2022-02-16T14:19:38,527 Created temporary directory: /tmp/pip-ephem-wheel-cache-bawajr7f 2022-02-16T14:19:38,533 Created temporary directory: /tmp/pip-req-tracker-kc6vklmq 2022-02-16T14:19:38,534 Initialized build tracking at /tmp/pip-req-tracker-kc6vklmq 2022-02-16T14:19:38,534 Created build tracker: /tmp/pip-req-tracker-kc6vklmq 2022-02-16T14:19:38,535 Entered build tracker: /tmp/pip-req-tracker-kc6vklmq 2022-02-16T14:19:38,536 Created temporary directory: /tmp/pip-wheel-gf0975x0 2022-02-16T14:19:38,598 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-02-16T14:19:38,607 2 location(s) to search for versions of pomoxis: 2022-02-16T14:19:38,607 * https://pypi.org/simple/pomoxis/ 2022-02-16T14:19:38,607 * https://www.piwheels.org/simple/pomoxis/ 2022-02-16T14:19:38,608 Fetching project page and analyzing links: https://pypi.org/simple/pomoxis/ 2022-02-16T14:19:38,609 Getting page https://pypi.org/simple/pomoxis/ 2022-02-16T14:19:38,613 Found index url https://pypi.org/simple 2022-02-16T14:19:38,732 Link requires a different Python (3.7.3 not in: '>=3.5.2, <3.7'): https://files.pythonhosted.org/packages/c0/59/a56134534e8982b057c383eb347cf395305c28c3fcd47e42ca3866401212/pomoxis-0.2.2a1.tar.gz#sha256=62f5121020ce00f056714240d50d580d0c23a64d502a80ea529d431655367e88 (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2022-02-16T14:19:38,734 Link requires a different Python (3.7.3 not in: '>=3.5.2, <3.7'): https://files.pythonhosted.org/packages/7f/90/ed673752a756a3477dcc242f938c46aa7fabd7e9a061438a8606c3a99e6e/pomoxis-0.2.2a2.tar.gz#sha256=cfed0307424929a9bb1e44f6acd2e1d8b5741532581ae38ce510d565979247c6 (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2022-02-16T14:19:38,735 Link requires a different Python (3.7.3 not in: '>=3.5.2, <3.7'): https://files.pythonhosted.org/packages/45/15/4b49595826cc4975e73952c5416a72c994477a5e7b099976577d88f105df/pomoxis-0.2.2.tar.gz#sha256=4001024e7c2b200e4924c2924f3c423e3f7464b51501619b3c310f51b5120df9 (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2022-02-16T14:19:38,737 Link requires a different Python (3.7.3 not in: '>=3.5.2, <3.7'): https://files.pythonhosted.org/packages/79/63/59892ab3f851f6088ba6c5f97fc1e871cbf6ce6e310b8da1e54d4d1427c1/pomoxis-0.2.3.tar.gz#sha256=e87e632ca3ef172590e059ddb7282d933294439ef71c3df67d9b56a969a45b8d (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2022-02-16T14:19:38,738 Link requires a different Python (3.7.3 not in: '>=3.5.2, <3.7'): https://files.pythonhosted.org/packages/fa/d1/392448c751e2c024e51075f04d81067530d326e33a36dd6726f617bb3b4d/pomoxis-0.2.4.tar.gz#sha256=2f4a45d1bc48725a24ede76b07cd66bb9432e0b382685f4ea0abc4715eb96fc2 (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2022-02-16T14:19:38,739 Link requires a different Python (3.7.3 not in: '>=3.5.2, <3.7'): https://files.pythonhosted.org/packages/2d/53/aac67c49cd9c3e371dfe4ae88674d68271e8d5eb3d53111edb4c44efa4d0/pomoxis-0.2.5.tar.gz#sha256=014894e06e107701593d2d470785f9ac940a6907a456cae1b2e65447f0bcf2e9 (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2022-02-16T14:19:38,741 Link requires a different Python (3.7.3 not in: '>=3.5.2, <3.7'): https://files.pythonhosted.org/packages/c1/4b/6b3e8a6407ddacfc1d8e4f22482eb2edf3ab34fe830a83bf2d4003302499/pomoxis-0.3.0a1.tar.gz#sha256=d19daeeff38498c5b270c49a3796c459b3506e0188a79b80de6a5fde914db7fd (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2022-02-16T14:19:38,742 Link requires a different Python (3.7.3 not in: '>=3.5.2, <3.7'): https://files.pythonhosted.org/packages/34/ec/2b29e6232c6b4ba278071f99ee5e6804d6a751887cd4e0302f12692ac4c4/pomoxis-0.3.0.tar.gz#sha256=945ed681b1bfc6e22c0c217b6c7854762408718ee5bd29732ce1aa2b8fb873a2 (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2022-02-16T14:19:38,744 Link requires a different Python (3.7.3 not in: '>=3.5.2, <3.7'): https://files.pythonhosted.org/packages/da/76/32271d7ddec228f6d9b1ed618fc602f51a26d20e3bea7c06ae9bae74f6a0/pomoxis-0.3.1.tar.gz#sha256=08cec3223b638480187605bb0a3a46e9c09fc401a050e292156c4e56b839564a (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2022-02-16T14:19:38,745 Link requires a different Python (3.7.3 not in: '>=3.5.2, <3.7'): https://files.pythonhosted.org/packages/81/7c/6fa149a088ec5cdca9133e3cf6a3f36138ad98361cc993f64c7148a98ae7/pomoxis-0.3.2.tar.gz#sha256=9fda874f5b242881c75cb5eabe4a2580a09f7d278e21be4cf08c3658e3048ea3 (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2022-02-16T14:19:38,747 Link requires a different Python (3.7.3 not in: '>=3.5.2, <3.7'): https://files.pythonhosted.org/packages/68/66/c63fc68165d3c8fe1dc68bd49570bb5a169c6deb6a65e551809b65dbece4/pomoxis-0.3.4.tar.gz#sha256=f05a7b0d9080b5ac4f573fcef6431f60823c6c04c09f1b9bb7569049abec23c1 (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2022-02-16T14:19:38,748 Found link https://files.pythonhosted.org/packages/79/95/7b52ac88f7f0e96966844fb8900a653f85580a0a9067f21ee5d851904277/pomoxis-0.3.5.tar.gz#sha256=77013a1d23a166289fc156c67d4927c14ace97d477bddee621a9c75ccae51344 (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.6), version: 0.3.5 2022-02-16T14:19:38,749 Found link https://files.pythonhosted.org/packages/ee/c0/4c6ec6dc89d36bc1ae220c5c61040b42e22a02c73bd1b15b893d2be32711/pomoxis-0.3.6.tar.gz#sha256=9f90f2cad4b9c0c74a2e99e166c5734dc7177b84abcf9f48965683959b20ec2b (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.6), version: 0.3.6 2022-02-16T14:19:38,751 Found link https://files.pythonhosted.org/packages/14/ff/1eed7968d46e6f49af196eb472394647a0bfc051b75eff1d3c4c0e4ab2f0/pomoxis-0.3.7.tar.gz#sha256=2e91482017074b56d29dfdcdb653338e9f3cc735eb0ea64a65419ed24bc3388b (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.6), version: 0.3.7 2022-02-16T14:19:38,753 Found link https://files.pythonhosted.org/packages/52/78/b02d8feec3b24fc2d396d24898862968128313319d2b860099395e6a66e5/pomoxis-0.3.8.tar.gz#sha256=63c44c277fe0566fe587ed1f670c330602170322f2ea03d1d68d282ba417b913 (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.6), version: 0.3.8 2022-02-16T14:19:38,754 Found link https://files.pythonhosted.org/packages/c2/65/9655de420cad7e1069a7555e66e9e6f25abe63ad4f9fd9192d0487820545/pomoxis-0.3.9.tar.gz#sha256=07fba155cbb64f770f6ec05d0d0f8e33e6be7a1e9648752610f3d46af3d49feb (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.6), version: 0.3.9 2022-02-16T14:19:38,755 Found link https://files.pythonhosted.org/packages/79/cd/a3bf0374cb5db60f2775530b5c3f940080beb20569f53bd1b1fac8a0ff48/pomoxis-0.3.10.tar.gz#sha256=4484ae563e938d9f66e22da05038d5cd6331a678de0b54d38073c12fe95d6d74 (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.6), version: 0.3.10 2022-02-16T14:19:38,756 Fetching project page and analyzing links: https://www.piwheels.org/simple/pomoxis/ 2022-02-16T14:19:38,757 Getting page https://www.piwheels.org/simple/pomoxis/ 2022-02-16T14:19:38,759 Found index url https://www.piwheels.org/simple 2022-02-16T14:19:39,010 Skipping link: No binaries permitted for pomoxis: https://www.piwheels.org/simple/pomoxis/pomoxis-0.2.2-py3-none-any.whl#sha256=137506ed8dea60a48fe1c537f1efca6630fc94cd9b23902a9c61a2979d510a1f (from https://www.piwheels.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2022-02-16T14:19:39,011 Skipping link: No binaries permitted for pomoxis: https://www.piwheels.org/simple/pomoxis/pomoxis-0.2.2a2-py3-none-any.whl#sha256=e2d1d57b5d27aecf3f81f63a4859e64dde06e7220b0717514c399dc1c719b906 (from https://www.piwheels.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2022-02-16T14:19:39,012 Skipping link: No binaries permitted for pomoxis: https://www.piwheels.org/simple/pomoxis/pomoxis-0.2.3-py3-none-any.whl#sha256=41502bbb54e7fbb8be1e9cce34d8abd0a3e3d25a5120832685aff604d89dc3ff (from https://www.piwheels.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2022-02-16T14:19:39,012 Skipping link: No binaries permitted for pomoxis: https://www.piwheels.org/simple/pomoxis/pomoxis-0.2.4-py3-none-any.whl#sha256=41ef7880d660a3a9112d5d59a2d77edbdba20a372913f4dcc5a234882619053f (from https://www.piwheels.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2022-02-16T14:19:39,013 Skipping link: No binaries permitted for pomoxis: https://www.piwheels.org/simple/pomoxis/pomoxis-0.2.5-py3-none-any.whl#sha256=73eca887702b113954a9d052a152ad120b88f9b6a64f22a0766283b4c5c86b87 (from https://www.piwheels.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2022-02-16T14:19:39,013 Skipping link: No binaries permitted for pomoxis: https://www.piwheels.org/simple/pomoxis/pomoxis-0.3.0-py3-none-any.whl#sha256=e507876035e2634ca7519c311fe01379dd977a247b47c8d99524cb2d9f8b81fd (from https://www.piwheels.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2022-02-16T14:19:39,014 Skipping link: No binaries permitted for pomoxis: https://www.piwheels.org/simple/pomoxis/pomoxis-0.3.0a1-py3-none-any.whl#sha256=dbed7beb719e16e3ba918ef4209aa02dad0617856fe68c89945766c61e4ee60d (from https://www.piwheels.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2022-02-16T14:19:39,015 Skipping link: No binaries permitted for pomoxis: https://www.piwheels.org/simple/pomoxis/pomoxis-0.3.1-py3-none-any.whl#sha256=190f089d378ca683403a4bb57608814f1ec414b2adf8e6ed8e2fedfff82838b2 (from https://www.piwheels.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2022-02-16T14:19:39,015 Skipping link: No binaries permitted for pomoxis: https://www.piwheels.org/simple/pomoxis/pomoxis-0.3.2-py3-none-any.whl#sha256=3e5ab0114626604b9552d57ad6452d15204656169d09d13a24fe76ecb293c977 (from https://www.piwheels.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2022-02-16T14:19:39,016 Skipping link: No binaries permitted for pomoxis: https://www.piwheels.org/simple/pomoxis/pomoxis-0.3.4-py3-none-any.whl#sha256=557dba2170229621980820be9b006d7e9c0fb327844443a59120f93982a1efa1 (from https://www.piwheels.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2022-02-16T14:19:39,016 Skipping link: No binaries permitted for pomoxis: https://www.piwheels.org/simple/pomoxis/pomoxis-0.3.5-py3-none-any.whl#sha256=f14ff6d018253597bed7a822c967b08b0c1326d69de44c9f61c7351a84ed5839 (from https://www.piwheels.org/simple/pomoxis/) (requires-python:>=3.6) 2022-02-16T14:19:39,017 Skipping link: No binaries permitted for pomoxis: https://www.piwheels.org/simple/pomoxis/pomoxis-0.3.6-py3-none-any.whl#sha256=d47bc4ed9f5536f6a4bba5d5dc4e43f3d6e6fcd32269903ab3e77115932eb3af (from https://www.piwheels.org/simple/pomoxis/) (requires-python:>=3.6) 2022-02-16T14:19:39,017 Skipping link: No binaries permitted for pomoxis: https://www.piwheels.org/simple/pomoxis/pomoxis-0.3.7-py3-none-any.whl#sha256=9dfe3a19a823eb384660b5327fbf11744eb7ede2997645178eadc4afe7cba7bc (from https://www.piwheels.org/simple/pomoxis/) (requires-python:>=3.6) 2022-02-16T14:19:39,018 Skipping link: No binaries permitted for pomoxis: https://www.piwheels.org/simple/pomoxis/pomoxis-0.3.8-py3-none-any.whl#sha256=c0cad42743f592c55209a6cd7daebdbc480f012da66c56cb54739ff708e78476 (from https://www.piwheels.org/simple/pomoxis/) (requires-python:>=3.6) 2022-02-16T14:19:39,018 Skipping link: No binaries permitted for pomoxis: https://www.piwheels.org/simple/pomoxis/pomoxis-0.3.9-py3-none-any.whl#sha256=cc93fc2b3a35c75d86beaf6bcfe168d762486696f9bbe1cfbb99748c97c46c66 (from https://www.piwheels.org/simple/pomoxis/) (requires-python:>=3.6) 2022-02-16T14:19:39,019 Skipping link: not a file: https://www.piwheels.org/simple/pomoxis/ 2022-02-16T14:19:39,019 Skipping link: not a file: https://pypi.org/simple/pomoxis/ 2022-02-16T14:19:39,055 Given no hashes to check 1 links for project 'pomoxis': discarding no candidates 2022-02-16T14:19:39,086 Collecting pomoxis==0.3.10 2022-02-16T14:19:39,090 Created temporary directory: /tmp/pip-unpack-x5q1my8f 2022-02-16T14:19:39,471 Downloading pomoxis-0.3.10.tar.gz (95 kB) 2022-02-16T14:19:39,707 Added pomoxis==0.3.10 from https://files.pythonhosted.org/packages/79/cd/a3bf0374cb5db60f2775530b5c3f940080beb20569f53bd1b1fac8a0ff48/pomoxis-0.3.10.tar.gz#sha256=4484ae563e938d9f66e22da05038d5cd6331a678de0b54d38073c12fe95d6d74 to build tracker '/tmp/pip-req-tracker-kc6vklmq' 2022-02-16T14:19:39,709 Running setup.py (path:/tmp/pip-wheel-gf0975x0/pomoxis_02a1552f209240d287a81bbf0042658e/setup.py) egg_info for package pomoxis 2022-02-16T14:19:39,710 Created temporary directory: /tmp/pip-pip-egg-info-bc24po6i 2022-02-16T14:19:39,711 Preparing metadata (setup.py): started 2022-02-16T14:19:39,713 Running command python setup.py egg_info 2022-02-16T14:19:41,745 running egg_info 2022-02-16T14:19:41,749 creating /tmp/pip-pip-egg-info-bc24po6i/pomoxis.egg-info 2022-02-16T14:19:41,767 writing manifest file '/tmp/pip-pip-egg-info-bc24po6i/pomoxis.egg-info/SOURCES.txt' 2022-02-16T14:19:41,798 no previously-included directories found matching 'build' 2022-02-16T14:19:41,799 no previously-included directories found matching 'docs' 2022-02-16T14:19:41,804 writing manifest file '/tmp/pip-pip-egg-info-bc24po6i/pomoxis.egg-info/SOURCES.txt' 2022-02-16T14:19:41,932 Preparing metadata (setup.py): finished with status 'done' 2022-02-16T14:19:41,944 Source in /tmp/pip-wheel-gf0975x0/pomoxis_02a1552f209240d287a81bbf0042658e has version 0.3.10, which satisfies requirement pomoxis==0.3.10 from https://files.pythonhosted.org/packages/79/cd/a3bf0374cb5db60f2775530b5c3f940080beb20569f53bd1b1fac8a0ff48/pomoxis-0.3.10.tar.gz#sha256=4484ae563e938d9f66e22da05038d5cd6331a678de0b54d38073c12fe95d6d74 2022-02-16T14:19:41,946 Removed pomoxis==0.3.10 from https://files.pythonhosted.org/packages/79/cd/a3bf0374cb5db60f2775530b5c3f940080beb20569f53bd1b1fac8a0ff48/pomoxis-0.3.10.tar.gz#sha256=4484ae563e938d9f66e22da05038d5cd6331a678de0b54d38073c12fe95d6d74 from build tracker '/tmp/pip-req-tracker-kc6vklmq' 2022-02-16T14:19:41,960 Created temporary directory: /tmp/pip-unpack-8pgzqhbi 2022-02-16T14:19:41,961 Building wheels for collected packages: pomoxis 2022-02-16T14:19:41,970 Created temporary directory: /tmp/pip-wheel-k6y41i6b 2022-02-16T14:19:41,971 Building wheel for pomoxis (setup.py): started 2022-02-16T14:19:41,973 Destination directory: /tmp/pip-wheel-k6y41i6b 2022-02-16T14:19:41,973 Running command python setup.py bdist_wheel 2022-02-16T14:19:43,982 running bdist_wheel 2022-02-16T14:19:43,990 running build 2022-02-16T14:19:43,991 running build_py 2022-02-16T14:19:44,000 creating build 2022-02-16T14:19:44,000 creating build/lib 2022-02-16T14:19:44,002 creating build/lib/pomoxis 2022-02-16T14:19:44,004 copying pomoxis/assess_homopolymers.py -> build/lib/pomoxis 2022-02-16T14:19:44,009 copying pomoxis/__init__.py -> build/lib/pomoxis 2022-02-16T14:19:44,011 copying pomoxis/subsample_bam.py -> build/lib/pomoxis 2022-02-16T14:19:44,015 copying pomoxis/summary_from_stats.py -> build/lib/pomoxis 2022-02-16T14:19:44,019 copying pomoxis/util.py -> build/lib/pomoxis 2022-02-16T14:19:44,023 copying pomoxis/ref_seqs_from_bam.py -> build/lib/pomoxis 2022-02-16T14:19:44,026 copying pomoxis/stats_from_bam.py -> build/lib/pomoxis 2022-02-16T14:19:44,030 copying pomoxis/bio.py -> build/lib/pomoxis 2022-02-16T14:19:44,033 copying pomoxis/coverage_from_bam.py -> build/lib/pomoxis 2022-02-16T14:19:44,036 copying pomoxis/qscores_from_summary.py -> build/lib/pomoxis 2022-02-16T14:19:44,039 copying pomoxis/catalogue_errors.py -> build/lib/pomoxis 2022-02-16T14:19:44,046 copying pomoxis/find_indels.py -> build/lib/pomoxis 2022-02-16T14:19:44,049 copying pomoxis/trim_alignments.py -> build/lib/pomoxis 2022-02-16T14:19:44,053 copying pomoxis/common_errors_from_bam.py -> build/lib/pomoxis 2022-02-16T14:19:44,059 running build_scripts 2022-02-16T14:19:44,060 creating build/scripts-3.7 2022-02-16T14:19:44,063 copying scripts/assess_assembly -> build/scripts-3.7 2022-02-16T14:19:44,068 copying scripts/intersect_assembly_errors -> build/scripts-3.7 2022-02-16T14:19:44,072 copying scripts/mini_align -> build/scripts-3.7 2022-02-16T14:19:44,077 copying scripts/mini_assemble -> build/scripts-3.7 2022-02-16T14:19:44,083 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-02-16T14:19:44,083 setuptools.SetuptoolsDeprecationWarning, 2022-02-16T14:19:44,088 running install 2022-02-16T14:19:44,151 running install_lib 2022-02-16T14:19:44,158 creating build/bdist.linux-armv7l 2022-02-16T14:19:44,159 creating build/bdist.linux-armv7l/wheel 2022-02-16T14:19:44,162 creating build/bdist.linux-armv7l/wheel/pomoxis 2022-02-16T14:19:44,217 running install_egg_info 2022-02-16T14:19:44,256 running egg_info 2022-02-16T14:19:44,286 no previously-included directories found matching 'build' 2022-02-16T14:19:44,287 no previously-included directories found matching 'docs' 2022-02-16T14:19:44,293 writing manifest file 'pomoxis.egg-info/SOURCES.txt' 2022-02-16T14:19:44,296 Copying pomoxis.egg-info to build/bdist.linux-armv7l/wheel/pomoxis-0.3.10-py3.7.egg-info 2022-02-16T14:19:44,321 running install_scripts 2022-02-16T14:19:44,445 creating build/bdist.linux-armv7l/wheel/pomoxis-0.3.10.data 2022-02-16T14:19:44,446 creating build/bdist.linux-armv7l/wheel/pomoxis-0.3.10.data/scripts 2022-02-16T14:19:44,784 Building wheel for pomoxis (setup.py): finished with status 'done' 2022-02-16T14:19:44,793 Created wheel for pomoxis: filename=pomoxis-0.3.10-py3-none-any.whl size=61448 sha256=90304b03517cb07ab8dfe1df05fa4d4356e10fa148ce61e5a8f576fadada2aff 2022-02-16T14:19:44,795 Stored in directory: /tmp/pip-ephem-wheel-cache-bawajr7f/wheels/56/d7/5c/8fe00c0c6c4a896b8befa8941f001da81b97aa04583d0ddc1a 2022-02-16T14:19:44,821 Successfully built pomoxis 2022-02-16T14:19:44,833 Removed build tracker: '/tmp/pip-req-tracker-kc6vklmq'