb9b24605146a7afeeb7f89ce7f769058c2e894654239 (from https://pypi.org/simple/pele-platform/), version: 1.0.0.3
2022-02-14T12:48:13,570   Found link https://files.pythonhosted.org/packages/d0/6d/1ac79163749b10c7f694dde1db24063d4e2f57bcf365db1b8cfa1b9f7f57/pele_platform-1.1.0.tar.gz#sha256=25a644fc27c0c364bfece9addd278a74a5a7ea5f4ab40b31fa8cd961e7485a65 (from https://pypi.org/simple/pele-platform/), version: 1.1.0
2022-02-14T12:48:13,571   Found link https://files.pythonhosted.org/packages/fd/15/306ea35b1d4be507caf1613d05fc16c076f070c2a16e6283a331695fcb5e/pele_platform-1.2.0.tar.gz#sha256=2967a976bafc47884ca49864ca87d40d87aa50c2fc57900c1f0517e84e789153 (from https://pypi.org/simple/pele-platform/), version: 1.2.0
2022-02-14T12:48:13,572   Found link https://files.pythonhosted.org/packages/74/98/cf2442f668f8ad6be1838c3ce7b87a409eee7448a1d7d033862ad0bda36c/pele_platform-1.2.1.tar.gz#sha256=5d30d563960934362ac79eb7a24b8f4b831076dba29bbb498901a0b0a1dca367 (from https://pypi.org/simple/pele-platform/), version: 1.2.1
2022-02-14T12:48:13,573   Found link https://files.pythonhosted.org/packages/1a/78/29b2eb73308b595668a9c22abd93ac88f82c49ebc6b004f332a774166391/pele_platform-1.2.2.tar.gz#sha256=00f579740db5455cea04c82e86b87c8f53045496ba61d9f4e96436f1d0cdfb08 (from https://pypi.org/simple/pele-platform/), version: 1.2.2
2022-02-14T12:48:13,574   Found link https://files.pythonhosted.org/packages/fb/6b/85f262d33a080377ea5202d5779c9402c23aaefc4e1b04bb94d9432aad42/pele_platform-1.2.3.tar.gz#sha256=18713b6811d7689accb54dde5429aa5225dcb8e520164fd7b4037453c63f74d9 (from https://pypi.org/simple/pele-platform/), version: 1.2.3
2022-02-14T12:48:13,575   Found link https://files.pythonhosted.org/packages/d5/15/707e6b89f0ee479d173ef2fe6a41af1ff9d91dd86e45067da5cee56761d9/pele_platform-1.3.0.tar.gz#sha256=fb7fb5dd59f9e3a76d371be6aa0b013209752c464862bf944de6b2a2903424a9 (from https://pypi.org/simple/pele-platform/), version: 1.3.0
2022-02-14T12:48:13,576   Found link https://files.pythonhosted.org/packages/7c/b0/4fda3001d5f13010bc2005e335f799f24d2204fc700a847e28091b57fabb/pele_platform-1.3.1.tar.gz#sha256=c6c0ac764ae30ce8a0650cdf0fc686fd733cb6b11fc15e6cccd5659166be3b33 (from https://pypi.org/simple/pele-platform/), version: 1.3.1
2022-02-14T12:48:13,577   Found link https://files.pythonhosted.org/packages/34/21/2f68d91d200432e0feb4662f6ba5538817335d86df60688e3a6f050dd21b/pele_platform-1.3.2.tar.gz#sha256=14c6e236347a1101f5de04bc25a32f302904bdb46326fb151c14e930a28d7a48 (from https://pypi.org/simple/pele-platform/), version: 1.3.2
2022-02-14T12:48:13,578   Found link https://files.pythonhosted.org/packages/63/a6/ad0bc781b4089093fd8aca4d75d237e0c0ae9d1f6b7e4b86a733f5a91b10/pele_platform-1.3.3.tar.gz#sha256=9e9e49d359bde42485b1c2d23b8a80c3de43064a672c260d18b9f10b55ee666e (from https://pypi.org/simple/pele-platform/), version: 1.3.3
2022-02-14T12:48:13,579   Found link https://files.pythonhosted.org/packages/e7/6a/4d8e75e0dbff74b22c76f4640a72798acfe6f55e35dcf0e9080dc8f36857/pele_platform-1.3.4.tar.gz#sha256=b8f7a2caac267df0381e8a3d73ddfeaec60cccc22336aa76178dbf3d2b2e880b (from https://pypi.org/simple/pele-platform/), version: 1.3.4
2022-02-14T12:48:13,580   Found link https://files.pythonhosted.org/packages/d2/7d/8f6c7c977288ed554723c003a885c118889c3bf76ac343961a84d330f85e/pele_platform-1.4.0.tar.gz#sha256=0190af77e0e24482742b634d120ac9b52135716bbbc93929bf688313f63e4a59 (from https://pypi.org/simple/pele-platform/), version: 1.4.0
2022-02-14T12:48:13,581   Found link https://files.pythonhosted.org/packages/ed/11/ff7cdcb7a17869082a94fc4c066a8bc6407a07f7c542c1dbc4919b1e091a/pele_platform-1.4.1.tar.gz#sha256=2f5327616aeff5be40d54b2771fd43b8cdb75086944c11800339bd44e0866c01 (from https://pypi.org/simple/pele-platform/), version: 1.4.1
2022-02-14T12:48:13,581   Found link https://files.pythonhosted.org/packages/4b/4f/fec23d74e8b1474fe25234fd34972a427234307dc9f7908f916e50036d81/pele_platform-1.4.2.tar.gz#sha256=c1092fb5c5cdb38736f621c434ff3112ea1cd1abc94d0bfe03ea7044b6e06612 (from https://pypi.org/simple/pele-platform/), version: 1.4.2
2022-02-14T12:48:13,582   Found link https://files.pythonhosted.org/packages/7a/b3/8eeb8c773a4fbf6561a929b8bab563f31384a0512a4708b4d0249ebc8c24/pele_platform-1.4.3.tar.gz#sha256=e491ac06c05301a846084e07ab709abf4b0507768710256443b6523b25339c40 (from https://pypi.org/simple/pele-platform/), version: 1.4.3
2022-02-14T12:48:13,583   Found link https://files.pythonhosted.org/packages/92/57/ff446766add00995f3fa0446f9c32ad52b759bab05d3f41e5ee51a8e76a8/pele_platform-1.4.4.tar.gz#sha256=eca94d45d76664106cff9915781740932635878b203b430d62f7aeb252ce59c7 (from https://pypi.org/simple/pele-platform/), version: 1.4.4
2022-02-14T12:48:13,585   Found link https://files.pythonhosted.org/packages/6d/f3/5ad1c5dab958edc8ecfb75883f8ac760308e570f3a0929104ba01a223f02/pele_platform-1.5.0.tar.gz#sha256=0b7eed2abd70f20caadcf9e9c8642cfc51d55d66ab114e42f0d425bfb6603323 (from https://pypi.org/simple/pele-platform/), version: 1.5.0
2022-02-14T12:48:13,586   Found link https://files.pythonhosted.org/packages/1c/b0/44dcc5184b218a7481babe8cd5738129741e29422e226308a583a3dd5629/pele_platform-1.5.1.tar.gz#sha256=9e138403c8fb65450d9841db279140f046a8325791af9983e202c9002bf44b93 (from https://pypi.org/simple/pele-platform/), version: 1.5.1
2022-02-14T12:48:13,587   Found link https://files.pythonhosted.org/packages/05/85/4cfdad270ebf569727204cbc9de66f22ef802d5079846f2631e1e6a11059/pele_platform-1.6.0b1.tar.gz#sha256=a7b5e566ec00598a1991d44c8748267104e5a123f462365a584632c94b36a7bf (from https://pypi.org/simple/pele-platform/), version: 1.6.0b1
2022-02-14T12:48:13,588   Found link https://files.pythonhosted.org/packages/c0/d6/f49f102325943cd3a82086e4740dfabd416c278d21ef9f3097fc1bb0ba7a/pele_platform-1.6.0b2.tar.gz#sha256=6bf2be383e50f6654f49f87e44dfc548f2aa1f5f002b25089ae2089ab0a92654 (from https://pypi.org/simple/pele-platform/), version: 1.6.0b2
2022-02-14T12:48:13,588   Found link https://files.pythonhosted.org/packages/f7/16/8db67212a622716e71ea8a9664e4da6207ae136369f2d1b3b802ca39baee/pele_platform-1.6.0b3.tar.gz#sha256=916a0f278c53e5eec786008a498654481c2e76b90b4385e75398872fd28b1f6e (from https://pypi.org/simple/pele-platform/), version: 1.6.0b3
2022-02-14T12:48:13,589   Found link https://files.pythonhosted.org/packages/f3/46/ecebcaed96148f710c2aa716f1a4862033073dfe8c1da1c7283d32b766b4/pele_platform-1.6.0b4.tar.gz#sha256=1e6cdaab94470fa0de99010c2e51ed94e1634b14c9a53206b6f33e838616b361 (from https://pypi.org/simple/pele-platform/), version: 1.6.0b4
2022-02-14T12:48:13,590   Found link https://files.pythonhosted.org/packages/7a/03/3f391e98e553a1cea233c87fe3d33171be5b3851fbf37869ccdfebca58c4/pele_platform-1.6.0b5.tar.gz#sha256=9e98fe723a6e9b2d67e7c95441f23bc98f550d4d824a47614981b39643e4781d (from https://pypi.org/simple/pele-platform/), version: 1.6.0b5
2022-02-14T12:48:13,591   Found link https://files.pythonhosted.org/packages/e1/28/b31c1b1b3daf0bc65f6c3d09cad23ec355868feb94787f0adc4407c60364/pele_platform-1.6.0b6.tar.gz#sha256=63327ad61bcbfa4e69c138e5ec38621194b929c5e271b21d01c359961fd8e805 (from https://pypi.org/simple/pele-platform/), version: 1.6.0b6
2022-02-14T12:48:13,592   Found link https://files.pythonhosted.org/packages/3c/b6/8ebb9f0d293a32db481b1bd6e620d5b04e73b2bf516bcedbd22033f16016/pele_platform-1.6.0b7.tar.gz#sha256=e5e3a57d5eb74bf3f664714017549f773f71f325da381666f8f872c38c12d06e (from https://pypi.org/simple/pele-platform/), version: 1.6.0b7
2022-02-14T12:48:13,593   Found link https://files.pythonhosted.org/packages/bf/83/ff52f07ec4bc23a134b0fcb5ea792d20ee925939a73bc0a2cc867e47378c/pele_platform-1.6.0rc1.tar.gz#sha256=34a396a464e091c199e16e4d7fdce545eb8e1acde49096d61f5c5f04a220b1d7 (from https://pypi.org/simple/pele-platform/), version: 1.6.0rc1
2022-02-14T12:48:13,594   Found link https://files.pythonhosted.org/packages/43/3a/60b79f3dae3de9b5568620f8d2bf4fc3d2a80a2bf055d2699f962b5cdd27/pele_platform-1.6.0rc2.tar.gz#sha256=1056394184b738486172547f015fa65ca7830cec5605bb99c86741908b3db07a (from https://pypi.org/simple/pele-platform/), version: 1.6.0rc2
2022-02-14T12:48:13,595   Found link https://files.pythonhosted.org/packages/27/be/a3c190f0a24fc9e18c3cd0ba2a328e597ee96e6722081e796f43afd3b706/pele_platform-1.6.0.tar.gz#sha256=648184346e6e4b63b1f13885f806143a875b6d5da59e53a5edb3b4e421bd1f90 (from https://pypi.org/simple/pele-platform/), version: 1.6.0
2022-02-14T12:48:13,596   Found link https://files.pythonhosted.org/packages/af/84/f0a7c07cdbfbdcd341b42a0be1496e1bd61f5c6c163980ad5c67cb0fa5ea/pele_platform-1.6.1.tar.gz#sha256=0ca1ca7bad3f7907b0d55efc35c3f376004da60586f488b7358f66be90a8ba3b (from https://pypi.org/simple/pele-platform/), version: 1.6.1
2022-02-14T12:48:13,597   Found link https://files.pythonhosted.org/packages/93/57/b35e69b71f975bb64d4221e94945a7f30e39d83b16df0eb453914ba800ce/pele_platform-1.6.2.tar.gz#sha256=25edaf5664128f5ef460dbc67731fbf8c01528303bd5ba84ae93bc7c11c52ab7 (from https://pypi.org/simple/pele-platform/), version: 1.6.2
2022-02-14T12:48:13,598   Found link https://files.pythonhosted.org/packages/94/2d/6751082093353f27acdc8413e4ef75cdc0ea1d3d57e3d50ea81f3e24199d/pele_platform-1.6.3.tar.gz#sha256=70fd3288fd46d556490a992ef0adc3e4c3da8f15fd651845109f476ad23f4f19 (from https://pypi.org/simple/pele-platform/), version: 1.6.3
2022-02-14T12:48:13,599 Fetching project page and analyzing links: https://www.piwheels.org/simple/pele-platform/
2022-02-14T12:48:13,599 Getting page https://www.piwheels.org/simple/pele-platform/
2022-02-14T12:48:13,602 Found index url https://www.piwheels.org/simple
2022-02-14T12:48:13,920   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.1-cp34-cp34m-linux_armv6l.whl#sha256=cfa754261c485621955deb1b1b977ab76c3b11decc3791d2046182c538a53265 (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,921   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.1-cp34-cp34m-linux_armv7l.whl#sha256=cfa754261c485621955deb1b1b977ab76c3b11decc3791d2046182c538a53265 (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,921   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.2-cp34-cp34m-linux_armv6l.whl#sha256=8f9f46188cfb1375d1376a62f3cb8fc59775700ecd1d3268ea0decb9de1f2768 (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,922   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.2-cp34-cp34m-linux_armv7l.whl#sha256=8f9f46188cfb1375d1376a62f3cb8fc59775700ecd1d3268ea0decb9de1f2768 (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,923   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.2-cp35-cp35m-linux_armv6l.whl#sha256=c1794338b7c93baf55885b2f40257cdf706bdd2f6fc21d38cbf1f865d162899c (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,923   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.2-cp35-cp35m-linux_armv7l.whl#sha256=c1794338b7c93baf55885b2f40257cdf706bdd2f6fc21d38cbf1f865d162899c (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,924   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.2-cp37-cp37m-linux_armv6l.whl#sha256=52970c8a6e59fe092e264cde9de8c639a778852faaecb06fb6c8b6146b06136d (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,925   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.2-cp37-cp37m-linux_armv7l.whl#sha256=52970c8a6e59fe092e264cde9de8c639a778852faaecb06fb6c8b6146b06136d (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,925   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.2-cp39-cp39-linux_armv6l.whl#sha256=eb926ca03cf91a68265839e92d4b00873d99a215e9c99afc7807424ff391cbe5 (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,926   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.2-cp39-cp39-linux_armv7l.whl#sha256=eb926ca03cf91a68265839e92d4b00873d99a215e9c99afc7807424ff391cbe5 (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,927   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.3-cp34-cp34m-linux_armv6l.whl#sha256=e98b858f83fb7cb0f5c4f4c9dde11da1d2f97a22da162624fc253addfc1b1c56 (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,927   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.3-cp34-cp34m-linux_armv7l.whl#sha256=e98b858f83fb7cb0f5c4f4c9dde11da1d2f97a22da162624fc253addfc1b1c56 (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,928   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.3-cp35-cp35m-linux_armv6l.whl#sha256=39e33c6f24821296c6910712ef8253e663d36726ac6e084ba121a3b744d39a47 (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,928   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.3-cp35-cp35m-linux_armv7l.whl#sha256=39e33c6f24821296c6910712ef8253e663d36726ac6e084ba121a3b744d39a47 (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,929   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.3-cp37-cp37m-linux_armv6l.whl#sha256=343a8ef460b700f7e0e9661ea7252a162c6c9c4b4b2152d24075e1d08c7f588e (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,930   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.3-cp37-cp37m-linux_armv7l.whl#sha256=343a8ef460b700f7e0e9661ea7252a162c6c9c4b4b2152d24075e1d08c7f588e (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,930   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.3-cp39-cp39-linux_armv6l.whl#sha256=3690e174ecc0095e8ed79d7507ce4c0f013996a92962bc170ccec96812788f82 (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,931   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.0.0.3-cp39-cp39-linux_armv7l.whl#sha256=3690e174ecc0095e8ed79d7507ce4c0f013996a92962bc170ccec96812788f82 (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,932   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.1.0-cp34-cp34m-linux_armv6l.whl#sha256=6b7773052481af929dcfc3febcf09d20a46e1d2084eaebc566c246dff6c6402f (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,932   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.1.0-cp34-cp34m-linux_armv7l.whl#sha256=6b7773052481af929dcfc3febcf09d20a46e1d2084eaebc566c246dff6c6402f (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,933   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.1.0-cp35-cp35m-linux_armv6l.whl#sha256=5422629ba4988a3474b07aa6a3700267d19adaa0f82c61093cab9112c93bd31d (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,934   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.1.0-cp35-cp35m-linux_armv7l.whl#sha256=5422629ba4988a3474b07aa6a3700267d19adaa0f82c61093cab9112c93bd31d (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,934   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.1.0-cp37-cp37m-linux_armv6l.whl#sha256=f64dcc740377ca2dc0c89b34443c76b869be5977d38e447ed414f2393bfc52dc (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,935   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.1.0-cp37-cp37m-linux_armv7l.whl#sha256=f64dcc740377ca2dc0c89b34443c76b869be5977d38e447ed414f2393bfc52dc (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,936   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.1.0-cp39-cp39-linux_armv6l.whl#sha256=148e98b510ed810e6a520881ee1edb8f316c2ad632465a45a7339d122fed8caa (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,936   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.1.0-cp39-cp39-linux_armv7l.whl#sha256=148e98b510ed810e6a520881ee1edb8f316c2ad632465a45a7339d122fed8caa (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,937   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.2.0-py3-none-any.whl#sha256=67196e64d155c21e9e4a56fdb9e38d5616398ae761ef0a93ce090eeb61090b54 (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,938   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.2.1-py3-none-any.whl#sha256=5b2ecf5371bc1ad3f63cc83a505f2b8b9a2ad97ae8acc489c472e6d7b048eedc (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,938   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.2.2-py3-none-any.whl#sha256=0e5b906d6a253a746477d3258f4056666bd2c0dc018ce61549911535a8f70869 (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,939   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.2.3-py3-none-any.whl#sha256=7011b58018a73eb9b68717c27b2be53b806002a8ef6bc1dce96fca60556d5fea (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,939   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.3.0-py3-none-any.whl#sha256=90f15ddb37d1252e1b4d14b7693cc93eb154e8b32d688be1a0be9979027c226d (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,940   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.3.1-py3-none-any.whl#sha256=12870844d7c9a163afe074c7eefabc258a4d066ace893a0274f53f0c29b8fdcb (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,941   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.3.2-py3-none-any.whl#sha256=71ef46d8b3afde88aa24a2dbf708bb41b6953485ff83a0a208e9db2665fe10c4 (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,941   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.3.3-py3-none-any.whl#sha256=465699b14119e4d2a842e4ec79acf9f1aeaf77128aa8c04accb887cfff11a2b4 (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,942   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.3.4-py3-none-any.whl#sha256=80f7caf125762176eaeecf2bed6bb9b130bbbcd31f3214a8f5997be8870d2bc4 (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,943   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.4.0-py3-none-any.whl#sha256=388fdc753c3b6bc741bf732aa9a6b85a29cc271d2367aacc4eadc381e8bd0b7c (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,943   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.4.1-py3-none-any.whl#sha256=c7436c7db75936bac606cc8af8d05a492b48c5d5bcb582871d479aca7a270451 (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,944   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.4.2-py3-none-any.whl#sha256=78496fd0cf6b1bcc79201cb623eaae5f56156644e3da9b3d0d3a629649530f97 (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,945   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.4.3-py3-none-any.whl#sha256=fac366abbd0979e83e3dc8b93274d820070e6d91fc0373aef5e3a10ce4b13aff (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,945   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.4.4-py3-none-any.whl#sha256=c335d006901d5acc5b99a37758afcf124c3dbc76cf935ebcbecf2031883da70f (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,946   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.5.0-py3-none-any.whl#sha256=6e46958311c83d72e2c0f5f9b84d2453ab73469c2b58f0e559093aaf935dfde3 (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,947   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.5.1-py3-none-any.whl#sha256=1e2441185afe5cc09f11dd375ad35a722a8557cfa6d58dafa105b6cc82f8dace (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,947   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0-py3-none-any.whl#sha256=a90b83350ffdd162d0d81d6b1fc8f7193b5a97d25088dd494e44c9ed5bc1ee68 (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,948   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0b1-py3-none-any.whl#sha256=d11c7ac7f6e793af3a339a75fe273ad0a8257511394b6e6949f7f8ac3638c822 (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,948   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0b2-py3-none-any.whl#sha256=2c6c7cf955df0ed5f5eeaf9b2ab43ac47d2cfe7743f0defb67146a2806ecee74 (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,949   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0b3-py3-none-any.whl#sha256=cbeabf00ab1a808d4b718129133ceb184ab58585f12d82d7465fe35cfe520d9b (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,950   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0b4-py3-none-any.whl#sha256=aef8869582a5860da64b5bcf629ee3e030c70dc783ce7834b7da2e3f4e32d47d (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,950   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0b5-py3-none-any.whl#sha256=0fe0b546464bc694c651c606052043a0f7c9acaf125ba4bd1fde9f349e88e959 (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,951   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0b6-py3-none-any.whl#sha256=03c84f86922a46a247c25d34fccab1287e71efb2795ad00da3313162b628b5fc (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,952   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0b7-py3-none-any.whl#sha256=2bd15289b4956ee24558f807ff69319d0585a640c676e82f48b26d4f7eeb77fc (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,952   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0rc1-py3-none-any.whl#sha256=f17628f12454edfa542ff6dd8b1597e6dbe27366006582efa2b65537a009272d (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,953   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.0rc2-py3-none-any.whl#sha256=089f457c494767a9d5153745dd6e12ae4c9093451d5ef15fea11ba0e5b603bad (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,954   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.1-py3-none-any.whl#sha256=54fce55ef8d76b985bf74e188b670f577d37240526e4cb10a22f84182e7e6987 (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,954   Skipping link: No binaries permitted for pele-platform: https://www.piwheels.org/simple/pele-platform/pele_platform-1.6.2-py3-none-any.whl#sha256=043772a66d914c07b681016d9eb21a66c3f2fa258b180cfca7448bf80837f378 (from https://www.piwheels.org/simple/pele-platform/)
2022-02-14T12:48:13,996 Given no hashes to check 1 links for project 'pele-platform': discarding no candidates
2022-02-14T12:48:14,029 Collecting pele-platform==1.6.3
2022-02-14T12:48:14,032   Created temporary directory: /tmp/pip-unpack-kfnkx26b
2022-02-14T12:48:14,821   Downloading pele_platform-1.6.3.tar.gz (12.3 MB)
2022-02-14T12:48:28,592   Added pele-platform==1.6.3 from https://files.pythonhosted.org/packages/94/2d/6751082093353f27acdc8413e4ef75cdc0ea1d3d57e3d50ea81f3e24199d/pele_platform-1.6.3.tar.gz#sha256=70fd3288fd46d556490a992ef0adc3e4c3da8f15fd651845109f476ad23f4f19 to build tracker '/tmp/pip-req-tracker-n7g_nuds'
2022-02-14T12:48:28,596     Running setup.py (path:/tmp/pip-wheel-my7j6guc/pele-platform_5797afcb836f445582b40e0b429d2cfa/setup.py) egg_info for package pele-platform
2022-02-14T12:48:28,599     Created temporary directory: /tmp/pip-pip-egg-info-neh8iwte
2022-02-14T12:48:28,600     Running command python setup.py egg_info
2022-02-14T12:48:31,321     running egg_info
2022-02-14T12:48:31,327     creating /tmp/pip-pip-egg-info-neh8iwte/pele_platform.egg-info
2022-02-14T12:48:31,329     writing dependency_links to /tmp/pip-pip-egg-info-neh8iwte/pele_platform.egg-info/dependency_links.txt
2022-02-14T12:48:31,334     writing requirements to /tmp/pip-pip-egg-info-neh8iwte/pele_platform.egg-info/requires.txt
2022-02-14T12:48:31,336     writing top-level names to /tmp/pip-pip-egg-info-neh8iwte/pele_platform.egg-info/top_level.txt
2022-02-14T12:48:31,339     writing /tmp/pip-pip-egg-info-neh8iwte/pele_platform.egg-info/PKG-INFO
2022-02-14T12:48:31,346     writing manifest file '/tmp/pip-pip-egg-info-neh8iwte/pele_platform.egg-info/SOURCES.txt'
2022-02-14T12:48:31,397     reading manifest file '/tmp/pip-pip-egg-info-neh8iwte/pele_platform.egg-info/SOURCES.txt'
2022-02-14T12:48:31,402     reading manifest template 'MANIFEST.in'
2022-02-14T12:48:31,406     warning: no files found matching 'pele_platform/Utilities/PlopRotTemp/param/*'
2022-02-14T12:48:31,406     warning: no files found matching 'pele_platform/AdaptivePELE/atomset/*'
2022-02-14T12:48:31,407     warning: no files found matching 'pele_platform/AdaptivePELE/freeEnergies/*'
2022-02-14T12:48:31,408     warning: no files found matching '*' under directory 'pele_platform/Utilities/PPP/Data/'
2022-02-14T12:48:31,975     warning: no files found matching '*' under directory 'tests/data'
2022-02-14T12:48:32,023     writing manifest file '/tmp/pip-pip-egg-info-neh8iwte/pele_platform.egg-info/SOURCES.txt'
2022-02-14T12:48:32,162   Source in /tmp/pip-wheel-my7j6guc/pele-platform_5797afcb836f445582b40e0b429d2cfa has version 1.6.3, which satisfies requirement pele-platform==1.6.3 from https://files.pythonhosted.org/packages/94/2d/6751082093353f27acdc8413e4ef75cdc0ea1d3d57e3d50ea81f3e24199d/pele_platform-1.6.3.tar.gz#sha256=70fd3288fd46d556490a992ef0adc3e4c3da8f15fd651845109f476ad23f4f19
2022-02-14T12:48:32,164   Removed pele-platform==1.6.3 from https://files.pythonhosted.org/packages/94/2d/6751082093353f27acdc8413e4ef75cdc0ea1d3d57e3d50ea81f3e24199d/pele_platform-1.6.3.tar.gz#sha256=70fd3288fd46d556490a992ef0adc3e4c3da8f15fd651845109f476ad23f4f19 from build tracker '/tmp/pip-req-tracker-n7g_nuds'
2022-02-14T12:48:32,172 Created temporary directory: /tmp/pip-unpack-4v8uix4h
2022-02-14T12:48:32,173 Building wheels for collected packages: pele-platform
2022-02-14T12:48:32,182   Created temporary directory: /tmp/pip-wheel-3v097ygs
2022-02-14T12:48:32,183   Building wheel for pele-platform (setup.py): started
2022-02-14T12:48:32,184   Destination directory: /tmp/pip-wheel-3v097ygs
2022-02-14T12:48:32,184   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-my7j6guc/pele-platform_5797afcb836f445582b40e0b429d2cfa/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-my7j6guc/pele-platform_5797afcb836f445582b40e0b429d2cfa/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-3v097ygs
2022-02-14T12:48:34,875   running bdist_wheel
2022-02-14T12:48:34,886   running build
2022-02-14T12:48:34,887   running build_py
2022-02-14T12:48:34,900   creating build
2022-02-14T12:48:34,901   creating build/lib
2022-02-14T12:48:34,903   creating build/lib/pele_platform
2022-02-14T12:48:34,905   copying pele_platform/converter.py -> build/lib/pele_platform
2022-02-14T12:48:34,912   copying pele_platform/pathway_extractor.py -> build/lib/pele_platform
2022-02-14T12:48:34,917   copying pele_platform/main.py -> build/lib/pele_platform
2022-02-14T12:48:34,921   copying pele_platform/_version.py -> build/lib/pele_platform
2022-02-14T12:48:34,925   copying pele_platform/plotter.py -> build/lib/pele_platform
2022-02-14T12:48:34,935   copying pele_platform/__init__.py -> build/lib/pele_platform
2022-02-14T12:48:34,941   creating build/lib/pele_platform/analysis
2022-02-14T12:48:34,943   copying pele_platform/analysis/pdf_report.py -> build/lib/pele_platform/analysis
2022-02-14T12:48:34,947   copying pele_platform/analysis/data.py -> build/lib/pele_platform/analysis
2022-02-14T12:48:34,955   copying pele_platform/analysis/interactive_plot.py -> build/lib/pele_platform/analysis
2022-02-14T12:48:34,962   copying pele_platform/analysis/__init__.py -> build/lib/pele_platform/analysis
2022-02-14T12:48:34,966   copying pele_platform/analysis/plot.py -> build/lib/pele_platform/analysis
2022-02-14T12:48:34,972   copying pele_platform/analysis/analysis.py -> build/lib/pele_platform/analysis
2022-02-14T12:48:34,984   copying pele_platform/analysis/clustering.py -> build/lib/pele_platform/analysis
2022-02-14T12:48:34,990   creating build/lib/pele_platform/site_finder
2022-02-14T12:48:34,992   copying pele_platform/site_finder/main.py -> build/lib/pele_platform/site_finder
2022-02-14T12:48:34,998   copying pele_platform/site_finder/__init__.py -> build/lib/pele_platform/site_finder
2022-02-14T12:48:35,002   creating build/lib/pele_platform/features
2022-02-14T12:48:35,005   copying pele_platform/features/adaptive.py -> build/lib/pele_platform/features
2022-02-14T12:48:35,013   copying pele_platform/features/frag.py -> build/lib/pele_platform/features
2022-02-14T12:48:35,018   copying pele_platform/features/__init__.py -> build/lib/pele_platform/features
2022-02-14T12:48:35,024   creating build/lib/pele_platform/covalent_docking
2022-02-14T12:48:35,026   copying pele_platform/covalent_docking/main.py -> build/lib/pele_platform/covalent_docking
2022-02-14T12:48:35,031   copying pele_platform/covalent_docking/__init__.py -> build/lib/pele_platform/covalent_docking
2022-02-14T12:48:35,036   creating build/lib/pele_platform/Checker
2022-02-14T12:48:35,038   copying pele_platform/Checker/main.py -> build/lib/pele_platform/Checker
2022-02-14T12:48:35,043   copying pele_platform/Checker/environment_variables.py -> build/lib/pele_platform/Checker
2022-02-14T12:48:35,047   copying pele_platform/Checker/executable.py -> build/lib/pele_platform/Checker
2022-02-14T12:48:35,050   copying pele_platform/Checker/__init__.py -> build/lib/pele_platform/Checker
2022-02-14T12:48:35,053   copying pele_platform/Checker/valid_flags.py -> build/lib/pele_platform/Checker
2022-02-14T12:48:35,058   copying pele_platform/Checker/pdb_checker.py -> build/lib/pele_platform/Checker
2022-02-14T12:48:35,063   copying pele_platform/Checker/python_version.py -> build/lib/pele_platform/Checker
2022-02-14T12:48:35,068   creating build/lib/pele_platform/Frag
2022-02-14T12:48:35,071   copying pele_platform/Frag/checker.py -> build/lib/pele_platform/Frag
2022-02-14T12:48:35,075   copying pele_platform/Frag/fragments.py -> build/lib/pele_platform/Frag
2022-02-14T12:48:35,079   copying pele_platform/Frag/libraries.py -> build/lib/pele_platform/Frag
2022-02-14T12:48:35,085   copying pele_platform/Frag/atoms.py -> build/lib/pele_platform/Frag
2022-02-14T12:48:35,089   copying pele_platform/Frag/generative_model.py -> build/lib/pele_platform/Frag
2022-02-14T12:48:35,093   copying pele_platform/Frag/helpers.py -> build/lib/pele_platform/Frag
2022-02-14T12:48:35,098   copying pele_platform/Frag/__init__.py -> build/lib/pele_platform/Frag
2022-02-14T12:48:35,102   copying pele_platform/Frag/analysis.py -> build/lib/pele_platform/Frag
2022-02-14T12:48:35,108   copying pele_platform/Frag/simulation.py -> build/lib/pele_platform/Frag
2022-02-14T12:48:35,117   creating build/lib/pele_platform/out_in
2022-02-14T12:48:35,120   copying pele_platform/out_in/main.py -> build/lib/pele_platform/out_in
2022-02-14T12:48:35,125   copying pele_platform/out_in/__init__.py -> build/lib/pele_platform/out_in
2022-02-14T12:48:35,130   creating build/lib/pele_platform/Adaptive
2022-02-14T12:48:35,132   copying pele_platform/Adaptive/pca.py -> build/lib/pele_platform/Adaptive
2022-02-14T12:48:35,136   copying pele_platform/Adaptive/interaction_restrictions.py -> build/lib/pele_platform/Adaptive
2022-02-14T12:48:35,141   copying pele_platform/Adaptive/plop_ligand_parametrization.py -> build/lib/pele_platform/Adaptive
2022-02-14T12:48:35,145   copying pele_platform/Adaptive/preequilibrator.py -> build/lib/pele_platform/Adaptive
2022-02-14T12:48:35,150   copying pele_platform/Adaptive/metrics.py -> build/lib/pele_platform/Adaptive
2022-02-14T12:48:35,153   copying pele_platform/Adaptive/box.py -> build/lib/pele_platform/Adaptive
2022-02-14T12:48:35,157   copying pele_platform/Adaptive/plop_solvent.py -> build/lib/pele_platform/Adaptive
2022-02-14T12:48:35,161   copying pele_platform/Adaptive/__init__.py -> build/lib/pele_platform/Adaptive
2022-02-14T12:48:35,165   copying pele_platform/Adaptive/parametrizer.py -> build/lib/pele_platform/Adaptive
2022-02-14T12:48:35,173   copying pele_platform/Adaptive/simulation.py -> build/lib/pele_platform/Adaptive
2022-02-14T12:48:35,180   creating build/lib/pele_platform/constants
2022-02-14T12:48:35,182   copying pele_platform/constants/pele_params.py -> build/lib/pele_platform/constants
2022-02-14T12:48:35,188   copying pele_platform/constants/constants.py -> build/lib/pele_platform/constants
2022-02-14T12:48:35,194   copying pele_platform/constants/__init__.py -> build/lib/pele_platform/constants
2022-02-14T12:48:35,198   creating build/lib/pele_platform/enzyme_engineering
2022-02-14T12:48:35,200   copying pele_platform/enzyme_engineering/saturated_mutagenesis.py -> build/lib/pele_platform/enzyme_engineering
2022-02-14T12:48:35,205   copying pele_platform/enzyme_engineering/__init__.py -> build/lib/pele_platform/enzyme_engineering
2022-02-14T12:48:35,209   creating build/lib/pele_platform/RNA
2022-02-14T12:48:35,211   copying pele_platform/RNA/prep.py -> build/lib/pele_platform/RNA
2022-02-14T12:48:35,216   copying pele_platform/RNA/__init__.py -> build/lib/pele_platform/RNA
2022-02-14T12:48:35,220   creating build/lib/pele_platform/gpcr
2022-02-14T12:48:35,222   copying pele_platform/gpcr/main.py -> build/lib/pele_platform/gpcr
2022-02-14T12:48:35,226   copying pele_platform/gpcr/__init__.py -> build/lib/pele_platform/gpcr
2022-02-14T12:48:35,230   creating build/lib/pele_platform/Utilities
2022-02-14T12:48:35,232   copying pele_platform/Utilities/__init__.py -> build/lib/pele_platform/Utilities
2022-02-14T12:48:35,236   creating build/lib/pele_platform/PPI
2022-02-14T12:48:35,239   copying pele_platform/PPI/cluster.py -> build/lib/pele_platform/PPI
2022-02-14T12:48:35,243   copying pele_platform/PPI/simulation_launcher.py -> build/lib/pele_platform/PPI
2022-02-14T12:48:35,248   copying pele_platform/PPI/preparation.py -> build/lib/pele_platform/PPI
2022-02-14T12:48:35,252   copying pele_platform/PPI/main.py -> build/lib/pele_platform/PPI
2022-02-14T12:48:35,257   copying pele_platform/PPI/__init__.py -> build/lib/pele_platform/PPI
2022-02-14T12:48:35,261   creating build/lib/pele_platform/Errors
2022-02-14T12:48:35,262   copying pele_platform/Errors/__init__.py -> build/lib/pele_platform/Errors
2022-02-14T12:48:35,266   copying pele_platform/Errors/custom_errors.py -> build/lib/pele_platform/Errors
2022-02-14T12:48:35,271   creating build/lib/pele_platform/Frag/parameters
2022-02-14T12:48:35,273   copying pele_platform/Frag/parameters/files.py -> build/lib/pele_platform/Frag/parameters
2022-02-14T12:48:35,278   copying pele_platform/Frag/parameters/metrics.py -> build/lib/pele_platform/Frag/parameters
2022-02-14T12:48:35,283   copying pele_platform/Frag/parameters/water.py -> build/lib/pele_platform/Frag/parameters
2022-02-14T12:48:35,287   copying pele_platform/Frag/parameters/optional.py -> build/lib/pele_platform/Frag/parameters
2022-02-14T12:48:35,291   copying pele_platform/Frag/parameters/__init__.py -> build/lib/pele_platform/Frag/parameters
2022-02-14T12:48:35,295   copying pele_platform/Frag/parameters/simulation.py -> build/lib/pele_platform/Frag/parameters
2022-02-14T12:48:35,302   creating build/lib/pele_platform/Utilities/Helpers
2022-02-14T12:48:35,304   copying pele_platform/Utilities/Helpers/map_atoms.py -> build/lib/pele_platform/Utilities/Helpers
2022-02-14T12:48:35,310   copying pele_platform/Utilities/Helpers/template_builder.py -> build/lib/pele_platform/Utilities/Helpers
2022-02-14T12:48:35,314   copying pele_platform/Utilities/Helpers/yaml_parser.py -> build/lib/pele_platform/Utilities/Helpers
2022-02-14T12:48:35,321   copying pele_platform/Utilities/Helpers/bestStructs.py -> build/lib/pele_platform/Utilities/Helpers
2022-02-14T12:48:35,326   copying pele_platform/Utilities/Helpers/protein_wizard.py -> build/lib/pele_platform/Utilities/Helpers
2022-02-14T12:48:35,331   copying pele_platform/Utilities/Helpers/randomize.py -> build/lib/pele_platform/Utilities/Helpers
2022-02-14T12:48:35,337   copying pele_platform/Utilities/Helpers/plop_launcher.py -> build/lib/pele_platform/Utilities/Helpers
2022-02-14T12:48:35,341   copying pele_platform/Utilities/Helpers/launcher.py -> build/lib/pele_platform/Utilities/Helpers
2022-02-14T12:48:35,345   copying pele_platform/Utilities/Helpers/conda_deployment.py -> build/lib/pele_platform/Utilities/Helpers
2022-02-14T12:48:35,350   copying pele_platform/Utilities/Helpers/system_prep.py -> build/lib/pele_platform/Utilities/Helpers
2022-02-14T12:48:35,355   copying pele_platform/Utilities/Helpers/center_of_mass.py -> build/lib/pele_platform/Utilities/Helpers
2022-02-14T12:48:35,359   copying pele_platform/Utilities/Helpers/interaction_constraints.py -> build/lib/pele_platform/Utilities/Helpers
2022-02-14T12:48:35,363   copying pele_platform/Utilities/Helpers/helpers.py -> build/lib/pele_platform/Utilities/Helpers
2022-02-14T12:48:35,370   copying pele_platform/Utilities/Helpers/water.py -> build/lib/pele_platform/Utilities/Helpers
2022-02-14T12:48:35,376   copying pele_platform/Utilities/Helpers/solventOBCParamsGenerator.py -> build/lib/pele_platform/Utilities/Helpers
2022-02-14T12:48:35,381   copying pele_platform/Utilities/Helpers/__init__.py -> build/lib/pele_platform/Utilities/Helpers
2022-02-14T12:48:35,385   copying pele_platform/Utilities/Helpers/ligand_conformations.py -> build/lib/pele_platform/Utilities/Helpers
2022-02-14T12:48:35,389   copying pele_platform/Utilities/Helpers/calculatePCA4PELE.py -> build/lib/pele_platform/Utilities/Helpers
2022-02-14T12:48:35,396   copying pele_platform/Utilities/Helpers/simulation.py -> build/lib/pele_platform/Utilities/Helpers
2022-02-14T12:48:35,401   copying pele_platform/Utilities/Helpers/missing_residues.py -> build/lib/pele_platform/Utilities/Helpers
2022-02-14T12:48:35,406   creating build/lib/pele_platform/Utilities/Parameters
2022-02-14T12:48:35,408   copying pele_platform/Utilities/Parameters/parameters.py -> build/lib/pele_platform/Utilities/Parameters
2022-02-14T12:48:35,414   copying pele_platform/Utilities/Parameters/__init__.py -> build/lib/pele_platform/Utilities/Parameters
2022-02-14T12:48:35,419   creating build/lib/pele_platform/Utilities/Helpers/Metals
2022-02-14T12:48:35,421   copying pele_platform/Utilities/Helpers/Metals/metal_polarisation.py -> build/lib/pele_platform/Utilities/Helpers/Metals
2022-02-14T12:48:35,425   copying pele_platform/Utilities/Helpers/Metals/__init__.py -> build/lib/pele_platform/Utilities/Helpers/Metals
2022-02-14T12:48:35,429   copying pele_platform/Utilities/Helpers/Metals/metal_constraints.py -> build/lib/pele_platform/Utilities/Helpers/Metals
2022-02-14T12:48:35,436   creating build/lib/pele_platform/Utilities/Helpers/constraints
2022-02-14T12:48:35,438   copying pele_platform/Utilities/Helpers/constraints/smiles_constraints.py -> build/lib/pele_platform/Utilities/Helpers/constraints
2022-02-14T12:48:35,443   copying pele_platform/Utilities/Helpers/constraints/__init__.py -> build/lib/pele_platform/Utilities/Helpers/constraints
2022-02-14T12:48:35,446   copying pele_platform/Utilities/Helpers/constraints/alpha_constraints.py -> build/lib/pele_platform/Utilities/Helpers/constraints
2022-02-14T12:48:35,452   creating build/lib/pele_platform/Utilities/Parameters/SimulationFolders
2022-02-14T12:48:35,454   copying pele_platform/Utilities/Parameters/SimulationFolders/simulation_folders.py -> build/lib/pele_platform/Utilities/Parameters/SimulationFolders
2022-02-14T12:48:35,459   copying pele_platform/Utilities/Parameters/SimulationFolders/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationFolders
2022-02-14T12:48:35,463   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams
2022-02-14T12:48:35,465   copying pele_platform/Utilities/Parameters/SimulationParams/simulation_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams
2022-02-14T12:48:35,472   copying pele_platform/Utilities/Parameters/SimulationParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams
2022-02-14T12:48:35,477   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/site_finder
2022-02-14T12:48:35,479   copying pele_platform/Utilities/Parameters/SimulationParams/site_finder/site_finder.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/site_finder
2022-02-14T12:48:35,483   copying pele_platform/Utilities/Parameters/SimulationParams/site_finder/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/site_finder
2022-02-14T12:48:35,487   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2022-02-14T12:48:35,489   copying pele_platform/Utilities/Parameters/SimulationParams/InOutParams/inout_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2022-02-14T12:48:35,493   copying pele_platform/Utilities/Parameters/SimulationParams/InOutParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2022-02-14T12:48:35,498   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA
2022-02-14T12:48:35,500   copying pele_platform/Utilities/Parameters/SimulationParams/PCA/pca.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA
2022-02-14T12:48:35,504   copying pele_platform/Utilities/Parameters/SimulationParams/PCA/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA
2022-02-14T12:48:35,508   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2022-02-14T12:48:35,510   copying pele_platform/Utilities/Parameters/SimulationParams/MSMParams/msm_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2022-02-14T12:48:35,514   copying pele_platform/Utilities/Parameters/SimulationParams/MSMParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2022-02-14T12:48:35,519   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2022-02-14T12:48:35,521   copying pele_platform/Utilities/Parameters/SimulationParams/BiasParams/bias_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2022-02-14T12:48:35,525   copying pele_platform/Utilities/Parameters/SimulationParams/BiasParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2022-02-14T12:48:35,529   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2022-02-14T12:48:35,531   copying pele_platform/Utilities/Parameters/SimulationParams/GlideParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2022-02-14T12:48:35,535   copying pele_platform/Utilities/Parameters/SimulationParams/GlideParams/glide_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2022-02-14T12:48:35,540   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI
2022-02-14T12:48:35,542   copying pele_platform/Utilities/Parameters/SimulationParams/PPI/ppi.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI
2022-02-14T12:48:35,546   copying pele_platform/Utilities/Parameters/SimulationParams/PPI/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI
2022-02-14T12:48:35,549   running egg_info
2022-02-14T12:48:35,569   writing top-level names to pele_platform.egg-info/top_level.txt
2022-02-14T12:48:35,571   writing dependency_links to pele_platform.egg-info/dependency_links.txt
2022-02-14T12:48:35,573   writing pele_platform.egg-info/PKG-INFO
2022-02-14T12:48:35,579   writing requirements to pele_platform.egg-info/requires.txt
2022-02-14T12:48:35,624   reading manifest file 'pele_platform.egg-info/SOURCES.txt'
2022-02-14T12:48:35,652   reading manifest template 'MANIFEST.in'
2022-02-14T12:48:35,655   warning: no files found matching 'pele_platform/Utilities/PlopRotTemp/param/*'
2022-02-14T12:48:35,655   warning: no files found matching 'pele_platform/AdaptivePELE/atomset/*'
2022-02-14T12:48:35,656   warning: no files found matching 'pele_platform/AdaptivePELE/freeEnergies/*'
2022-02-14T12:48:35,657   warning: no files found matching '*' under directory 'pele_platform/Utilities/PPP/Data/'
2022-02-14T12:48:36,097   warning: no files found matching '*' under directory 'tests/data'
2022-02-14T12:48:36,170   writing manifest file 'pele_platform.egg-info/SOURCES.txt'
2022-02-14T12:48:36,282   creating build/lib/pele_platform/Examples
2022-02-14T12:48:36,284   copying pele_platform/Examples/test.sl -> build/lib/pele_platform/Examples
2022-02-14T12:48:36,289   creating build/lib/pele_platform/Examples/Adaptive
2022-02-14T12:48:36,291   copying pele_platform/Examples/Adaptive/STR.rot.assign -> build/lib/pele_platform/Examples/Adaptive
2022-02-14T12:48:36,296   copying pele_platform/Examples/Adaptive/adaptive.conf -> build/lib/pele_platform/Examples/Adaptive
2022-02-14T12:48:36,301   copying pele_platform/Examples/Adaptive/pele_file_4Adaptive.conf -> build/lib/pele_platform/Examples/Adaptive
2022-02-14T12:48:36,306   copying pele_platform/Examples/Adaptive/strz -> build/lib/pele_platform/Examples/Adaptive
2022-02-14T12:48:36,317   copying pele_platform/Examples/Adaptive/test.sl -> build/lib/pele_platform/Examples/Adaptive
2022-02-14T12:48:36,323   creating build/lib/pele_platform/Examples/Msm
2022-02-14T12:48:36,326   copying pele_platform/Examples/Msm/AS4_INIT.mae -> build/lib/pele_platform/Examples/Msm
2022-02-14T12:48:36,334   copying pele_platform/Examples/Msm/PR_1A28_protein.pdb -> build/lib/pele_platform/Examples/Msm
2022-02-14T12:48:36,372   copying pele_platform/Examples/Msm/PR_1A28_xray_-_minimized.pdb -> build/lib/pele_platform/Examples/Msm
2022-02-14T12:48:36,410   copying pele_platform/Examples/Msm/PR_1A28_xray_-_minimized_processed.pdb -> build/lib/pele_platform/Examples/Msm
2022-02-14T12:48:36,449   copying pele_platform/Examples/Msm/PR_AS4.pdb -> build/lib/pele_platform/Examples/Msm
2022-02-14T12:48:36,489   copying pele_platform/Examples/Msm/input.yaml -> build/lib/pele_platform/Examples/Msm
2022-02-14T12:48:36,494   creating build/lib/pele_platform/Examples/PPI
2022-02-14T12:48:36,495   copying pele_platform/Examples/PPI/1f47_ligand.pdb -> build/lib/pele_platform/Examples/PPI
2022-02-14T12:48:36,503   copying pele_platform/Examples/PPI/1f47_prep.pdb -> build/lib/pele_platform/Examples/PPI
2022-02-14T12:48:36,527   copying pele_platform/Examples/PPI/1tnf_ligand.pdb -> build/lib/pele_platform/Examples/PPI
2022-02-14T12:48:36,533   copying pele_platform/Examples/PPI/1tnf_prep.pdb -> build/lib/pele_platform/Examples/PPI
2022-02-14T12:48:36,591   copying pele_platform/Examples/PPI/input.yaml -> build/lib/pele_platform/Examples/PPI
2022-02-14T12:48:36,595   copying pele_platform/Examples/PPI/input_folder.yaml -> build/lib/pele_platform/Examples/PPI
2022-02-14T12:48:36,600   copying pele_platform/Examples/PPI/input_skipref.yaml -> build/lib/pele_platform/Examples/PPI
2022-02-14T12:48:36,606   creating build/lib/pele_platform/Examples/RNA
2022-02-14T12:48:36,609   copying pele_platform/Examples/RNA/2l94.yaml -> build/lib/pele_platform/Examples/RNA
2022-02-14T12:48:36,615   copying pele_platform/Examples/RNA/5C45_prep.pdb -> build/lib/pele_platform/Examples/RNA
2022-02-14T12:48:36,658   copying pele_platform/Examples/RNA/5C45_prep_proc.pdb -> build/lib/pele_platform/Examples/RNA
2022-02-14T12:48:36,698   copying pele_platform/Examples/RNA/input.yaml -> build/lib/pele_platform/Examples/RNA
2022-02-14T12:48:36,702   copying pele_platform/Examples/RNA/input_induced.yaml -> build/lib/pele_platform/Examples/RNA
2022-02-14T12:48:36,709   creating build/lib/pele_platform/Examples/analysis
2022-02-14T12:48:36,711   copying pele_platform/Examples/analysis/input.yaml -> build/lib/pele_platform/Examples/analysis
2022-02-14T12:48:36,718   copying pele_platform/Examples/analysis/input_flags.yaml -> build/lib/pele_platform/Examples/analysis
2022-02-14T12:48:36,724   copying pele_platform/Examples/analysis/input_flags0.yaml -> build/lib/pele_platform/Examples/analysis
2022-02-14T12:48:36,729   copying pele_platform/Examples/analysis/input_xtc.yaml -> build/lib/pele_platform/Examples/analysis
2022-02-14T12:48:36,733   creating build/lib/pele_platform/Examples/analysis/data
2022-02-14T12:48:36,735   copying pele_platform/Examples/analysis/data/MG.rot.assign -> build/lib/pele_platform/Examples/analysis/data
2022-02-14T12:48:36,739   copying pele_platform/Examples/analysis/data/STR.rot.assign -> build/lib/pele_platform/Examples/analysis/data
2022-02-14T12:48:36,743   copying pele_platform/Examples/analysis/data/adaptive.conf -> build/lib/pele_platform/Examples/analysis/data
2022-02-14T12:48:36,748   copying pele_platform/Examples/analysis/data/input.yaml -> build/lib/pele_platform/Examples/analysis/data
2022-02-14T12:48:36,752   copying pele_platform/Examples/analysis/data/input_flags.yaml -> build/lib/pele_platform/Examples/analysis/data
2022-02-14T12:48:36,757   copying pele_platform/Examples/analysis/data/input_flags0.yaml -> build/lib/pele_platform/Examples/analysis/data
2022-02-14T12:48:36,761   copying pele_platform/Examples/analysis/data/input_mae.yaml -> build/lib/pele_platform/Examples/analysis/data
2022-02-14T12:48:36,766   copying pele_platform/Examples/analysis/data/mgz -> build/lib/pele_platform/Examples/analysis/data
2022-02-14T12:48:36,770   copying pele_platform/Examples/analysis/data/pele.conf -> build/lib/pele_platform/Examples/analysis/data
2022-02-14T12:48:36,775   copying pele_platform/Examples/analysis/data/strz -> build/lib/pele_platform/Examples/analysis/data
2022-02-14T12:48:36,779   creating build/lib/pele_platform/Examples/analysis/data/empty_reports_output
2022-02-14T12:48:36,779   creating build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0
2022-02-14T12:48:36,782   copying pele_platform/Examples/analysis/data/empty_reports_output/0/report_1 -> build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0
2022-02-14T12:48:36,787   copying pele_platform/Examples/analysis/data/empty_reports_output/0/report_2 -> build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0
2022-02-14T12:48:36,791   copying pele_platform/Examples/analysis/data/empty_reports_output/0/topologyMapping.txt -> build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0
2022-02-14T12:48:36,796   copying pele_platform/Examples/analysis/data/empty_reports_output/0/trajectory_1.pdb -> build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0
2022-02-14T12:48:36,838   copying pele_platform/Examples/analysis/data/empty_reports_output/0/trajectory_2.pdb -> build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0
2022-02-14T12:48:36,954   creating build/lib/pele_platform/Examples/analysis/data/inputs
2022-02-14T12:48:36,956   copying pele_platform/Examples/analysis/data/inputs/input1.pdb -> build/lib/pele_platform/Examples/analysis/data/inputs
2022-02-14T12:48:36,998   copying pele_platform/Examples/analysis/data/inputs/input2.pdb -> build/lib/pele_platform/Examples/analysis/data/inputs
2022-02-14T12:48:37,039   copying pele_platform/Examples/analysis/data/inputs/input3.pdb -> build/lib/pele_platform/Examples/analysis/data/inputs
2022-02-14T12:48:37,080   creating build/lib/pele_platform/Examples/analysis/data/output
2022-02-14T12:48:37,082   copying pele_platform/Examples/analysis/data/output/originalControlFile.conf -> build/lib/pele_platform/Examples/analysis/data/output
2022-02-14T12:48:37,089   creating build/lib/pele_platform/Examples/analysis/data/output/0
2022-02-14T12:48:37,092   copying pele_platform/Examples/analysis/data/output/0/report_1 -> build/lib/pele_platform/Examples/analysis/data/output/0
2022-02-14T12:48:37,097   copying pele_platform/Examples/analysis/data/output/0/topologyMapping.txt -> build/lib/pele_platform/Examples/analysis/data/output/0
2022-02-14T12:48:37,102   copying pele_platform/Examples/analysis/data/output/0/trajectory_1.pdb -> build/lib/pele_platform/Examples/analysis/data/output/0
2022-02-14T12:48:37,140   creating build/lib/pele_platform/Examples/analysis/data/output/0/clustering
2022-02-14T12:48:37,142   copying pele_platform/Examples/analysis/data/output/0/clustering/object.pkl -> build/lib/pele_platform/Examples/analysis/data/output/0/clustering
2022-02-14T12:48:37,184   copying pele_platform/Examples/analysis/data/output/0/clustering/summary.txt -> build/lib/pele_platform/Examples/analysis/data/output/0/clustering
2022-02-14T12:48:37,190   creating build/lib/pele_platform/Examples/analysis/data/output/synchronization
2022-02-14T12:48:37,192   copying pele_platform/Examples/analysis/data/output/synchronization/syncFile.lock -> build/lib/pele_platform/Examples/analysis/data/output/synchronization
2022-02-14T12:48:37,198   creating build/lib/pele_platform/Examples/analysis/data/output/topologies
2022-02-14T12:48:37,200   copying pele_platform/Examples/analysis/data/output/topologies/topologies.pkl -> build/lib/pele_platform/Examples/analysis/data/output/topologies
2022-02-14T12:48:37,235   copying pele_platform/Examples/analysis/data/output/topologies/topology_0.pdb -> build/lib/pele_platform/Examples/analysis/data/output/topologies
2022-02-14T12:48:37,271   creating build/lib/pele_platform/Examples/analysis/data/xtc
2022-02-14T12:48:37,273   copying pele_platform/Examples/analysis/data/xtc/summary.csv -> build/lib/pele_platform/Examples/analysis/data/xtc
2022-02-14T12:48:37,280   creating build/lib/pele_platform/Examples/analysis/data/xtc/0
2022-02-14T12:48:37,282   copying pele_platform/Examples/analysis/data/xtc/0/report_1 -> build/lib/pele_platform/Examples/analysis/data/xtc/0
2022-02-14T12:48:37,289   copying pele_platform/Examples/analysis/data/xtc/0/report_2 -> build/lib/pele_platform/Examples/analysis/data/xtc/0
2022-02-14T12:48:37,296   copying pele_platform/Examples/analysis/data/xtc/0/trajectory_1.xtc -> build/lib/pele_platform/Examples/analysis/data/xtc/0
2022-02-14T12:48:37,301   copying pele_platform/Examples/analysis/data/xtc/0/trajectory_2.xtc -> build/lib/pele_platform/Examples/analysis/data/xtc/0
2022-02-14T12:48:37,307   creating build/lib/pele_platform/Examples/analysis/data/xtc/topologies
2022-02-14T12:48:37,309   copying pele_platform/Examples/analysis/data/xtc/topologies/topology_0.pdb -> build/lib/pele_platform/Examples/analysis/data/xtc/topologies
2022-02-14T12:48:37,324   creating build/lib/pele_platform/Examples/bias
2022-02-14T12:48:37,326   copying pele_platform/Examples/bias/complex.pdb -> build/lib/pele_platform/Examples/bias
2022-02-14T12:48:37,363   copying pele_platform/Examples/bias/input_defaults.yaml -> build/lib/pele_platform/Examples/bias
2022-02-14T12:48:37,369   creating build/lib/pele_platform/Examples/box
2022-02-14T12:48:37,372   copying pele_platform/Examples/box/input.yaml -> build/lib/pele_platform/Examples/box
2022-02-14T12:48:37,379   creating build/lib/pele_platform/Examples/checker
2022-02-14T12:48:37,381   copying pele_platform/Examples/checker/capped.pdb -> build/lib/pele_platform/Examples/checker
2022-02-14T12:48:37,515   copying pele_platform/Examples/checker/capped_no_connects.pdb -> build/lib/pele_platform/Examples/checker
2022-02-14T12:48:37,651   copying pele_platform/Examples/checker/complex.pdb -> build/lib/pele_platform/Examples/checker
2022-02-14T12:48:37,699   copying pele_platform/Examples/checker/complex2.pdb -> build/lib/pele_platform/Examples/checker
2022-02-14T12:48:37,725   copying pele_platform/Examples/checker/complex_unk.yaml -> build/lib/pele_platform/Examples/checker
2022-02-14T12:48:37,792   copying pele_platform/Examples/checker/incompatible_flags.yaml -> build/lib/pele_platform/Examples/checker
2022-02-14T12:48:37,796   copying pele_platform/Examples/checker/input.yaml -> build/lib/pele_platform/Examples/checker
2022-02-14T12:48:37,801   copying pele_platform/Examples/checker/input_atom_string.yaml -> build/lib/pele_platform/Examples/checker
2022-02-14T12:48:37,806   copying pele_platform/Examples/checker/input_env.yaml -> build/lib/pele_platform/Examples/checker
2022-02-14T12:48:37,812   copying pele_platform/Examples/checker/input_map_atom_num.yaml -> build/lib/pele_platform/Examples/checker
2022-02-14T12:48:37,819   copying pele_platform/Examples/checker/input_map_atom_str.yaml -> build/lib/pele_platform/Examples/checker
2022-02-14T12:48:37,825   copying pele_platform/Examples/checker/input_pele_exec.yaml -> build/lib/pele_platform/Examples/checker
2022-02-14T12:48:37,829   copying pele_platform/Examples/checker/input_rotamer.yaml -> build/lib/pele_platform/Examples/checker
2022-02-14T12:48:37,834   copying pele_platform/Examples/checker/input_space.yaml -> build/lib/pele_platform/Examples/checker
2022-02-14T12:48:37,839   copying pele_platform/Examples/checker/input_tab.yaml -> build/lib/pele_platform/Examples/checker
2022-02-14T12:48:37,843   copying pele_platform/Examples/checker/input_template.yaml -> build/lib/pele_platform/Examples/checker
2022-02-14T12:48:37,848   copying pele_platform/Examples/checker/input_underscore.yaml -> build/lib/pele_platform/Examples/checker
2022-02-14T12:48:37,853   copying pele_platform/Examples/checker/input_unk.yaml -> build/lib/pele_platform/Examples/checker
2022-02-14T12:48:37,857   copying pele_platform/Examples/checker/ligand2.pdb -> build/lib/pele_platform/Examples/checker
2022-02-14T12:48:37,863   copying pele_platform/Examples/checker/mapping_complex.pdb -> build/lib/pele_platform/Examples/checker
2022-02-14T12:48:37,926   copying pele_platform/Examples/checker/multiple_simulations.yaml -> build/lib/pele_platform/Examples/checker
2022-02-14T12:48:37,932   copying pele_platform/Examples/checker/negative_residues.pdb -> build/lib/pele_platform/Examples/checker
2022-02-14T12:48:37,939   creating build/lib/pele_platform/Examples/clustering
2022-02-14T12:48:37,941   copying pele_platform/Examples/clustering/summary.csv -> build/lib/pele_platform/Examples/clustering
2022-02-14T12:48:37,948   creating build/lib/pele_platform/Examples/clustering/0
2022-02-14T12:48:37,950   copying pele_platform/Examples/clustering/0/report_1 -> build/lib/pele_platform/Examples/clustering/0
2022-02-14T12:48:37,956   copying pele_platform/Examples/clustering/0/report_2 -> build/lib/pele_platform/Examples/clustering/0
2022-02-14T12:48:37,960   copying pele_platform/Examples/clustering/0/report_3 -> build/lib/pele_platform/Examples/clustering/0
2022-02-14T12:48:37,965   copying pele_platform/Examples/clustering/0/report_4 -> build/lib/pele_platform/Examples/clustering/0
2022-02-14T12:48:37,969   copying pele_platform/Examples/clustering/0/topologyMapping.txt -> build/lib/pele_platform/Examples/clustering/0
2022-02-14T12:48:37,974   copying pele_platform/Examples/clustering/0/trajectory_1.pdb -> build/lib/pele_platform/Examples/clustering/0
2022-02-14T12:48:38,040   copying pele_platform/Examples/clustering/0/trajectory_2.pdb -> build/lib/pele_platform/Examples/clustering/0
2022-02-14T12:48:38,078   copying pele_platform/Examples/clustering/0/trajectory_3.pdb -> build/lib/pele_platform/Examples/clustering/0
2022-02-14T12:48:38,148   copying pele_platform/Examples/clustering/0/trajectory_4.pdb -> build/lib/pele_platform/Examples/clustering/0
2022-02-14T12:48:38,215   creating build/lib/pele_platform/Examples/clustering/0/clustering
2022-02-14T12:48:38,217   copying pele_platform/Examples/clustering/0/clustering/object.pkl -> build/lib/pele_platform/Examples/clustering/0/clustering
2022-02-14T12:48:38,452   copying pele_platform/Examples/clustering/0/clustering/summary.txt -> build/lib/pele_platform/Examples/clustering/0/clustering
2022-02-14T12:48:38,458   creating build/lib/pele_platform/Examples/clustering_xtc
2022-02-14T12:48:38,460   copying pele_platform/Examples/clustering_xtc/water_clustering.yaml -> build/lib/pele_platform/Examples/clustering_xtc
2022-02-14T12:48:38,466   creating build/lib/pele_platform/Examples/clustering_xtc/0
2022-02-14T12:48:38,468   copying pele_platform/Examples/clustering_xtc/0/report_1 -> build/lib/pele_platform/Examples/clustering_xtc/0
2022-02-14T12:48:38,473   copying pele_platform/Examples/clustering_xtc/0/report_2 -> build/lib/pele_platform/Examples/clustering_xtc/0
2022-02-14T12:48:38,478   copying pele_platform/Examples/clustering_xtc/0/report_3 -> build/lib/pele_platform/Examples/clustering_xtc/0
2022-02-14T12:48:38,483   copying pele_platform/Examples/clustering_xtc/0/report_4 -> build/lib/pele_platform/Examples/clustering_xtc/0
2022-02-14T12:48:38,487   copying pele_platform/Examples/clustering_xtc/0/topology.pdb -> build/lib/pele_platform/Examples/clustering_xtc/0
2022-02-14T12:48:38,523   copying pele_platform/Examples/clustering_xtc/0/trajectory_1.xtc -> build/lib/pele_platform/Examples/clustering_xtc/0
2022-02-14T12:48:38,533   copying pele_platform/Examples/clustering_xtc/0/trajectory_2.xtc -> build/lib/pele_platform/Examples/clustering_xtc/0
2022-02-14T12:48:38,542   copying pele_platform/Examples/clustering_xtc/0/trajectory_3.xtc -> build/lib/pele_platform/Examples/clustering_xtc/0
2022-02-14T12:48:38,551   copying pele_platform/Examples/clustering_xtc/0/trajectory_4.xtc -> build/lib/pele_platform/Examples/clustering_xtc/0
2022-02-14T12:48:38,559   creating build/lib/pele_platform/Examples/constraints
2022-02-14T12:48:38,561   copying pele_platform/Examples/constraints/1zop.pdb -> build/lib/pele_platform/Examples/constraints
2022-02-14T12:48:38,590   copying pele_platform/Examples/constraints/4l3a_prep.pdb -> build/lib/pele_platform/Examples/constraints
2022-02-14T12:48:38,646   copying pele_platform/Examples/constraints/4qnr_prep.pdb -> build/lib/pele_platform/Examples/constraints
2022-02-14T12:48:38,779   copying pele_platform/Examples/constraints/4w4o_prep.pdb -> build/lib/pele_platform/Examples/constraints
2022-02-14T12:48:38,812   copying pele_platform/Examples/constraints/4w5i_prep.pdb -> build/lib/pele_platform/Examples/constraints
2022-02-14T12:48:38,847   copying pele_platform/Examples/constraints/4zu9_prep.pdb -> build/lib/pele_platform/Examples/constraints
2022-02-14T12:48:38,961   copying pele_platform/Examples/constraints/ca_constraints.pdb -> build/lib/pele_platform/Examples/constraints
2022-02-14T12:48:39,029   copying pele_platform/Examples/constraints/complex_smiles_error.pdb -> build/lib/pele_platform/Examples/constraints
2022-02-14T12:48:39,072   copying pele_platform/Examples/constraints/fail_input_permissive_constraints.yaml -> build/lib/pele_platform/Examples/constraints
2022-02-14T12:48:39,079   copying pele_platform/Examples/constraints/input_all_metal_constraints.yaml -> build/lib/pele_platform/Examples/constraints
2022-02-14T12:48:39,085   copying pele_platform/Examples/constraints/input_ca_noppp.yaml -> build/lib/pele_platform/Examples/constraints
2022-02-14T12:48:39,089   copying pele_platform/Examples/constraints/input_ca_ppp.yaml -> build/lib/pele_platform/Examples/constraints
2022-02-14T12:48:39,094   copying pele_platform/Examples/constraints/input_constrain_smarts.yaml -> build/lib/pele_platform/Examples/constraints
2022-02-14T12:48:39,098   copying pele_platform/Examples/constraints/input_constrain_smiles.yaml -> build/lib/pele_platform/Examples/constraints
2022-02-14T12:48:39,103   copying pele_platform/Examples/constraints/input_external_constraints.yaml -> build/lib/pele_platform/Examples/constraints
2022-02-14T12:48:39,107   copying pele_platform/Examples/constraints/input_ignore.yaml -> build/lib/pele_platform/Examples/constraints
2022-02-14T12:48:39,112   copying pele_platform/Examples/constraints/input_k.yaml -> build/lib/pele_platform/Examples/constraints
2022-02-14T12:48:39,116   copying pele_platform/Examples/constraints/input_metals.yaml -> build/lib/pele_platform/Examples/constraints
2022-02-14T12:48:39,121   copying pele_platform/Examples/constraints/input_no_metal_constraints.yaml -> build/lib/pele_platform/Examples/constraints
2022-02-14T12:48:39,125   copying pele_platform/Examples/constraints/input_permissive_exception.yaml -> build/lib/pele_platform/Examples/constraints
2022-02-14T12:48:39,130   copying pele_platform/Examples/constraints/input_smiles_error.yaml -> build/lib/pele_platform/Examples/constraints
2022-02-14T12:48:39,134   copying pele_platform/Examples/constraints/input_square_planar.yaml -> build/lib/pele_platform/Examples/constraints
2022-02-14T12:48:39,139   copying pele_platform/Examples/constraints/input_square_planar_polarisation.yaml -> build/lib/pele_platform/Examples/constraints
2022-02-14T12:48:39,143   copying pele_platform/Examples/constraints/input_tetrahedral.yaml -> build/lib/pele_platform/Examples/constraints
2022-02-14T12:48:39,148   copying pele_platform/Examples/constraints/no_connects.pdb -> build/lib/pele_platform/Examples/constraints
2022-02-14T12:48:39,152   copying pele_platform/Examples/constraints/pass_input_permissive_constraints.yaml -> build/lib/pele_platform/Examples/constraints
2022-02-14T12:48:39,157   creating build/lib/pele_platform/Examples/covalent_docking
2022-02-14T12:48:39,159   copying pele_platform/Examples/covalent_docking/5XXD_prepared.pdb -> build/lib/pele_platform/Examples/covalent_docking
2022-02-14T12:48:39,217   copying pele_platform/Examples/covalent_docking/6M06_prepared.pdb -> build/lib/pele_platform/Examples/covalent_docking
2022-02-14T12:48:39,271   copying pele_platform/Examples/covalent_docking/6P0M_prepared.pdb -> build/lib/pele_platform/Examples/covalent_docking
2022-02-14T12:48:39,308   copying pele_platform/Examples/covalent_docking/input1.yaml -> build/lib/pele_platform/Examples/covalent_docking
2022-02-14T12:48:39,314   copying pele_platform/Examples/covalent_docking/input2.yaml -> build/lib/pele_platform/Examples/covalent_docking
2022-02-14T12:48:39,321   copying pele_platform/Examples/covalent_docking/input3.yaml -> build/lib/pele_platform/Examples/covalent_docking
2022-02-14T12:48:39,327   copying pele_platform/Examples/covalent_docking/input_defaults.yaml -> build/lib/pele_platform/Examples/covalent_docking
2022-02-14T12:48:39,332   copying pele_platform/Examples/covalent_docking/input_defaults_refinement.yaml -> build/lib/pele_platform/Examples/covalent_docking
2022-02-14T12:48:39,336   creating build/lib/pele_platform/Examples/enzyme_engineering
2022-02-14T12:48:39,338   copying pele_platform/Examples/enzyme_engineering/restart_saturated_mutagenesis.yaml -> build/lib/pele_platform/Examples/enzyme_engineering
2022-02-14T12:48:39,343   copying pele_platform/Examples/enzyme_engineering/saturated_mutagenesis.yaml -> build/lib/pele_platform/Examples/enzyme_engineering
2022-02-14T12:48:39,347   copying pele_platform/Examples/enzyme_engineering/wrong_cpus.yaml -> build/lib/pele_platform/Examples/enzyme_engineering
2022-02-14T12:48:39,353   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart
2022-02-14T12:48:39,356   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/completed_mutations.log -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart
2022-02-14T12:48:39,362   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2022-02-14T12:48:39,365   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/ANL.mae -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2022-02-14T12:48:39,371   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/adaptive.conf -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2022-02-14T12:48:39,376   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/pele.conf -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2022-02-14T12:48:39,382   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/restart_saturated_mutagenesis.yaml -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2022-02-14T12:48:39,387   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal
2022-02-14T12:48:39,387   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/LigandRotamerLibs
2022-02-14T12:48:39,391   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/LigandRotamerLibs/ANL.rot.assign -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/LigandRotamerLibs
2022-02-14T12:48:39,398   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates
2022-02-14T12:48:39,399   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005
2022-02-14T12:48:39,401   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005/HeteroAtoms
2022-02-14T12:48:39,404   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005/HeteroAtoms/anlz -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005/HeteroAtoms
2022-02-14T12:48:39,411   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2022-02-14T12:48:39,413   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454A.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2022-02-14T12:48:39,474   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454A_processed.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2022-02-14T12:48:39,538   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454D.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2022-02-14T12:48:39,602   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454D_processed.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2022-02-14T12:48:39,666   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/ligand.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2022-02-14T12:48:39,672   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/receptor.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2022-02-14T12:48:39,733   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output
2022-02-14T12:48:39,734   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/originalControlFile.conf -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output
2022-02-14T12:48:39,740   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0
2022-02-14T12:48:39,742   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/topologyMapping.txt -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0
2022-02-14T12:48:39,747   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering
2022-02-14T12:48:39,748   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering/object.pkl -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering
2022-02-14T12:48:39,754   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering/summary.txt -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering
2022-02-14T12:48:39,758   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2022-02-14T12:48:39,760   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/report_1 -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2022-02-14T12:48:39,765   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/report_3 -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2022-02-14T12:48:39,770   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/trajectory_1.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2022-02-14T12:48:39,897   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/trajectory_3.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2022-02-14T12:48:40,014   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2022-02-14T12:48:40,018   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/report_2 -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2022-02-14T12:48:40,026   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/report_4 -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2022-02-14T12:48:40,035   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/trajectory_2.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2022-02-14T12:48:40,155   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/trajectory_4.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2022-02-14T12:48:40,274   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/synchronization
2022-02-14T12:48:40,276   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/synchronization/syncFile.lock -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/synchronization
2022-02-14T12:48:40,281   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2022-02-14T12:48:40,283   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies/topologies.pkl -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2022-02-14T12:48:40,387   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies/topology_0.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2022-02-14T12:48:40,451   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies/topology_1.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2022-02-14T12:48:40,514   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2022-02-14T12:48:40,517   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output/controlFile0.conf -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2022-02-14T12:48:40,525   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output/initial_0_0.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2022-02-14T12:48:40,584   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output/initial_0_1.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2022-02-14T12:48:40,644   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2022-02-14T12:48:40,646   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/ANL.mae -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2022-02-14T12:48:40,651   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/adaptive.conf -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2022-02-14T12:48:40,656   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/pele.conf -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2022-02-14T12:48:40,661   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/restart_saturated_mutagenesis.yaml -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2022-02-14T12:48:40,666   creating build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2022-02-14T12:48:40,667   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/T454E.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2022-02-14T12:48:40,727   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/T454E_processed.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2022-02-14T12:48:40,786   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/ligand.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2022-02-14T12:48:40,791   copying pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/receptor.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2022-02-14T12:48:40,850   creating build/lib/pele_platform/Examples/enzyme_engineering/pdb_files
2022-02-14T12:48:40,852   copying pele_platform/Examples/enzyme_engineering/pdb_files/T454A.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/pdb_files
2022-02-14T12:48:40,911   copying pele_platform/Examples/enzyme_engineering/pdb_files/T454D.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/pdb_files
2022-02-14T12:48:40,972   copying pele_platform/Examples/enzyme_engineering/pdb_files/T454E.pdb -> build/lib/pele_platform/Examples/enzyme_engineering/pdb_files
2022-02-14T12:48:41,035   creating build/lib/pele_platform/Examples/exit
2022-02-14T12:48:41,038   copying pele_platform/Examples/exit/input.yaml -> build/lib/pele_platform/Examples/exit
2022-02-14T12:48:41,043   copying pele_platform/Examples/exit/input_defaults.yaml -> build/lib/pele_platform/Examples/exit
2022-02-14T12:48:41,051   creating build/lib/pele_platform/Examples/exit_soft
2022-02-14T12:48:41,054   copying pele_platform/Examples/exit_soft/input.yaml -> build/lib/pele_platform/Examples/exit_soft
2022-02-14T12:48:41,063   copying pele_platform/Examples/exit_soft/input_defaults.yaml -> build/lib/pele_platform/Examples/exit_soft
2022-02-14T12:48:41,069   creating build/lib/pele_platform/Examples/flags
2022-02-14T12:48:41,072   copying pele_platform/Examples/flags/input.yaml -> build/lib/pele_platform/Examples/flags
2022-02-14T12:48:41,078   creating build/lib/pele_platform/Examples/frag
2022-02-14T12:48:41,081   copying pele_platform/Examples/frag/1dyi_no_waters.pdb -> build/lib/pele_platform/Examples/frag
2022-02-14T12:48:41,106   copying pele_platform/Examples/frag/1dyi_waters.pdb -> build/lib/pele_platform/Examples/frag
2022-02-14T12:48:41,134   copying pele_platform/Examples/frag/1w7h_preparation_structure_2w.pdb -> build/lib/pele_platform/Examples/frag
2022-02-14T12:48:41,184   copying pele_platform/Examples/frag/1w7h_preparation_structure_2w_processed.pdb -> build/lib/pele_platform/Examples/frag
2022-02-14T12:48:41,235   copying pele_platform/Examples/frag/amino.pdb -> build/lib/pele_platform/Examples/frag
2022-02-14T12:48:41,240   copying pele_platform/Examples/frag/analysis.conf -> build/lib/pele_platform/Examples/frag
2022-02-14T12:48:41,244   copying pele_platform/Examples/frag/core.pdb -> build/lib/pele_platform/Examples/frag
2022-02-14T12:48:41,249   copying pele_platform/Examples/frag/flags.conf -> build/lib/pele_platform/Examples/frag
2022-02-14T12:48:41,256   copying pele_platform/Examples/frag/input_ai.yaml -> build/lib/pele_platform/Examples/frag
2022-02-14T12:48:41,262   copying pele_platform/Examples/frag/input_core.yaml -> build/lib/pele_platform/Examples/frag
2022-02-14T12:48:41,268   copying pele_platform/Examples/frag/input_core_bond.yaml -> build/lib/pele_platform/Examples/frag
2022-02-14T12:48:41,273   copying pele_platform/Examples/frag/input_core_sdf.yaml -> build/lib/pele_platform/Examples/frag
2022-02-14T12:48:41,277   copying pele_platform/Examples/frag/input_flags.yaml -> build/lib/pele_platform/Examples/frag
2022-02-14T12:48:41,282   copying pele_platform/Examples/frag/input_frag_waters.yaml -> build/lib/pele_platform/Examples/frag
2022-02-14T12:48:41,286   copying pele_platform/Examples/frag/input_fragment_atom.yaml -> build/lib/pele_platform/Examples/frag
2022-02-14T12:48:41,292   copying pele_platform/Examples/frag/input_lib_pdb.yaml -> build/lib/pele_platform/Examples/frag
2022-02-14T12:48:41,298   copying pele_platform/Examples/frag/input_lib_sdf.yaml -> build/lib/pele_platform/Examples/frag
2022-02-14T12:48:41,305   copying pele_platform/Examples/frag/input_point_analysis.yaml -> build/lib/pele_platform/Examples/frag
2022-02-14T12:48:41,310   copying pele_platform/Examples/frag/input_sim.yaml -> build/lib/pele_platform/Examples/frag
2022-02-14T12:48:41,315   copying pele_platform/Examples/frag/input_sim_xtc.yaml -> build/lib/pele_platform/Examples/frag
2022-02-14T12:48:41,319   copying pele_platform/Examples/frag/input_symmetry.yaml -> build/lib/pele_platform/Examples/frag
2022-02-14T12:48:41,324   copying pele_platform/Examples/frag/ligands.sdf -> build/lib/pele_platform/Examples/frag
2022-02-14T12:48:41,329   copying pele_platform/Examples/frag/ligands_water.sdf -> build/lib/pele_platform/Examples/frag
2022-02-14T12:48:41,336   copying pele_platform/Examples/frag/sequential.conf -> build/lib/pele_platform/Examples/frag
2022-02-14T12:48:41,342   creating build/lib/pele_platform/Examples/frag/analysis_data
2022-02-14T12:48:41,344   creating build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1
2022-02-14T12:48:41,345   creating build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2022-02-14T12:48:41,349   copying pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result/report_1 -> build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2022-02-14T12:48:41,355   copying pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result/report_2 -> build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2022-02-14T12:48:41,362   copying pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result/trajectory_1.pdb -> build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2022-02-14T12:48:41,456   copying pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result/trajectory_2.pdb -> build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2022-02-14T12:48:41,548   creating build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result
2022-02-14T12:48:41,552   copying pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result/epochsampling_result_trajectory_1.1_BindingEnergy-23.4636.pdb -> build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result
2022-02-14T12:48:41,604   copying pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result/epochsampling_result_trajectory_2.1_BindingEnergy-25.1634.pdb -> build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result
2022-02-14T12:48:41,653   creating build/lib/pele_platform/Examples/frag/checker
2022-02-14T12:48:41,657   copying pele_platform/Examples/frag/checker/4RFM_proc.pdb -> build/lib/pele_platform/Examples/frag/checker
2022-02-14T12:48:41,666   copying pele_platform/Examples/frag/checker/4RFM_series.sdf -> build/lib/pele_platform/Examples/frag/checker
2022-02-14T12:48:41,674   copying pele_platform/Examples/frag/checker/receptor.sdf -> build/lib/pele_platform/Examples/frag/checker
2022-02-14T12:48:41,706   creating build/lib/pele_platform/Examples/frag/pdb_test_lib
2022-02-14T12:48:41,710   copying pele_platform/Examples/frag/pdb_test_lib/mol1.pdb -> build/lib/pele_platform/Examples/frag/pdb_test_lib
2022-02-14T12:48:41,718   copying pele_platform/Examples/frag/pdb_test_lib/mol2.pdb -> build/lib/pele_platform/Examples/frag/pdb_test_lib
2022-02-14T12:48:41,726   creating build/lib/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:41,730   copying pele_platform/Examples/frag/sdf_joiner/13_serie.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:41,744   copying pele_platform/Examples/frag/sdf_joiner/4RFM_core_sc.pdb -> build/lib/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:41,792   copying pele_platform/Examples/frag/sdf_joiner/4RFM_proc.pdb -> build/lib/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:41,840   copying pele_platform/Examples/frag/sdf_joiner/4RFM_series.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:41,849   copying pele_platform/Examples/frag/sdf_joiner/core2.pdb -> build/lib/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:41,889   copying pele_platform/Examples/frag/sdf_joiner/core3.pdb -> build/lib/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:41,907   copying pele_platform/Examples/frag/sdf_joiner/frag.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:41,914   copying pele_platform/Examples/frag/sdf_joiner/frag.yml -> build/lib/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:41,918   copying pele_platform/Examples/frag/sdf_joiner/frag2.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:41,930   copying pele_platform/Examples/frag/sdf_joiner/frag2.yml -> build/lib/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:41,936   copying pele_platform/Examples/frag/sdf_joiner/frag3.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:41,947   copying pele_platform/Examples/frag/sdf_joiner/frag3.yml -> build/lib/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:41,951   copying pele_platform/Examples/frag/sdf_joiner/frag31.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:41,960   copying pele_platform/Examples/frag/sdf_joiner/frag4.yml -> build/lib/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:41,967   copying pele_platform/Examples/frag/sdf_joiner/frag5.yml -> build/lib/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:41,973   copying pele_platform/Examples/frag/sdf_joiner/glide-dockSARS_core.pdb -> build/lib/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:42,052   creating build/lib/pele_platform/Examples/frag/sdf_test_lib
2022-02-14T12:48:42,055   copying pele_platform/Examples/frag/sdf_test_lib/test_library.sdf -> build/lib/pele_platform/Examples/frag/sdf_test_lib
2022-02-14T12:48:42,062   creating build/lib/pele_platform/Examples/global
2022-02-14T12:48:42,065   copying pele_platform/Examples/global/input.yaml -> build/lib/pele_platform/Examples/global
2022-02-14T12:48:42,072   copying pele_platform/Examples/global/input_defaults.yaml -> build/lib/pele_platform/Examples/global
2022-02-14T12:48:42,078   copying pele_platform/Examples/global/input_inputs.yaml -> build/lib/pele_platform/Examples/global
2022-02-14T12:48:42,084   copying pele_platform/Examples/global/input_inputs_asterisc.yaml -> build/lib/pele_platform/Examples/global
2022-02-14T12:48:42,088   creating build/lib/pele_platform/Examples/gpcr
2022-02-14T12:48:42,090   copying pele_platform/Examples/gpcr/complex.pdb -> build/lib/pele_platform/Examples/gpcr
2022-02-14T12:48:42,133   copying pele_platform/Examples/gpcr/complex_processed.pdb -> build/lib/pele_platform/Examples/gpcr
2022-02-14T12:48:42,187   copying pele_platform/Examples/gpcr/input.yaml -> build/lib/pele_platform/Examples/gpcr
2022-02-14T12:48:42,202   copying pele_platform/Examples/gpcr/input_atom_error.yaml -> build/lib/pele_platform/Examples/gpcr
2022-02-14T12:48:42,208   copying pele_platform/Examples/gpcr/input_defaults.yaml -> build/lib/pele_platform/Examples/gpcr
2022-02-14T12:48:42,215   copying pele_platform/Examples/gpcr/input_defaults2.yaml -> build/lib/pele_platform/Examples/gpcr
2022-02-14T12:48:42,221   creating build/lib/pele_platform/Examples/induced_fit
2022-02-14T12:48:42,224   copying pele_platform/Examples/induced_fit/input_auto_clustering.yaml -> build/lib/pele_platform/Examples/induced_fit
2022-02-14T12:48:42,229   copying pele_platform/Examples/induced_fit/input_exhaustive.yaml -> build/lib/pele_platform/Examples/induced_fit
2022-02-14T12:48:42,234   copying pele_platform/Examples/induced_fit/input_exhaustive_defaults.yaml -> build/lib/pele_platform/Examples/induced_fit
2022-02-14T12:48:42,239   copying pele_platform/Examples/induced_fit/input_fast.yaml -> build/lib/pele_platform/Examples/induced_fit
2022-02-14T12:48:42,244   copying pele_platform/Examples/induced_fit/input_fast_defaults.yaml -> build/lib/pele_platform/Examples/induced_fit
2022-02-14T12:48:42,251   copying pele_platform/Examples/induced_fit/input_mae.yaml -> build/lib/pele_platform/Examples/induced_fit
2022-02-14T12:48:42,257   creating build/lib/pele_platform/Examples/inputs
2022-02-14T12:48:42,259   copying pele_platform/Examples/inputs/input.yaml -> build/lib/pele_platform/Examples/inputs
2022-02-14T12:48:42,266   copying pele_platform/Examples/inputs/mn4.sl -> build/lib/pele_platform/Examples/inputs
2022-02-14T12:48:42,271   copying pele_platform/Examples/inputs/nord3.sge -> build/lib/pele_platform/Examples/inputs
2022-02-14T12:48:42,275   creating build/lib/pele_platform/Examples/interaction_restrictions
2022-02-14T12:48:42,277   copying pele_platform/Examples/interaction_restrictions/complex.pdb -> build/lib/pele_platform/Examples/interaction_restrictions
2022-02-14T12:48:42,342   copying pele_platform/Examples/interaction_restrictions/input.yaml -> build/lib/pele_platform/Examples/interaction_restrictions
2022-02-14T12:48:42,349   copying pele_platform/Examples/interaction_restrictions/input_error.yaml -> build/lib/pele_platform/Examples/interaction_restrictions
2022-02-14T12:48:42,355   copying pele_platform/Examples/interaction_restrictions/input_error_2.yaml -> build/lib/pele_platform/Examples/interaction_restrictions
2022-02-14T12:48:42,361   creating build/lib/pele_platform/Examples/interaction_restrictions/out
2022-02-14T12:48:42,364   copying pele_platform/Examples/interaction_restrictions/out/expected_conditions.txt -> build/lib/pele_platform/Examples/interaction_restrictions/out
2022-02-14T12:48:42,370   copying pele_platform/Examples/interaction_restrictions/out/expected_metrics.txt -> build/lib/pele_platform/Examples/interaction_restrictions/out
2022-02-14T12:48:42,374   creating build/lib/pele_platform/Examples/ligand_conformations
2022-02-14T12:48:42,376   copying pele_platform/Examples/ligand_conformations/1.pdb -> build/lib/pele_platform/Examples/ligand_conformations
2022-02-14T12:48:42,381   copying pele_platform/Examples/ligand_conformations/2.pdb -> build/lib/pele_platform/Examples/ligand_conformations
2022-02-14T12:48:42,387   copying pele_platform/Examples/ligand_conformations/3.pdb -> build/lib/pele_platform/Examples/ligand_conformations
2022-02-14T12:48:42,405   copying pele_platform/Examples/ligand_conformations/input.yaml -> build/lib/pele_platform/Examples/ligand_conformations
2022-02-14T12:48:42,411   creating build/lib/pele_platform/Examples/minimum_steps
2022-02-14T12:48:42,413   copying pele_platform/Examples/minimum_steps/complex.pdb -> build/lib/pele_platform/Examples/minimum_steps
2022-02-14T12:48:43,133   copying pele_platform/Examples/minimum_steps/input.yaml -> build/lib/pele_platform/Examples/minimum_steps
2022-02-14T12:48:43,139   creating build/lib/pele_platform/Examples/out_in
2022-02-14T12:48:43,142   copying pele_platform/Examples/out_in/1_3ZON_complex.pdb -> build/lib/pele_platform/Examples/out_in
2022-02-14T12:48:44,197   copying pele_platform/Examples/out_in/input.yaml -> build/lib/pele_platform/Examples/out_in
2022-02-14T12:48:44,205   copying pele_platform/Examples/out_in/input_auto_clustering.yaml -> build/lib/pele_platform/Examples/out_in
2022-02-14T12:48:44,213   copying pele_platform/Examples/out_in/input_box_center.yaml -> build/lib/pele_platform/Examples/out_in
2022-02-14T12:48:44,221   copying pele_platform/Examples/out_in/input_default.yaml -> build/lib/pele_platform/Examples/out_in
2022-02-14T12:48:44,227   copying pele_platform/Examples/out_in/input_flag_error.yaml -> build/lib/pele_platform/Examples/out_in
2022-02-14T12:48:44,233   copying pele_platform/Examples/out_in/input_metrics.yaml -> build/lib/pele_platform/Examples/out_in
2022-02-14T12:48:44,239   creating build/lib/pele_platform/Examples/pca
2022-02-14T12:48:44,242   copying pele_platform/Examples/pca/1.pdb -> build/lib/pele_platform/Examples/pca
2022-02-14T12:48:44,284   copying pele_platform/Examples/pca/2.pdb -> build/lib/pele_platform/Examples/pca
2022-02-14T12:48:44,326   copying pele_platform/Examples/pca/3.pdb -> build/lib/pele_platform/Examples/pca
2022-02-14T12:48:44,369   copying pele_platform/Examples/pca/input.yaml -> build/lib/pele_platform/Examples/pca
2022-02-14T12:48:44,375   copying pele_platform/Examples/pca/input_str.yaml -> build/lib/pele_platform/Examples/pca
2022-02-14T12:48:44,380   creating build/lib/pele_platform/Examples/preparation
2022-02-14T12:48:44,383   copying pele_platform/Examples/preparation/6qmk_correct.pdb -> build/lib/pele_platform/Examples/preparation
2022-02-14T12:48:44,430   copying pele_platform/Examples/preparation/6qmk_repeated.pdb -> build/lib/pele_platform/Examples/preparation
2022-02-14T12:48:44,484   copying pele_platform/Examples/preparation/complex.pdb -> build/lib/pele_platform/Examples/preparation
2022-02-14T12:48:44,522   copying pele_platform/Examples/preparation/complex_2.pdb -> build/lib/pele_platform/Examples/preparation
2022-02-14T12:48:44,582   copying pele_platform/Examples/preparation/input.yaml -> build/lib/pele_platform/Examples/preparation
2022-02-14T12:48:44,589   copying pele_platform/Examples/preparation/input_nonstandard.yaml -> build/lib/pele_platform/Examples/preparation
2022-02-14T12:48:44,595   copying pele_platform/Examples/preparation/input_space.yaml -> build/lib/pele_platform/Examples/preparation
2022-02-14T12:48:44,602   copying pele_platform/Examples/preparation/parametrization_flags.yaml -> build/lib/pele_platform/Examples/preparation
2022-02-14T12:48:44,608   creating build/lib/pele_platform/Examples/production
2022-02-14T12:48:44,611   copying pele_platform/Examples/production/input.sl -> build/lib/pele_platform/Examples/production
2022-02-14T12:48:44,618   copying pele_platform/Examples/production/input_mae.yaml -> build/lib/pele_platform/Examples/production
2022-02-14T12:48:44,624   creating build/lib/pele_platform/Examples/randomize
2022-02-14T12:48:44,627   copying pele_platform/Examples/randomize/ligand1.pdb -> build/lib/pele_platform/Examples/randomize
2022-02-14T12:48:44,633   copying pele_platform/Examples/randomize/ligand2.pdb -> build/lib/pele_platform/Examples/randomize
2022-02-14T12:48:44,638   copying pele_platform/Examples/randomize/ligand3.pdb -> build/lib/pele_platform/Examples/randomize
2022-02-14T12:48:44,644   copying pele_platform/Examples/randomize/receptor.pdb -> build/lib/pele_platform/Examples/randomize
2022-02-14T12:48:44,695   copying pele_platform/Examples/randomize/ref_ligand.pdb -> build/lib/pele_platform/Examples/randomize
2022-02-14T12:48:44,700   creating build/lib/pele_platform/Examples/rescoring
2022-02-14T12:48:44,702   copying pele_platform/Examples/rescoring/input.yaml -> build/lib/pele_platform/Examples/rescoring
2022-02-14T12:48:44,707   copying pele_platform/Examples/rescoring/input_defaults.yaml -> build/lib/pele_platform/Examples/rescoring
2022-02-14T12:48:44,713   creating build/lib/pele_platform/Examples/restart
2022-02-14T12:48:44,715   copying pele_platform/Examples/restart/restart.yaml -> build/lib/pele_platform/Examples/restart
2022-02-14T12:48:44,722   creating build/lib/pele_platform/Examples/singularity
2022-02-14T12:48:44,725   copying pele_platform/Examples/singularity/input_adaptive.yaml -> build/lib/pele_platform/Examples/singularity
2022-02-14T12:48:44,732   copying pele_platform/Examples/singularity/input_adaptive_mpi_params.yaml -> build/lib/pele_platform/Examples/singularity
2022-02-14T12:48:44,739   copying pele_platform/Examples/singularity/input_frag.yaml -> build/lib/pele_platform/Examples/singularity
2022-02-14T12:48:44,745   creating build/lib/pele_platform/Examples/site_finder
2022-02-14T12:48:44,748   copying pele_platform/Examples/site_finder/complex.pdb -> build/lib/pele_platform/Examples/site_finder
2022-02-14T12:48:44,794   copying pele_platform/Examples/site_finder/global.yaml -> build/lib/pele_platform/Examples/site_finder
2022-02-14T12:48:44,799   copying pele_platform/Examples/site_finder/input_custom_box.yaml -> build/lib/pele_platform/Examples/site_finder
2022-02-14T12:48:44,804   copying pele_platform/Examples/site_finder/input_folder.yaml -> build/lib/pele_platform/Examples/site_finder
2022-02-14T12:48:44,809   copying pele_platform/Examples/site_finder/input_global.yaml -> build/lib/pele_platform/Examples/site_finder
2022-02-14T12:48:44,815   copying pele_platform/Examples/site_finder/input_global_xtc.yaml -> build/lib/pele_platform/Examples/site_finder
2022-02-14T12:48:44,822   copying pele_platform/Examples/site_finder/input_restart.yaml -> build/lib/pele_platform/Examples/site_finder
2022-02-14T12:48:44,829   copying pele_platform/Examples/site_finder/input_skipref.yaml -> build/lib/pele_platform/Examples/site_finder
2022-02-14T12:48:44,836   copying pele_platform/Examples/site_finder/local.yaml -> build/lib/pele_platform/Examples/site_finder
2022-02-14T12:48:44,842   creating build/lib/pele_platform/Examples/tutorials
2022-02-14T12:48:44,844   creating build/lib/pele_platform/Examples/tutorials/gpcr
2022-02-14T12:48:44,847   copying pele_platform/Examples/tutorials/gpcr/complex.pdb -> build/lib/pele_platform/Examples/tutorials/gpcr
2022-02-14T12:48:44,892   copying pele_platform/Examples/tutorials/gpcr/input.yaml -> build/lib/pele_platform/Examples/tutorials/gpcr
2022-02-14T12:48:44,899   creating build/lib/pele_platform/Examples/tutorials/induced_fit
2022-02-14T12:48:44,902   copying pele_platform/Examples/tutorials/induced_fit/docking.pdb -> build/lib/pele_platform/Examples/tutorials/induced_fit
2022-02-14T12:48:44,969   copying pele_platform/Examples/tutorials/induced_fit/input.yaml -> build/lib/pele_platform/Examples/tutorials/induced_fit
2022-02-14T12:48:44,973   creating build/lib/pele_platform/Examples/tutorials/ppi
2022-02-14T12:48:44,976   copying pele_platform/Examples/tutorials/ppi/4yy6_ligand.pdb -> build/lib/pele_platform/Examples/tutorials/ppi
2022-02-14T12:48:44,984   copying pele_platform/Examples/tutorials/ppi/4yy6_prep.pdb -> build/lib/pele_platform/Examples/tutorials/ppi
2022-02-14T12:48:45,011   copying pele_platform/Examples/tutorials/ppi/input.yaml -> build/lib/pele_platform/Examples/tutorials/ppi
2022-02-14T12:48:45,017   creating build/lib/pele_platform/Examples/water
2022-02-14T12:48:45,020   copying pele_platform/Examples/water/complex_induced.pdb -> build/lib/pele_platform/Examples/water
2022-02-14T12:48:45,042   copying pele_platform/Examples/water/complex_ref_LESSH2O.pdb -> build/lib/pele_platform/Examples/water
2022-02-14T12:48:45,091   copying pele_platform/Examples/water/input_all.yaml -> build/lib/pele_platform/Examples/water
2022-02-14T12:48:45,097   copying pele_platform/Examples/water/input_bs.yaml -> build/lib/pele_platform/Examples/water
2022-02-14T12:48:45,104   copying pele_platform/Examples/water/input_bs_defaults.yaml -> build/lib/pele_platform/Examples/water
2022-02-14T12:48:45,110   copying pele_platform/Examples/water/input_induced.yaml -> build/lib/pele_platform/Examples/water
2022-02-14T12:48:45,117   copying pele_platform/Examples/water/input_lig.yaml -> build/lib/pele_platform/Examples/water
2022-02-14T12:48:45,122   copying pele_platform/Examples/water/input_lig_defaults.yaml -> build/lib/pele_platform/Examples/water
2022-02-14T12:48:45,127   copying pele_platform/Examples/water/input_nwaters.yaml -> build/lib/pele_platform/Examples/water
2022-02-14T12:48:45,131   copying pele_platform/Examples/water/input_previous_water.yaml -> build/lib/pele_platform/Examples/water
2022-02-14T12:48:45,136   copying pele_platform/Examples/water/water2_pele.conf -> build/lib/pele_platform/Examples/water
2022-02-14T12:48:45,143   copying pele_platform/Examples/water/water_pele.conf -> build/lib/pele_platform/Examples/water
2022-02-14T12:48:45,151   copying pele_platform/Examples/water/water_processed.pdb -> build/lib/pele_platform/Examples/water
2022-02-14T12:48:45,202   creating build/lib/pele_platform/Templates
2022-02-14T12:48:45,205   copying pele_platform/Templates/pele_template.conf -> build/lib/pele_platform/Templates
2022-02-14T12:48:45,212   copying pele_platform/Templates/solventParamsHCTOBC.txt -> build/lib/pele_platform/Templates
2022-02-14T12:48:45,226   copying pele_platform/Templates/template_adaptive.conf -> build/lib/pele_platform/Templates
2022-02-14T12:48:45,274   UPDATING build/lib/pele_platform/_version.py
2022-02-14T12:48:45,276   set build/lib/pele_platform/_version.py to '1.6.3'
2022-02-14T12:48:45,283   installing to build/bdist.linux-armv7l/wheel
2022-02-14T12:48:45,284   running install
2022-02-14T12:48:45,286   running install_lib
2022-02-14T12:48:45,294   creating build/bdist.linux-armv7l
2022-02-14T12:48:45,295   creating build/bdist.linux-armv7l/wheel
2022-02-14T12:48:45,298   creating build/bdist.linux-armv7l/wheel/pele_platform
2022-02-14T12:48:45,301   creating build/bdist.linux-armv7l/wheel/pele_platform/analysis
2022-02-14T12:48:45,304   copying build/lib/pele_platform/analysis/pdf_report.py -> build/bdist.linux-armv7l/wheel/pele_platform/analysis
2022-02-14T12:48:45,308   copying build/lib/pele_platform/analysis/data.py -> build/bdist.linux-armv7l/wheel/pele_platform/analysis
2022-02-14T12:48:45,316   copying build/lib/pele_platform/analysis/interactive_plot.py -> build/bdist.linux-armv7l/wheel/pele_platform/analysis
2022-02-14T12:48:45,323   copying build/lib/pele_platform/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/analysis
2022-02-14T12:48:45,329   copying build/lib/pele_platform/analysis/plot.py -> build/bdist.linux-armv7l/wheel/pele_platform/analysis
2022-02-14T12:48:45,336   copying build/lib/pele_platform/analysis/analysis.py -> build/bdist.linux-armv7l/wheel/pele_platform/analysis
2022-02-14T12:48:45,350   copying build/lib/pele_platform/analysis/clustering.py -> build/bdist.linux-armv7l/wheel/pele_platform/analysis
2022-02-14T12:48:45,359   creating build/bdist.linux-armv7l/wheel/pele_platform/site_finder
2022-02-14T12:48:45,361   copying build/lib/pele_platform/site_finder/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/site_finder
2022-02-14T12:48:45,368   copying build/lib/pele_platform/site_finder/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/site_finder
2022-02-14T12:48:45,375   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples
2022-02-14T12:48:45,379   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
2022-02-14T12:48:45,382   copying build/lib/pele_platform/Examples/analysis/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
2022-02-14T12:48:45,388   copying build/lib/pele_platform/Examples/analysis/input_flags.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
2022-02-14T12:48:45,393   copying build/lib/pele_platform/Examples/analysis/input_flags0.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
2022-02-14T12:48:45,400   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2022-02-14T12:48:45,403   copying build/lib/pele_platform/Examples/analysis/data/MG.rot.assign -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2022-02-14T12:48:45,408   copying build/lib/pele_platform/Examples/analysis/data/input_mae.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2022-02-14T12:48:45,413   copying build/lib/pele_platform/Examples/analysis/data/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2022-02-14T12:48:45,420   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/inputs
2022-02-14T12:48:45,422   copying build/lib/pele_platform/Examples/analysis/data/inputs/input1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/inputs
2022-02-14T12:48:45,460   copying build/lib/pele_platform/Examples/analysis/data/inputs/input2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/inputs
2022-02-14T12:48:45,498   copying build/lib/pele_platform/Examples/analysis/data/inputs/input3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/inputs
2022-02-14T12:48:45,539   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/empty_reports_output
2022-02-14T12:48:45,543   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/empty_reports_output/0
2022-02-14T12:48:45,546   copying build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0/report_2 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/empty_reports_output/0
2022-02-14T12:48:45,552   copying build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0/trajectory_2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/empty_reports_output/0
2022-02-14T12:48:45,668   copying build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0/topologyMapping.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/empty_reports_output/0
2022-02-14T12:48:45,672   copying build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0/report_1 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/empty_reports_output/0
2022-02-14T12:48:45,676   copying build/lib/pele_platform/Examples/analysis/data/empty_reports_output/0/trajectory_1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/empty_reports_output/0
2022-02-14T12:48:45,719   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output
2022-02-14T12:48:45,723   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/topologies
2022-02-14T12:48:45,726   copying build/lib/pele_platform/Examples/analysis/data/output/topologies/topology_0.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/topologies
2022-02-14T12:48:45,764   copying build/lib/pele_platform/Examples/analysis/data/output/topologies/topologies.pkl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/topologies
2022-02-14T12:48:45,796   copying build/lib/pele_platform/Examples/analysis/data/output/originalControlFile.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output
2022-02-14T12:48:45,801   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/synchronization
2022-02-14T12:48:45,803   copying build/lib/pele_platform/Examples/analysis/data/output/synchronization/syncFile.lock -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/synchronization
2022-02-14T12:48:45,809   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0
2022-02-14T12:48:45,813   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0/clustering
2022-02-14T12:48:45,816   copying build/lib/pele_platform/Examples/analysis/data/output/0/clustering/object.pkl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0/clustering
2022-02-14T12:48:45,856   copying build/lib/pele_platform/Examples/analysis/data/output/0/clustering/summary.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0/clustering
2022-02-14T12:48:45,862   copying build/lib/pele_platform/Examples/analysis/data/output/0/topologyMapping.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0
2022-02-14T12:48:45,867   copying build/lib/pele_platform/Examples/analysis/data/output/0/report_1 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0
2022-02-14T12:48:45,871   copying build/lib/pele_platform/Examples/analysis/data/output/0/trajectory_1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0
2022-02-14T12:48:45,910   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc
2022-02-14T12:48:45,914   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/topologies
2022-02-14T12:48:45,917   copying build/lib/pele_platform/Examples/analysis/data/xtc/topologies/topology_0.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/topologies
2022-02-14T12:48:45,933   copying build/lib/pele_platform/Examples/analysis/data/xtc/summary.csv -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc
2022-02-14T12:48:45,940   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/0
2022-02-14T12:48:45,943   copying build/lib/pele_platform/Examples/analysis/data/xtc/0/report_2 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/0
2022-02-14T12:48:45,949   copying build/lib/pele_platform/Examples/analysis/data/xtc/0/report_1 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/0
2022-02-14T12:48:45,953   copying build/lib/pele_platform/Examples/analysis/data/xtc/0/trajectory_1.xtc -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/0
2022-02-14T12:48:45,958   copying build/lib/pele_platform/Examples/analysis/data/xtc/0/trajectory_2.xtc -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/0
2022-02-14T12:48:45,963   copying build/lib/pele_platform/Examples/analysis/data/STR.rot.assign -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2022-02-14T12:48:45,967   copying build/lib/pele_platform/Examples/analysis/data/pele.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2022-02-14T12:48:45,971   copying build/lib/pele_platform/Examples/analysis/data/input_flags.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2022-02-14T12:48:45,976   copying build/lib/pele_platform/Examples/analysis/data/input_flags0.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2022-02-14T12:48:45,981   copying build/lib/pele_platform/Examples/analysis/data/adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2022-02-14T12:48:45,987   copying build/lib/pele_platform/Examples/analysis/data/strz -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2022-02-14T12:48:45,991   copying build/lib/pele_platform/Examples/analysis/data/mgz -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2022-02-14T12:48:45,995   copying build/lib/pele_platform/Examples/analysis/input_xtc.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
2022-02-14T12:48:46,000   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2022-02-14T12:48:46,002   copying build/lib/pele_platform/Examples/checker/complex2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2022-02-14T12:48:46,027   copying build/lib/pele_platform/Examples/checker/input_unk.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2022-02-14T12:48:46,033   copying build/lib/pele_platform/Examples/checker/ligand2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2022-02-14T12:48:46,038   copying build/lib/pele_platform/Examples/checker/multiple_simulations.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2022-02-14T12:48:46,042   copying build/lib/pele_platform/Examples/checker/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2022-02-14T12:48:46,046   copying build/lib/pele_platform/Examples/checker/input_atom_string.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2022-02-14T12:48:46,049   copying build/lib/pele_platform/Examples/checker/incompatible_flags.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2022-02-14T12:48:46,054   copying build/lib/pele_platform/Examples/checker/input_env.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2022-02-14T12:48:46,059   copying build/lib/pele_platform/Examples/checker/input_map_atom_str.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2022-02-14T12:48:46,064   copying build/lib/pele_platform/Examples/checker/capped.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2022-02-14T12:48:46,202   copying build/lib/pele_platform/Examples/checker/input_tab.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2022-02-14T12:48:46,208   copying build/lib/pele_platform/Examples/checker/input_pele_exec.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2022-02-14T12:48:46,213   copying build/lib/pele_platform/Examples/checker/input_rotamer.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2022-02-14T12:48:46,218   copying build/lib/pele_platform/Examples/checker/complex_unk.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2022-02-14T12:48:46,285   copying build/lib/pele_platform/Examples/checker/input_template.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2022-02-14T12:48:46,291   copying build/lib/pele_platform/Examples/checker/input_space.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2022-02-14T12:48:46,296   copying build/lib/pele_platform/Examples/checker/negative_residues.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2022-02-14T12:48:46,302   copying build/lib/pele_platform/Examples/checker/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2022-02-14T12:48:46,349   copying build/lib/pele_platform/Examples/checker/input_underscore.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2022-02-14T12:48:46,354   copying build/lib/pele_platform/Examples/checker/input_map_atom_num.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2022-02-14T12:48:46,360   copying build/lib/pele_platform/Examples/checker/capped_no_connects.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2022-02-14T12:48:46,497   copying build/lib/pele_platform/Examples/checker/mapping_complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2022-02-14T12:48:46,564   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2022-02-14T12:48:46,565   copying build/lib/pele_platform/Examples/site_finder/input_restart.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2022-02-14T12:48:46,570   copying build/lib/pele_platform/Examples/site_finder/input_global.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2022-02-14T12:48:46,574   copying build/lib/pele_platform/Examples/site_finder/input_global_xtc.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2022-02-14T12:48:46,578   copying build/lib/pele_platform/Examples/site_finder/global.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2022-02-14T12:48:46,583   copying build/lib/pele_platform/Examples/site_finder/input_skipref.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2022-02-14T12:48:46,589   copying build/lib/pele_platform/Examples/site_finder/input_folder.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2022-02-14T12:48:46,594   copying build/lib/pele_platform/Examples/site_finder/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2022-02-14T12:48:46,641   copying build/lib/pele_platform/Examples/site_finder/local.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2022-02-14T12:48:46,646   copying build/lib/pele_platform/Examples/site_finder/input_custom_box.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/site_finder
2022-02-14T12:48:46,653   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering
2022-02-14T12:48:46,656   copying build/lib/pele_platform/Examples/clustering/summary.csv -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering
2022-02-14T12:48:46,663   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2022-02-14T12:48:46,667   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0/clustering
2022-02-14T12:48:46,670   copying build/lib/pele_platform/Examples/clustering/0/clustering/object.pkl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0/clustering
2022-02-14T12:48:46,899   copying build/lib/pele_platform/Examples/clustering/0/clustering/summary.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0/clustering
2022-02-14T12:48:46,905   copying build/lib/pele_platform/Examples/clustering/0/report_2 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2022-02-14T12:48:46,910   copying build/lib/pele_platform/Examples/clustering/0/trajectory_2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2022-02-14T12:48:46,948   copying build/lib/pele_platform/Examples/clustering/0/topologyMapping.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2022-02-14T12:48:46,954   copying build/lib/pele_platform/Examples/clustering/0/trajectory_3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2022-02-14T12:48:47,024   copying build/lib/pele_platform/Examples/clustering/0/report_4 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2022-02-14T12:48:47,028   copying build/lib/pele_platform/Examples/clustering/0/report_1 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2022-02-14T12:48:47,032   copying build/lib/pele_platform/Examples/clustering/0/trajectory_1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2022-02-14T12:48:47,098   copying build/lib/pele_platform/Examples/clustering/0/report_3 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2022-02-14T12:48:47,102   copying build/lib/pele_platform/Examples/clustering/0/trajectory_4.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering/0
2022-02-14T12:48:47,171   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/production
2022-02-14T12:48:47,173   copying build/lib/pele_platform/Examples/production/input_mae.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/production
2022-02-14T12:48:47,179   copying build/lib/pele_platform/Examples/production/input.sl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/production
2022-02-14T12:48:47,186   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2022-02-14T12:48:47,189   copying build/lib/pele_platform/Examples/covalent_docking/6P0M_prepared.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2022-02-14T12:48:47,225   copying build/lib/pele_platform/Examples/covalent_docking/input1.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2022-02-14T12:48:47,230   copying build/lib/pele_platform/Examples/covalent_docking/5XXD_prepared.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2022-02-14T12:48:47,290   copying build/lib/pele_platform/Examples/covalent_docking/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2022-02-14T12:48:47,294   copying build/lib/pele_platform/Examples/covalent_docking/input2.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2022-02-14T12:48:47,298   copying build/lib/pele_platform/Examples/covalent_docking/input3.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2022-02-14T12:48:47,302   copying build/lib/pele_platform/Examples/covalent_docking/input_defaults_refinement.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2022-02-14T12:48:47,306   copying build/lib/pele_platform/Examples/covalent_docking/6M06_prepared.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/covalent_docking
2022-02-14T12:48:47,357   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit_soft
2022-02-14T12:48:47,360   copying build/lib/pele_platform/Examples/exit_soft/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit_soft
2022-02-14T12:48:47,365   copying build/lib/pele_platform/Examples/exit_soft/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit_soft
2022-02-14T12:48:47,372   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/inputs
2022-02-14T12:48:47,375   copying build/lib/pele_platform/Examples/inputs/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/inputs
2022-02-14T12:48:47,380   copying build/lib/pele_platform/Examples/inputs/nord3.sge -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/inputs
2022-02-14T12:48:47,386   copying build/lib/pele_platform/Examples/inputs/mn4.sl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/inputs
2022-02-14T12:48:47,393   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/bias
2022-02-14T12:48:47,394   copying build/lib/pele_platform/Examples/bias/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/bias
2022-02-14T12:48:47,398   copying build/lib/pele_platform/Examples/bias/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/bias
2022-02-14T12:48:47,436   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2022-02-14T12:48:47,437   copying build/lib/pele_platform/Examples/water/water2_pele.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2022-02-14T12:48:47,441   copying build/lib/pele_platform/Examples/water/input_lig_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2022-02-14T12:48:47,445   copying build/lib/pele_platform/Examples/water/input_lig.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2022-02-14T12:48:47,449   copying build/lib/pele_platform/Examples/water/input_bs_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2022-02-14T12:48:47,453   copying build/lib/pele_platform/Examples/water/complex_induced.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2022-02-14T12:48:47,472   copying build/lib/pele_platform/Examples/water/input_nwaters.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2022-02-14T12:48:47,478   copying build/lib/pele_platform/Examples/water/input_induced.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2022-02-14T12:48:47,483   copying build/lib/pele_platform/Examples/water/complex_ref_LESSH2O.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2022-02-14T12:48:47,531   copying build/lib/pele_platform/Examples/water/input_all.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2022-02-14T12:48:47,536   copying build/lib/pele_platform/Examples/water/water_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2022-02-14T12:48:47,585   copying build/lib/pele_platform/Examples/water/input_previous_water.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2022-02-14T12:48:47,589   copying build/lib/pele_platform/Examples/water/water_pele.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2022-02-14T12:48:47,594   copying build/lib/pele_platform/Examples/water/input_bs.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2022-02-14T12:48:47,601   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/rescoring
2022-02-14T12:48:47,603   copying build/lib/pele_platform/Examples/rescoring/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/rescoring
2022-02-14T12:48:47,609   copying build/lib/pele_platform/Examples/rescoring/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/rescoring
2022-02-14T12:48:47,615   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2022-02-14T12:48:47,618   copying build/lib/pele_platform/Examples/out_in/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2022-02-14T12:48:47,623   copying build/lib/pele_platform/Examples/out_in/input_metrics.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2022-02-14T12:48:47,629   copying build/lib/pele_platform/Examples/out_in/input_auto_clustering.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2022-02-14T12:48:47,634   copying build/lib/pele_platform/Examples/out_in/input_box_center.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2022-02-14T12:48:47,638   copying build/lib/pele_platform/Examples/out_in/1_3ZON_complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2022-02-14T12:48:47,676   copying build/lib/pele_platform/Examples/out_in/input_default.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2022-02-14T12:48:47,681   copying build/lib/pele_platform/Examples/out_in/input_flag_error.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2022-02-14T12:48:47,688   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2022-02-14T12:48:47,690   copying build/lib/pele_platform/Examples/Adaptive/pele_file_4Adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2022-02-14T12:48:47,697   copying build/lib/pele_platform/Examples/Adaptive/STR.rot.assign -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2022-02-14T12:48:47,700   copying build/lib/pele_platform/Examples/Adaptive/test.sl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2022-02-14T12:48:47,704   copying build/lib/pele_platform/Examples/Adaptive/adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2022-02-14T12:48:47,708   copying build/lib/pele_platform/Examples/Adaptive/strz -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2022-02-14T12:48:47,719   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/ligand_conformations
2022-02-14T12:48:47,721   copying build/lib/pele_platform/Examples/ligand_conformations/1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/ligand_conformations
2022-02-14T12:48:47,727   copying build/lib/pele_platform/Examples/ligand_conformations/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/ligand_conformations
2022-02-14T12:48:47,733   copying build/lib/pele_platform/Examples/ligand_conformations/3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/ligand_conformations
2022-02-14T12:48:47,739   copying build/lib/pele_platform/Examples/ligand_conformations/2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/ligand_conformations
2022-02-14T12:48:47,746   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2022-02-14T12:48:47,748   copying build/lib/pele_platform/Examples/pca/1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2022-02-14T12:48:47,791   copying build/lib/pele_platform/Examples/pca/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2022-02-14T12:48:47,796   copying build/lib/pele_platform/Examples/pca/3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2022-02-14T12:48:47,839   copying build/lib/pele_platform/Examples/pca/2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2022-02-14T12:48:47,881   copying build/lib/pele_platform/Examples/pca/input_str.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2022-02-14T12:48:47,888   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering
2022-02-14T12:48:47,890   copying build/lib/pele_platform/Examples/enzyme_engineering/wrong_cpus.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering
2022-02-14T12:48:47,897   copying build/lib/pele_platform/Examples/enzyme_engineering/saturated_mutagenesis.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering
2022-02-14T12:48:47,903   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/pdb_files
2022-02-14T12:48:47,905   copying build/lib/pele_platform/Examples/enzyme_engineering/pdb_files/T454E.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/pdb_files
2022-02-14T12:48:47,963   copying build/lib/pele_platform/Examples/enzyme_engineering/pdb_files/T454A.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/pdb_files
2022-02-14T12:48:48,023   copying build/lib/pele_platform/Examples/enzyme_engineering/pdb_files/T454D.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/pdb_files
2022-02-14T12:48:48,086   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart
2022-02-14T12:48:48,088   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/completed_mutations.log -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart
2022-02-14T12:48:48,093   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2022-02-14T12:48:48,096   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal
2022-02-14T12:48:48,100   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates
2022-02-14T12:48:48,104   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005
2022-02-14T12:48:48,109   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005/HeteroAtoms
2022-02-14T12:48:48,112   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005/HeteroAtoms/anlz -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/Templates/OPLS2005/HeteroAtoms
2022-02-14T12:48:48,121   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/LigandRotamerLibs
2022-02-14T12:48:48,124   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/LigandRotamerLibs/ANL.rot.assign -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/DataLocal/LigandRotamerLibs
2022-02-14T12:48:48,130   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/ANL.mae -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2022-02-14T12:48:48,137   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2022-02-14T12:48:48,140   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/ligand.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2022-02-14T12:48:48,146   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/receptor.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2022-02-14T12:48:48,208   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454A_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2022-02-14T12:48:48,271   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454A.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2022-02-14T12:48:48,334   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454D_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2022-02-14T12:48:48,397   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input/T454D.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/input
2022-02-14T12:48:48,461   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2022-02-14T12:48:48,463   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output/controlFile0.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2022-02-14T12:48:48,472   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output/initial_0_1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2022-02-14T12:48:48,533   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output/initial_0_0.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/tmp_output
2022-02-14T12:48:48,594   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output
2022-02-14T12:48:48,598   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2022-02-14T12:48:48,601   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/trajectory_3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2022-02-14T12:48:48,718   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/report_1 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2022-02-14T12:48:48,722   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/trajectory_1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2022-02-14T12:48:48,834   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A/report_3 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454A
2022-02-14T12:48:48,840   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2022-02-14T12:48:48,843   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/report_2 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2022-02-14T12:48:48,848   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/trajectory_2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2022-02-14T12:48:48,967   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/report_4 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2022-02-14T12:48:48,972   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D/trajectory_4.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/T454D
2022-02-14T12:48:49,092   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2022-02-14T12:48:49,095   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies/topology_1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2022-02-14T12:48:49,156   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies/topology_0.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2022-02-14T12:48:49,240   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies/topologies.pkl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/topologies
2022-02-14T12:48:49,346   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/originalControlFile.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output
2022-02-14T12:48:49,351   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/synchronization
2022-02-14T12:48:49,353   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/synchronization/syncFile.lock -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/synchronization
2022-02-14T12:48:49,359   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0
2022-02-14T12:48:49,364   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering
2022-02-14T12:48:49,367   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering/object.pkl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering
2022-02-14T12:48:49,372   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering/summary.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/clustering
2022-02-14T12:48:49,377   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0/topologyMapping.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/output/0
2022-02-14T12:48:49,381   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/pele.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2022-02-14T12:48:49,387   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/restart_saturated_mutagenesis.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2022-02-14T12:48:49,391   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1/adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_1
2022-02-14T12:48:49,396   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2022-02-14T12:48:49,399   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/ANL.mae -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2022-02-14T12:48:49,406   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2022-02-14T12:48:49,408   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/ligand.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2022-02-14T12:48:49,415   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/T454E.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2022-02-14T12:48:49,475   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/receptor.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2022-02-14T12:48:49,537   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input/T454E_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/input
2022-02-14T12:48:49,600   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/pele.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2022-02-14T12:48:49,605   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/restart_saturated_mutagenesis.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2022-02-14T12:48:49,611   copying build/lib/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2/adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering/directory_to_restart/Subset_2
2022-02-14T12:48:49,616   copying build/lib/pele_platform/Examples/enzyme_engineering/restart_saturated_mutagenesis.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/enzyme_engineering
2022-02-14T12:48:49,621   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2022-02-14T12:48:49,623   copying build/lib/pele_platform/Examples/RNA/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2022-02-14T12:48:49,627   copying build/lib/pele_platform/Examples/RNA/input_induced.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2022-02-14T12:48:49,631   copying build/lib/pele_platform/Examples/RNA/5C45_prep_proc.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2022-02-14T12:48:49,671   copying build/lib/pele_platform/Examples/RNA/2l94.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2022-02-14T12:48:49,676   copying build/lib/pele_platform/Examples/RNA/5C45_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2022-02-14T12:48:49,720   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit
2022-02-14T12:48:49,722   copying build/lib/pele_platform/Examples/exit/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit
2022-02-14T12:48:49,728   copying build/lib/pele_platform/Examples/exit/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit
2022-02-14T12:48:49,735   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/restart
2022-02-14T12:48:49,737   copying build/lib/pele_platform/Examples/restart/restart.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/restart
2022-02-14T12:48:49,743   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2022-02-14T12:48:49,745   copying build/lib/pele_platform/Examples/Msm/PR_AS4.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2022-02-14T12:48:49,783   copying build/lib/pele_platform/Examples/Msm/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2022-02-14T12:48:49,788   copying build/lib/pele_platform/Examples/Msm/PR_1A28_protein.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2022-02-14T12:48:49,826   copying build/lib/pele_platform/Examples/Msm/PR_1A28_xray_-_minimized_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2022-02-14T12:48:49,864   copying build/lib/pele_platform/Examples/Msm/AS4_INIT.mae -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2022-02-14T12:48:49,871   copying build/lib/pele_platform/Examples/Msm/PR_1A28_xray_-_minimized.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2022-02-14T12:48:49,909   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2022-02-14T12:48:49,912   copying build/lib/pele_platform/Examples/induced_fit/input_fast_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2022-02-14T12:48:49,917   copying build/lib/pele_platform/Examples/induced_fit/input_mae.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2022-02-14T12:48:49,923   copying build/lib/pele_platform/Examples/induced_fit/input_auto_clustering.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2022-02-14T12:48:49,928   copying build/lib/pele_platform/Examples/induced_fit/input_exhaustive.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2022-02-14T12:48:49,934   copying build/lib/pele_platform/Examples/induced_fit/input_exhaustive_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2022-02-14T12:48:49,939   copying build/lib/pele_platform/Examples/induced_fit/input_fast.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2022-02-14T12:48:49,946   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2022-02-14T12:48:49,948   copying build/lib/pele_platform/Examples/gpcr/complex_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2022-02-14T12:48:49,992   copying build/lib/pele_platform/Examples/gpcr/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2022-02-14T12:48:49,997   copying build/lib/pele_platform/Examples/gpcr/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2022-02-14T12:48:50,003   copying build/lib/pele_platform/Examples/gpcr/input_atom_error.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2022-02-14T12:48:50,008   copying build/lib/pele_platform/Examples/gpcr/input_defaults2.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2022-02-14T12:48:50,013   copying build/lib/pele_platform/Examples/gpcr/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2022-02-14T12:48:50,058   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc
2022-02-14T12:48:50,060   copying build/lib/pele_platform/Examples/clustering_xtc/water_clustering.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc
2022-02-14T12:48:50,068   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2022-02-14T12:48:50,070   copying build/lib/pele_platform/Examples/clustering_xtc/0/report_2 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2022-02-14T12:48:50,076   copying build/lib/pele_platform/Examples/clustering_xtc/0/trajectory_4.xtc -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2022-02-14T12:48:50,085   copying build/lib/pele_platform/Examples/clustering_xtc/0/topology.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2022-02-14T12:48:50,123   copying build/lib/pele_platform/Examples/clustering_xtc/0/trajectory_3.xtc -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2022-02-14T12:48:50,133   copying build/lib/pele_platform/Examples/clustering_xtc/0/report_4 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2022-02-14T12:48:50,138   copying build/lib/pele_platform/Examples/clustering_xtc/0/report_1 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2022-02-14T12:48:50,143   copying build/lib/pele_platform/Examples/clustering_xtc/0/trajectory_1.xtc -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2022-02-14T12:48:50,153   copying build/lib/pele_platform/Examples/clustering_xtc/0/report_3 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2022-02-14T12:48:50,158   copying build/lib/pele_platform/Examples/clustering_xtc/0/trajectory_2.xtc -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/clustering_xtc/0
2022-02-14T12:48:50,167   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
2022-02-14T12:48:50,170   copying build/lib/pele_platform/Examples/global/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
2022-02-14T12:48:50,176   copying build/lib/pele_platform/Examples/global/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
2022-02-14T12:48:50,181   copying build/lib/pele_platform/Examples/global/input_inputs_asterisc.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
2022-02-14T12:48:50,187   copying build/lib/pele_platform/Examples/global/input_inputs.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
2022-02-14T12:48:50,192   copying build/lib/pele_platform/Examples/test.sl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples
2022-02-14T12:48:50,199   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/box
2022-02-14T12:48:50,201   copying build/lib/pele_platform/Examples/box/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/box
2022-02-14T12:48:50,209   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/minimum_steps
2022-02-14T12:48:50,211   copying build/lib/pele_platform/Examples/minimum_steps/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/minimum_steps
2022-02-14T12:48:50,217   copying build/lib/pele_platform/Examples/minimum_steps/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/minimum_steps
2022-02-14T12:48:50,285   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2022-02-14T12:48:50,288   copying build/lib/pele_platform/Examples/constraints/no_connects.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2022-02-14T12:48:50,294   copying build/lib/pele_platform/Examples/constraints/input_tetrahedral.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2022-02-14T12:48:50,300   copying build/lib/pele_platform/Examples/constraints/fail_input_permissive_constraints.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2022-02-14T12:48:50,306   copying build/lib/pele_platform/Examples/constraints/input_constrain_smarts.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2022-02-14T12:48:50,312   copying build/lib/pele_platform/Examples/constraints/4w4o_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2022-02-14T12:48:50,346   copying build/lib/pele_platform/Examples/constraints/input_ca_ppp.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2022-02-14T12:48:50,351   copying build/lib/pele_platform/Examples/constraints/input_k.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2022-02-14T12:48:50,357   copying build/lib/pele_platform/Examples/constraints/input_all_metal_constraints.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2022-02-14T12:48:50,362   copying build/lib/pele_platform/Examples/constraints/4l3a_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2022-02-14T12:48:50,415   copying build/lib/pele_platform/Examples/constraints/input_no_metal_constraints.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2022-02-14T12:48:50,419   copying build/lib/pele_platform/Examples/constraints/ca_constraints.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2022-02-14T12:48:50,482   copying build/lib/pele_platform/Examples/constraints/input_ca_noppp.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2022-02-14T12:48:50,487   copying build/lib/pele_platform/Examples/constraints/input_metals.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2022-02-14T12:48:50,493   copying build/lib/pele_platform/Examples/constraints/input_smiles_error.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2022-02-14T12:48:50,498   copying build/lib/pele_platform/Examples/constraints/4w5i_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2022-02-14T12:48:50,532   copying build/lib/pele_platform/Examples/constraints/input_square_planar.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2022-02-14T12:48:50,538   copying build/lib/pele_platform/Examples/constraints/input_permissive_exception.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2022-02-14T12:48:50,543   copying build/lib/pele_platform/Examples/constraints/1zop.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2022-02-14T12:48:50,572   copying build/lib/pele_platform/Examples/constraints/input_ignore.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2022-02-14T12:48:50,577   copying build/lib/pele_platform/Examples/constraints/4qnr_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2022-02-14T12:48:50,630   copying build/lib/pele_platform/Examples/constraints/input_square_planar_polarisation.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2022-02-14T12:48:50,635   copying build/lib/pele_platform/Examples/constraints/input_external_constraints.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2022-02-14T12:48:50,640   copying build/lib/pele_platform/Examples/constraints/complex_smiles_error.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2022-02-14T12:48:50,682   copying build/lib/pele_platform/Examples/constraints/pass_input_permissive_constraints.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2022-02-14T12:48:50,687   copying build/lib/pele_platform/Examples/constraints/4zu9_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2022-02-14T12:48:50,800   copying build/lib/pele_platform/Examples/constraints/input_constrain_smiles.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2022-02-14T12:48:50,805   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions
2022-02-14T12:48:50,806   copying build/lib/pele_platform/Examples/interaction_restrictions/input_error_2.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions
2022-02-14T12:48:50,811   copying build/lib/pele_platform/Examples/interaction_restrictions/input_error.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions
2022-02-14T12:48:50,815   copying build/lib/pele_platform/Examples/interaction_restrictions/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions
2022-02-14T12:48:50,822   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions/out
2022-02-14T12:48:50,824   copying build/lib/pele_platform/Examples/interaction_restrictions/out/expected_metrics.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions/out
2022-02-14T12:48:50,830   copying build/lib/pele_platform/Examples/interaction_restrictions/out/expected_conditions.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions/out
2022-02-14T12:48:50,836   copying build/lib/pele_platform/Examples/interaction_restrictions/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/interaction_restrictions
2022-02-14T12:48:50,904   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2022-02-14T12:48:50,905   copying build/lib/pele_platform/Examples/PPI/1tnf_ligand.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2022-02-14T12:48:50,911   copying build/lib/pele_platform/Examples/PPI/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2022-02-14T12:48:50,915   copying build/lib/pele_platform/Examples/PPI/1f47_ligand.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2022-02-14T12:48:50,921   copying build/lib/pele_platform/Examples/PPI/input_skipref.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2022-02-14T12:48:50,926   copying build/lib/pele_platform/Examples/PPI/1f47_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2022-02-14T12:48:50,949   copying build/lib/pele_platform/Examples/PPI/input_folder.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2022-02-14T12:48:50,952   copying build/lib/pele_platform/Examples/PPI/1tnf_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2022-02-14T12:48:51,013   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/singularity
2022-02-14T12:48:51,015   copying build/lib/pele_platform/Examples/singularity/input_adaptive_mpi_params.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/singularity
2022-02-14T12:48:51,021   copying build/lib/pele_platform/Examples/singularity/input_adaptive.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/singularity
2022-02-14T12:48:51,026   copying build/lib/pele_platform/Examples/singularity/input_frag.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/singularity
2022-02-14T12:48:51,034   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2022-02-14T12:48:51,038   copying build/lib/pele_platform/Examples/preparation/6qmk_correct.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2022-02-14T12:48:51,086   copying build/lib/pele_platform/Examples/preparation/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2022-02-14T12:48:51,093   copying build/lib/pele_platform/Examples/preparation/complex_2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2022-02-14T12:48:51,155   copying build/lib/pele_platform/Examples/preparation/input_nonstandard.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2022-02-14T12:48:51,161   copying build/lib/pele_platform/Examples/preparation/6qmk_repeated.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2022-02-14T12:48:51,216   copying build/lib/pele_platform/Examples/preparation/parametrization_flags.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2022-02-14T12:48:51,223   copying build/lib/pele_platform/Examples/preparation/input_space.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2022-02-14T12:48:51,230   copying build/lib/pele_platform/Examples/preparation/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2022-02-14T12:48:51,271   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/flags
2022-02-14T12:48:51,273   copying build/lib/pele_platform/Examples/flags/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/flags
2022-02-14T12:48:51,280   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials
2022-02-14T12:48:51,284   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/induced_fit
2022-02-14T12:48:51,287   copying build/lib/pele_platform/Examples/tutorials/induced_fit/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/induced_fit
2022-02-14T12:48:51,293   copying build/lib/pele_platform/Examples/tutorials/induced_fit/docking.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/induced_fit
2022-02-14T12:48:51,360   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/gpcr
2022-02-14T12:48:51,362   copying build/lib/pele_platform/Examples/tutorials/gpcr/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/gpcr
2022-02-14T12:48:51,366   copying build/lib/pele_platform/Examples/tutorials/gpcr/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/gpcr
2022-02-14T12:48:51,408   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/ppi
2022-02-14T12:48:51,411   copying build/lib/pele_platform/Examples/tutorials/ppi/4yy6_ligand.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/ppi
2022-02-14T12:48:51,418   copying build/lib/pele_platform/Examples/tutorials/ppi/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/ppi
2022-02-14T12:48:51,423   copying build/lib/pele_platform/Examples/tutorials/ppi/4yy6_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/ppi
2022-02-14T12:48:51,449   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/randomize
2022-02-14T12:48:51,451   copying build/lib/pele_platform/Examples/randomize/ref_ligand.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/randomize
2022-02-14T12:48:51,457   copying build/lib/pele_platform/Examples/randomize/ligand2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/randomize
2022-02-14T12:48:51,463   copying build/lib/pele_platform/Examples/randomize/ligand1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/randomize
2022-02-14T12:48:51,469   copying build/lib/pele_platform/Examples/randomize/receptor.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/randomize
2022-02-14T12:48:51,513   copying build/lib/pele_platform/Examples/randomize/ligand3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/randomize
2022-02-14T12:48:51,522   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2022-02-14T12:48:51,524   copying build/lib/pele_platform/Examples/frag/input_point_analysis.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2022-02-14T12:48:51,530   copying build/lib/pele_platform/Examples/frag/input_core_bond.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2022-02-14T12:48:51,534   copying build/lib/pele_platform/Examples/frag/1dyi_waters.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2022-02-14T12:48:51,561   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/checker
2022-02-14T12:48:51,563   copying build/lib/pele_platform/Examples/frag/checker/4RFM_series.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/checker
2022-02-14T12:48:51,570   copying build/lib/pele_platform/Examples/frag/checker/receptor.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/checker
2022-02-14T12:48:51,600   copying build/lib/pele_platform/Examples/frag/checker/4RFM_proc.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/checker
2022-02-14T12:48:51,604   copying build/lib/pele_platform/Examples/frag/ligands.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2022-02-14T12:48:51,608   copying build/lib/pele_platform/Examples/frag/input_sim.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2022-02-14T12:48:51,614   copying build/lib/pele_platform/Examples/frag/1w7h_preparation_structure_2w_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2022-02-14T12:48:51,665   copying build/lib/pele_platform/Examples/frag/input_fragment_atom.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2022-02-14T12:48:51,671   copying build/lib/pele_platform/Examples/frag/input_ai.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2022-02-14T12:48:51,676   copying build/lib/pele_platform/Examples/frag/input_frag_waters.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2022-02-14T12:48:51,681   copying build/lib/pele_platform/Examples/frag/input_core.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2022-02-14T12:48:51,687   copying build/lib/pele_platform/Examples/frag/1dyi_no_waters.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2022-02-14T12:48:51,712   copying build/lib/pele_platform/Examples/frag/flags.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2022-02-14T12:48:51,719   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/pdb_test_lib
2022-02-14T12:48:51,723   copying build/lib/pele_platform/Examples/frag/pdb_test_lib/mol1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/pdb_test_lib
2022-02-14T12:48:51,731   copying build/lib/pele_platform/Examples/frag/pdb_test_lib/mol2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/pdb_test_lib
2022-02-14T12:48:51,738   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:51,741   copying build/lib/pele_platform/Examples/frag/sdf_joiner/4RFM_core_sc.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:51,790   copying build/lib/pele_platform/Examples/frag/sdf_joiner/4RFM_series.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:51,800   copying build/lib/pele_platform/Examples/frag/sdf_joiner/glide-dockSARS_core.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:51,880   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag2.yml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:51,887   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:51,896   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag3.yml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:51,901   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag4.yml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:51,905   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag3.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:51,915   copying build/lib/pele_platform/Examples/frag/sdf_joiner/13_serie.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:51,929   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag31.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:51,940   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag.yml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:51,945   copying build/lib/pele_platform/Examples/frag/sdf_joiner/core2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:51,982   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag5.yml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:51,986   copying build/lib/pele_platform/Examples/frag/sdf_joiner/4RFM_proc.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:52,034   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag2.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:52,044   copying build/lib/pele_platform/Examples/frag/sdf_joiner/core3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2022-02-14T12:48:52,062   copying build/lib/pele_platform/Examples/frag/1w7h_preparation_structure_2w.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2022-02-14T12:48:52,114   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_test_lib
2022-02-14T12:48:52,117   copying build/lib/pele_platform/Examples/frag/sdf_test_lib/test_library.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_test_lib
2022-02-14T12:48:52,121   copying build/lib/pele_platform/Examples/frag/input_core_sdf.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2022-02-14T12:48:52,125   copying build/lib/pele_platform/Examples/frag/ligands_water.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2022-02-14T12:48:52,131   copying build/lib/pele_platform/Examples/frag/input_flags.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2022-02-14T12:48:52,136   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data
2022-02-14T12:48:52,140   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1
2022-02-14T12:48:52,144   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result
2022-02-14T12:48:52,147   copying build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result/epochsampling_result_trajectory_1.1_BindingEnergy-23.4636.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result
2022-02-14T12:48:52,198   copying build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result/epochsampling_result_trajectory_2.1_BindingEnergy-25.1634.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/top_result
2022-02-14T12:48:52,250   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2022-02-14T12:48:52,253   copying build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result/report_2 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2022-02-14T12:48:52,259   copying build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result/trajectory_2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2022-02-14T12:48:52,348   copying build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result/report_1 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2022-02-14T12:48:52,352   copying build/lib/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result/trajectory_1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/analysis_data/1w7h_preparation_structure_2w_processed_frag_mol1C3-H2C1-H1/sampling_result
2022-02-14T12:48:52,442   copying build/lib/pele_platform/Examples/frag/input_symmetry.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2022-02-14T12:48:52,447   copying build/lib/pele_platform/Examples/frag/analysis.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2022-02-14T12:48:52,453   copying build/lib/pele_platform/Examples/frag/amino.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2022-02-14T12:48:52,458   copying build/lib/pele_platform/Examples/frag/core.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2022-02-14T12:48:52,463   copying build/lib/pele_platform/Examples/frag/input_lib_pdb.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2022-02-14T12:48:52,467   copying build/lib/pele_platform/Examples/frag/input_sim_xtc.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2022-02-14T12:48:52,471   copying build/lib/pele_platform/Examples/frag/sequential.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2022-02-14T12:48:52,475   copying build/lib/pele_platform/Examples/frag/input_lib_sdf.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2022-02-14T12:48:52,479   copying build/lib/pele_platform/converter.py -> build/bdist.linux-armv7l/wheel/pele_platform
2022-02-14T12:48:52,488   creating build/bdist.linux-armv7l/wheel/pele_platform/features
2022-02-14T12:48:52,491   copying build/lib/pele_platform/features/adaptive.py -> build/bdist.linux-armv7l/wheel/pele_platform/features
2022-02-14T12:48:52,498   copying build/lib/pele_platform/features/frag.py -> build/bdist.linux-armv7l/wheel/pele_platform/features
2022-02-14T12:48:52,503   copying build/lib/pele_platform/features/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/features
2022-02-14T12:48:52,509   creating build/bdist.linux-armv7l/wheel/pele_platform/Templates
2022-02-14T12:48:52,512   copying build/lib/pele_platform/Templates/pele_template.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Templates
2022-02-14T12:48:52,518   copying build/lib/pele_platform/Templates/solventParamsHCTOBC.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Templates
2022-02-14T12:48:52,529   copying build/lib/pele_platform/Templates/template_adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Templates
2022-02-14T12:48:52,534   creating build/bdist.linux-armv7l/wheel/pele_platform/covalent_docking
2022-02-14T12:48:52,536   copying build/lib/pele_platform/covalent_docking/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/covalent_docking
2022-02-14T12:48:52,541   copying build/lib/pele_platform/covalent_docking/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/covalent_docking
2022-02-14T12:48:52,547   creating build/bdist.linux-armv7l/wheel/pele_platform/Checker
2022-02-14T12:48:52,549   copying build/lib/pele_platform/Checker/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2022-02-14T12:48:52,556   copying build/lib/pele_platform/Checker/environment_variables.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2022-02-14T12:48:52,561   copying build/lib/pele_platform/Checker/executable.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2022-02-14T12:48:52,566   copying build/lib/pele_platform/Checker/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2022-02-14T12:48:52,569   copying build/lib/pele_platform/Checker/valid_flags.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2022-02-14T12:48:52,574   copying build/lib/pele_platform/Checker/pdb_checker.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2022-02-14T12:48:52,579   copying build/lib/pele_platform/Checker/python_version.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2022-02-14T12:48:52,583   copying build/lib/pele_platform/pathway_extractor.py -> build/bdist.linux-armv7l/wheel/pele_platform
2022-02-14T12:48:52,591   creating build/bdist.linux-armv7l/wheel/pele_platform/Frag
2022-02-14T12:48:52,593   copying build/lib/pele_platform/Frag/checker.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2022-02-14T12:48:52,599   copying build/lib/pele_platform/Frag/fragments.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2022-02-14T12:48:52,605   copying build/lib/pele_platform/Frag/libraries.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2022-02-14T12:48:52,610   copying build/lib/pele_platform/Frag/atoms.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2022-02-14T12:48:52,614   copying build/lib/pele_platform/Frag/generative_model.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2022-02-14T12:48:52,619   creating build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2022-02-14T12:48:52,621   copying build/lib/pele_platform/Frag/parameters/files.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2022-02-14T12:48:52,626   copying build/lib/pele_platform/Frag/parameters/metrics.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2022-02-14T12:48:52,631   copying build/lib/pele_platform/Frag/parameters/water.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2022-02-14T12:48:52,637   copying build/lib/pele_platform/Frag/parameters/optional.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2022-02-14T12:48:52,643   copying build/lib/pele_platform/Frag/parameters/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2022-02-14T12:48:52,648   copying build/lib/pele_platform/Frag/parameters/simulation.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2022-02-14T12:48:52,653   copying build/lib/pele_platform/Frag/helpers.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2022-02-14T12:48:52,658   copying build/lib/pele_platform/Frag/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2022-02-14T12:48:52,661   copying build/lib/pele_platform/Frag/analysis.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2022-02-14T12:48:52,666   copying build/lib/pele_platform/Frag/simulation.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2022-02-14T12:48:52,674   creating build/bdist.linux-armv7l/wheel/pele_platform/out_in
2022-02-14T12:48:52,676   copying build/lib/pele_platform/out_in/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/out_in
2022-02-14T12:48:52,682   copying build/lib/pele_platform/out_in/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/out_in
2022-02-14T12:48:52,689   creating build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2022-02-14T12:48:52,691   copying build/lib/pele_platform/Adaptive/pca.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2022-02-14T12:48:52,697   copying build/lib/pele_platform/Adaptive/interaction_restrictions.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2022-02-14T12:48:52,703   copying build/lib/pele_platform/Adaptive/plop_ligand_parametrization.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2022-02-14T12:48:52,709   copying build/lib/pele_platform/Adaptive/preequilibrator.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2022-02-14T12:48:52,715   copying build/lib/pele_platform/Adaptive/metrics.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2022-02-14T12:48:52,720   copying build/lib/pele_platform/Adaptive/box.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2022-02-14T12:48:52,726   copying build/lib/pele_platform/Adaptive/plop_solvent.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2022-02-14T12:48:52,731   copying build/lib/pele_platform/Adaptive/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2022-02-14T12:48:52,736   copying build/lib/pele_platform/Adaptive/parametrizer.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2022-02-14T12:48:52,746   copying build/lib/pele_platform/Adaptive/simulation.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2022-02-14T12:48:52,754   creating build/bdist.linux-armv7l/wheel/pele_platform/constants
2022-02-14T12:48:52,756   copying build/lib/pele_platform/constants/pele_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/constants
2022-02-14T12:48:52,761   copying build/lib/pele_platform/constants/constants.py -> build/bdist.linux-armv7l/wheel/pele_platform/constants
2022-02-14T12:48:52,767   copying build/lib/pele_platform/constants/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/constants
2022-02-14T12:48:52,773   creating build/bdist.linux-armv7l/wheel/pele_platform/enzyme_engineering
2022-02-14T12:48:52,775   copying build/lib/pele_platform/enzyme_engineering/saturated_mutagenesis.py -> build/bdist.linux-armv7l/wheel/pele_platform/enzyme_engineering
2022-02-14T12:48:52,782   copying build/lib/pele_platform/enzyme_engineering/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/enzyme_engineering
2022-02-14T12:48:52,788   creating build/bdist.linux-armv7l/wheel/pele_platform/RNA
2022-02-14T12:48:52,790   copying build/lib/pele_platform/RNA/prep.py -> build/bdist.linux-armv7l/wheel/pele_platform/RNA
2022-02-14T12:48:52,795   copying build/lib/pele_platform/RNA/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/RNA
2022-02-14T12:48:52,799   copying build/lib/pele_platform/main.py -> build/bdist.linux-armv7l/wheel/pele_platform
2022-02-14T12:48:52,803   copying build/lib/pele_platform/_version.py -> build/bdist.linux-armv7l/wheel/pele_platform
2022-02-14T12:48:52,808   creating build/bdist.linux-armv7l/wheel/pele_platform/gpcr
2022-02-14T12:48:52,810   copying build/lib/pele_platform/gpcr/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/gpcr
2022-02-14T12:48:52,815   copying build/lib/pele_platform/gpcr/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/gpcr
2022-02-14T12:48:52,821   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities
2022-02-14T12:48:52,826   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2022-02-14T12:48:52,829   copying build/lib/pele_platform/Utilities/Helpers/map_atoms.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2022-02-14T12:48:52,835   copying build/lib/pele_platform/Utilities/Helpers/template_builder.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2022-02-14T12:48:52,838   copying build/lib/pele_platform/Utilities/Helpers/yaml_parser.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2022-02-14T12:48:52,845   copying build/lib/pele_platform/Utilities/Helpers/bestStructs.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2022-02-14T12:48:52,849   copying build/lib/pele_platform/Utilities/Helpers/protein_wizard.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2022-02-14T12:48:52,856   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/Metals
2022-02-14T12:48:52,859   copying build/lib/pele_platform/Utilities/Helpers/Metals/metal_polarisation.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/Metals
2022-02-14T12:48:52,865   copying build/lib/pele_platform/Utilities/Helpers/Metals/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/Metals
2022-02-14T12:48:52,869   copying build/lib/pele_platform/Utilities/Helpers/Metals/metal_constraints.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/Metals
2022-02-14T12:48:52,875   copying build/lib/pele_platform/Utilities/Helpers/randomize.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2022-02-14T12:48:52,880   copying build/lib/pele_platform/Utilities/Helpers/plop_launcher.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2022-02-14T12:48:52,885   copying build/lib/pele_platform/Utilities/Helpers/launcher.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2022-02-14T12:48:52,889   copying build/lib/pele_platform/Utilities/Helpers/conda_deployment.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2022-02-14T12:48:52,893   copying build/lib/pele_platform/Utilities/Helpers/system_prep.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2022-02-14T12:48:52,900   copying build/lib/pele_platform/Utilities/Helpers/center_of_mass.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2022-02-14T12:48:52,905   copying build/lib/pele_platform/Utilities/Helpers/interaction_constraints.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2022-02-14T12:48:52,911   copying build/lib/pele_platform/Utilities/Helpers/helpers.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2022-02-14T12:48:52,917   copying build/lib/pele_platform/Utilities/Helpers/water.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2022-02-14T12:48:52,923   copying build/lib/pele_platform/Utilities/Helpers/solventOBCParamsGenerator.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2022-02-14T12:48:52,928   copying build/lib/pele_platform/Utilities/Helpers/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2022-02-14T12:48:52,932   copying build/lib/pele_platform/Utilities/Helpers/ligand_conformations.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2022-02-14T12:48:52,939   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/constraints
2022-02-14T12:48:52,942   copying build/lib/pele_platform/Utilities/Helpers/constraints/smiles_constraints.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/constraints
2022-02-14T12:48:52,948   copying build/lib/pele_platform/Utilities/Helpers/constraints/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/constraints
2022-02-14T12:48:52,953   copying build/lib/pele_platform/Utilities/Helpers/constraints/alpha_constraints.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/constraints
2022-02-14T12:48:52,958   copying build/lib/pele_platform/Utilities/Helpers/calculatePCA4PELE.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2022-02-14T12:48:52,965   copying build/lib/pele_platform/Utilities/Helpers/simulation.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2022-02-14T12:48:52,969   copying build/lib/pele_platform/Utilities/Helpers/missing_residues.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2022-02-14T12:48:52,976   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters
2022-02-14T12:48:52,980   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationFolders
2022-02-14T12:48:52,983   copying build/lib/pele_platform/Utilities/Parameters/SimulationFolders/simulation_folders.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationFolders
2022-02-14T12:48:52,989   copying build/lib/pele_platform/Utilities/Parameters/SimulationFolders/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationFolders
2022-02-14T12:48:52,993   copying build/lib/pele_platform/Utilities/Parameters/parameters.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters
2022-02-14T12:48:52,1000   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams
2022-02-14T12:48:53,003   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/site_finder
2022-02-14T12:48:53,005   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/site_finder/site_finder.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/site_finder
2022-02-14T12:48:53,009   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/site_finder/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/site_finder
2022-02-14T12:48:53,012   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/simulation_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams
2022-02-14T12:48:53,022   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2022-02-14T12:48:53,025   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams/inout_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2022-02-14T12:48:53,030   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2022-02-14T12:48:53,036   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PCA
2022-02-14T12:48:53,038   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA/pca.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PCA
2022-02-14T12:48:53,042   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PCA
2022-02-14T12:48:53,046   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2022-02-14T12:48:53,048   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams/msm_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2022-02-14T12:48:53,052   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2022-02-14T12:48:53,058   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2022-02-14T12:48:53,061   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams/bias_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2022-02-14T12:48:53,066   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2022-02-14T12:48:53,071   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams
2022-02-14T12:48:53,076   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2022-02-14T12:48:53,078   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2022-02-14T12:48:53,082   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams/glide_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2022-02-14T12:48:53,087   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PPI
2022-02-14T12:48:53,088   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI/ppi.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PPI
2022-02-14T12:48:53,093   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PPI
2022-02-14T12:48:53,096   copying build/lib/pele_platform/Utilities/Parameters/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters
2022-02-14T12:48:53,101   copying build/lib/pele_platform/Utilities/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities
2022-02-14T12:48:53,107   copying build/lib/pele_platform/plotter.py -> build/bdist.linux-armv7l/wheel/pele_platform
2022-02-14T12:48:53,119   copying build/lib/pele_platform/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform
2022-02-14T12:48:53,123   creating build/bdist.linux-armv7l/wheel/pele_platform/PPI
2022-02-14T12:48:53,125   copying build/lib/pele_platform/PPI/cluster.py -> build/bdist.linux-armv7l/wheel/pele_platform/PPI
2022-02-14T12:48:53,130   copying build/lib/pele_platform/PPI/simulation_launcher.py -> build/bdist.linux-armv7l/wheel/pele_platform/PPI
2022-02-14T12:48:53,134   copying build/lib/pele_platform/PPI/preparation.py -> build/bdist.linux-armv7l/wheel/pele_platform/PPI
2022-02-14T12:48:53,138   copying build/lib/pele_platform/PPI/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/PPI
2022-02-14T12:48:53,145   copying build/lib/pele_platform/PPI/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/PPI
2022-02-14T12:48:53,150   creating build/bdist.linux-armv7l/wheel/pele_platform/Errors
2022-02-14T12:48:53,153   copying build/lib/pele_platform/Errors/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Errors
2022-02-14T12:48:53,158   copying build/lib/pele_platform/Errors/custom_errors.py -> build/bdist.linux-armv7l/wheel/pele_platform/Errors
2022-02-14T12:48:53,161   running install_egg_info
2022-02-14T12:48:53,179   Copying pele_platform.egg-info to build/bdist.linux-armv7l/wheel/pele_platform-1.6.3-py3.5.egg-info
2022-02-14T12:48:53,208   running install_scripts
2022-02-14T12:48:53,455   creating build/bdist.linux-armv7l/wheel/pele_platform-1.6.3.dist-info/WHEEL
2022-02-14T12:49:12,023   Building wheel for pele-platform (setup.py): finished with status 'done'
2022-02-14T12:49:12,236   Created wheel for pele-platform: filename=pele_platform-1.6.3-py3-none-any.whl size=12616672 sha256=47316e9af8f8057589bae4d021414415110bc243274dce4b363cb55b156cd794
2022-02-14T12:49:12,237   Stored in directory: /tmp/pip-ephem-wheel-cache-68yilfrs/wheels/cc/d2/ee/097fbb25662174ca8ce97ea3c771a17593a5387baa68e81973
2022-02-14T12:49:12,306 Successfully built pele-platform
2022-02-14T12:49:14,489 Removed build tracker: '/tmp/pip-req-tracker-n7g_nuds'