2022-02-25T14:48:37,017 Created temporary directory: /tmp/pip-ephem-wheel-cache-5q9ti2lr 2022-02-25T14:48:37,023 Created temporary directory: /tmp/pip-req-tracker-j1me1xhc 2022-02-25T14:48:37,023 Initialized build tracking at /tmp/pip-req-tracker-j1me1xhc 2022-02-25T14:48:37,024 Created build tracker: /tmp/pip-req-tracker-j1me1xhc 2022-02-25T14:48:37,024 Entered build tracker: /tmp/pip-req-tracker-j1me1xhc 2022-02-25T14:48:37,025 Created temporary directory: /tmp/pip-wheel-5xx6t9f7 2022-02-25T14:48:37,098 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-02-25T14:48:37,107 2 location(s) to search for versions of blobtoolkit: 2022-02-25T14:48:37,107 * https://pypi.org/simple/blobtoolkit/ 2022-02-25T14:48:37,107 * https://www.piwheels.org/simple/blobtoolkit/ 2022-02-25T14:48:37,108 Fetching project page and analyzing links: https://pypi.org/simple/blobtoolkit/ 2022-02-25T14:48:37,109 Getting page https://pypi.org/simple/blobtoolkit/ 2022-02-25T14:48:37,112 Found index url https://pypi.org/simple 2022-02-25T14:48:37,229 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/1f/46/fdc40011246f90aad8dd138024819f7370ebfcd9afbb117b8a980cc6d5e1/blobtoolkit-3.0.0-py3-none-macosx_10_9_x86_64.whl#sha256=6d384eb0c61d2d1b32ce006431fe26bc6d85b60f2ff3a1556435b9880603e3e5 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-02-25T14:48:37,230 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/f0/21/e7c86ed90423d80312bcde9e2abc1271d962e1b62c14ebd24e357db35b5f/blobtoolkit-3.0.0-py3-none-macosx_11_0_x86_64.whl#sha256=00b334b094c108be04b4f2b5b6ec89d8ef4a309d67d1b5fb2c8142af4b5693b4 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-02-25T14:48:37,231 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/52/ba/d167b2fbe829a5ddefbe2d0b37afb545e9abb78ca135cb1c270e1d86c421/blobtoolkit-3.0.0-py3-none-manylinux2014_x86_64.whl#sha256=3320d62bc24751fa3f61a5f6f635cca689054603e83c28e679318f382c0a79cd (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-02-25T14:48:37,231 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/e0/60/c5ae47d2277eacba8cdd4c688d198615c50ba1eca8dcc53c1c077bc357b8/blobtoolkit-3.0.0-py3-none-win_amd64.whl#sha256=5260dd912a30e2b6f5550542b5a0c955eca4f1dc1ad50b732a2091b4dd174815 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-02-25T14:48:37,233 Found link https://files.pythonhosted.org/packages/bd/3b/c4debdcadb84982350491350d212cbe0c0c0056f252b1088212ccec55bdf/blobtoolkit-3.0.0.tar.gz#sha256=861dfdfdef24b6d7b12dfd57a3bcfb5802d7e1101002f5055f25102549786695 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4), version: 3.0.0 2022-02-25T14:48:37,234 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/76/33/d2756a9cc32a3ab88bbbf531ab7e46f49450ca62a8fc25c512f2d1a763c8/blobtoolkit-3.0.5-py3-none-macosx_10_9_x86_64.whl#sha256=def3c2b4609a15551d557bd1e2abd768c460e78a398d9a6695305ac0fe2eb441 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-02-25T14:48:37,235 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/37/ff/6282568e42b96628af7308880a619d1575df495eede292cba11c497ab365/blobtoolkit-3.0.5-py3-none-macosx_11_0_x86_64.whl#sha256=1c367203e0e027d5b49183025b28939da885dac3aaa34431abb8254a95f091fb (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-02-25T14:48:37,235 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/da/e5/fdac6cdb7d36a88e40a83db86f370d4401c3ee5acbf3a555c12732689216/blobtoolkit-3.0.5-py3-none-manylinux2014_x86_64.whl#sha256=d373a8c17aabdea7ee4fe99206475c7b86e70d5ca164bff25bc48d629fff0622 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-02-25T14:48:37,236 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/dc/c8/5f576d3c4a98fad60173bc6f2fbf2e448577dd87ceb79ab0dc2dd4445913/blobtoolkit-3.0.5-py3-none-win_amd64.whl#sha256=a81e9c5e47272316d06b203309bc835fbaff707884e4ba3e639ffbd16c1380a4 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-02-25T14:48:37,237 Found link https://files.pythonhosted.org/packages/1b/27/11296f2e90f2df30c5bfc4cedab387538d562d8bed9a59ff4ed1a879b4f2/blobtoolkit-3.0.5.tar.gz#sha256=82bd4ce8eed63e44c175dc2cdc01e19b51099c705a2f5e7ff60ab491d6a45e38 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4), version: 3.0.5 2022-02-25T14:48:37,238 Fetching project page and analyzing links: https://www.piwheels.org/simple/blobtoolkit/ 2022-02-25T14:48:37,239 Getting page https://www.piwheels.org/simple/blobtoolkit/ 2022-02-25T14:48:37,241 Found index url https://www.piwheels.org/simple 2022-02-25T14:48:37,456 Skipping link: No binaries permitted for blobtoolkit: https://www.piwheels.org/simple/blobtoolkit/blobtoolkit-3.0.0-py3-none-any.whl#sha256=cfbf042eeb760126c702f1dc846c505f5c5ab2bf65b1aee5d0f3a4c494dfac97 (from https://www.piwheels.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-02-25T14:48:37,456 Skipping link: not a file: https://www.piwheels.org/simple/blobtoolkit/ 2022-02-25T14:48:37,457 Skipping link: not a file: https://pypi.org/simple/blobtoolkit/ 2022-02-25T14:48:37,491 Given no hashes to check 1 links for project 'blobtoolkit': discarding no candidates 2022-02-25T14:48:37,522 Collecting blobtoolkit==3.0.5 2022-02-25T14:48:37,526 Created temporary directory: /tmp/pip-unpack-eae6ygt3 2022-02-25T14:48:39,517 Downloading blobtoolkit-3.0.5.tar.gz (49.9 MB) 2022-02-25T14:49:01,319 Added blobtoolkit==3.0.5 from https://files.pythonhosted.org/packages/1b/27/11296f2e90f2df30c5bfc4cedab387538d562d8bed9a59ff4ed1a879b4f2/blobtoolkit-3.0.5.tar.gz#sha256=82bd4ce8eed63e44c175dc2cdc01e19b51099c705a2f5e7ff60ab491d6a45e38 to build tracker '/tmp/pip-req-tracker-j1me1xhc' 2022-02-25T14:49:01,330 Created temporary directory: /tmp/pip-build-env-zhid84xv 2022-02-25T14:49:01,344 Created temporary directory: /tmp/pip-standalone-pip-b218t2pb 2022-02-25T14:49:03,645 Installing build dependencies: started 2022-02-25T14:49:03,647 Running command pip subprocess to install build dependencies 2022-02-25T14:49:13,663 Using pip 22.0.3 from /tmp/pip-standalone-pip-b218t2pb/__env_pip__.zip/pip (python 3.7) 2022-02-25T14:49:15,002 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-02-25T14:49:18,890 Collecting setuptools>=42 2022-02-25T14:49:19,123 Using cached https://www.piwheels.org/simple/setuptools/setuptools-60.9.3-py3-none-any.whl (1.1 MB) 2022-02-25T14:49:19,763 Collecting wheel 2022-02-25T14:49:19,797 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-02-25T14:49:24,043 Installing collected packages: wheel, setuptools 2022-02-25T14:49:24,317 Creating /tmp/pip-build-env-zhid84xv/overlay/bin 2022-02-25T14:49:24,322 changing mode of /tmp/pip-build-env-zhid84xv/overlay/bin/wheel to 755 2022-02-25T14:49:28,243 Successfully installed setuptools-60.9.3 wheel-0.37.1 2022-02-25T14:49:28,864 Installing build dependencies: finished with status 'done' 2022-02-25T14:49:28,905 Getting requirements to build wheel: started 2022-02-25T14:49:28,907 Running command Getting requirements to build wheel 2022-02-25T14:49:30,980 running egg_info 2022-02-25T14:49:31,072 warning: no previously-included files found matching '.gitignore' 2022-02-25T14:49:31,073 warning: no previously-included files found matching '.coverage' 2022-02-25T14:49:31,075 warning: no previously-included files found matching '.travis.yml' 2022-02-25T14:49:31,076 no previously-included directories found matching '.cache' 2022-02-25T14:49:31,078 no previously-included directories found matching '.git' 2022-02-25T14:49:31,079 no previously-included directories found matching 'build' 2022-02-25T14:49:31,080 no previously-included directories found matching 'dist' 2022-02-25T14:49:31,082 warning: no previously-included files matching '*' found under directory '*.egg-info' 2022-02-25T14:49:31,084 warning: no previously-included files matching '*' found under directory 'tests' 2022-02-25T14:49:31,086 warning: no previously-included files matching '*' found under directory 'conda-recipe' 2022-02-25T14:49:31,087 warning: no previously-included files matching '*' found under directory 'ci' 2022-02-25T14:49:31,088 warning: no previously-included files matching '*' found under directory 'tests' 2022-02-25T14:49:31,273 writing manifest file 'src/blobtoolkit.egg-info/SOURCES.txt' 2022-02-25T14:49:31,403 Getting requirements to build wheel: finished with status 'done' 2022-02-25T14:49:31,423 Created temporary directory: /tmp/pip-modern-metadata-1s83vof6 2022-02-25T14:49:31,429 Preparing metadata (pyproject.toml): started 2022-02-25T14:49:31,431 Running command Preparing metadata (pyproject.toml) 2022-02-25T14:49:33,394 running dist_info 2022-02-25T14:49:33,424 creating /tmp/pip-modern-metadata-1s83vof6/blobtoolkit.egg-info 2022-02-25T14:49:33,442 writing manifest file '/tmp/pip-modern-metadata-1s83vof6/blobtoolkit.egg-info/SOURCES.txt' 2022-02-25T14:49:33,472 warning: no previously-included files found matching '.gitignore' 2022-02-25T14:49:33,473 warning: no previously-included files found matching '.coverage' 2022-02-25T14:49:33,474 warning: no previously-included files found matching '.travis.yml' 2022-02-25T14:49:33,475 no previously-included directories found matching '.cache' 2022-02-25T14:49:33,476 no previously-included directories found matching '.git' 2022-02-25T14:49:33,477 no previously-included directories found matching 'build' 2022-02-25T14:49:33,478 no previously-included directories found matching 'dist' 2022-02-25T14:49:33,479 warning: no previously-included files matching '*' found under directory '*.egg-info' 2022-02-25T14:49:33,480 warning: no previously-included files matching '*' found under directory 'tests' 2022-02-25T14:49:33,482 warning: no previously-included files matching '*' found under directory 'conda-recipe' 2022-02-25T14:49:33,483 warning: no previously-included files matching '*' found under directory 'ci' 2022-02-25T14:49:33,483 warning: no previously-included files matching '*' found under directory 'tests' 2022-02-25T14:49:33,652 writing manifest file '/tmp/pip-modern-metadata-1s83vof6/blobtoolkit.egg-info/SOURCES.txt' 2022-02-25T14:49:33,996 Preparing metadata (pyproject.toml): finished with status 'done' 2022-02-25T14:49:34,011 Source in /tmp/pip-wheel-5xx6t9f7/blobtoolkit_298d7b70bba842e2a64eb9c14c0e0828 has version 3.0.5, which satisfies requirement blobtoolkit==3.0.5 from https://files.pythonhosted.org/packages/1b/27/11296f2e90f2df30c5bfc4cedab387538d562d8bed9a59ff4ed1a879b4f2/blobtoolkit-3.0.5.tar.gz#sha256=82bd4ce8eed63e44c175dc2cdc01e19b51099c705a2f5e7ff60ab491d6a45e38 2022-02-25T14:49:34,013 Removed blobtoolkit==3.0.5 from https://files.pythonhosted.org/packages/1b/27/11296f2e90f2df30c5bfc4cedab387538d562d8bed9a59ff4ed1a879b4f2/blobtoolkit-3.0.5.tar.gz#sha256=82bd4ce8eed63e44c175dc2cdc01e19b51099c705a2f5e7ff60ab491d6a45e38 from build tracker '/tmp/pip-req-tracker-j1me1xhc' 2022-02-25T14:49:34,030 Created temporary directory: /tmp/pip-unpack-4kuvsipx 2022-02-25T14:49:34,031 Building wheels for collected packages: blobtoolkit 2022-02-25T14:49:34,042 Created temporary directory: /tmp/pip-wheel-3ujr8uqs 2022-02-25T14:49:34,042 Destination directory: /tmp/pip-wheel-3ujr8uqs 2022-02-25T14:49:34,048 Building wheel for blobtoolkit (pyproject.toml): started 2022-02-25T14:49:34,050 Running command Building wheel for blobtoolkit (pyproject.toml) 2022-02-25T14:49:36,123 running bdist_wheel 2022-02-25T14:49:36,548 running build 2022-02-25T14:49:36,549 running build_py 2022-02-25T14:49:36,557 creating build 2022-02-25T14:49:36,558 creating build/lib 2022-02-25T14:49:36,559 creating build/lib/blobtools 2022-02-25T14:49:36,561 copying src/blobtools/__main__.py -> build/lib/blobtools 2022-02-25T14:49:36,565 copying src/blobtools/blobtools.py -> build/lib/blobtools 2022-02-25T14:49:36,568 copying src/blobtools/__init__.py -> build/lib/blobtools 2022-02-25T14:49:36,573 creating build/lib/btk_pipeline 2022-02-25T14:49:36,574 copying src/btk_pipeline/__main__.py -> build/lib/btk_pipeline 2022-02-25T14:49:36,577 copying src/btk_pipeline/__init__.py -> build/lib/btk_pipeline 2022-02-25T14:49:36,580 copying src/btk_pipeline/btk_pipeline.py -> build/lib/btk_pipeline 2022-02-25T14:49:36,585 creating build/lib/btk 2022-02-25T14:49:36,587 copying src/btk/__main__.py -> build/lib/btk 2022-02-25T14:49:36,590 copying src/btk/__init__.py -> build/lib/btk 2022-02-25T14:49:36,593 copying src/btk/btk.py -> build/lib/btk 2022-02-25T14:49:36,600 creating build/lib/blobtools/lib 2022-02-25T14:49:36,602 copying src/blobtools/lib/busco.py -> build/lib/blobtools/lib 2022-02-25T14:49:36,606 copying src/blobtools/lib/cov.py -> build/lib/blobtools/lib 2022-02-25T14:49:36,611 copying src/blobtools/lib/filter.py -> build/lib/blobtools/lib 2022-02-25T14:49:36,615 copying src/blobtools/lib/run_external.py -> build/lib/blobtools/lib 2022-02-25T14:49:36,619 copying src/blobtools/lib/key.py -> build/lib/blobtools/lib 2022-02-25T14:49:36,622 copying src/blobtools/lib/view.py -> build/lib/blobtools/lib 2022-02-25T14:49:36,627 copying src/blobtools/lib/fetch.py -> build/lib/blobtools/lib 2022-02-25T14:49:36,630 copying src/blobtools/lib/field.py -> build/lib/blobtools/lib 2022-02-25T14:49:36,634 copying src/blobtools/lib/hits.py -> build/lib/blobtools/lib 2022-02-25T14:49:36,640 copying src/blobtools/lib/synonyms.py -> build/lib/blobtools/lib 2022-02-25T14:49:36,643 copying src/blobtools/lib/calc.py -> build/lib/blobtools/lib 2022-02-25T14:49:36,646 copying src/blobtools/lib/add.py -> build/lib/blobtools/lib 2022-02-25T14:49:36,650 copying src/blobtools/lib/__init__.py -> build/lib/blobtools/lib 2022-02-25T14:49:36,653 copying src/blobtools/lib/remove.py -> build/lib/blobtools/lib 2022-02-25T14:49:36,657 copying src/blobtools/lib/blob_db.py -> build/lib/blobtools/lib 2022-02-25T14:49:36,661 copying src/blobtools/lib/trnascan.py -> build/lib/blobtools/lib 2022-02-25T14:49:36,664 copying src/blobtools/lib/dataset.py -> build/lib/blobtools/lib 2022-02-25T14:49:36,669 copying src/blobtools/lib/version.py -> build/lib/blobtools/lib 2022-02-25T14:49:36,672 copying src/blobtools/lib/taxid.py -> build/lib/blobtools/lib 2022-02-25T14:49:36,675 copying src/blobtools/lib/fasta.py -> build/lib/blobtools/lib 2022-02-25T14:49:36,679 copying src/blobtools/lib/host.py -> build/lib/blobtools/lib 2022-02-25T14:49:36,683 copying src/blobtools/lib/taxdump.py -> build/lib/blobtools/lib 2022-02-25T14:49:36,686 copying src/blobtools/lib/text.py -> build/lib/blobtools/lib 2022-02-25T14:49:36,690 copying src/blobtools/lib/link.py -> build/lib/blobtools/lib 2022-02-25T14:49:36,694 copying src/blobtools/lib/bed.py -> build/lib/blobtools/lib 2022-02-25T14:49:36,698 copying src/blobtools/lib/validate.py -> build/lib/blobtools/lib 2022-02-25T14:49:36,703 copying src/blobtools/lib/file_io.py -> build/lib/blobtools/lib 2022-02-25T14:49:36,709 creating build/lib/btk_pipeline/lib 2022-02-25T14:49:36,710 copying src/btk_pipeline/lib/extract_busco_genes.py -> build/lib/btk_pipeline/lib 2022-02-25T14:49:36,713 copying src/btk_pipeline/lib/unchunk_blast.py -> build/lib/btk_pipeline/lib 2022-02-25T14:49:36,717 copying src/btk_pipeline/lib/transfer_completed.py -> build/lib/btk_pipeline/lib 2022-02-25T14:49:36,720 copying src/btk_pipeline/lib/chunk_fasta.py -> build/lib/btk_pipeline/lib 2022-02-25T14:49:36,724 copying src/btk_pipeline/lib/count_busco_genes.py -> build/lib/btk_pipeline/lib 2022-02-25T14:49:36,727 copying src/btk_pipeline/lib/__init__.py -> build/lib/btk_pipeline/lib 2022-02-25T14:49:36,730 copying src/btk_pipeline/lib/track_bioproject_accessions.py -> build/lib/btk_pipeline/lib 2022-02-25T14:49:36,733 copying src/btk_pipeline/lib/generate_config.py -> build/lib/btk_pipeline/lib 2022-02-25T14:49:36,737 copying src/btk_pipeline/lib/data.py -> build/lib/btk_pipeline/lib 2022-02-25T14:49:36,741 copying src/btk_pipeline/lib/window_stats.py -> build/lib/btk_pipeline/lib 2022-02-25T14:49:36,744 copying src/btk_pipeline/lib/functions.py -> build/lib/btk_pipeline/lib 2022-02-25T14:49:36,748 copying src/btk_pipeline/lib/version.py -> build/lib/btk_pipeline/lib 2022-02-25T14:49:36,751 copying src/btk_pipeline/lib/run.py -> build/lib/btk_pipeline/lib 2022-02-25T14:49:36,755 copying src/btk_pipeline/lib/generate_static_images.py -> build/lib/btk_pipeline/lib 2022-02-25T14:49:36,758 copying src/btk_pipeline/lib/add_summary_to_metadata.py -> build/lib/btk_pipeline/lib 2022-02-25T14:49:36,762 running egg_info 2022-02-25T14:49:36,831 warning: no previously-included files found matching '.gitignore' 2022-02-25T14:49:36,832 warning: no previously-included files found matching '.coverage' 2022-02-25T14:49:36,833 warning: no previously-included files found matching '.travis.yml' 2022-02-25T14:49:36,835 no previously-included directories found matching '.cache' 2022-02-25T14:49:36,836 no previously-included directories found matching '.git' 2022-02-25T14:49:36,837 no previously-included directories found matching 'build' 2022-02-25T14:49:36,839 no previously-included directories found matching 'dist' 2022-02-25T14:49:36,840 warning: no previously-included files matching '*' found under directory '*.egg-info' 2022-02-25T14:49:36,842 warning: no previously-included files matching '*' found under directory 'tests' 2022-02-25T14:49:36,844 warning: no previously-included files matching '*' found under directory 'conda-recipe' 2022-02-25T14:49:36,845 warning: no previously-included files matching '*' found under directory 'ci' 2022-02-25T14:49:36,846 warning: no previously-included files matching '*' found under directory 'tests' 2022-02-25T14:49:37,021 writing manifest file 'src/blobtoolkit.egg-info/SOURCES.txt' 2022-02-25T14:49:37,055 creating build/lib/blobtools/bin 2022-02-25T14:49:37,057 copying src/blobtools/bin/blobtoolkit-api-linux -> build/lib/blobtools/bin 2022-02-25T14:49:39,082 copying src/blobtools/bin/blobtoolkit-viewer-linux -> build/lib/blobtools/bin 2022-02-25T14:49:42,224 creating build/lib/blobtools/example 2022-02-25T14:49:42,225 creating build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,228 copying src/blobtools/example/FXWY01/ERR1656467_cov.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,233 copying src/blobtools/example/FXWY01/ERR1656467_read_cov.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,238 copying src/blobtools/example/FXWY01/bestsumorder_class.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,243 copying src/blobtools/example/FXWY01/bestsumorder_class_cindex.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,248 copying src/blobtools/example/FXWY01/bestsumorder_class_positions.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,277 copying src/blobtools/example/FXWY01/bestsumorder_class_score.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,281 copying src/blobtools/example/FXWY01/bestsumorder_family.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,285 copying src/blobtools/example/FXWY01/bestsumorder_family_cindex.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,289 copying src/blobtools/example/FXWY01/bestsumorder_family_positions.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,309 copying src/blobtools/example/FXWY01/bestsumorder_family_score.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,313 copying src/blobtools/example/FXWY01/bestsumorder_genus.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,316 copying src/blobtools/example/FXWY01/bestsumorder_genus_cindex.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,320 copying src/blobtools/example/FXWY01/bestsumorder_genus_positions.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,339 copying src/blobtools/example/FXWY01/bestsumorder_genus_score.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,342 copying src/blobtools/example/FXWY01/bestsumorder_kingdom.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,346 copying src/blobtools/example/FXWY01/bestsumorder_kingdom_cindex.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,350 copying src/blobtools/example/FXWY01/bestsumorder_kingdom_positions.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,369 copying src/blobtools/example/FXWY01/bestsumorder_kingdom_score.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,372 copying src/blobtools/example/FXWY01/bestsumorder_order.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,376 copying src/blobtools/example/FXWY01/bestsumorder_order_cindex.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,380 copying src/blobtools/example/FXWY01/bestsumorder_order_positions.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,398 copying src/blobtools/example/FXWY01/bestsumorder_order_score.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,401 copying src/blobtools/example/FXWY01/bestsumorder_phylum.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,405 copying src/blobtools/example/FXWY01/bestsumorder_phylum_cindex.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,409 copying src/blobtools/example/FXWY01/bestsumorder_phylum_positions.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,431 copying src/blobtools/example/FXWY01/bestsumorder_phylum_score.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,435 copying src/blobtools/example/FXWY01/bestsumorder_positions.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,455 copying src/blobtools/example/FXWY01/bestsumorder_species.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,459 copying src/blobtools/example/FXWY01/bestsumorder_species_cindex.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,463 copying src/blobtools/example/FXWY01/bestsumorder_species_positions.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,484 copying src/blobtools/example/FXWY01/bestsumorder_species_score.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,488 copying src/blobtools/example/FXWY01/bestsumorder_superkingdom.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,492 copying src/blobtools/example/FXWY01/bestsumorder_superkingdom_cindex.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,496 copying src/blobtools/example/FXWY01/bestsumorder_superkingdom_positions.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,516 copying src/blobtools/example/FXWY01/bestsumorder_superkingdom_score.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,520 copying src/blobtools/example/FXWY01/eukaryota_odb9_busco.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,525 copying src/blobtools/example/FXWY01/gc.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,530 copying src/blobtools/example/FXWY01/identifiers.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,534 copying src/blobtools/example/FXWY01/length.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,539 copying src/blobtools/example/FXWY01/meta.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,544 copying src/blobtools/example/FXWY01/metazoa_odb9_busco.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,550 copying src/blobtools/example/FXWY01/ncount.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,555 copying src/blobtools/example/FXWY01/nematoda_odb9_busco.json -> build/lib/blobtools/example/FXWY01 2022-02-25T14:49:42,561 creating build/lib/blobtools/schema 2022-02-25T14:49:42,563 copying src/blobtools/schema/basic.schema.json -> build/lib/blobtools/schema 2022-02-25T14:49:42,568 copying src/blobtools/schema/meta.schema.json -> build/lib/blobtools/schema 2022-02-25T14:49:42,572 creating build/lib/blobtools/schema/subschemas 2022-02-25T14:49:42,574 copying src/blobtools/schema/subschemas/array.data.schema.json -> build/lib/blobtools/schema/subschemas 2022-02-25T14:49:42,579 copying src/blobtools/schema/subschemas/array.meta.schema.json -> build/lib/blobtools/schema/subschemas 2022-02-25T14:49:42,583 copying src/blobtools/schema/subschemas/assembly.basic.schema.json -> build/lib/blobtools/schema/subschemas 2022-02-25T14:49:42,588 copying src/blobtools/schema/subschemas/assembly.schema.json -> build/lib/blobtools/schema/subschemas 2022-02-25T14:49:42,592 copying src/blobtools/schema/subschemas/category.data.schema.json -> build/lib/blobtools/schema/subschemas 2022-02-25T14:49:42,597 copying src/blobtools/schema/subschemas/category.meta.schema.json -> build/lib/blobtools/schema/subschemas 2022-02-25T14:49:42,601 copying src/blobtools/schema/subschemas/fields.schema.json -> build/lib/blobtools/schema/subschemas 2022-02-25T14:49:42,605 copying src/blobtools/schema/subschemas/identifier.data.schema.json -> build/lib/blobtools/schema/subschemas 2022-02-25T14:49:42,609 copying src/blobtools/schema/subschemas/identifier.meta.schema.json -> build/lib/blobtools/schema/subschemas 2022-02-25T14:49:42,612 copying src/blobtools/schema/subschemas/multiarray.data.schema.json -> build/lib/blobtools/schema/subschemas 2022-02-25T14:49:42,616 copying src/blobtools/schema/subschemas/multiarray.meta.schema.json -> build/lib/blobtools/schema/subschemas 2022-02-25T14:49:42,620 copying src/blobtools/schema/subschemas/plot.schema.json -> build/lib/blobtools/schema/subschemas 2022-02-25T14:49:42,624 copying src/blobtools/schema/subschemas/reads.schema.json -> build/lib/blobtools/schema/subschemas 2022-02-25T14:49:42,628 copying src/blobtools/schema/subschemas/taxon.basic.schema.json -> build/lib/blobtools/schema/subschemas 2022-02-25T14:49:42,632 copying src/blobtools/schema/subschemas/taxon.schema.json -> build/lib/blobtools/schema/subschemas 2022-02-25T14:49:42,635 copying src/blobtools/schema/subschemas/variable.data.schema.json -> build/lib/blobtools/schema/subschemas 2022-02-25T14:49:42,639 copying src/blobtools/schema/subschemas/variable.meta.schema.json -> build/lib/blobtools/schema/subschemas 2022-02-25T14:49:42,643 copying src/btk_pipeline/add_reads.smk -> build/lib/btk_pipeline 2022-02-25T14:49:42,646 copying src/btk_pipeline/blastn.smk -> build/lib/btk_pipeline 2022-02-25T14:49:42,650 copying src/btk_pipeline/blobtoolkit.smk -> build/lib/btk_pipeline 2022-02-25T14:49:42,654 copying src/btk_pipeline/blobtools.smk -> build/lib/btk_pipeline 2022-02-25T14:49:42,658 copying src/btk_pipeline/busco.smk -> build/lib/btk_pipeline 2022-02-25T14:49:42,661 copying src/btk_pipeline/chunk_stats.smk -> build/lib/btk_pipeline 2022-02-25T14:49:42,665 copying src/btk_pipeline/cov_stats.smk -> build/lib/btk_pipeline 2022-02-25T14:49:42,669 copying src/btk_pipeline/diamond.smk -> build/lib/btk_pipeline 2022-02-25T14:49:42,673 copying src/btk_pipeline/diamond_blastp.smk -> build/lib/btk_pipeline 2022-02-25T14:49:42,677 copying src/btk_pipeline/minimap.smk -> build/lib/btk_pipeline 2022-02-25T14:49:42,681 copying src/btk_pipeline/view.smk -> build/lib/btk_pipeline 2022-02-25T14:49:42,684 copying src/btk_pipeline/window_stats.smk -> build/lib/btk_pipeline 2022-02-25T14:49:42,688 copying src/btk_pipeline/windowmasker.smk -> build/lib/btk_pipeline 2022-02-25T14:49:42,692 creating build/lib/btk_pipeline/rules 2022-02-25T14:49:42,693 copying src/btk_pipeline/rules/_transfer_dataset.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,697 copying src/btk_pipeline/rules/add_cov_to_tsv.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,701 copying src/btk_pipeline/rules/add_summary_to_metadata.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,704 copying src/btk_pipeline/rules/checksum_files.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,708 copying src/btk_pipeline/rules/chunk_fasta.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,712 copying src/btk_pipeline/rules/chunk_fasta_by_busco.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,716 copying src/btk_pipeline/rules/chunk_nohit_fasta.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,719 copying src/btk_pipeline/rules/combine_stats.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,723 copying src/btk_pipeline/rules/count_busco_genes.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,727 copying src/btk_pipeline/rules/extract_busco_genes.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,731 copying src/btk_pipeline/rules/extract_nohit_fasta.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,735 copying src/btk_pipeline/rules/generate_images.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,739 copying src/btk_pipeline/rules/generate_summary.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,742 copying src/btk_pipeline/rules/get_chunked_stats.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,746 copying src/btk_pipeline/rules/get_window_stats.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,750 copying src/btk_pipeline/rules/run_bamtools_stats.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,753 copying src/btk_pipeline/rules/run_blastn.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,758 copying src/btk_pipeline/rules/run_blobtools_add.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,762 copying src/btk_pipeline/rules/run_blobtools_create.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,765 copying src/btk_pipeline/rules/run_busco5.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,769 copying src/btk_pipeline/rules/run_diamond_blastp.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,773 copying src/btk_pipeline/rules/run_diamond_blastx.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,776 copying src/btk_pipeline/rules/run_minimap2_align.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,780 copying src/btk_pipeline/rules/run_minimap2_index.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,784 copying src/btk_pipeline/rules/run_mosdepth.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,788 copying src/btk_pipeline/rules/run_sub_pipeline.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,792 copying src/btk_pipeline/rules/run_windowmasker.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,795 copying src/btk_pipeline/rules/unchunk_blastn.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,799 copying src/btk_pipeline/rules/unchunk_blastx.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,803 copying src/btk_pipeline/rules/unzip_assembly_fasta.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,807 copying src/btk_pipeline/rules/validate_dataset.smk -> build/lib/btk_pipeline/rules 2022-02-25T14:49:42,811 creating build/lib/btk/lib 2022-02-25T14:49:42,812 copying src/btk/lib/version.py -> build/lib/btk/lib 2022-02-25T14:49:42,816 copying src/btk_pipeline/lib/generate_configs.sh -> build/lib/btk_pipeline/lib 2022-02-25T14:49:42,820 copying src/btk_pipeline/lib/lsf_wrapper.sh -> build/lib/btk_pipeline/lib 2022-02-25T14:49:42,824 copying src/btk_pipeline/lib/run_btk_pipeline.sh -> build/lib/btk_pipeline/lib 2022-02-25T14:49:42,851 running install 2022-02-25T14:49:42,914 running install_lib 2022-02-25T14:49:42,921 creating build/bdist.linux-armv7l 2022-02-25T14:49:42,922 creating build/bdist.linux-armv7l/wheel 2022-02-25T14:49:42,925 creating build/bdist.linux-armv7l/wheel/blobtools 2022-02-25T14:49:42,937 creating build/bdist.linux-armv7l/wheel/blobtools/bin 2022-02-25T14:49:46,584 creating build/bdist.linux-armv7l/wheel/blobtools/schema 2022-02-25T14:49:46,591 creating build/bdist.linux-armv7l/wheel/blobtools/schema/subschemas 2022-02-25T14:49:46,653 creating build/bdist.linux-armv7l/wheel/blobtools/lib 2022-02-25T14:49:46,755 creating build/bdist.linux-armv7l/wheel/blobtools/example 2022-02-25T14:49:46,759 creating build/bdist.linux-armv7l/wheel/blobtools/example/FXWY01 2022-02-25T14:49:47,042 creating build/bdist.linux-armv7l/wheel/btk_pipeline 2022-02-25T14:49:47,045 creating build/bdist.linux-armv7l/wheel/btk_pipeline/rules 2022-02-25T14:49:47,184 creating build/bdist.linux-armv7l/wheel/btk_pipeline/lib 2022-02-25T14:49:47,267 creating build/bdist.linux-armv7l/wheel/btk 2022-02-25T14:49:47,280 creating build/bdist.linux-armv7l/wheel/btk/lib 2022-02-25T14:49:47,285 running install_egg_info 2022-02-25T14:49:47,304 Copying src/blobtoolkit.egg-info to build/bdist.linux-armv7l/wheel/blobtoolkit-3.0.5-py3.7.egg-info 2022-02-25T14:49:47,336 running install_scripts 2022-02-25T14:50:31,194 Building wheel for blobtoolkit (pyproject.toml): finished with status 'done' 2022-02-25T14:50:34,062 Created wheel for blobtoolkit: filename=blobtoolkit-3.0.5-py3-none-any.whl size=50169744 sha256=f51f68be8fe2b050d5d8e08bfb2189446e6d9e29562ca291cfde3cafb819f7b1 2022-02-25T14:50:34,064 Stored in directory: /tmp/pip-ephem-wheel-cache-5q9ti2lr/wheels/c1/c3/33/1447636d27bce0c08ed83d035b3b2f2748c89a9f4e58864176 2022-02-25T14:50:34,168 Successfully built blobtoolkit 2022-02-25T14:50:37,892 Removed build tracker: '/tmp/pip-req-tracker-j1me1xhc'