2022-02-16T10:30:30,082 Created temporary directory: /tmp/pip-ephem-wheel-cache-lnpj28gf 2022-02-16T10:30:30,088 Created temporary directory: /tmp/pip-req-tracker-olq_axu5 2022-02-16T10:30:30,089 Initialized build tracking at /tmp/pip-req-tracker-olq_axu5 2022-02-16T10:30:30,089 Created build tracker: /tmp/pip-req-tracker-olq_axu5 2022-02-16T10:30:30,090 Entered build tracker: /tmp/pip-req-tracker-olq_axu5 2022-02-16T10:30:30,091 Created temporary directory: /tmp/pip-wheel-ce5sgjf4 2022-02-16T10:30:30,164 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-02-16T10:30:30,172 2 location(s) to search for versions of capice: 2022-02-16T10:30:30,172 * https://pypi.org/simple/capice/ 2022-02-16T10:30:30,172 * https://www.piwheels.org/simple/capice/ 2022-02-16T10:30:30,173 Fetching project page and analyzing links: https://pypi.org/simple/capice/ 2022-02-16T10:30:30,174 Getting page https://pypi.org/simple/capice/ 2022-02-16T10:30:30,177 Found index url https://pypi.org/simple 2022-02-16T10:30:30,295 Found link https://files.pythonhosted.org/packages/2b/cf/eeb11d53ea46d9463d108113249f8a5b8c3023b3822835fd2579c3351924/capice-3.0.0rc0.tar.gz#sha256=580f1298bafd091d86b5ded841588032f72e40035de04a7ec5fc1516c9edc2b2 (from https://pypi.org/simple/capice/) (requires-python:>=3.7), version: 3.0.0rc0 2022-02-16T10:30:30,296 Found link https://files.pythonhosted.org/packages/c9/09/fdf73572fc6b25f60b4a5b2729454b1560abff6dd9f7907f45d86bd0ec88/capice-3.0.0rc1.tar.gz#sha256=b5eb8501028078b58b078728cb5927d30f736dec35d8d17784807fb18bece558 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc1 2022-02-16T10:30:30,298 Found link https://files.pythonhosted.org/packages/93/94/a86e20a50a6ae585d21896e5348b2ee157c3a7f49a22e53a014884d069d1/capice-3.0.0rc2.tar.gz#sha256=fd1c7a04ef0b10576b9843cecc7a188c20ae39edb4ed4a8fec27c8abc13d23f4 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc2 2022-02-16T10:30:30,299 Found link https://files.pythonhosted.org/packages/09/dc/8e44c3e88c1ee6402c17fb3c06b4e56d7580e55dd384f3c6f5c0c9f539ef/capice-3.0.0rc3.tar.gz#sha256=331d26cc87603dd46c81b0d670c6c27566c204ef5f68a150de9dced4d4d46018 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc3 2022-02-16T10:30:30,300 Found link https://files.pythonhosted.org/packages/d4/f2/05c3cdda4c711aaddea306235e5b860009d706ba41652ce147ab893aded6/capice-3.0.0rc4.tar.gz#sha256=367c328ad9259ebe6610ea4e335d073cad41187bef8d7461ee2c936f9f66de26 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc4 2022-02-16T10:30:30,301 Fetching project page and analyzing links: https://www.piwheels.org/simple/capice/ 2022-02-16T10:30:30,302 Getting page https://www.piwheels.org/simple/capice/ 2022-02-16T10:30:30,304 Found index url https://www.piwheels.org/simple 2022-02-16T10:30:30,525 Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc0-py3-none-any.whl#sha256=db7e870e65a264aa8b90e67c7ad2b62ed2662d850fac021fe20eafa759ccd21a (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.7) 2022-02-16T10:30:30,526 Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc1-py3-none-any.whl#sha256=1f1a3830a436ef9f9f34370a93dea81e04b8e4761fd8ecae8ce10955c1dddac2 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8) 2022-02-16T10:30:30,526 Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc2-py3-none-any.whl#sha256=f67afcd30fc1b242beb1b3631528be28745036179d8f8ff75fdd07d13c163206 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8) 2022-02-16T10:30:30,527 Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc3-py3-none-any.whl#sha256=4ee7f781a7a6edacfb38af661fab250bdb707a6f63b57c56612ff132ceb55c74 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8) 2022-02-16T10:30:30,527 Skipping link: not a file: https://www.piwheels.org/simple/capice/ 2022-02-16T10:30:30,528 Skipping link: not a file: https://pypi.org/simple/capice/ 2022-02-16T10:30:30,573 Given no hashes to check 1 links for project 'capice': discarding no candidates 2022-02-16T10:30:30,614 Collecting capice==3.0.0rc4 2022-02-16T10:30:30,618 Created temporary directory: /tmp/pip-unpack-elnruu5r 2022-02-16T10:30:30,864 Downloading capice-3.0.0rc4.tar.gz (31 kB) 2022-02-16T10:30:31,114 Added capice==3.0.0rc4 from https://files.pythonhosted.org/packages/d4/f2/05c3cdda4c711aaddea306235e5b860009d706ba41652ce147ab893aded6/capice-3.0.0rc4.tar.gz#sha256=367c328ad9259ebe6610ea4e335d073cad41187bef8d7461ee2c936f9f66de26 to build tracker '/tmp/pip-req-tracker-olq_axu5' 2022-02-16T10:30:31,116 Running setup.py (path:/tmp/pip-wheel-ce5sgjf4/capice_aab8c99f4a5c46df8decd0613659be50/setup.py) egg_info for package capice 2022-02-16T10:30:31,117 Created temporary directory: /tmp/pip-pip-egg-info-496bf_21 2022-02-16T10:30:31,118 Preparing metadata (setup.py): started 2022-02-16T10:30:31,120 Running command python setup.py egg_info 2022-02-16T10:30:33,045 running egg_info 2022-02-16T10:30:33,049 creating /tmp/pip-pip-egg-info-496bf_21/capice.egg-info 2022-02-16T10:30:33,064 writing manifest file '/tmp/pip-pip-egg-info-496bf_21/capice.egg-info/SOURCES.txt' 2022-02-16T10:30:33,077 package init file 'src/molgenis/__init__.py' not found (or not a regular file) 2022-02-16T10:30:33,104 writing manifest file '/tmp/pip-pip-egg-info-496bf_21/capice.egg-info/SOURCES.txt' 2022-02-16T10:30:33,224 Preparing metadata (setup.py): finished with status 'done' 2022-02-16T10:30:33,236 Source in /tmp/pip-wheel-ce5sgjf4/capice_aab8c99f4a5c46df8decd0613659be50 has version 3.0.0rc4, which satisfies requirement capice==3.0.0rc4 from https://files.pythonhosted.org/packages/d4/f2/05c3cdda4c711aaddea306235e5b860009d706ba41652ce147ab893aded6/capice-3.0.0rc4.tar.gz#sha256=367c328ad9259ebe6610ea4e335d073cad41187bef8d7461ee2c936f9f66de26 2022-02-16T10:30:33,238 Removed capice==3.0.0rc4 from https://files.pythonhosted.org/packages/d4/f2/05c3cdda4c711aaddea306235e5b860009d706ba41652ce147ab893aded6/capice-3.0.0rc4.tar.gz#sha256=367c328ad9259ebe6610ea4e335d073cad41187bef8d7461ee2c936f9f66de26 from build tracker '/tmp/pip-req-tracker-olq_axu5' 2022-02-16T10:30:33,253 Created temporary directory: /tmp/pip-unpack-j3rsgydx 2022-02-16T10:30:33,254 Building wheels for collected packages: capice 2022-02-16T10:30:33,263 Created temporary directory: /tmp/pip-wheel-7s_4qey5 2022-02-16T10:30:33,264 Building wheel for capice (setup.py): started 2022-02-16T10:30:33,266 Destination directory: /tmp/pip-wheel-7s_4qey5 2022-02-16T10:30:33,266 Running command python setup.py bdist_wheel 2022-02-16T10:30:35,169 running bdist_wheel 2022-02-16T10:30:35,561 running build 2022-02-16T10:30:35,561 running build_py 2022-02-16T10:30:35,566 package init file 'src/molgenis/__init__.py' not found (or not a regular file) 2022-02-16T10:30:35,571 creating build 2022-02-16T10:30:35,571 creating build/lib 2022-02-16T10:30:35,573 creating build/lib/molgenis 2022-02-16T10:30:35,574 creating build/lib/molgenis/capice 2022-02-16T10:30:35,576 copying src/molgenis/capice/main_train.py -> build/lib/molgenis/capice 2022-02-16T10:30:35,581 copying src/molgenis/capice/__version__.py -> build/lib/molgenis/capice 2022-02-16T10:30:35,584 copying src/molgenis/capice/main_capice.py -> build/lib/molgenis/capice 2022-02-16T10:30:35,587 copying src/molgenis/capice/__init__.py -> build/lib/molgenis/capice 2022-02-16T10:30:35,590 copying src/molgenis/capice/capice.py -> build/lib/molgenis/capice 2022-02-16T10:30:35,594 copying src/molgenis/capice/main_predict.py -> build/lib/molgenis/capice 2022-02-16T10:30:35,599 creating build/lib/molgenis/capice/vep 2022-02-16T10:30:35,601 copying src/molgenis/capice/vep/poly_phen.py -> build/lib/molgenis/capice/vep 2022-02-16T10:30:35,605 copying src/molgenis/capice/vep/template_sift_polyphen.py -> build/lib/molgenis/capice/vep 2022-02-16T10:30:35,608 copying src/molgenis/capice/vep/seq.py -> build/lib/molgenis/capice/vep 2022-02-16T10:30:35,612 copying src/molgenis/capice/vep/amino_acids.py -> build/lib/molgenis/capice/vep 2022-02-16T10:30:35,615 copying src/molgenis/capice/vep/cdna_position.py -> build/lib/molgenis/capice/vep 2022-02-16T10:30:35,618 copying src/molgenis/capice/vep/template_position.py -> build/lib/molgenis/capice/vep 2022-02-16T10:30:35,621 copying src/molgenis/capice/vep/__init__.py -> build/lib/molgenis/capice/vep 2022-02-16T10:30:35,624 copying src/molgenis/capice/vep/length.py -> build/lib/molgenis/capice/vep 2022-02-16T10:30:35,628 copying src/molgenis/capice/vep/cds_position.py -> build/lib/molgenis/capice/vep 2022-02-16T10:30:35,631 copying src/molgenis/capice/vep/sift.py -> build/lib/molgenis/capice/vep 2022-02-16T10:30:35,634 copying src/molgenis/capice/vep/type.py -> build/lib/molgenis/capice/vep 2022-02-16T10:30:35,638 copying src/molgenis/capice/vep/consequence.py -> build/lib/molgenis/capice/vep 2022-02-16T10:30:35,641 copying src/molgenis/capice/vep/template.py -> build/lib/molgenis/capice/vep 2022-02-16T10:30:35,645 copying src/molgenis/capice/vep/protein_position.py -> build/lib/molgenis/capice/vep 2022-02-16T10:30:35,650 creating build/lib/molgenis/capice/utilities 2022-02-16T10:30:35,651 copying src/molgenis/capice/utilities/enums.py -> build/lib/molgenis/capice/utilities 2022-02-16T10:30:35,655 copying src/molgenis/capice/utilities/capice_imputing.py -> build/lib/molgenis/capice/utilities 2022-02-16T10:30:35,658 copying src/molgenis/capice/utilities/load_file_postprocessor.py -> build/lib/molgenis/capice/utilities 2022-02-16T10:30:35,662 copying src/molgenis/capice/utilities/manual_vep_processor.py -> build/lib/molgenis/capice/utilities 2022-02-16T10:30:35,665 copying src/molgenis/capice/utilities/__init__.py -> build/lib/molgenis/capice/utilities 2022-02-16T10:30:35,668 copying src/molgenis/capice/utilities/input_parser.py -> build/lib/molgenis/capice/utilities 2022-02-16T10:30:35,672 copying src/molgenis/capice/utilities/preprocessor.py -> build/lib/molgenis/capice/utilities 2022-02-16T10:30:35,676 copying src/molgenis/capice/utilities/input_processor.py -> build/lib/molgenis/capice/utilities 2022-02-16T10:30:35,679 copying src/molgenis/capice/utilities/class_suggestor.py -> build/lib/molgenis/capice/utilities 2022-02-16T10:30:35,682 copying src/molgenis/capice/utilities/dynamic_loader.py -> build/lib/molgenis/capice/utilities 2022-02-16T10:30:35,686 copying src/molgenis/capice/utilities/custom_logging_filter.py -> build/lib/molgenis/capice/utilities 2022-02-16T10:30:35,689 copying src/molgenis/capice/utilities/predictor.py -> build/lib/molgenis/capice/utilities 2022-02-16T10:30:35,694 creating build/lib/molgenis/capice/validators 2022-02-16T10:30:35,695 copying src/molgenis/capice/validators/post_file_parse_validator.py -> build/lib/molgenis/capice/validators 2022-02-16T10:30:35,698 copying src/molgenis/capice/validators/__init__.py -> build/lib/molgenis/capice/validators 2022-02-16T10:30:35,701 copying src/molgenis/capice/validators/property_type_validator.py -> build/lib/molgenis/capice/validators 2022-02-16T10:30:35,704 copying src/molgenis/capice/validators/input_validator.py -> build/lib/molgenis/capice/validators 2022-02-16T10:30:35,708 copying src/molgenis/capice/validators/post_vep_processing_validator.py -> build/lib/molgenis/capice/validators 2022-02-16T10:30:35,713 creating build/lib/molgenis/capice/cli 2022-02-16T10:30:35,714 copying src/molgenis/capice/cli/args_handler_train.py -> build/lib/molgenis/capice/cli 2022-02-16T10:30:35,717 copying src/molgenis/capice/cli/__init__.py -> build/lib/molgenis/capice/cli 2022-02-16T10:30:35,720 copying src/molgenis/capice/cli/args_handler_predict.py -> build/lib/molgenis/capice/cli 2022-02-16T10:30:35,724 copying src/molgenis/capice/cli/args_handler_parent.py -> build/lib/molgenis/capice/cli 2022-02-16T10:30:35,728 creating build/lib/molgenis/capice/core 2022-02-16T10:30:35,730 copying src/molgenis/capice/core/logger.py -> build/lib/molgenis/capice/core 2022-02-16T10:30:35,734 copying src/molgenis/capice/core/capice_manager.py -> build/lib/molgenis/capice/core 2022-02-16T10:30:35,737 copying src/molgenis/capice/core/__init__.py -> build/lib/molgenis/capice/core 2022-02-16T10:30:35,740 copying src/molgenis/capice/core/args_handler.py -> build/lib/molgenis/capice/core 2022-02-16T10:30:35,744 copying src/molgenis/capice/core/capice_exporter.py -> build/lib/molgenis/capice/core 2022-02-16T10:30:35,771 /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-02-16T10:30:35,772 warnings.warn( 2022-02-16T10:30:35,776 running install 2022-02-16T10:30:35,839 running install_lib 2022-02-16T10:30:35,846 creating build/bdist.linux-armv7l 2022-02-16T10:30:35,847 creating build/bdist.linux-armv7l/wheel 2022-02-16T10:30:35,850 creating build/bdist.linux-armv7l/wheel/molgenis 2022-02-16T10:30:35,853 creating build/bdist.linux-armv7l/wheel/molgenis/capice 2022-02-16T10:30:35,860 creating build/bdist.linux-armv7l/wheel/molgenis/capice/vep 2022-02-16T10:30:35,906 creating build/bdist.linux-armv7l/wheel/molgenis/capice/utilities 2022-02-16T10:30:35,950 creating build/bdist.linux-armv7l/wheel/molgenis/capice/validators 2022-02-16T10:30:35,974 creating build/bdist.linux-armv7l/wheel/molgenis/capice/cli 2022-02-16T10:30:35,994 creating build/bdist.linux-armv7l/wheel/molgenis/capice/core 2022-02-16T10:30:36,013 running install_egg_info 2022-02-16T10:30:36,056 running egg_info 2022-02-16T10:30:36,107 writing manifest file 'src/capice.egg-info/SOURCES.txt' 2022-02-16T10:30:36,109 Copying src/capice.egg-info to build/bdist.linux-armv7l/wheel/capice-3.0.0rc4-py3.9.egg-info 2022-02-16T10:30:36,132 running install_scripts 2022-02-16T10:30:36,647 Building wheel for capice (setup.py): finished with status 'done' 2022-02-16T10:30:36,654 Created wheel for capice: filename=capice-3.0.0rc4-py3-none-any.whl size=47087 sha256=b8174ee252046b7075aa5b0bff762c95a39bef20b98a032f842c74b1e7bf9a29 2022-02-16T10:30:36,657 Stored in directory: /tmp/pip-ephem-wheel-cache-lnpj28gf/wheels/48/00/be/98c5460c6a2f8490f175f917b6de51ebd9d7076e3c7c850368 2022-02-16T10:30:36,686 Successfully built capice 2022-02-16T10:30:36,695 Removed build tracker: '/tmp/pip-req-tracker-olq_axu5'