2022-02-17T15:55:46,875 Created temporary directory: /tmp/pip-ephem-wheel-cache-xs52q8m_
2022-02-17T15:55:46,881 Created temporary directory: /tmp/pip-req-tracker-q8xq33lj
2022-02-17T15:55:46,881 Initialized build tracking at /tmp/pip-req-tracker-q8xq33lj
2022-02-17T15:55:46,882 Created build tracker: /tmp/pip-req-tracker-q8xq33lj
2022-02-17T15:55:46,882 Entered build tracker: /tmp/pip-req-tracker-q8xq33lj
2022-02-17T15:55:46,883 Created temporary directory: /tmp/pip-wheel-qbh4wx5h
2022-02-17T15:55:46,950 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-02-17T15:55:46,959 2 location(s) to search for versions of capice:
2022-02-17T15:55:46,959 * https://pypi.org/simple/capice/
2022-02-17T15:55:46,959 * https://www.piwheels.org/simple/capice/
2022-02-17T15:55:46,960 Fetching project page and analyzing links: https://pypi.org/simple/capice/
2022-02-17T15:55:46,961 Getting page https://pypi.org/simple/capice/
2022-02-17T15:55:46,964 Found index url https://pypi.org/simple
2022-02-17T15:55:47,092   Found link https://files.pythonhosted.org/packages/2b/cf/eeb11d53ea46d9463d108113249f8a5b8c3023b3822835fd2579c3351924/capice-3.0.0rc0.tar.gz#sha256=580f1298bafd091d86b5ded841588032f72e40035de04a7ec5fc1516c9edc2b2 (from https://pypi.org/simple/capice/) (requires-python:>=3.7), version: 3.0.0rc0
2022-02-17T15:55:47,093   Found link https://files.pythonhosted.org/packages/c9/09/fdf73572fc6b25f60b4a5b2729454b1560abff6dd9f7907f45d86bd0ec88/capice-3.0.0rc1.tar.gz#sha256=b5eb8501028078b58b078728cb5927d30f736dec35d8d17784807fb18bece558 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc1
2022-02-17T15:55:47,095   Found link https://files.pythonhosted.org/packages/93/94/a86e20a50a6ae585d21896e5348b2ee157c3a7f49a22e53a014884d069d1/capice-3.0.0rc2.tar.gz#sha256=fd1c7a04ef0b10576b9843cecc7a188c20ae39edb4ed4a8fec27c8abc13d23f4 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc2
2022-02-17T15:55:47,096   Found link https://files.pythonhosted.org/packages/09/dc/8e44c3e88c1ee6402c17fb3c06b4e56d7580e55dd384f3c6f5c0c9f539ef/capice-3.0.0rc3.tar.gz#sha256=331d26cc87603dd46c81b0d670c6c27566c204ef5f68a150de9dced4d4d46018 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc3
2022-02-17T15:55:47,097   Found link https://files.pythonhosted.org/packages/d4/f2/05c3cdda4c711aaddea306235e5b860009d706ba41652ce147ab893aded6/capice-3.0.0rc4.tar.gz#sha256=367c328ad9259ebe6610ea4e335d073cad41187bef8d7461ee2c936f9f66de26 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc4
2022-02-17T15:55:47,099   Found link https://files.pythonhosted.org/packages/7a/9f/ef01e39c2096b2cb591e626e9f2631a1226675292da6dd00f805fc832caa/capice-3.0.0.tar.gz#sha256=a50e36cca3b5152d62d295cd04dc7d30cd4f1ef9d8fa57e22e248fc525b1c3eb (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0
2022-02-17T15:55:47,099 Fetching project page and analyzing links: https://www.piwheels.org/simple/capice/
2022-02-17T15:55:47,100 Getting page https://www.piwheels.org/simple/capice/
2022-02-17T15:55:47,102 Found index url https://www.piwheels.org/simple
2022-02-17T15:55:47,311   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc0-py3-none-any.whl#sha256=db7e870e65a264aa8b90e67c7ad2b62ed2662d850fac021fe20eafa759ccd21a (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.7)
2022-02-17T15:55:47,311   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc1-py3-none-any.whl#sha256=1f1a3830a436ef9f9f34370a93dea81e04b8e4761fd8ecae8ce10955c1dddac2 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-02-17T15:55:47,312   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc2-py3-none-any.whl#sha256=f67afcd30fc1b242beb1b3631528be28745036179d8f8ff75fdd07d13c163206 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-02-17T15:55:47,312   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc3-py3-none-any.whl#sha256=4ee7f781a7a6edacfb38af661fab250bdb707a6f63b57c56612ff132ceb55c74 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-02-17T15:55:47,313   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc4-py3-none-any.whl#sha256=b8174ee252046b7075aa5b0bff762c95a39bef20b98a032f842c74b1e7bf9a29 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-02-17T15:55:47,313 Skipping link: not a file: https://www.piwheels.org/simple/capice/
2022-02-17T15:55:47,314 Skipping link: not a file: https://pypi.org/simple/capice/
2022-02-17T15:55:47,358 Given no hashes to check 1 links for project 'capice': discarding no candidates
2022-02-17T15:55:47,399 Collecting capice==3.0.0
2022-02-17T15:55:47,403   Created temporary directory: /tmp/pip-unpack-i0a7ii9y
2022-02-17T15:55:47,632   Downloading capice-3.0.0.tar.gz (32 kB)
2022-02-17T15:55:47,884   Added capice==3.0.0 from https://files.pythonhosted.org/packages/7a/9f/ef01e39c2096b2cb591e626e9f2631a1226675292da6dd00f805fc832caa/capice-3.0.0.tar.gz#sha256=a50e36cca3b5152d62d295cd04dc7d30cd4f1ef9d8fa57e22e248fc525b1c3eb to build tracker '/tmp/pip-req-tracker-q8xq33lj'
2022-02-17T15:55:47,885   Running setup.py (path:/tmp/pip-wheel-qbh4wx5h/capice_5c4582b0f1eb4f4497ed4266fdf12521/setup.py) egg_info for package capice
2022-02-17T15:55:47,886   Created temporary directory: /tmp/pip-pip-egg-info-1h_ntwkg
2022-02-17T15:55:47,887   Preparing metadata (setup.py): started
2022-02-17T15:55:47,889   Running command python setup.py egg_info
2022-02-17T15:55:49,844   running egg_info
2022-02-17T15:55:49,848   creating /tmp/pip-pip-egg-info-1h_ntwkg/capice.egg-info
2022-02-17T15:55:49,864   writing manifest file '/tmp/pip-pip-egg-info-1h_ntwkg/capice.egg-info/SOURCES.txt'
2022-02-17T15:55:49,878   package init file 'src/molgenis/__init__.py' not found (or not a regular file)
2022-02-17T15:55:49,905   writing manifest file '/tmp/pip-pip-egg-info-1h_ntwkg/capice.egg-info/SOURCES.txt'
2022-02-17T15:55:50,023   Preparing metadata (setup.py): finished with status 'done'
2022-02-17T15:55:50,035   Source in /tmp/pip-wheel-qbh4wx5h/capice_5c4582b0f1eb4f4497ed4266fdf12521 has version 3.0.0, which satisfies requirement capice==3.0.0 from https://files.pythonhosted.org/packages/7a/9f/ef01e39c2096b2cb591e626e9f2631a1226675292da6dd00f805fc832caa/capice-3.0.0.tar.gz#sha256=a50e36cca3b5152d62d295cd04dc7d30cd4f1ef9d8fa57e22e248fc525b1c3eb
2022-02-17T15:55:50,037   Removed capice==3.0.0 from https://files.pythonhosted.org/packages/7a/9f/ef01e39c2096b2cb591e626e9f2631a1226675292da6dd00f805fc832caa/capice-3.0.0.tar.gz#sha256=a50e36cca3b5152d62d295cd04dc7d30cd4f1ef9d8fa57e22e248fc525b1c3eb from build tracker '/tmp/pip-req-tracker-q8xq33lj'
2022-02-17T15:55:50,051 Created temporary directory: /tmp/pip-unpack-x7ircu0l
2022-02-17T15:55:50,052 Building wheels for collected packages: capice
2022-02-17T15:55:50,062   Created temporary directory: /tmp/pip-wheel-3i57pxg6
2022-02-17T15:55:50,063   Building wheel for capice (setup.py): started
2022-02-17T15:55:50,064   Destination directory: /tmp/pip-wheel-3i57pxg6
2022-02-17T15:55:50,065   Running command python setup.py bdist_wheel
2022-02-17T15:55:52,249   running bdist_wheel
2022-02-17T15:55:52,652   running build
2022-02-17T15:55:52,653   running build_py
2022-02-17T15:55:52,658   package init file 'src/molgenis/__init__.py' not found (or not a regular file)
2022-02-17T15:55:52,662   creating build
2022-02-17T15:55:52,663   creating build/lib
2022-02-17T15:55:52,664   creating build/lib/molgenis
2022-02-17T15:55:52,665   creating build/lib/molgenis/capice
2022-02-17T15:55:52,667   copying src/molgenis/capice/main_predict.py -> build/lib/molgenis/capice
2022-02-17T15:55:52,671   copying src/molgenis/capice/main_train.py -> build/lib/molgenis/capice
2022-02-17T15:55:52,675   copying src/molgenis/capice/__version__.py -> build/lib/molgenis/capice
2022-02-17T15:55:52,679   copying src/molgenis/capice/main_capice.py -> build/lib/molgenis/capice
2022-02-17T15:55:52,682   copying src/molgenis/capice/__init__.py -> build/lib/molgenis/capice
2022-02-17T15:55:52,685   copying src/molgenis/capice/capice.py -> build/lib/molgenis/capice
2022-02-17T15:55:52,691   creating build/lib/molgenis/capice/utilities
2022-02-17T15:55:52,693   copying src/molgenis/capice/utilities/predictor.py -> build/lib/molgenis/capice/utilities
2022-02-17T15:55:52,697   copying src/molgenis/capice/utilities/class_suggestor.py -> build/lib/molgenis/capice/utilities
2022-02-17T15:55:52,701   copying src/molgenis/capice/utilities/custom_logging_filter.py -> build/lib/molgenis/capice/utilities
2022-02-17T15:55:52,704   copying src/molgenis/capice/utilities/preprocessor.py -> build/lib/molgenis/capice/utilities
2022-02-17T15:55:52,709   copying src/molgenis/capice/utilities/load_file_postprocessor.py -> build/lib/molgenis/capice/utilities
2022-02-17T15:55:52,713   copying src/molgenis/capice/utilities/dynamic_loader.py -> build/lib/molgenis/capice/utilities
2022-02-17T15:55:52,718   copying src/molgenis/capice/utilities/capice_imputing.py -> build/lib/molgenis/capice/utilities
2022-02-17T15:55:52,722   copying src/molgenis/capice/utilities/input_processor.py -> build/lib/molgenis/capice/utilities
2022-02-17T15:55:52,726   copying src/molgenis/capice/utilities/enums.py -> build/lib/molgenis/capice/utilities
2022-02-17T15:55:52,730   copying src/molgenis/capice/utilities/input_parser.py -> build/lib/molgenis/capice/utilities
2022-02-17T15:55:52,735   copying src/molgenis/capice/utilities/__init__.py -> build/lib/molgenis/capice/utilities
2022-02-17T15:55:52,739   copying src/molgenis/capice/utilities/manual_vep_processor.py -> build/lib/molgenis/capice/utilities
2022-02-17T15:55:52,745   creating build/lib/molgenis/capice/validators
2022-02-17T15:55:52,748   copying src/molgenis/capice/validators/post_vep_processing_validator.py -> build/lib/molgenis/capice/validators
2022-02-17T15:55:52,752   copying src/molgenis/capice/validators/post_file_parse_validator.py -> build/lib/molgenis/capice/validators
2022-02-17T15:55:52,756   copying src/molgenis/capice/validators/input_validator.py -> build/lib/molgenis/capice/validators
2022-02-17T15:55:52,760   copying src/molgenis/capice/validators/__init__.py -> build/lib/molgenis/capice/validators
2022-02-17T15:55:52,764   copying src/molgenis/capice/validators/property_type_validator.py -> build/lib/molgenis/capice/validators
2022-02-17T15:55:52,770   creating build/lib/molgenis/capice/core
2022-02-17T15:55:52,772   copying src/molgenis/capice/core/capice_manager.py -> build/lib/molgenis/capice/core
2022-02-17T15:55:52,777   copying src/molgenis/capice/core/logger.py -> build/lib/molgenis/capice/core
2022-02-17T15:55:52,782   copying src/molgenis/capice/core/args_handler.py -> build/lib/molgenis/capice/core
2022-02-17T15:55:52,786   copying src/molgenis/capice/core/__init__.py -> build/lib/molgenis/capice/core
2022-02-17T15:55:52,789   copying src/molgenis/capice/core/capice_exporter.py -> build/lib/molgenis/capice/core
2022-02-17T15:55:52,795   creating build/lib/molgenis/capice/cli
2022-02-17T15:55:52,797   copying src/molgenis/capice/cli/args_handler_parent.py -> build/lib/molgenis/capice/cli
2022-02-17T15:55:52,801   copying src/molgenis/capice/cli/args_handler_predict.py -> build/lib/molgenis/capice/cli
2022-02-17T15:55:52,806   copying src/molgenis/capice/cli/args_handler_train.py -> build/lib/molgenis/capice/cli
2022-02-17T15:55:52,810   copying src/molgenis/capice/cli/__init__.py -> build/lib/molgenis/capice/cli
2022-02-17T15:55:52,815   creating build/lib/molgenis/capice/vep
2022-02-17T15:55:52,822   copying src/molgenis/capice/vep/cds_position.py -> build/lib/molgenis/capice/vep
2022-02-17T15:55:52,826   copying src/molgenis/capice/vep/protein_position.py -> build/lib/molgenis/capice/vep
2022-02-17T15:55:52,830   copying src/molgenis/capice/vep/length.py -> build/lib/molgenis/capice/vep
2022-02-17T15:55:52,834   copying src/molgenis/capice/vep/poly_phen.py -> build/lib/molgenis/capice/vep
2022-02-17T15:55:52,838   copying src/molgenis/capice/vep/sift.py -> build/lib/molgenis/capice/vep
2022-02-17T15:55:52,842   copying src/molgenis/capice/vep/consequence.py -> build/lib/molgenis/capice/vep
2022-02-17T15:55:52,846   copying src/molgenis/capice/vep/seq.py -> build/lib/molgenis/capice/vep
2022-02-17T15:55:52,850   copying src/molgenis/capice/vep/template.py -> build/lib/molgenis/capice/vep
2022-02-17T15:55:52,853   copying src/molgenis/capice/vep/template_position.py -> build/lib/molgenis/capice/vep
2022-02-17T15:55:52,856   copying src/molgenis/capice/vep/template_sift_polyphen.py -> build/lib/molgenis/capice/vep
2022-02-17T15:55:52,860   copying src/molgenis/capice/vep/amino_acids.py -> build/lib/molgenis/capice/vep
2022-02-17T15:55:52,863   copying src/molgenis/capice/vep/cdna_position.py -> build/lib/molgenis/capice/vep
2022-02-17T15:55:52,866   copying src/molgenis/capice/vep/__init__.py -> build/lib/molgenis/capice/vep
2022-02-17T15:55:52,869   copying src/molgenis/capice/vep/type.py -> build/lib/molgenis/capice/vep
2022-02-17T15:55:53,260   /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-02-17T15:55:53,260     warnings.warn(
2022-02-17T15:55:53,266   running install
2022-02-17T15:55:53,329   running install_lib
2022-02-17T15:55:53,336   creating build/bdist.linux-armv7l
2022-02-17T15:55:53,338   creating build/bdist.linux-armv7l/wheel
2022-02-17T15:55:53,341   creating build/bdist.linux-armv7l/wheel/molgenis
2022-02-17T15:55:53,345   creating build/bdist.linux-armv7l/wheel/molgenis/capice
2022-02-17T15:55:53,349   creating build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-02-17T15:55:53,399   creating build/bdist.linux-armv7l/wheel/molgenis/capice/validators
2022-02-17T15:55:53,492   creating build/bdist.linux-armv7l/wheel/molgenis/capice/core
2022-02-17T15:55:53,510   creating build/bdist.linux-armv7l/wheel/molgenis/capice/cli
2022-02-17T15:55:53,526   creating build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-02-17T15:55:53,583   running install_egg_info
2022-02-17T15:55:53,622   running egg_info
2022-02-17T15:55:53,669   writing manifest file 'src/capice.egg-info/SOURCES.txt'
2022-02-17T15:55:53,672   Copying src/capice.egg-info to build/bdist.linux-armv7l/wheel/capice-3.0.0-py3.9.egg-info
2022-02-17T15:55:53,695   running install_scripts
2022-02-17T15:55:54,220   Building wheel for capice (setup.py): finished with status 'done'
2022-02-17T15:55:54,228   Created wheel for capice: filename=capice-3.0.0-py3-none-any.whl size=47263 sha256=822a9c4b54c3814a1879371edfcd207b4c59c26e284a85b4367d4f9c0e070a8b
2022-02-17T15:55:54,230   Stored in directory: /tmp/pip-ephem-wheel-cache-xs52q8m_/wheels/0a/82/a5/cbd6c11cf1871ad129089f7ac7b6508bff8c0752cb73d0504d
2022-02-17T15:55:54,259 Successfully built capice
2022-02-17T15:55:54,268 Removed build tracker: '/tmp/pip-req-tracker-q8xq33lj'