2022-02-18T14:30:39,498 Created temporary directory: /tmp/pip-ephem-wheel-cache-z4glnmjq 2022-02-18T14:30:39,504 Created temporary directory: /tmp/pip-req-tracker-wye13gsf 2022-02-18T14:30:39,505 Initialized build tracking at /tmp/pip-req-tracker-wye13gsf 2022-02-18T14:30:39,505 Created build tracker: /tmp/pip-req-tracker-wye13gsf 2022-02-18T14:30:39,506 Entered build tracker: /tmp/pip-req-tracker-wye13gsf 2022-02-18T14:30:39,507 Created temporary directory: /tmp/pip-wheel-g4i_ul56 2022-02-18T14:30:39,581 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-02-18T14:30:39,590 2 location(s) to search for versions of superpang: 2022-02-18T14:30:39,590 * https://pypi.org/simple/superpang/ 2022-02-18T14:30:39,590 * https://www.piwheels.org/simple/superpang/ 2022-02-18T14:30:39,591 Fetching project page and analyzing links: https://pypi.org/simple/superpang/ 2022-02-18T14:30:39,592 Getting page https://pypi.org/simple/superpang/ 2022-02-18T14:30:39,595 Found index url https://pypi.org/simple 2022-02-18T14:30:39,713 Found link https://files.pythonhosted.org/packages/9c/57/83a3974eb6f1728623e29d7fc3c5f3ccb0702c44d756e2b1f6f1b92798e1/SuperPang-0.7.0.post1.tar.gz#sha256=66dc5c719116910f583d0ff2232e7d726e1d7ec87ddc3eb0c2b96223d557fa76 (from https://pypi.org/simple/superpang/) (requires-python:>=3.8), version: 0.7.0.post1 2022-02-18T14:30:39,715 Found link https://files.pythonhosted.org/packages/e8/23/ca26f8c2506d465d8b8383c1b8b60d052a2f86b58de691502e328dc925b0/SuperPang-0.8.0.tar.gz#sha256=43008682242c2d1620b6bd917f4efc5b482dfd0a28bcfe9495dc1801b06c8ef4 (from https://pypi.org/simple/superpang/) (requires-python:>=3.8), version: 0.8.0 2022-02-18T14:30:39,716 Found link https://files.pythonhosted.org/packages/4a/4f/ece0df30b902a9e6ff8d63632251d4c67ecd909cd7bde08a142d56a24880/SuperPang-0.8.1.tar.gz#sha256=28c713b15a3bd3fb2dd7548a815acb91168dca2e765a5a213cc7c13ef85b5d3d (from https://pypi.org/simple/superpang/) (requires-python:>=3.8), version: 0.8.1 2022-02-18T14:30:39,718 Found link https://files.pythonhosted.org/packages/fc/fb/e92ac7479a7f8edb9864ece82b66104ad145015cc3abc02a4a37c60c4e32/SuperPang-0.9.0.tar.gz#sha256=d7919000bd511bfdcc435b08dcd23c9c4e1ed93cdfa96a5f1a60cc153e4678b5 (from https://pypi.org/simple/superpang/) (requires-python:>=3.8), version: 0.9.0 2022-02-18T14:30:39,718 Fetching project page and analyzing links: https://www.piwheels.org/simple/superpang/ 2022-02-18T14:30:39,719 Getting page https://www.piwheels.org/simple/superpang/ 2022-02-18T14:30:39,721 Found index url https://www.piwheels.org/simple 2022-02-18T14:30:39,933 Skipping link: No binaries permitted for superpang: https://www.piwheels.org/simple/superpang/SuperPang-0.7.0.post1-py3-none-any.whl#sha256=7b5427f75343e311a397b472cfed232b2549783866aa715ac6cee45857734501 (from https://www.piwheels.org/simple/superpang/) (requires-python:>=3.8) 2022-02-18T14:30:39,934 Skipping link: not a file: https://www.piwheels.org/simple/superpang/ 2022-02-18T14:30:39,935 Skipping link: not a file: https://pypi.org/simple/superpang/ 2022-02-18T14:30:39,979 Given no hashes to check 1 links for project 'superpang': discarding no candidates 2022-02-18T14:30:40,021 Collecting superpang==0.9.0 2022-02-18T14:30:40,025 Created temporary directory: /tmp/pip-unpack-a0dhfi4v 2022-02-18T14:30:40,537 Downloading SuperPang-0.9.0.tar.gz (6.3 MB) 2022-02-18T14:30:44,321 Added superpang==0.9.0 from https://files.pythonhosted.org/packages/fc/fb/e92ac7479a7f8edb9864ece82b66104ad145015cc3abc02a4a37c60c4e32/SuperPang-0.9.0.tar.gz#sha256=d7919000bd511bfdcc435b08dcd23c9c4e1ed93cdfa96a5f1a60cc153e4678b5 to build tracker '/tmp/pip-req-tracker-wye13gsf' 2022-02-18T14:30:44,322 Running setup.py (path:/tmp/pip-wheel-g4i_ul56/superpang_a4be59a7bec24954be849f26761fc769/setup.py) egg_info for package superpang 2022-02-18T14:30:44,324 Created temporary directory: /tmp/pip-pip-egg-info-89mtpqww 2022-02-18T14:30:44,324 Preparing metadata (setup.py): started 2022-02-18T14:30:44,326 Running command python setup.py egg_info 2022-02-18T14:30:46,704 running egg_info 2022-02-18T14:30:46,708 creating /tmp/pip-pip-egg-info-89mtpqww/SuperPang.egg-info 2022-02-18T14:30:46,722 writing manifest file '/tmp/pip-pip-egg-info-89mtpqww/SuperPang.egg-info/SOURCES.txt' 2022-02-18T14:30:47,164 writing manifest file '/tmp/pip-pip-egg-info-89mtpqww/SuperPang.egg-info/SOURCES.txt' 2022-02-18T14:30:47,298 Preparing metadata (setup.py): finished with status 'done' 2022-02-18T14:30:47,309 Source in /tmp/pip-wheel-g4i_ul56/superpang_a4be59a7bec24954be849f26761fc769 has version 0.9.0, which satisfies requirement superpang==0.9.0 from https://files.pythonhosted.org/packages/fc/fb/e92ac7479a7f8edb9864ece82b66104ad145015cc3abc02a4a37c60c4e32/SuperPang-0.9.0.tar.gz#sha256=d7919000bd511bfdcc435b08dcd23c9c4e1ed93cdfa96a5f1a60cc153e4678b5 2022-02-18T14:30:47,311 Removed superpang==0.9.0 from https://files.pythonhosted.org/packages/fc/fb/e92ac7479a7f8edb9864ece82b66104ad145015cc3abc02a4a37c60c4e32/SuperPang-0.9.0.tar.gz#sha256=d7919000bd511bfdcc435b08dcd23c9c4e1ed93cdfa96a5f1a60cc153e4678b5 from build tracker '/tmp/pip-req-tracker-wye13gsf' 2022-02-18T14:30:47,324 Created temporary directory: /tmp/pip-unpack-mhhewo9h 2022-02-18T14:30:47,325 Building wheels for collected packages: superpang 2022-02-18T14:30:47,334 Created temporary directory: /tmp/pip-wheel-kig2rwat 2022-02-18T14:30:47,334 Building wheel for superpang (setup.py): started 2022-02-18T14:30:47,336 Destination directory: /tmp/pip-wheel-kig2rwat 2022-02-18T14:30:47,337 Running command python setup.py bdist_wheel 2022-02-18T14:30:49,261 running bdist_wheel 2022-02-18T14:30:49,646 running build 2022-02-18T14:30:49,646 running build_py 2022-02-18T14:30:49,653 creating build 2022-02-18T14:30:49,654 creating build/lib.linux-armv7l-3.9 2022-02-18T14:30:49,655 creating build/lib.linux-armv7l-3.9/SuperPang 2022-02-18T14:30:49,657 copying SuperPang/__init__.py -> build/lib.linux-armv7l-3.9/SuperPang 2022-02-18T14:30:49,661 creating build/lib.linux-armv7l-3.9/SuperPang/lib 2022-02-18T14:30:49,662 copying SuperPang/lib/Assembler.py -> build/lib.linux-armv7l-3.9/SuperPang/lib 2022-02-18T14:30:49,669 copying SuperPang/lib/utils.py -> build/lib.linux-armv7l-3.9/SuperPang/lib 2022-02-18T14:30:49,672 copying SuperPang/lib/__init__.py -> build/lib.linux-armv7l-3.9/SuperPang/lib 2022-02-18T14:30:49,674 running egg_info 2022-02-18T14:30:49,722 writing manifest file 'SuperPang.egg-info/SOURCES.txt' 2022-02-18T14:30:49,728 creating build/lib.linux-armv7l-3.9/SuperPang/scripts 2022-02-18T14:30:49,730 copying SuperPang/scripts/SuperPang.py -> build/lib.linux-armv7l-3.9/SuperPang/scripts 2022-02-18T14:30:49,735 copying SuperPang/scripts/condense-edges.py -> build/lib.linux-armv7l-3.9/SuperPang/scripts 2022-02-18T14:30:49,740 copying SuperPang/scripts/homogenize.py -> build/lib.linux-armv7l-3.9/SuperPang/scripts 2022-02-18T14:30:49,745 copying SuperPang/scripts/test-SuperPang.py -> build/lib.linux-armv7l-3.9/SuperPang/scripts 2022-02-18T14:30:49,748 creating build/lib.linux-armv7l-3.9/SuperPang/test_data 2022-02-18T14:30:49,750 copying SuperPang/test_data/2636415981.fna -> build/lib.linux-armv7l-3.9/SuperPang/test_data 2022-02-18T14:30:49,878 copying SuperPang/test_data/2636416036.fna -> build/lib.linux-armv7l-3.9/SuperPang/test_data 2022-02-18T14:30:49,968 copying SuperPang/test_data/2636416061.fna -> build/lib.linux-armv7l-3.9/SuperPang/test_data 2022-02-18T14:30:50,087 copying SuperPang/test_data/2636416062.fna -> build/lib.linux-armv7l-3.9/SuperPang/test_data 2022-02-18T14:30:50,210 copying SuperPang/test_data/2639762512.fna -> build/lib.linux-armv7l-3.9/SuperPang/test_data 2022-02-18T14:30:50,335 copying SuperPang/test_data/2639762514.fna -> build/lib.linux-armv7l-3.9/SuperPang/test_data 2022-02-18T14:30:50,450 copying SuperPang/test_data/2639762515.fna -> build/lib.linux-armv7l-3.9/SuperPang/test_data 2022-02-18T14:30:50,570 copying SuperPang/test_data/2639762516.fna -> build/lib.linux-armv7l-3.9/SuperPang/test_data 2022-02-18T14:30:50,688 copying SuperPang/test_data/2844342787.fna -> build/lib.linux-armv7l-3.9/SuperPang/test_data 2022-02-18T14:30:50,813 copying SuperPang/lib/Compressor.c -> build/lib.linux-armv7l-3.9/SuperPang/lib 2022-02-18T14:30:50,866 running build_ext 2022-02-18T14:30:50,878 creating build/temp.linux-armv7l-3.9 2022-02-18T14:30:50,878 creating build/temp.linux-armv7l-3.9/SuperPang 2022-02-18T14:30:50,879 creating build/temp.linux-armv7l-3.9/SuperPang/lib 2022-02-18T14:30:50,881 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c SuperPang/lib/Compressor.c -o build/temp.linux-armv7l-3.9/SuperPang/lib/Compressor.o 2022-02-18T14:30:51,706 SuperPang/lib/Compressor.c:694:10: fatal error: numpy/arrayobject.h: No such file or directory 2022-02-18T14:30:51,707 694 | #include "numpy/arrayobject.h" 2022-02-18T14:30:51,707 | ^~~~~~~~~~~~~~~~~~~~~ 2022-02-18T14:30:51,707 compilation terminated. 2022-02-18T14:30:51,717 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2022-02-18T14:30:51,888 ERROR: [present-diagnostic] python setup.py bdist_wheel exited with 1 2022-02-18T14:30:51,928 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2022-02-18T14:30:51,928 exec(compile('"'"''"'"''"'"' 2022-02-18T14:30:51,928 # This is -- a caller that pip uses to run setup.py 2022-02-18T14:30:51,928 # 2022-02-18T14:30:51,928 # - It imports setuptools before invoking setup.py, to enable projects that directly 2022-02-18T14:30:51,928 # import from `distutils.core` to work with newer packaging standards. 2022-02-18T14:30:51,928 # - It provides a clear error message when setuptools is not installed. 2022-02-18T14:30:51,928 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2022-02-18T14:30:51,928 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2022-02-18T14:30:51,928 # manifest_maker: standard file '"'"'-c'"'"' not found". 2022-02-18T14:30:51,928 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2022-02-18T14:30:51,928 import os, sys, tokenize 2022-02-18T14:30:51,928 2022-02-18T14:30:51,928 try: 2022-02-18T14:30:51,928 import setuptools 2022-02-18T14:30:51,928 except ImportError as error: 2022-02-18T14:30:51,928 print( 2022-02-18T14:30:51,928 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2022-02-18T14:30:51,928 "the build environment.", 2022-02-18T14:30:51,928 file=sys.stderr, 2022-02-18T14:30:51,928 ) 2022-02-18T14:30:51,928 sys.exit(1) 2022-02-18T14:30:51,928 2022-02-18T14:30:51,928 __file__ = %r 2022-02-18T14:30:51,928 sys.argv[0] = __file__ 2022-02-18T14:30:51,928 2022-02-18T14:30:51,928 if os.path.exists(__file__): 2022-02-18T14:30:51,928 filename = __file__ 2022-02-18T14:30:51,928 with tokenize.open(__file__) as f: 2022-02-18T14:30:51,928 setup_py_code = f.read() 2022-02-18T14:30:51,928 else: 2022-02-18T14:30:51,928 filename = "" 2022-02-18T14:30:51,928 setup_py_code = "from setuptools import setup; setup()" 2022-02-18T14:30:51,928 2022-02-18T14:30:51,928 exec(compile(setup_py_code, filename, "exec")) 2022-02-18T14:30:51,928 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-g4i_ul56/superpang_a4be59a7bec24954be849f26761fc769/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-kig2rwat[/] 2022-02-18T14:30:51,929 [bold magenta]cwd[/]: /tmp/pip-wheel-g4i_ul56/superpang_a4be59a7bec24954be849f26761fc769/ 2022-02-18T14:30:51,929 Building wheel for superpang (setup.py): finished with status 'error' 2022-02-18T14:30:51,931 ERROR: Failed building wheel for superpang 2022-02-18T14:30:51,933 Running setup.py clean for superpang 2022-02-18T14:30:51,935 Running command python setup.py clean 2022-02-18T14:30:53,779 running clean 2022-02-18T14:30:53,785 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2022-02-18T14:30:53,790 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2022-02-18T14:30:53,824 'build/bdist.linux-armv7l' does not exist -- can't clean it 2022-02-18T14:30:53,825 'build/scripts-3.9' does not exist -- can't clean it 2022-02-18T14:30:53,944 Failed to build superpang 2022-02-18T14:30:53,947 ERROR: Failed to build one or more wheels 2022-02-18T14:30:53,950 Exception information: 2022-02-18T14:30:53,950 Traceback (most recent call last): 2022-02-18T14:30:53,950 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 167, in exc_logging_wrapper 2022-02-18T14:30:53,950 status = run_func(*args) 2022-02-18T14:30:53,950 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2022-02-18T14:30:53,950 return func(self, options, args) 2022-02-18T14:30:53,950 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 176, in run 2022-02-18T14:30:53,950 raise CommandError("Failed to build one or more wheels") 2022-02-18T14:30:53,950 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2022-02-18T14:30:53,956 Removed build tracker: '/tmp/pip-req-tracker-wye13gsf'