2022-02-17T15:55:46,875 Created temporary directory: /tmp/pip-ephem-wheel-cache-xs52q8m_ 2022-02-17T15:55:46,881 Created temporary directory: /tmp/pip-req-tracker-q8xq33lj 2022-02-17T15:55:46,881 Initialized build tracking at /tmp/pip-req-tracker-q8xq33lj 2022-02-17T15:55:46,882 Created build tracker: /tmp/pip-req-tracker-q8xq33lj 2022-02-17T15:55:46,882 Entered build tracker: /tmp/pip-req-tracker-q8xq33lj 2022-02-17T15:55:46,883 Created temporary directory: /tmp/pip-wheel-qbh4wx5h 2022-02-17T15:55:46,950 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-02-17T15:55:46,959 2 location(s) to search for versions of capice: 2022-02-17T15:55:46,959 * https://pypi.org/simple/capice/ 2022-02-17T15:55:46,959 * https://www.piwheels.org/simple/capice/ 2022-02-17T15:55:46,960 Fetching project page and analyzing links: https://pypi.org/simple/capice/ 2022-02-17T15:55:46,961 Getting page https://pypi.org/simple/capice/ 2022-02-17T15:55:46,964 Found index url https://pypi.org/simple 2022-02-17T15:55:47,092 Found link https://files.pythonhosted.org/packages/2b/cf/eeb11d53ea46d9463d108113249f8a5b8c3023b3822835fd2579c3351924/capice-3.0.0rc0.tar.gz#sha256=580f1298bafd091d86b5ded841588032f72e40035de04a7ec5fc1516c9edc2b2 (from https://pypi.org/simple/capice/) (requires-python:>=3.7), version: 3.0.0rc0 2022-02-17T15:55:47,093 Found link https://files.pythonhosted.org/packages/c9/09/fdf73572fc6b25f60b4a5b2729454b1560abff6dd9f7907f45d86bd0ec88/capice-3.0.0rc1.tar.gz#sha256=b5eb8501028078b58b078728cb5927d30f736dec35d8d17784807fb18bece558 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc1 2022-02-17T15:55:47,095 Found link https://files.pythonhosted.org/packages/93/94/a86e20a50a6ae585d21896e5348b2ee157c3a7f49a22e53a014884d069d1/capice-3.0.0rc2.tar.gz#sha256=fd1c7a04ef0b10576b9843cecc7a188c20ae39edb4ed4a8fec27c8abc13d23f4 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc2 2022-02-17T15:55:47,096 Found link https://files.pythonhosted.org/packages/09/dc/8e44c3e88c1ee6402c17fb3c06b4e56d7580e55dd384f3c6f5c0c9f539ef/capice-3.0.0rc3.tar.gz#sha256=331d26cc87603dd46c81b0d670c6c27566c204ef5f68a150de9dced4d4d46018 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc3 2022-02-17T15:55:47,097 Found link https://files.pythonhosted.org/packages/d4/f2/05c3cdda4c711aaddea306235e5b860009d706ba41652ce147ab893aded6/capice-3.0.0rc4.tar.gz#sha256=367c328ad9259ebe6610ea4e335d073cad41187bef8d7461ee2c936f9f66de26 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc4 2022-02-17T15:55:47,099 Found link https://files.pythonhosted.org/packages/7a/9f/ef01e39c2096b2cb591e626e9f2631a1226675292da6dd00f805fc832caa/capice-3.0.0.tar.gz#sha256=a50e36cca3b5152d62d295cd04dc7d30cd4f1ef9d8fa57e22e248fc525b1c3eb (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0 2022-02-17T15:55:47,099 Fetching project page and analyzing links: https://www.piwheels.org/simple/capice/ 2022-02-17T15:55:47,100 Getting page https://www.piwheels.org/simple/capice/ 2022-02-17T15:55:47,102 Found index url https://www.piwheels.org/simple 2022-02-17T15:55:47,311 Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc0-py3-none-any.whl#sha256=db7e870e65a264aa8b90e67c7ad2b62ed2662d850fac021fe20eafa759ccd21a (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.7) 2022-02-17T15:55:47,311 Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc1-py3-none-any.whl#sha256=1f1a3830a436ef9f9f34370a93dea81e04b8e4761fd8ecae8ce10955c1dddac2 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8) 2022-02-17T15:55:47,312 Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc2-py3-none-any.whl#sha256=f67afcd30fc1b242beb1b3631528be28745036179d8f8ff75fdd07d13c163206 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8) 2022-02-17T15:55:47,312 Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc3-py3-none-any.whl#sha256=4ee7f781a7a6edacfb38af661fab250bdb707a6f63b57c56612ff132ceb55c74 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8) 2022-02-17T15:55:47,313 Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc4-py3-none-any.whl#sha256=b8174ee252046b7075aa5b0bff762c95a39bef20b98a032f842c74b1e7bf9a29 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8) 2022-02-17T15:55:47,313 Skipping link: not a file: https://www.piwheels.org/simple/capice/ 2022-02-17T15:55:47,314 Skipping link: not a file: https://pypi.org/simple/capice/ 2022-02-17T15:55:47,358 Given no hashes to check 1 links for project 'capice': discarding no candidates 2022-02-17T15:55:47,399 Collecting capice==3.0.0 2022-02-17T15:55:47,403 Created temporary directory: /tmp/pip-unpack-i0a7ii9y 2022-02-17T15:55:47,632 Downloading capice-3.0.0.tar.gz (32 kB) 2022-02-17T15:55:47,884 Added capice==3.0.0 from https://files.pythonhosted.org/packages/7a/9f/ef01e39c2096b2cb591e626e9f2631a1226675292da6dd00f805fc832caa/capice-3.0.0.tar.gz#sha256=a50e36cca3b5152d62d295cd04dc7d30cd4f1ef9d8fa57e22e248fc525b1c3eb to build tracker '/tmp/pip-req-tracker-q8xq33lj' 2022-02-17T15:55:47,885 Running setup.py (path:/tmp/pip-wheel-qbh4wx5h/capice_5c4582b0f1eb4f4497ed4266fdf12521/setup.py) egg_info for package capice 2022-02-17T15:55:47,886 Created temporary directory: /tmp/pip-pip-egg-info-1h_ntwkg 2022-02-17T15:55:47,887 Preparing metadata (setup.py): started 2022-02-17T15:55:47,889 Running command python setup.py egg_info 2022-02-17T15:55:49,844 running egg_info 2022-02-17T15:55:49,848 creating /tmp/pip-pip-egg-info-1h_ntwkg/capice.egg-info 2022-02-17T15:55:49,864 writing manifest file '/tmp/pip-pip-egg-info-1h_ntwkg/capice.egg-info/SOURCES.txt' 2022-02-17T15:55:49,878 package init file 'src/molgenis/__init__.py' not found (or not a regular file) 2022-02-17T15:55:49,905 writing manifest file '/tmp/pip-pip-egg-info-1h_ntwkg/capice.egg-info/SOURCES.txt' 2022-02-17T15:55:50,023 Preparing metadata (setup.py): finished with status 'done' 2022-02-17T15:55:50,035 Source in /tmp/pip-wheel-qbh4wx5h/capice_5c4582b0f1eb4f4497ed4266fdf12521 has version 3.0.0, which satisfies requirement capice==3.0.0 from https://files.pythonhosted.org/packages/7a/9f/ef01e39c2096b2cb591e626e9f2631a1226675292da6dd00f805fc832caa/capice-3.0.0.tar.gz#sha256=a50e36cca3b5152d62d295cd04dc7d30cd4f1ef9d8fa57e22e248fc525b1c3eb 2022-02-17T15:55:50,037 Removed capice==3.0.0 from https://files.pythonhosted.org/packages/7a/9f/ef01e39c2096b2cb591e626e9f2631a1226675292da6dd00f805fc832caa/capice-3.0.0.tar.gz#sha256=a50e36cca3b5152d62d295cd04dc7d30cd4f1ef9d8fa57e22e248fc525b1c3eb from build tracker '/tmp/pip-req-tracker-q8xq33lj' 2022-02-17T15:55:50,051 Created temporary directory: /tmp/pip-unpack-x7ircu0l 2022-02-17T15:55:50,052 Building wheels for collected packages: capice 2022-02-17T15:55:50,062 Created temporary directory: /tmp/pip-wheel-3i57pxg6 2022-02-17T15:55:50,063 Building wheel for capice (setup.py): started 2022-02-17T15:55:50,064 Destination directory: /tmp/pip-wheel-3i57pxg6 2022-02-17T15:55:50,065 Running command python setup.py bdist_wheel 2022-02-17T15:55:52,249 running bdist_wheel 2022-02-17T15:55:52,652 running build 2022-02-17T15:55:52,653 running build_py 2022-02-17T15:55:52,658 package init file 'src/molgenis/__init__.py' not found (or not a regular file) 2022-02-17T15:55:52,662 creating build 2022-02-17T15:55:52,663 creating build/lib 2022-02-17T15:55:52,664 creating build/lib/molgenis 2022-02-17T15:55:52,665 creating build/lib/molgenis/capice 2022-02-17T15:55:52,667 copying src/molgenis/capice/main_predict.py -> build/lib/molgenis/capice 2022-02-17T15:55:52,671 copying src/molgenis/capice/main_train.py -> build/lib/molgenis/capice 2022-02-17T15:55:52,675 copying src/molgenis/capice/__version__.py -> build/lib/molgenis/capice 2022-02-17T15:55:52,679 copying src/molgenis/capice/main_capice.py -> build/lib/molgenis/capice 2022-02-17T15:55:52,682 copying src/molgenis/capice/__init__.py -> build/lib/molgenis/capice 2022-02-17T15:55:52,685 copying src/molgenis/capice/capice.py -> build/lib/molgenis/capice 2022-02-17T15:55:52,691 creating build/lib/molgenis/capice/utilities 2022-02-17T15:55:52,693 copying src/molgenis/capice/utilities/predictor.py -> build/lib/molgenis/capice/utilities 2022-02-17T15:55:52,697 copying src/molgenis/capice/utilities/class_suggestor.py -> build/lib/molgenis/capice/utilities 2022-02-17T15:55:52,701 copying src/molgenis/capice/utilities/custom_logging_filter.py -> build/lib/molgenis/capice/utilities 2022-02-17T15:55:52,704 copying src/molgenis/capice/utilities/preprocessor.py -> build/lib/molgenis/capice/utilities 2022-02-17T15:55:52,709 copying src/molgenis/capice/utilities/load_file_postprocessor.py -> build/lib/molgenis/capice/utilities 2022-02-17T15:55:52,713 copying src/molgenis/capice/utilities/dynamic_loader.py -> build/lib/molgenis/capice/utilities 2022-02-17T15:55:52,718 copying src/molgenis/capice/utilities/capice_imputing.py -> build/lib/molgenis/capice/utilities 2022-02-17T15:55:52,722 copying src/molgenis/capice/utilities/input_processor.py -> build/lib/molgenis/capice/utilities 2022-02-17T15:55:52,726 copying src/molgenis/capice/utilities/enums.py -> build/lib/molgenis/capice/utilities 2022-02-17T15:55:52,730 copying src/molgenis/capice/utilities/input_parser.py -> build/lib/molgenis/capice/utilities 2022-02-17T15:55:52,735 copying src/molgenis/capice/utilities/__init__.py -> build/lib/molgenis/capice/utilities 2022-02-17T15:55:52,739 copying src/molgenis/capice/utilities/manual_vep_processor.py -> build/lib/molgenis/capice/utilities 2022-02-17T15:55:52,745 creating build/lib/molgenis/capice/validators 2022-02-17T15:55:52,748 copying src/molgenis/capice/validators/post_vep_processing_validator.py -> build/lib/molgenis/capice/validators 2022-02-17T15:55:52,752 copying src/molgenis/capice/validators/post_file_parse_validator.py -> build/lib/molgenis/capice/validators 2022-02-17T15:55:52,756 copying src/molgenis/capice/validators/input_validator.py -> build/lib/molgenis/capice/validators 2022-02-17T15:55:52,760 copying src/molgenis/capice/validators/__init__.py -> build/lib/molgenis/capice/validators 2022-02-17T15:55:52,764 copying src/molgenis/capice/validators/property_type_validator.py -> build/lib/molgenis/capice/validators 2022-02-17T15:55:52,770 creating build/lib/molgenis/capice/core 2022-02-17T15:55:52,772 copying src/molgenis/capice/core/capice_manager.py -> build/lib/molgenis/capice/core 2022-02-17T15:55:52,777 copying src/molgenis/capice/core/logger.py -> build/lib/molgenis/capice/core 2022-02-17T15:55:52,782 copying src/molgenis/capice/core/args_handler.py -> build/lib/molgenis/capice/core 2022-02-17T15:55:52,786 copying src/molgenis/capice/core/__init__.py -> build/lib/molgenis/capice/core 2022-02-17T15:55:52,789 copying src/molgenis/capice/core/capice_exporter.py -> build/lib/molgenis/capice/core 2022-02-17T15:55:52,795 creating build/lib/molgenis/capice/cli 2022-02-17T15:55:52,797 copying src/molgenis/capice/cli/args_handler_parent.py -> build/lib/molgenis/capice/cli 2022-02-17T15:55:52,801 copying src/molgenis/capice/cli/args_handler_predict.py -> build/lib/molgenis/capice/cli 2022-02-17T15:55:52,806 copying src/molgenis/capice/cli/args_handler_train.py -> build/lib/molgenis/capice/cli 2022-02-17T15:55:52,810 copying src/molgenis/capice/cli/__init__.py -> build/lib/molgenis/capice/cli 2022-02-17T15:55:52,815 creating build/lib/molgenis/capice/vep 2022-02-17T15:55:52,822 copying src/molgenis/capice/vep/cds_position.py -> build/lib/molgenis/capice/vep 2022-02-17T15:55:52,826 copying src/molgenis/capice/vep/protein_position.py -> build/lib/molgenis/capice/vep 2022-02-17T15:55:52,830 copying src/molgenis/capice/vep/length.py -> build/lib/molgenis/capice/vep 2022-02-17T15:55:52,834 copying src/molgenis/capice/vep/poly_phen.py -> build/lib/molgenis/capice/vep 2022-02-17T15:55:52,838 copying src/molgenis/capice/vep/sift.py -> build/lib/molgenis/capice/vep 2022-02-17T15:55:52,842 copying src/molgenis/capice/vep/consequence.py -> build/lib/molgenis/capice/vep 2022-02-17T15:55:52,846 copying src/molgenis/capice/vep/seq.py -> build/lib/molgenis/capice/vep 2022-02-17T15:55:52,850 copying src/molgenis/capice/vep/template.py -> build/lib/molgenis/capice/vep 2022-02-17T15:55:52,853 copying src/molgenis/capice/vep/template_position.py -> build/lib/molgenis/capice/vep 2022-02-17T15:55:52,856 copying src/molgenis/capice/vep/template_sift_polyphen.py -> build/lib/molgenis/capice/vep 2022-02-17T15:55:52,860 copying src/molgenis/capice/vep/amino_acids.py -> build/lib/molgenis/capice/vep 2022-02-17T15:55:52,863 copying src/molgenis/capice/vep/cdna_position.py -> build/lib/molgenis/capice/vep 2022-02-17T15:55:52,866 copying src/molgenis/capice/vep/__init__.py -> build/lib/molgenis/capice/vep 2022-02-17T15:55:52,869 copying src/molgenis/capice/vep/type.py -> build/lib/molgenis/capice/vep 2022-02-17T15:55:53,260 /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-02-17T15:55:53,260 warnings.warn( 2022-02-17T15:55:53,266 running install 2022-02-17T15:55:53,329 running install_lib 2022-02-17T15:55:53,336 creating build/bdist.linux-armv7l 2022-02-17T15:55:53,338 creating build/bdist.linux-armv7l/wheel 2022-02-17T15:55:53,341 creating build/bdist.linux-armv7l/wheel/molgenis 2022-02-17T15:55:53,345 creating build/bdist.linux-armv7l/wheel/molgenis/capice 2022-02-17T15:55:53,349 creating build/bdist.linux-armv7l/wheel/molgenis/capice/utilities 2022-02-17T15:55:53,399 creating build/bdist.linux-armv7l/wheel/molgenis/capice/validators 2022-02-17T15:55:53,492 creating build/bdist.linux-armv7l/wheel/molgenis/capice/core 2022-02-17T15:55:53,510 creating build/bdist.linux-armv7l/wheel/molgenis/capice/cli 2022-02-17T15:55:53,526 creating build/bdist.linux-armv7l/wheel/molgenis/capice/vep 2022-02-17T15:55:53,583 running install_egg_info 2022-02-17T15:55:53,622 running egg_info 2022-02-17T15:55:53,669 writing manifest file 'src/capice.egg-info/SOURCES.txt' 2022-02-17T15:55:53,672 Copying src/capice.egg-info to build/bdist.linux-armv7l/wheel/capice-3.0.0-py3.9.egg-info 2022-02-17T15:55:53,695 running install_scripts 2022-02-17T15:55:54,220 Building wheel for capice (setup.py): finished with status 'done' 2022-02-17T15:55:54,228 Created wheel for capice: filename=capice-3.0.0-py3-none-any.whl size=47263 sha256=822a9c4b54c3814a1879371edfcd207b4c59c26e284a85b4367d4f9c0e070a8b 2022-02-17T15:55:54,230 Stored in directory: /tmp/pip-ephem-wheel-cache-xs52q8m_/wheels/0a/82/a5/cbd6c11cf1871ad129089f7ac7b6508bff8c0752cb73d0504d 2022-02-17T15:55:54,259 Successfully built capice 2022-02-17T15:55:54,268 Removed build tracker: '/tmp/pip-req-tracker-q8xq33lj'