2022-02-18T17:27:12,700 Created temporary directory: /tmp/pip-ephem-wheel-cache-9m3j6ujt 2022-02-18T17:27:12,706 Created temporary directory: /tmp/pip-req-tracker-a8fc24t5 2022-02-18T17:27:12,707 Initialized build tracking at /tmp/pip-req-tracker-a8fc24t5 2022-02-18T17:27:12,707 Created build tracker: /tmp/pip-req-tracker-a8fc24t5 2022-02-18T17:27:12,707 Entered build tracker: /tmp/pip-req-tracker-a8fc24t5 2022-02-18T17:27:12,708 Created temporary directory: /tmp/pip-wheel-k2n34i1c 2022-02-18T17:27:12,771 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-02-18T17:27:12,780 2 location(s) to search for versions of oxdna-analysis-tools: 2022-02-18T17:27:12,780 * https://pypi.org/simple/oxdna-analysis-tools/ 2022-02-18T17:27:12,780 * https://www.piwheels.org/simple/oxdna-analysis-tools/ 2022-02-18T17:27:12,781 Fetching project page and analyzing links: https://pypi.org/simple/oxdna-analysis-tools/ 2022-02-18T17:27:12,782 Getting page https://pypi.org/simple/oxdna-analysis-tools/ 2022-02-18T17:27:12,785 Found index url https://pypi.org/simple 2022-02-18T17:27:12,915 Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/ac/f8/60aaa35eef859722960ae6fc01c379801cfe84dac081cb16bc5211209e00/oxDNA_analysis_tools-1.0.0-py3-none-any.whl#sha256=aad31ef6b41c10ea9ed03f1625b7ee8ce0834704a848c6e1f6c28dce20b2711b (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-18T17:27:12,917 Found link https://files.pythonhosted.org/packages/4a/e5/47c5d6daa03dabd733883bf55cb8d816ea67d906f1fcb488f5153f4dc43e/oxDNA_analysis_tools-1.0.0.tar.gz#sha256=a75fb26c9d1d87688c7312fdd6d2e1bd16230c8f74f80fb2291eeaf168c056ee (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.0 2022-02-18T17:27:12,917 Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/89/ff/395029dea21f844393d989cbb26c614dd86f822bba65d78ed5a7748aca6a/oxDNA_analysis_tools-1.0.1-py3-none-any.whl#sha256=3221408dd47a42b38484906b35d19479588ff4069288f9ce7d7817897da455c7 (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-18T17:27:12,919 Found link https://files.pythonhosted.org/packages/df/13/17bfb0a3fd14aa842b566f34308d54529d61ea01fada217af9048971d50c/oxDNA_analysis_tools-1.0.1.tar.gz#sha256=a3e8ae09b1258872561a5559f458a72942879cba8a07a0f24caaec7e409d4cb1 (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.1 2022-02-18T17:27:12,920 Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/82/49/f5e696f37f5715a0aeb1ef04eb86660c5659ef4bf2f4fb8903dc7227e118/oxDNA_analysis_tools-1.0.2-py3-none-any.whl#sha256=16719e55b02c4da05c3f2f954c4e5dc43e599213876539e8abff5160cd0caece (from 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(requires-python:>=3.6), version: 1.0.4 2022-02-18T17:27:12,926 Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/bf/0d/a9da9beb9a7bd71866a835fa8aa2f07811d666644c916aa2765add616e05/oxDNA_analysis_tools-1.0.5-py3-none-any.whl#sha256=7edbf6f2d55ac4cb5f7fecd7cf00df2c38f92710de1da90559ddc92d622c827f (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-18T17:27:12,927 Found link https://files.pythonhosted.org/packages/89/1d/8292c563a5aaad1f604049db7273368ea18b868c75dc2d88b70695ac3bbd/oxDNA_analysis_tools-1.0.5.tar.gz#sha256=6c993e210fbe9f3d1d7f85d615419e2687f8f780bc1f94716fc9bb59f47db9fd (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.5 2022-02-18T17:27:12,928 Skipping link: No binaries permitted for oxdna-analysis-tools: 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https://files.pythonhosted.org/packages/bf/5d/04a82031d0f96d67578e3b864fdc087e04a637af58ef526bee6009df36cf/oxDNA_analysis_tools-1.0.8.tar.gz#sha256=c0f9ce1b79c645350c553c960e9c10638bea05725d5d0e32c7b501b4078a9a4c (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.8 2022-02-18T17:27:12,934 Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/8c/95/bb966fe3dbc3d84b5a97f30c0071cec3525475ca6d70eefd05de0486c66b/oxDNA_analysis_tools-1.0.9-py3-none-any.whl#sha256=847c4f63f46ed40e9700bba494875225922c7f12215b321aca687503ef05a3fd (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-18T17:27:12,935 Found link https://files.pythonhosted.org/packages/db/4e/4e19649594cfeb11512b376c6b6e64a6a8354dd68a422b8221d1e7562139/oxDNA_analysis_tools-1.0.9.tar.gz#sha256=3ef717b28f5f9d74e7eecc89a27fa98c07af761b4d9f75324b55bdb2cb450c2b (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.9 2022-02-18T17:27:12,936 Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/67/90/5a0d0aa16863c43c624f37ebb6dce78b9ae4d8f5bd3b3e60963382fbeb3a/oxDNA_analysis_tools-1.0.12-py3-none-any.whl#sha256=292e000a42eb4df44ab0fdc1896d7554a6839ec9adb8bb350dd7017116aec577 (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-18T17:27:12,938 Found link https://files.pythonhosted.org/packages/dd/ee/a25cb9abd84882306389318f74d19f3b40bcdaed4caaca0fbf223a228027/oxDNA_analysis_tools-1.0.12.tar.gz#sha256=c837756ed512c604b3356ea1375cc68472eaf28c2497e5449a0a72d60a30542f (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.12 2022-02-18T17:27:12,938 Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/c7/ac/0f3583f256e299ca951a027d0e8f5bfb0ec6b9be9481dd722b93d5b57a6e/oxDNA_analysis_tools-1.0.13-py3-none-any.whl#sha256=b8433f34d26d3dfc90b30096177f1d2ae3602d11bb7f32bb14e89f2c35da500f (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-18T17:27:12,940 Found link https://files.pythonhosted.org/packages/5e/f2/22a968ab6f1e5d2a7371584d97fba66952d1aa88c9cf0a05284d7415a6c9/oxDNA_analysis_tools-1.0.13.tar.gz#sha256=711b694c0dc981aff9b766d19b90e7d82110ebfa2757c2e32fdf35f59484071c (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.13 2022-02-18T17:27:12,940 Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/54/c0/eeea8580a5a1cc4498cc09ae0e4efbc71d804a3bbbaf43747195f5e51e5f/oxDNA_analysis_tools-1.0.14-py3-none-any.whl#sha256=1c18043c07d6f39256bbbe18823087400c726479a4e02582d1820a2504f97842 (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-18T17:27:12,942 Found link https://files.pythonhosted.org/packages/c5/4b/a8ea03fa1cb45bdb35dc793e20c2eeda48dc72d22ca81e23c873eb5996ad/oxDNA_analysis_tools-1.0.14.tar.gz#sha256=402c516c3256a87ddebe3c4a0032bc2d156568c1c8f3893e83dc0278654cdcf4 (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.14 2022-02-18T17:27:12,942 Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/d6/0c/e874c4b2d7bae0b686a4099e4ad43461247caafc6842f4ee6e2a6e7cec9d/oxDNA_analysis_tools-1.0.15-py3-none-any.whl#sha256=ec10af3bc08bc1b0b4f4336828b337a87c3a1ef7e8399d5a666b8b7c861de7dc (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-18T17:27:12,944 Found link https://files.pythonhosted.org/packages/d9/a3/6835d61dffe583926128b27553e73201c00fe3bd473d7b4abe5c903aa47f/oxDNA_analysis_tools-1.0.15.tar.gz#sha256=19e3c7c0899f801deab18a91dea223c91d144dc083afbc5629b061daf4e182f4 (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.15 2022-02-18T17:27:12,944 Skipping link: No binaries permitted for oxdna-analysis-tools: https://files.pythonhosted.org/packages/34/64/05bb22f7e3ab78416c6fa13ae0d68a1d26be9506f0aa0706403914c205ec/oxDNA_analysis_tools-1.0.16-py3-none-any.whl#sha256=8b8db88dc9ff55b73a3d7df0d3f3a7a29c51999f62e99e810fbabcb64c867a5c (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-18T17:27:12,946 Found link https://files.pythonhosted.org/packages/68/47/b343ae2fa1a60c4abd95c03d00f2af078e7f998513bbd2762b9dc5af5004/oxDNA_analysis_tools-1.0.16.tar.gz#sha256=b5fb8be2adeb61263ac37fd4ac382c9dd5bb7c21c9904b9b68003f6a8ead85d7 (from https://pypi.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6), version: 1.0.16 2022-02-18T17:27:12,947 Fetching project page and analyzing links: https://www.piwheels.org/simple/oxdna-analysis-tools/ 2022-02-18T17:27:12,947 Getting page https://www.piwheels.org/simple/oxdna-analysis-tools/ 2022-02-18T17:27:12,950 Found index url https://www.piwheels.org/simple 2022-02-18T17:27:13,192 Skipping link: No binaries permitted for oxdna-analysis-tools: https://www.piwheels.org/simple/oxdna-analysis-tools/oxDNA_analysis_tools-1.0.0-py3-none-any.whl#sha256=c32c816be37a1c53155d220930ed097d981c7cbf0fd9b6d794860b226d93faf8 (from https://www.piwheels.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-18T17:27:13,193 Skipping link: No binaries permitted for oxdna-analysis-tools: https://www.piwheels.org/simple/oxdna-analysis-tools/oxDNA_analysis_tools-1.0.1-py3-none-any.whl#sha256=0ca7f983b569de7181fe802c33f7d89e60f0dd8bc6bdccca11004157f8a15e11 (from https://www.piwheels.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-18T17:27:13,194 Skipping link: No binaries permitted for oxdna-analysis-tools: https://www.piwheels.org/simple/oxdna-analysis-tools/oxDNA_analysis_tools-1.0.12-py3-none-any.whl#sha256=30078964442db3a8fdee670295f4056cb4666ad6fdf1eaf2bc4a80a86d054b2b (from https://www.piwheels.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-18T17:27:13,194 Skipping link: No binaries permitted for oxdna-analysis-tools: https://www.piwheels.org/simple/oxdna-analysis-tools/oxDNA_analysis_tools-1.0.13-py3-none-any.whl#sha256=3a83f902a80b3bc811ce9be9c6dc4aaea3e915b03c673e0639d9c4ebf534dcef (from https://www.piwheels.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-18T17:27:13,195 Skipping link: No binaries permitted for oxdna-analysis-tools: https://www.piwheels.org/simple/oxdna-analysis-tools/oxDNA_analysis_tools-1.0.14-py3-none-any.whl#sha256=924b42a78a41f83ca1508c3466e93e1867a0dcadb2d3c960af0ae1f80106484b (from 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oxdna-analysis-tools: https://www.piwheels.org/simple/oxdna-analysis-tools/oxDNA_analysis_tools-1.0.6-py3-none-any.whl#sha256=3e3793c4a59dd64f86e2733487678785a4e2b86e46e2495f1fb14468b859e683 (from https://www.piwheels.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-18T17:27:13,199 Skipping link: No binaries permitted for oxdna-analysis-tools: https://www.piwheels.org/simple/oxdna-analysis-tools/oxDNA_analysis_tools-1.0.7-py3-none-any.whl#sha256=f98b328d052365f8a32ef8410ae09dea05cb705511e95eb0393c3f3642c30345 (from https://www.piwheels.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-18T17:27:13,199 Skipping link: No binaries permitted for oxdna-analysis-tools: https://www.piwheels.org/simple/oxdna-analysis-tools/oxDNA_analysis_tools-1.0.8-py3-none-any.whl#sha256=1283ef9ec8cf833ed1d09f9d032d3d445f65ffd94c9e96836bc093450f0657e8 (from https://www.piwheels.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-18T17:27:13,200 Skipping link: No binaries permitted for oxdna-analysis-tools: https://www.piwheels.org/simple/oxdna-analysis-tools/oxDNA_analysis_tools-1.0.9-py3-none-any.whl#sha256=b6d6e0388ab5ef2ddd3a2708a52c81f7bc4b52cf1e8ff7ea877f74738e2677ba (from https://www.piwheels.org/simple/oxdna-analysis-tools/) (requires-python:>=3.6) 2022-02-18T17:27:13,200 Skipping link: not a file: https://www.piwheels.org/simple/oxdna-analysis-tools/ 2022-02-18T17:27:13,201 Skipping link: not a file: https://pypi.org/simple/oxdna-analysis-tools/ 2022-02-18T17:27:13,240 Given no hashes to check 1 links for project 'oxdna-analysis-tools': discarding no candidates 2022-02-18T17:27:13,271 Collecting oxdna-analysis-tools==1.0.16 2022-02-18T17:27:13,276 Created temporary directory: /tmp/pip-unpack-opj67rmb 2022-02-18T17:27:13,719 Downloading oxDNA_analysis_tools-1.0.16.tar.gz (129 kB) 2022-02-18T17:27:14,071 Added oxdna-analysis-tools==1.0.16 from https://files.pythonhosted.org/packages/68/47/b343ae2fa1a60c4abd95c03d00f2af078e7f998513bbd2762b9dc5af5004/oxDNA_analysis_tools-1.0.16.tar.gz#sha256=b5fb8be2adeb61263ac37fd4ac382c9dd5bb7c21c9904b9b68003f6a8ead85d7 to build tracker '/tmp/pip-req-tracker-a8fc24t5' 2022-02-18T17:27:14,080 Created temporary directory: /tmp/pip-build-env-4ce53o30 2022-02-18T17:27:14,094 Created temporary directory: /tmp/pip-standalone-pip-yewvwhrw 2022-02-18T17:27:16,404 Installing build dependencies: started 2022-02-18T17:27:16,406 Running command pip subprocess to install build dependencies 2022-02-18T17:27:26,531 Using pip 22.0.3 from /tmp/pip-standalone-pip-yewvwhrw/__env_pip__.zip/pip (python 3.7) 2022-02-18T17:27:27,916 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-02-18T17:27:31,803 Collecting setuptools>=42 2022-02-18T17:27:32,045 Using cached https://www.piwheels.org/simple/setuptools/setuptools-60.9.3-py3-none-any.whl (1.1 MB) 2022-02-18T17:27:32,692 Collecting wheel 2022-02-18T17:27:32,730 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-02-18T17:27:37,349 Installing collected packages: wheel, setuptools 2022-02-18T17:27:37,619 Creating /tmp/pip-build-env-4ce53o30/overlay/bin 2022-02-18T17:27:37,623 changing mode of /tmp/pip-build-env-4ce53o30/overlay/bin/wheel to 755 2022-02-18T17:27:41,498 Successfully installed setuptools-60.9.3 wheel-0.37.1 2022-02-18T17:27:42,123 Installing build dependencies: finished with status 'done' 2022-02-18T17:27:42,150 Getting requirements to build wheel: started 2022-02-18T17:27:42,152 Running command Getting requirements to build wheel 2022-02-18T17:27:44,048 running egg_info 2022-02-18T17:27:44,116 writing manifest file 'src/oxDNA_analysis_tools.egg-info/SOURCES.txt' 2022-02-18T17:27:44,121 ################################################################################ 2022-02-18T17:27:44,122 All set up! All scripts in the package can now be run from the command line with 2022-02-18T17:27:44,122 oat 2022-02-18T17:27:44,123 importing functions in your own scripts can be done with 2022-02-18T17:27:44,124 from oxDNA_analysis_tools. import 2022-02-18T17:27:44,125 If you would like to enable autocomplete in Bash, either add 2022-02-18T17:27:44,126 source oat-completion.sh 2022-02-18T17:27:44,127 to your .bashrc or run 2022-02-18T17:27:44,128 cat oat-completion.sh >> ~/.bash_completion 2022-02-18T17:27:44,129 to make autocompletes available to all users. 2022-02-18T17:27:44,245 Getting requirements to build wheel: finished with status 'done' 2022-02-18T17:27:44,266 Created temporary directory: /tmp/pip-modern-metadata-s77zvt5_ 2022-02-18T17:27:44,272 Preparing metadata (pyproject.toml): started 2022-02-18T17:27:44,274 Running command Preparing metadata (pyproject.toml) 2022-02-18T17:27:46,072 running dist_info 2022-02-18T17:27:46,101 creating /tmp/pip-modern-metadata-s77zvt5_/oxDNA_analysis_tools.egg-info 2022-02-18T17:27:46,120 writing manifest file '/tmp/pip-modern-metadata-s77zvt5_/oxDNA_analysis_tools.egg-info/SOURCES.txt' 2022-02-18T17:27:46,159 writing manifest file '/tmp/pip-modern-metadata-s77zvt5_/oxDNA_analysis_tools.egg-info/SOURCES.txt' 2022-02-18T17:27:46,305 ################################################################################ 2022-02-18T17:27:46,306 All set up! All scripts in the package can now be run from the command line with 2022-02-18T17:27:46,307 oat 2022-02-18T17:27:46,308 importing functions in your own scripts can be done with 2022-02-18T17:27:46,309 from oxDNA_analysis_tools. import 2022-02-18T17:27:46,310 If you would like to enable autocomplete in Bash, either add 2022-02-18T17:27:46,310 source oat-completion.sh 2022-02-18T17:27:46,311 to your .bashrc or run 2022-02-18T17:27:46,312 cat oat-completion.sh >> ~/.bash_completion 2022-02-18T17:27:46,313 to make autocompletes available to all users. 2022-02-18T17:27:46,437 Preparing metadata (pyproject.toml): finished with status 'done' 2022-02-18T17:27:46,453 Source in /tmp/pip-wheel-k2n34i1c/oxdna-analysis-tools_090829e2a8824c0ba4bf457d686cb2eb has version 1.0.16, which satisfies requirement oxdna-analysis-tools==1.0.16 from https://files.pythonhosted.org/packages/68/47/b343ae2fa1a60c4abd95c03d00f2af078e7f998513bbd2762b9dc5af5004/oxDNA_analysis_tools-1.0.16.tar.gz#sha256=b5fb8be2adeb61263ac37fd4ac382c9dd5bb7c21c9904b9b68003f6a8ead85d7 2022-02-18T17:27:46,455 Removed oxdna-analysis-tools==1.0.16 from https://files.pythonhosted.org/packages/68/47/b343ae2fa1a60c4abd95c03d00f2af078e7f998513bbd2762b9dc5af5004/oxDNA_analysis_tools-1.0.16.tar.gz#sha256=b5fb8be2adeb61263ac37fd4ac382c9dd5bb7c21c9904b9b68003f6a8ead85d7 from build tracker '/tmp/pip-req-tracker-a8fc24t5' 2022-02-18T17:27:46,469 Created temporary directory: /tmp/pip-unpack-38fv8t1t 2022-02-18T17:27:46,470 Building wheels for collected packages: oxdna-analysis-tools 2022-02-18T17:27:46,480 Created temporary directory: /tmp/pip-wheel-pyyzeqx3 2022-02-18T17:27:46,481 Destination directory: /tmp/pip-wheel-pyyzeqx3 2022-02-18T17:27:46,486 Building wheel for oxdna-analysis-tools (pyproject.toml): started 2022-02-18T17:27:46,488 Running command Building wheel for oxdna-analysis-tools (pyproject.toml) 2022-02-18T17:27:48,313 running bdist_wheel 2022-02-18T17:27:48,729 running build 2022-02-18T17:27:48,730 running build_py 2022-02-18T17:27:48,741 creating build 2022-02-18T17:27:48,741 creating build/lib 2022-02-18T17:27:48,742 creating build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,744 copying src/oxDNA_analysis_tools/bond_analysis.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,748 copying src/oxDNA_analysis_tools/oxDNA_PDB.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,752 copying src/oxDNA_analysis_tools/db_to_force.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,755 copying src/oxDNA_analysis_tools/subset_trajectory.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,759 copying src/oxDNA_analysis_tools/pca_experimental.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,762 copying src/oxDNA_analysis_tools/generate_force.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,766 copying src/oxDNA_analysis_tools/duplex_angle_plotter.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,769 copying src/oxDNA_analysis_tools/entry.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,772 copying src/oxDNA_analysis_tools/align_trajectory.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,776 copying src/oxDNA_analysis_tools/minify.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,779 copying src/oxDNA_analysis_tools/output_bonds.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,782 copying src/oxDNA_analysis_tools/p_align.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,786 copying src/oxDNA_analysis_tools/multidimensional_scaling_mean.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,790 copying src/oxDNA_analysis_tools/clustering.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,794 copying src/oxDNA_analysis_tools/mean2dat.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,798 copying src/oxDNA_analysis_tools/eRMSD.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,801 copying src/oxDNA_analysis_tools/index.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,804 copying src/oxDNA_analysis_tools/plot_energy.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,808 copying src/oxDNA_analysis_tools/forces2pairs.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,811 copying src/oxDNA_analysis_tools/contact_map.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,814 copying src/oxDNA_analysis_tools/compute_deviations.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,818 copying src/oxDNA_analysis_tools/centroid.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,822 copying src/oxDNA_analysis_tools/anm_parametrize.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,825 copying src/oxDNA_analysis_tools/distance.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,829 copying src/oxDNA_analysis_tools/__init__.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,832 copying src/oxDNA_analysis_tools/superimpose.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,835 copying src/oxDNA_analysis_tools/config.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,839 copying src/oxDNA_analysis_tools/compute_mean.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,843 copying src/oxDNA_analysis_tools/pca.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,847 copying src/oxDNA_analysis_tools/duplex_angle_finder.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,851 copying src/oxDNA_analysis_tools/backbone_flexibility.py -> build/lib/oxDNA_analysis_tools 2022-02-18T17:27:48,855 creating build/lib/oxDNA_analysis_tools/external_force_utils 2022-02-18T17:27:48,857 copying src/oxDNA_analysis_tools/external_force_utils/exclude_force.py -> build/lib/oxDNA_analysis_tools/external_force_utils 2022-02-18T17:27:48,860 copying src/oxDNA_analysis_tools/external_force_utils/forces.py -> build/lib/oxDNA_analysis_tools/external_force_utils 2022-02-18T17:27:48,863 copying src/oxDNA_analysis_tools/external_force_utils/__init__.py -> build/lib/oxDNA_analysis_tools/external_force_utils 2022-02-18T17:27:48,867 copying src/oxDNA_analysis_tools/external_force_utils/force_reader.py -> build/lib/oxDNA_analysis_tools/external_force_utils 2022-02-18T17:27:48,872 creating build/lib/oxDNA_analysis_tools/UTILS 2022-02-18T17:27:48,873 copying src/oxDNA_analysis_tools/UTILS/parallelize_lorenzo_multifile.py -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-18T17:27:48,877 copying src/oxDNA_analysis_tools/UTILS/parallelize_erik_onefile.py -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-18T17:27:48,880 copying src/oxDNA_analysis_tools/UTILS/base.py -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-18T17:27:48,888 copying src/oxDNA_analysis_tools/UTILS/protein_to_pdb.py -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-18T17:27:48,891 copying src/oxDNA_analysis_tools/UTILS/parallelize_erik_multifile.py -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-18T17:27:48,895 copying src/oxDNA_analysis_tools/UTILS/geom.py -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-18T17:27:48,899 copying src/oxDNA_analysis_tools/UTILS/parallelize_lorenzo_onefile.py -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-18T17:27:48,902 copying src/oxDNA_analysis_tools/UTILS/pdb.py -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-18T17:27:48,906 copying src/oxDNA_analysis_tools/UTILS/all_vectors.py -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-18T17:27:48,909 copying src/oxDNA_analysis_tools/UTILS/base_array.py -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-18T17:27:48,913 copying src/oxDNA_analysis_tools/UTILS/micha_reader.py -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-18T17:27:48,917 copying src/oxDNA_analysis_tools/UTILS/__init__.py -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-18T17:27:48,919 copying src/oxDNA_analysis_tools/UTILS/readers.py -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-18T17:27:48,923 copying src/oxDNA_analysis_tools/UTILS/utils.py -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-18T17:27:48,925 running egg_info 2022-02-18T17:27:48,997 writing manifest file 'src/oxDNA_analysis_tools.egg-info/SOURCES.txt' 2022-02-18T17:27:49,002 copying src/oxDNA_analysis_tools/UTILS/dd12_na.pdb -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-18T17:27:49,009 copying src/oxDNA_analysis_tools/UTILS/model.h -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-18T17:27:49,013 copying src/oxDNA_analysis_tools/UTILS/rna_model.h -> build/lib/oxDNA_analysis_tools/UTILS 2022-02-18T17:27:49,039 running install 2022-02-18T17:27:49,100 running install_lib 2022-02-18T17:27:49,108 creating build/bdist.linux-armv7l 2022-02-18T17:27:49,108 creating build/bdist.linux-armv7l/wheel 2022-02-18T17:27:49,112 creating build/bdist.linux-armv7l/wheel/oxDNA_analysis_tools 2022-02-18T17:27:49,126 creating build/bdist.linux-armv7l/wheel/oxDNA_analysis_tools/external_force_utils 2022-02-18T17:27:49,233 creating build/bdist.linux-armv7l/wheel/oxDNA_analysis_tools/UTILS 2022-02-18T17:27:49,321 running install_egg_info 2022-02-18T17:27:49,336 Copying src/oxDNA_analysis_tools.egg-info to build/bdist.linux-armv7l/wheel/oxDNA_analysis_tools-1.0.16-py3.7.egg-info 2022-02-18T17:27:49,361 running install_scripts 2022-02-18T17:27:49,826 ################################################################################ 2022-02-18T17:27:49,826 All set up! All scripts in the package can now be run from the command line with 2022-02-18T17:27:49,827 oat 2022-02-18T17:27:49,828 importing functions in your own scripts can be done with 2022-02-18T17:27:49,829 from oxDNA_analysis_tools. import 2022-02-18T17:27:49,830 If you would like to enable autocomplete in Bash, either add 2022-02-18T17:27:49,831 source oat-completion.sh 2022-02-18T17:27:49,832 to your .bashrc or run 2022-02-18T17:27:49,833 cat oat-completion.sh >> ~/.bash_completion 2022-02-18T17:27:49,834 to make autocompletes available to all users. 2022-02-18T17:27:49,992 Building wheel for oxdna-analysis-tools (pyproject.toml): finished with status 'done' 2022-02-18T17:27:50,012 Created wheel for oxdna-analysis-tools: filename=oxDNA_analysis_tools-1.0.16-py3-none-any.whl size=156187 sha256=2298f7e6998b9f282e2c9f54a7eb6246019317486620c5d7d05137526545b85f 2022-02-18T17:27:50,015 Stored in directory: /tmp/pip-ephem-wheel-cache-9m3j6ujt/wheels/35/4e/96/683f36ac4be1cd73b2933bf121b6691fc0c88c072895dcfd93 2022-02-18T17:27:50,045 Successfully built oxdna-analysis-tools 2022-02-18T17:27:50,064 Removed build tracker: '/tmp/pip-req-tracker-a8fc24t5'