2022-02-16T10:30:30,082 Created temporary directory: /tmp/pip-ephem-wheel-cache-lnpj28gf
2022-02-16T10:30:30,088 Created temporary directory: /tmp/pip-req-tracker-olq_axu5
2022-02-16T10:30:30,089 Initialized build tracking at /tmp/pip-req-tracker-olq_axu5
2022-02-16T10:30:30,089 Created build tracker: /tmp/pip-req-tracker-olq_axu5
2022-02-16T10:30:30,090 Entered build tracker: /tmp/pip-req-tracker-olq_axu5
2022-02-16T10:30:30,091 Created temporary directory: /tmp/pip-wheel-ce5sgjf4
2022-02-16T10:30:30,164 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-02-16T10:30:30,172 2 location(s) to search for versions of capice:
2022-02-16T10:30:30,172 * https://pypi.org/simple/capice/
2022-02-16T10:30:30,172 * https://www.piwheels.org/simple/capice/
2022-02-16T10:30:30,173 Fetching project page and analyzing links: https://pypi.org/simple/capice/
2022-02-16T10:30:30,174 Getting page https://pypi.org/simple/capice/
2022-02-16T10:30:30,177 Found index url https://pypi.org/simple
2022-02-16T10:30:30,295   Found link https://files.pythonhosted.org/packages/2b/cf/eeb11d53ea46d9463d108113249f8a5b8c3023b3822835fd2579c3351924/capice-3.0.0rc0.tar.gz#sha256=580f1298bafd091d86b5ded841588032f72e40035de04a7ec5fc1516c9edc2b2 (from https://pypi.org/simple/capice/) (requires-python:>=3.7), version: 3.0.0rc0
2022-02-16T10:30:30,296   Found link https://files.pythonhosted.org/packages/c9/09/fdf73572fc6b25f60b4a5b2729454b1560abff6dd9f7907f45d86bd0ec88/capice-3.0.0rc1.tar.gz#sha256=b5eb8501028078b58b078728cb5927d30f736dec35d8d17784807fb18bece558 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc1
2022-02-16T10:30:30,298   Found link https://files.pythonhosted.org/packages/93/94/a86e20a50a6ae585d21896e5348b2ee157c3a7f49a22e53a014884d069d1/capice-3.0.0rc2.tar.gz#sha256=fd1c7a04ef0b10576b9843cecc7a188c20ae39edb4ed4a8fec27c8abc13d23f4 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc2
2022-02-16T10:30:30,299   Found link https://files.pythonhosted.org/packages/09/dc/8e44c3e88c1ee6402c17fb3c06b4e56d7580e55dd384f3c6f5c0c9f539ef/capice-3.0.0rc3.tar.gz#sha256=331d26cc87603dd46c81b0d670c6c27566c204ef5f68a150de9dced4d4d46018 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc3
2022-02-16T10:30:30,300   Found link https://files.pythonhosted.org/packages/d4/f2/05c3cdda4c711aaddea306235e5b860009d706ba41652ce147ab893aded6/capice-3.0.0rc4.tar.gz#sha256=367c328ad9259ebe6610ea4e335d073cad41187bef8d7461ee2c936f9f66de26 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc4
2022-02-16T10:30:30,301 Fetching project page and analyzing links: https://www.piwheels.org/simple/capice/
2022-02-16T10:30:30,302 Getting page https://www.piwheels.org/simple/capice/
2022-02-16T10:30:30,304 Found index url https://www.piwheels.org/simple
2022-02-16T10:30:30,525   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc0-py3-none-any.whl#sha256=db7e870e65a264aa8b90e67c7ad2b62ed2662d850fac021fe20eafa759ccd21a (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.7)
2022-02-16T10:30:30,526   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc1-py3-none-any.whl#sha256=1f1a3830a436ef9f9f34370a93dea81e04b8e4761fd8ecae8ce10955c1dddac2 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-02-16T10:30:30,526   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc2-py3-none-any.whl#sha256=f67afcd30fc1b242beb1b3631528be28745036179d8f8ff75fdd07d13c163206 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-02-16T10:30:30,527   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc3-py3-none-any.whl#sha256=4ee7f781a7a6edacfb38af661fab250bdb707a6f63b57c56612ff132ceb55c74 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-02-16T10:30:30,527 Skipping link: not a file: https://www.piwheels.org/simple/capice/
2022-02-16T10:30:30,528 Skipping link: not a file: https://pypi.org/simple/capice/
2022-02-16T10:30:30,573 Given no hashes to check 1 links for project 'capice': discarding no candidates
2022-02-16T10:30:30,614 Collecting capice==3.0.0rc4
2022-02-16T10:30:30,618   Created temporary directory: /tmp/pip-unpack-elnruu5r
2022-02-16T10:30:30,864   Downloading capice-3.0.0rc4.tar.gz (31 kB)
2022-02-16T10:30:31,114   Added capice==3.0.0rc4 from https://files.pythonhosted.org/packages/d4/f2/05c3cdda4c711aaddea306235e5b860009d706ba41652ce147ab893aded6/capice-3.0.0rc4.tar.gz#sha256=367c328ad9259ebe6610ea4e335d073cad41187bef8d7461ee2c936f9f66de26 to build tracker '/tmp/pip-req-tracker-olq_axu5'
2022-02-16T10:30:31,116   Running setup.py (path:/tmp/pip-wheel-ce5sgjf4/capice_aab8c99f4a5c46df8decd0613659be50/setup.py) egg_info for package capice
2022-02-16T10:30:31,117   Created temporary directory: /tmp/pip-pip-egg-info-496bf_21
2022-02-16T10:30:31,118   Preparing metadata (setup.py): started
2022-02-16T10:30:31,120   Running command python setup.py egg_info
2022-02-16T10:30:33,045   running egg_info
2022-02-16T10:30:33,049   creating /tmp/pip-pip-egg-info-496bf_21/capice.egg-info
2022-02-16T10:30:33,064   writing manifest file '/tmp/pip-pip-egg-info-496bf_21/capice.egg-info/SOURCES.txt'
2022-02-16T10:30:33,077   package init file 'src/molgenis/__init__.py' not found (or not a regular file)
2022-02-16T10:30:33,104   writing manifest file '/tmp/pip-pip-egg-info-496bf_21/capice.egg-info/SOURCES.txt'
2022-02-16T10:30:33,224   Preparing metadata (setup.py): finished with status 'done'
2022-02-16T10:30:33,236   Source in /tmp/pip-wheel-ce5sgjf4/capice_aab8c99f4a5c46df8decd0613659be50 has version 3.0.0rc4, which satisfies requirement capice==3.0.0rc4 from https://files.pythonhosted.org/packages/d4/f2/05c3cdda4c711aaddea306235e5b860009d706ba41652ce147ab893aded6/capice-3.0.0rc4.tar.gz#sha256=367c328ad9259ebe6610ea4e335d073cad41187bef8d7461ee2c936f9f66de26
2022-02-16T10:30:33,238   Removed capice==3.0.0rc4 from https://files.pythonhosted.org/packages/d4/f2/05c3cdda4c711aaddea306235e5b860009d706ba41652ce147ab893aded6/capice-3.0.0rc4.tar.gz#sha256=367c328ad9259ebe6610ea4e335d073cad41187bef8d7461ee2c936f9f66de26 from build tracker '/tmp/pip-req-tracker-olq_axu5'
2022-02-16T10:30:33,253 Created temporary directory: /tmp/pip-unpack-j3rsgydx
2022-02-16T10:30:33,254 Building wheels for collected packages: capice
2022-02-16T10:30:33,263   Created temporary directory: /tmp/pip-wheel-7s_4qey5
2022-02-16T10:30:33,264   Building wheel for capice (setup.py): started
2022-02-16T10:30:33,266   Destination directory: /tmp/pip-wheel-7s_4qey5
2022-02-16T10:30:33,266   Running command python setup.py bdist_wheel
2022-02-16T10:30:35,169   running bdist_wheel
2022-02-16T10:30:35,561   running build
2022-02-16T10:30:35,561   running build_py
2022-02-16T10:30:35,566   package init file 'src/molgenis/__init__.py' not found (or not a regular file)
2022-02-16T10:30:35,571   creating build
2022-02-16T10:30:35,571   creating build/lib
2022-02-16T10:30:35,573   creating build/lib/molgenis
2022-02-16T10:30:35,574   creating build/lib/molgenis/capice
2022-02-16T10:30:35,576   copying src/molgenis/capice/main_train.py -> build/lib/molgenis/capice
2022-02-16T10:30:35,581   copying src/molgenis/capice/__version__.py -> build/lib/molgenis/capice
2022-02-16T10:30:35,584   copying src/molgenis/capice/main_capice.py -> build/lib/molgenis/capice
2022-02-16T10:30:35,587   copying src/molgenis/capice/__init__.py -> build/lib/molgenis/capice
2022-02-16T10:30:35,590   copying src/molgenis/capice/capice.py -> build/lib/molgenis/capice
2022-02-16T10:30:35,594   copying src/molgenis/capice/main_predict.py -> build/lib/molgenis/capice
2022-02-16T10:30:35,599   creating build/lib/molgenis/capice/vep
2022-02-16T10:30:35,601   copying src/molgenis/capice/vep/poly_phen.py -> build/lib/molgenis/capice/vep
2022-02-16T10:30:35,605   copying src/molgenis/capice/vep/template_sift_polyphen.py -> build/lib/molgenis/capice/vep
2022-02-16T10:30:35,608   copying src/molgenis/capice/vep/seq.py -> build/lib/molgenis/capice/vep
2022-02-16T10:30:35,612   copying src/molgenis/capice/vep/amino_acids.py -> build/lib/molgenis/capice/vep
2022-02-16T10:30:35,615   copying src/molgenis/capice/vep/cdna_position.py -> build/lib/molgenis/capice/vep
2022-02-16T10:30:35,618   copying src/molgenis/capice/vep/template_position.py -> build/lib/molgenis/capice/vep
2022-02-16T10:30:35,621   copying src/molgenis/capice/vep/__init__.py -> build/lib/molgenis/capice/vep
2022-02-16T10:30:35,624   copying src/molgenis/capice/vep/length.py -> build/lib/molgenis/capice/vep
2022-02-16T10:30:35,628   copying src/molgenis/capice/vep/cds_position.py -> build/lib/molgenis/capice/vep
2022-02-16T10:30:35,631   copying src/molgenis/capice/vep/sift.py -> build/lib/molgenis/capice/vep
2022-02-16T10:30:35,634   copying src/molgenis/capice/vep/type.py -> build/lib/molgenis/capice/vep
2022-02-16T10:30:35,638   copying src/molgenis/capice/vep/consequence.py -> build/lib/molgenis/capice/vep
2022-02-16T10:30:35,641   copying src/molgenis/capice/vep/template.py -> build/lib/molgenis/capice/vep
2022-02-16T10:30:35,645   copying src/molgenis/capice/vep/protein_position.py -> build/lib/molgenis/capice/vep
2022-02-16T10:30:35,650   creating build/lib/molgenis/capice/utilities
2022-02-16T10:30:35,651   copying src/molgenis/capice/utilities/enums.py -> build/lib/molgenis/capice/utilities
2022-02-16T10:30:35,655   copying src/molgenis/capice/utilities/capice_imputing.py -> build/lib/molgenis/capice/utilities
2022-02-16T10:30:35,658   copying src/molgenis/capice/utilities/load_file_postprocessor.py -> build/lib/molgenis/capice/utilities
2022-02-16T10:30:35,662   copying src/molgenis/capice/utilities/manual_vep_processor.py -> build/lib/molgenis/capice/utilities
2022-02-16T10:30:35,665   copying src/molgenis/capice/utilities/__init__.py -> build/lib/molgenis/capice/utilities
2022-02-16T10:30:35,668   copying src/molgenis/capice/utilities/input_parser.py -> build/lib/molgenis/capice/utilities
2022-02-16T10:30:35,672   copying src/molgenis/capice/utilities/preprocessor.py -> build/lib/molgenis/capice/utilities
2022-02-16T10:30:35,676   copying src/molgenis/capice/utilities/input_processor.py -> build/lib/molgenis/capice/utilities
2022-02-16T10:30:35,679   copying src/molgenis/capice/utilities/class_suggestor.py -> build/lib/molgenis/capice/utilities
2022-02-16T10:30:35,682   copying src/molgenis/capice/utilities/dynamic_loader.py -> build/lib/molgenis/capice/utilities
2022-02-16T10:30:35,686   copying src/molgenis/capice/utilities/custom_logging_filter.py -> build/lib/molgenis/capice/utilities
2022-02-16T10:30:35,689   copying src/molgenis/capice/utilities/predictor.py -> build/lib/molgenis/capice/utilities
2022-02-16T10:30:35,694   creating build/lib/molgenis/capice/validators
2022-02-16T10:30:35,695   copying src/molgenis/capice/validators/post_file_parse_validator.py -> build/lib/molgenis/capice/validators
2022-02-16T10:30:35,698   copying src/molgenis/capice/validators/__init__.py -> build/lib/molgenis/capice/validators
2022-02-16T10:30:35,701   copying src/molgenis/capice/validators/property_type_validator.py -> build/lib/molgenis/capice/validators
2022-02-16T10:30:35,704   copying src/molgenis/capice/validators/input_validator.py -> build/lib/molgenis/capice/validators
2022-02-16T10:30:35,708   copying src/molgenis/capice/validators/post_vep_processing_validator.py -> build/lib/molgenis/capice/validators
2022-02-16T10:30:35,713   creating build/lib/molgenis/capice/cli
2022-02-16T10:30:35,714   copying src/molgenis/capice/cli/args_handler_train.py -> build/lib/molgenis/capice/cli
2022-02-16T10:30:35,717   copying src/molgenis/capice/cli/__init__.py -> build/lib/molgenis/capice/cli
2022-02-16T10:30:35,720   copying src/molgenis/capice/cli/args_handler_predict.py -> build/lib/molgenis/capice/cli
2022-02-16T10:30:35,724   copying src/molgenis/capice/cli/args_handler_parent.py -> build/lib/molgenis/capice/cli
2022-02-16T10:30:35,728   creating build/lib/molgenis/capice/core
2022-02-16T10:30:35,730   copying src/molgenis/capice/core/logger.py -> build/lib/molgenis/capice/core
2022-02-16T10:30:35,734   copying src/molgenis/capice/core/capice_manager.py -> build/lib/molgenis/capice/core
2022-02-16T10:30:35,737   copying src/molgenis/capice/core/__init__.py -> build/lib/molgenis/capice/core
2022-02-16T10:30:35,740   copying src/molgenis/capice/core/args_handler.py -> build/lib/molgenis/capice/core
2022-02-16T10:30:35,744   copying src/molgenis/capice/core/capice_exporter.py -> build/lib/molgenis/capice/core
2022-02-16T10:30:35,771   /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-02-16T10:30:35,772     warnings.warn(
2022-02-16T10:30:35,776   running install
2022-02-16T10:30:35,839   running install_lib
2022-02-16T10:30:35,846   creating build/bdist.linux-armv7l
2022-02-16T10:30:35,847   creating build/bdist.linux-armv7l/wheel
2022-02-16T10:30:35,850   creating build/bdist.linux-armv7l/wheel/molgenis
2022-02-16T10:30:35,853   creating build/bdist.linux-armv7l/wheel/molgenis/capice
2022-02-16T10:30:35,860   creating build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-02-16T10:30:35,906   creating build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-02-16T10:30:35,950   creating build/bdist.linux-armv7l/wheel/molgenis/capice/validators
2022-02-16T10:30:35,974   creating build/bdist.linux-armv7l/wheel/molgenis/capice/cli
2022-02-16T10:30:35,994   creating build/bdist.linux-armv7l/wheel/molgenis/capice/core
2022-02-16T10:30:36,013   running install_egg_info
2022-02-16T10:30:36,056   running egg_info
2022-02-16T10:30:36,107   writing manifest file 'src/capice.egg-info/SOURCES.txt'
2022-02-16T10:30:36,109   Copying src/capice.egg-info to build/bdist.linux-armv7l/wheel/capice-3.0.0rc4-py3.9.egg-info
2022-02-16T10:30:36,132   running install_scripts
2022-02-16T10:30:36,647   Building wheel for capice (setup.py): finished with status 'done'
2022-02-16T10:30:36,654   Created wheel for capice: filename=capice-3.0.0rc4-py3-none-any.whl size=47087 sha256=b8174ee252046b7075aa5b0bff762c95a39bef20b98a032f842c74b1e7bf9a29
2022-02-16T10:30:36,657   Stored in directory: /tmp/pip-ephem-wheel-cache-lnpj28gf/wheels/48/00/be/98c5460c6a2f8490f175f917b6de51ebd9d7076e3c7c850368
2022-02-16T10:30:36,686 Successfully built capice
2022-02-16T10:30:36,695 Removed build tracker: '/tmp/pip-req-tracker-olq_axu5'