2022-03-01T12:23:44,068 Created temporary directory: /tmp/pip-ephem-wheel-cache-lbrag76e 2022-03-01T12:23:44,074 Created temporary directory: /tmp/pip-req-tracker-u6nh6shz 2022-03-01T12:23:44,075 Initialized build tracking at /tmp/pip-req-tracker-u6nh6shz 2022-03-01T12:23:44,075 Created build tracker: /tmp/pip-req-tracker-u6nh6shz 2022-03-01T12:23:44,076 Entered build tracker: /tmp/pip-req-tracker-u6nh6shz 2022-03-01T12:23:44,077 Created temporary directory: /tmp/pip-wheel-miql964o 2022-03-01T12:23:44,140 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-03-01T12:23:44,149 2 location(s) to search for versions of blobtoolkit: 2022-03-01T12:23:44,149 * https://pypi.org/simple/blobtoolkit/ 2022-03-01T12:23:44,149 * https://www.piwheels.org/simple/blobtoolkit/ 2022-03-01T12:23:44,150 Fetching project page and analyzing links: https://pypi.org/simple/blobtoolkit/ 2022-03-01T12:23:44,151 Getting page https://pypi.org/simple/blobtoolkit/ 2022-03-01T12:23:44,154 Found index url https://pypi.org/simple 2022-03-01T12:23:44,273 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/1f/46/fdc40011246f90aad8dd138024819f7370ebfcd9afbb117b8a980cc6d5e1/blobtoolkit-3.0.0-py3-none-macosx_10_9_x86_64.whl#sha256=6d384eb0c61d2d1b32ce006431fe26bc6d85b60f2ff3a1556435b9880603e3e5 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T12:23:44,274 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/f0/21/e7c86ed90423d80312bcde9e2abc1271d962e1b62c14ebd24e357db35b5f/blobtoolkit-3.0.0-py3-none-macosx_11_0_x86_64.whl#sha256=00b334b094c108be04b4f2b5b6ec89d8ef4a309d67d1b5fb2c8142af4b5693b4 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T12:23:44,274 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/52/ba/d167b2fbe829a5ddefbe2d0b37afb545e9abb78ca135cb1c270e1d86c421/blobtoolkit-3.0.0-py3-none-manylinux2014_x86_64.whl#sha256=3320d62bc24751fa3f61a5f6f635cca689054603e83c28e679318f382c0a79cd (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T12:23:44,275 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/e0/60/c5ae47d2277eacba8cdd4c688d198615c50ba1eca8dcc53c1c077bc357b8/blobtoolkit-3.0.0-py3-none-win_amd64.whl#sha256=5260dd912a30e2b6f5550542b5a0c955eca4f1dc1ad50b732a2091b4dd174815 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T12:23:44,277 Found link https://files.pythonhosted.org/packages/bd/3b/c4debdcadb84982350491350d212cbe0c0c0056f252b1088212ccec55bdf/blobtoolkit-3.0.0.tar.gz#sha256=861dfdfdef24b6d7b12dfd57a3bcfb5802d7e1101002f5055f25102549786695 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4), version: 3.0.0 2022-03-01T12:23:44,278 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/76/33/d2756a9cc32a3ab88bbbf531ab7e46f49450ca62a8fc25c512f2d1a763c8/blobtoolkit-3.0.5-py3-none-macosx_10_9_x86_64.whl#sha256=def3c2b4609a15551d557bd1e2abd768c460e78a398d9a6695305ac0fe2eb441 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T12:23:44,278 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/37/ff/6282568e42b96628af7308880a619d1575df495eede292cba11c497ab365/blobtoolkit-3.0.5-py3-none-macosx_11_0_x86_64.whl#sha256=1c367203e0e027d5b49183025b28939da885dac3aaa34431abb8254a95f091fb (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T12:23:44,279 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/da/e5/fdac6cdb7d36a88e40a83db86f370d4401c3ee5acbf3a555c12732689216/blobtoolkit-3.0.5-py3-none-manylinux2014_x86_64.whl#sha256=d373a8c17aabdea7ee4fe99206475c7b86e70d5ca164bff25bc48d629fff0622 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T12:23:44,279 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/dc/c8/5f576d3c4a98fad60173bc6f2fbf2e448577dd87ceb79ab0dc2dd4445913/blobtoolkit-3.0.5-py3-none-win_amd64.whl#sha256=a81e9c5e47272316d06b203309bc835fbaff707884e4ba3e639ffbd16c1380a4 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T12:23:44,281 Found link https://files.pythonhosted.org/packages/1b/27/11296f2e90f2df30c5bfc4cedab387538d562d8bed9a59ff4ed1a879b4f2/blobtoolkit-3.0.5.tar.gz#sha256=82bd4ce8eed63e44c175dc2cdc01e19b51099c705a2f5e7ff60ab491d6a45e38 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4), version: 3.0.5 2022-03-01T12:23:44,282 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/2b/1d/7b37699a30dabe8da8800a24a1357bb016907c18b6e792d7597ff409d61d/blobtoolkit-3.0.7-py3-none-macosx_10_9_x86_64.whl#sha256=d6e52239b1c6877fc83d8d6b47ffbfa7d3821c268289038c62f9349c531f9fb2 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T12:23:44,282 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/53/76/71431ba94262f86739009986b5454c0804ee29a03e85c4a9b5e0323de630/blobtoolkit-3.0.7-py3-none-macosx_11_0_x86_64.whl#sha256=2d2bc3b4797abb09cfda61afdf0a9d6cae3b0c3adb79a35f5b2eaad88d439b56 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T12:23:44,283 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/1c/f3/50e9e60e37f5a2a1453f409b10eb007658e038a2e4ebfb367dc88237509d/blobtoolkit-3.0.7-py3-none-manylinux2014_x86_64.whl#sha256=99c2761b2a843e07ef0640212ebd70d7602075d2ae72e1db248f4492bd58669f (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T12:23:44,283 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/f0/b9/67f154c82027183909ae56318e668b691eb53d57f3a26203e572a185161e/blobtoolkit-3.0.7-py3-none-win_amd64.whl#sha256=182d43c57dac9addb7c741b9b9230d6a7d7961f91671a68726e8f094c2b82940 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T12:23:44,285 Found link https://files.pythonhosted.org/packages/bd/26/f2e0556146acf8e85bd4d1e44a3fcda553dc27ddeddfada6bd24b86531f6/blobtoolkit-3.0.7.tar.gz#sha256=5ce157a982816312810dcdc10e9fcc14ef5dc4e794df78fd25cc0a1de6e20608 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4), version: 3.0.7 2022-03-01T12:23:44,286 Fetching project page and analyzing links: https://www.piwheels.org/simple/blobtoolkit/ 2022-03-01T12:23:44,287 Getting page https://www.piwheels.org/simple/blobtoolkit/ 2022-03-01T12:23:44,289 Found index url https://www.piwheels.org/simple 2022-03-01T12:23:44,514 Skipping link: No binaries permitted for blobtoolkit: https://www.piwheels.org/simple/blobtoolkit/blobtoolkit-3.0.0-py3-none-any.whl#sha256=cfbf042eeb760126c702f1dc846c505f5c5ab2bf65b1aee5d0f3a4c494dfac97 (from https://www.piwheels.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T12:23:44,514 Skipping link: No binaries permitted for blobtoolkit: https://www.piwheels.org/simple/blobtoolkit/blobtoolkit-3.0.5-py3-none-any.whl#sha256=f51f68be8fe2b050d5d8e08bfb2189446e6d9e29562ca291cfde3cafb819f7b1 (from https://www.piwheels.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T12:23:44,515 Skipping link: not a file: https://www.piwheels.org/simple/blobtoolkit/ 2022-03-01T12:23:44,515 Skipping link: not a file: https://pypi.org/simple/blobtoolkit/ 2022-03-01T12:23:44,550 Given no hashes to check 1 links for project 'blobtoolkit': discarding no candidates 2022-03-01T12:23:44,581 Collecting blobtoolkit==3.0.7 2022-03-01T12:23:44,586 Created temporary directory: /tmp/pip-unpack-pvy0aeii 2022-03-01T12:23:47,013 Downloading blobtoolkit-3.0.7.tar.gz (49.9 MB) 2022-03-01T12:24:08,112 Added blobtoolkit==3.0.7 from https://files.pythonhosted.org/packages/bd/26/f2e0556146acf8e85bd4d1e44a3fcda553dc27ddeddfada6bd24b86531f6/blobtoolkit-3.0.7.tar.gz#sha256=5ce157a982816312810dcdc10e9fcc14ef5dc4e794df78fd25cc0a1de6e20608 to build tracker '/tmp/pip-req-tracker-u6nh6shz' 2022-03-01T12:24:08,122 Created temporary directory: /tmp/pip-build-env-w0g5tyye 2022-03-01T12:24:08,136 Created temporary directory: /tmp/pip-standalone-pip-sxw6cjed 2022-03-01T12:24:10,306 Installing build dependencies: started 2022-03-01T12:24:10,308 Running command pip subprocess to install build dependencies 2022-03-01T12:24:20,302 Using pip 22.0.3 from /tmp/pip-standalone-pip-sxw6cjed/__env_pip__.zip/pip (python 3.7) 2022-03-01T12:24:21,723 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-03-01T12:24:25,631 Collecting setuptools>=42 2022-03-01T12:24:25,886 Using cached https://www.piwheels.org/simple/setuptools/setuptools-60.9.3-py3-none-any.whl (1.1 MB) 2022-03-01T12:24:26,527 Collecting wheel 2022-03-01T12:24:26,562 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-03-01T12:24:31,165 Installing collected packages: wheel, setuptools 2022-03-01T12:24:31,433 Creating /tmp/pip-build-env-w0g5tyye/overlay/bin 2022-03-01T12:24:31,438 changing mode of /tmp/pip-build-env-w0g5tyye/overlay/bin/wheel to 755 2022-03-01T12:24:35,308 Successfully installed setuptools-60.9.3 wheel-0.37.1 2022-03-01T12:24:35,926 Installing build dependencies: finished with status 'done' 2022-03-01T12:24:35,967 Getting requirements to build wheel: started 2022-03-01T12:24:35,970 Running command Getting requirements to build wheel 2022-03-01T12:24:38,105 running egg_info 2022-03-01T12:24:38,196 warning: no previously-included files found matching '.gitignore' 2022-03-01T12:24:38,197 warning: no previously-included files found matching '.coverage' 2022-03-01T12:24:38,198 warning: no previously-included files found matching '.travis.yml' 2022-03-01T12:24:38,200 no previously-included directories found matching '.cache' 2022-03-01T12:24:38,201 no previously-included directories found matching '.git' 2022-03-01T12:24:38,202 no previously-included directories found matching 'build' 2022-03-01T12:24:38,204 no previously-included directories found matching 'dist' 2022-03-01T12:24:38,206 warning: no previously-included files matching '*' found under directory '*.egg-info' 2022-03-01T12:24:38,207 warning: no previously-included files matching '*' found under directory 'tests' 2022-03-01T12:24:38,209 warning: no previously-included files matching '*' found under directory 'conda-recipe' 2022-03-01T12:24:38,210 warning: no previously-included files matching '*' found under directory 'ci' 2022-03-01T12:24:38,211 warning: no previously-included files matching '*' found under directory 'tests' 2022-03-01T12:24:38,395 writing manifest file 'src/blobtoolkit.egg-info/SOURCES.txt' 2022-03-01T12:24:38,525 Getting requirements to build wheel: finished with status 'done' 2022-03-01T12:24:38,544 Created temporary directory: /tmp/pip-modern-metadata-3xuz5xoy 2022-03-01T12:24:38,550 Preparing metadata (pyproject.toml): started 2022-03-01T12:24:38,552 Running command Preparing metadata (pyproject.toml) 2022-03-01T12:24:40,514 running dist_info 2022-03-01T12:24:40,544 creating /tmp/pip-modern-metadata-3xuz5xoy/blobtoolkit.egg-info 2022-03-01T12:24:40,562 writing manifest file '/tmp/pip-modern-metadata-3xuz5xoy/blobtoolkit.egg-info/SOURCES.txt' 2022-03-01T12:24:40,593 warning: no previously-included files found matching '.gitignore' 2022-03-01T12:24:40,594 warning: no previously-included files found matching '.coverage' 2022-03-01T12:24:40,595 warning: no previously-included files found matching '.travis.yml' 2022-03-01T12:24:40,597 no previously-included directories found matching '.cache' 2022-03-01T12:24:40,598 no previously-included directories found matching '.git' 2022-03-01T12:24:40,598 no previously-included directories found matching 'build' 2022-03-01T12:24:40,599 no previously-included directories found matching 'dist' 2022-03-01T12:24:40,601 warning: no previously-included files matching '*' found under directory '*.egg-info' 2022-03-01T12:24:40,602 warning: no previously-included files matching '*' found under directory 'tests' 2022-03-01T12:24:40,603 warning: no previously-included files matching '*' found under directory 'conda-recipe' 2022-03-01T12:24:40,605 warning: no previously-included files matching '*' found under directory 'ci' 2022-03-01T12:24:40,605 warning: no previously-included files matching '*' found under directory 'tests' 2022-03-01T12:24:40,777 writing manifest file '/tmp/pip-modern-metadata-3xuz5xoy/blobtoolkit.egg-info/SOURCES.txt' 2022-03-01T12:24:41,124 Preparing metadata (pyproject.toml): finished with status 'done' 2022-03-01T12:24:41,138 Source in /tmp/pip-wheel-miql964o/blobtoolkit_368eab7922fb4d00bbb7da64446363b9 has version 3.0.7, which satisfies requirement blobtoolkit==3.0.7 from https://files.pythonhosted.org/packages/bd/26/f2e0556146acf8e85bd4d1e44a3fcda553dc27ddeddfada6bd24b86531f6/blobtoolkit-3.0.7.tar.gz#sha256=5ce157a982816312810dcdc10e9fcc14ef5dc4e794df78fd25cc0a1de6e20608 2022-03-01T12:24:41,140 Removed blobtoolkit==3.0.7 from https://files.pythonhosted.org/packages/bd/26/f2e0556146acf8e85bd4d1e44a3fcda553dc27ddeddfada6bd24b86531f6/blobtoolkit-3.0.7.tar.gz#sha256=5ce157a982816312810dcdc10e9fcc14ef5dc4e794df78fd25cc0a1de6e20608 from build tracker '/tmp/pip-req-tracker-u6nh6shz' 2022-03-01T12:24:41,157 Created temporary directory: /tmp/pip-unpack-ok17x_pg 2022-03-01T12:24:41,158 Building wheels for collected packages: blobtoolkit 2022-03-01T12:24:41,167 Created temporary directory: /tmp/pip-wheel-zu_g3a0z 2022-03-01T12:24:41,167 Destination directory: /tmp/pip-wheel-zu_g3a0z 2022-03-01T12:24:41,172 Building wheel for blobtoolkit (pyproject.toml): started 2022-03-01T12:24:41,174 Running command Building wheel for blobtoolkit (pyproject.toml) 2022-03-01T12:24:43,230 running bdist_wheel 2022-03-01T12:24:43,664 running build 2022-03-01T12:24:43,665 running build_py 2022-03-01T12:24:43,673 creating build 2022-03-01T12:24:43,673 creating build/lib 2022-03-01T12:24:43,675 creating build/lib/btk 2022-03-01T12:24:43,677 copying src/btk/__main__.py -> build/lib/btk 2022-03-01T12:24:43,681 copying src/btk/btk.py -> build/lib/btk 2022-03-01T12:24:43,684 copying src/btk/__init__.py -> build/lib/btk 2022-03-01T12:24:43,689 creating build/lib/blobtools 2022-03-01T12:24:43,691 copying src/blobtools/__main__.py -> build/lib/blobtools 2022-03-01T12:24:43,695 copying src/blobtools/blobtools.py -> build/lib/blobtools 2022-03-01T12:24:43,698 copying src/blobtools/__init__.py -> build/lib/blobtools 2022-03-01T12:24:43,703 creating build/lib/btk_pipeline 2022-03-01T12:24:43,705 copying src/btk_pipeline/btk_pipeline.py -> build/lib/btk_pipeline 2022-03-01T12:24:43,710 copying src/btk_pipeline/__main__.py -> build/lib/btk_pipeline 2022-03-01T12:24:43,713 copying src/btk_pipeline/__init__.py -> build/lib/btk_pipeline 2022-03-01T12:24:43,721 creating build/lib/blobtools/lib 2022-03-01T12:24:43,723 copying src/blobtools/lib/host.py -> build/lib/blobtools/lib 2022-03-01T12:24:43,728 copying src/blobtools/lib/field.py -> build/lib/blobtools/lib 2022-03-01T12:24:43,733 copying src/blobtools/lib/remove.py -> build/lib/blobtools/lib 2022-03-01T12:24:43,737 copying src/blobtools/lib/synonyms.py -> build/lib/blobtools/lib 2022-03-01T12:24:43,741 copying src/blobtools/lib/version.py -> build/lib/blobtools/lib 2022-03-01T12:24:43,745 copying src/blobtools/lib/taxdump.py -> build/lib/blobtools/lib 2022-03-01T12:24:43,749 copying src/blobtools/lib/run_external.py -> build/lib/blobtools/lib 2022-03-01T12:24:43,753 copying src/blobtools/lib/filter.py -> build/lib/blobtools/lib 2022-03-01T12:24:43,759 copying src/blobtools/lib/calc.py -> build/lib/blobtools/lib 2022-03-01T12:24:43,762 copying src/blobtools/lib/blob_db.py -> build/lib/blobtools/lib 2022-03-01T12:24:43,767 copying src/blobtools/lib/busco.py -> build/lib/blobtools/lib 2022-03-01T12:24:43,771 copying src/blobtools/lib/bed.py -> build/lib/blobtools/lib 2022-03-01T12:24:43,775 copying src/blobtools/lib/hits.py -> build/lib/blobtools/lib 2022-03-01T12:24:43,780 copying src/blobtools/lib/add.py -> build/lib/blobtools/lib 2022-03-01T12:24:43,784 copying src/blobtools/lib/view.py -> build/lib/blobtools/lib 2022-03-01T12:24:43,789 copying src/blobtools/lib/link.py -> build/lib/blobtools/lib 2022-03-01T12:24:43,792 copying src/blobtools/lib/text.py -> build/lib/blobtools/lib 2022-03-01T12:24:43,797 copying src/blobtools/lib/validate.py -> build/lib/blobtools/lib 2022-03-01T12:24:43,801 copying src/blobtools/lib/key.py -> build/lib/blobtools/lib 2022-03-01T12:24:43,804 copying src/blobtools/lib/cov.py -> build/lib/blobtools/lib 2022-03-01T12:24:43,809 copying src/blobtools/lib/dataset.py -> build/lib/blobtools/lib 2022-03-01T12:24:43,813 copying src/blobtools/lib/taxid.py -> build/lib/blobtools/lib 2022-03-01T12:24:43,817 copying src/blobtools/lib/fetch.py -> build/lib/blobtools/lib 2022-03-01T12:24:43,820 copying src/blobtools/lib/__init__.py -> build/lib/blobtools/lib 2022-03-01T12:24:43,823 copying src/blobtools/lib/file_io.py -> build/lib/blobtools/lib 2022-03-01T12:24:43,827 copying src/blobtools/lib/trnascan.py -> build/lib/blobtools/lib 2022-03-01T12:24:43,830 copying src/blobtools/lib/fasta.py -> build/lib/blobtools/lib 2022-03-01T12:24:43,836 creating build/lib/btk_pipeline/lib 2022-03-01T12:24:43,838 copying src/btk_pipeline/lib/unchunk_blast.py -> build/lib/btk_pipeline/lib 2022-03-01T12:24:43,841 copying src/btk_pipeline/lib/count_busco_genes.py -> build/lib/btk_pipeline/lib 2022-03-01T12:24:43,844 copying src/btk_pipeline/lib/version.py -> build/lib/btk_pipeline/lib 2022-03-01T12:24:43,847 copying src/btk_pipeline/lib/run.py -> build/lib/btk_pipeline/lib 2022-03-01T12:24:43,851 copying src/btk_pipeline/lib/functions.py -> build/lib/btk_pipeline/lib 2022-03-01T12:24:43,854 copying src/btk_pipeline/lib/data.py -> build/lib/btk_pipeline/lib 2022-03-01T12:24:43,858 copying src/btk_pipeline/lib/generate_static_images.py -> build/lib/btk_pipeline/lib 2022-03-01T12:24:43,862 copying src/btk_pipeline/lib/transfer_completed.py -> build/lib/btk_pipeline/lib 2022-03-01T12:24:43,865 copying src/btk_pipeline/lib/extract_busco_genes.py -> build/lib/btk_pipeline/lib 2022-03-01T12:24:43,869 copying src/btk_pipeline/lib/track_bioproject_accessions.py -> build/lib/btk_pipeline/lib 2022-03-01T12:24:43,873 copying src/btk_pipeline/lib/window_stats.py -> build/lib/btk_pipeline/lib 2022-03-01T12:24:43,877 copying src/btk_pipeline/lib/add_summary_to_metadata.py -> build/lib/btk_pipeline/lib 2022-03-01T12:24:43,881 copying src/btk_pipeline/lib/chunk_fasta.py -> build/lib/btk_pipeline/lib 2022-03-01T12:24:43,886 copying src/btk_pipeline/lib/__init__.py -> build/lib/btk_pipeline/lib 2022-03-01T12:24:43,889 copying src/btk_pipeline/lib/generate_config.py -> build/lib/btk_pipeline/lib 2022-03-01T12:24:43,893 running egg_info 2022-03-01T12:24:43,962 warning: no previously-included files found matching '.gitignore' 2022-03-01T12:24:43,963 warning: no previously-included files found matching '.coverage' 2022-03-01T12:24:43,964 warning: no previously-included files found matching '.travis.yml' 2022-03-01T12:24:43,966 no previously-included directories found matching '.cache' 2022-03-01T12:24:43,967 no previously-included directories found matching '.git' 2022-03-01T12:24:43,969 no previously-included directories found matching 'build' 2022-03-01T12:24:43,970 no previously-included directories found matching 'dist' 2022-03-01T12:24:43,972 warning: no previously-included files matching '*' found under directory '*.egg-info' 2022-03-01T12:24:43,973 warning: no previously-included files matching '*' found under directory 'tests' 2022-03-01T12:24:43,975 warning: no previously-included files matching '*' found under directory 'conda-recipe' 2022-03-01T12:24:43,976 warning: no previously-included files matching '*' found under directory 'ci' 2022-03-01T12:24:43,977 warning: no previously-included files matching '*' found under directory 'tests' 2022-03-01T12:24:44,152 writing manifest file 'src/blobtoolkit.egg-info/SOURCES.txt' 2022-03-01T12:24:44,186 creating build/lib/btk/lib 2022-03-01T12:24:44,188 copying src/btk/lib/version.py -> build/lib/btk/lib 2022-03-01T12:24:44,192 creating build/lib/blobtools/bin 2022-03-01T12:24:44,193 copying src/blobtools/bin/blobtoolkit-api-linux -> build/lib/blobtools/bin 2022-03-01T12:24:46,305 copying src/blobtools/bin/blobtoolkit-viewer-linux -> build/lib/blobtools/bin 2022-03-01T12:24:47,901 creating build/lib/blobtools/example 2022-03-01T12:24:47,902 creating build/lib/blobtools/example/FXWY01 2022-03-01T12:24:47,905 copying src/blobtools/example/FXWY01/ERR1656467_cov.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:47,910 copying src/blobtools/example/FXWY01/ERR1656467_read_cov.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:47,914 copying src/blobtools/example/FXWY01/bestsumorder_class.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:47,919 copying src/blobtools/example/FXWY01/bestsumorder_class_cindex.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:47,923 copying src/blobtools/example/FXWY01/bestsumorder_class_positions.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:47,944 copying src/blobtools/example/FXWY01/bestsumorder_class_score.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:47,949 copying src/blobtools/example/FXWY01/bestsumorder_family.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:47,953 copying src/blobtools/example/FXWY01/bestsumorder_family_cindex.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:47,958 copying src/blobtools/example/FXWY01/bestsumorder_family_positions.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:47,978 copying src/blobtools/example/FXWY01/bestsumorder_family_score.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:47,983 copying src/blobtools/example/FXWY01/bestsumorder_genus.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:47,987 copying src/blobtools/example/FXWY01/bestsumorder_genus_cindex.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:47,992 copying src/blobtools/example/FXWY01/bestsumorder_genus_positions.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,013 copying src/blobtools/example/FXWY01/bestsumorder_genus_score.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,017 copying src/blobtools/example/FXWY01/bestsumorder_kingdom.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,021 copying src/blobtools/example/FXWY01/bestsumorder_kingdom_cindex.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,025 copying src/blobtools/example/FXWY01/bestsumorder_kingdom_positions.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,044 copying src/blobtools/example/FXWY01/bestsumorder_kingdom_score.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,049 copying src/blobtools/example/FXWY01/bestsumorder_order.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,053 copying src/blobtools/example/FXWY01/bestsumorder_order_cindex.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,058 copying src/blobtools/example/FXWY01/bestsumorder_order_positions.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,077 copying src/blobtools/example/FXWY01/bestsumorder_order_score.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,081 copying src/blobtools/example/FXWY01/bestsumorder_phylum.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,086 copying src/blobtools/example/FXWY01/bestsumorder_phylum_cindex.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,092 copying src/blobtools/example/FXWY01/bestsumorder_phylum_positions.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,111 copying src/blobtools/example/FXWY01/bestsumorder_phylum_score.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,115 copying src/blobtools/example/FXWY01/bestsumorder_positions.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,138 copying src/blobtools/example/FXWY01/bestsumorder_species.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,142 copying src/blobtools/example/FXWY01/bestsumorder_species_cindex.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,145 copying src/blobtools/example/FXWY01/bestsumorder_species_positions.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,166 copying src/blobtools/example/FXWY01/bestsumorder_species_score.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,170 copying src/blobtools/example/FXWY01/bestsumorder_superkingdom.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,173 copying src/blobtools/example/FXWY01/bestsumorder_superkingdom_cindex.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,177 copying src/blobtools/example/FXWY01/bestsumorder_superkingdom_positions.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,195 copying src/blobtools/example/FXWY01/bestsumorder_superkingdom_score.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,199 copying src/blobtools/example/FXWY01/eukaryota_odb9_busco.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,204 copying src/blobtools/example/FXWY01/gc.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,208 copying src/blobtools/example/FXWY01/identifiers.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,212 copying src/blobtools/example/FXWY01/length.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,215 copying src/blobtools/example/FXWY01/meta.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,220 copying src/blobtools/example/FXWY01/metazoa_odb9_busco.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,225 copying src/blobtools/example/FXWY01/ncount.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,229 copying src/blobtools/example/FXWY01/nematoda_odb9_busco.json -> build/lib/blobtools/example/FXWY01 2022-03-01T12:24:48,235 creating build/lib/blobtools/schema 2022-03-01T12:24:48,236 copying src/blobtools/schema/basic.schema.json -> build/lib/blobtools/schema 2022-03-01T12:24:48,241 copying src/blobtools/schema/meta.schema.json -> build/lib/blobtools/schema 2022-03-01T12:24:48,244 creating build/lib/blobtools/schema/subschemas 2022-03-01T12:24:48,246 copying src/blobtools/schema/subschemas/array.data.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T12:24:48,250 copying src/blobtools/schema/subschemas/array.meta.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T12:24:48,254 copying src/blobtools/schema/subschemas/assembly.basic.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T12:24:48,258 copying src/blobtools/schema/subschemas/assembly.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T12:24:48,261 copying src/blobtools/schema/subschemas/category.data.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T12:24:48,265 copying src/blobtools/schema/subschemas/category.meta.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T12:24:48,268 copying src/blobtools/schema/subschemas/fields.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T12:24:48,272 copying src/blobtools/schema/subschemas/identifier.data.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T12:24:48,276 copying src/blobtools/schema/subschemas/identifier.meta.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T12:24:48,280 copying src/blobtools/schema/subschemas/multiarray.data.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T12:24:48,284 copying src/blobtools/schema/subschemas/multiarray.meta.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T12:24:48,287 copying src/blobtools/schema/subschemas/plot.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T12:24:48,291 copying src/blobtools/schema/subschemas/reads.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T12:24:48,295 copying src/blobtools/schema/subschemas/taxon.basic.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T12:24:48,299 copying src/blobtools/schema/subschemas/taxon.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T12:24:48,302 copying src/blobtools/schema/subschemas/variable.data.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T12:24:48,306 copying src/blobtools/schema/subschemas/variable.meta.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T12:24:48,310 copying src/btk_pipeline/add_reads.smk -> build/lib/btk_pipeline 2022-03-01T12:24:48,313 copying src/btk_pipeline/blastn.smk -> build/lib/btk_pipeline 2022-03-01T12:24:48,317 copying src/btk_pipeline/blobtoolkit.smk -> build/lib/btk_pipeline 2022-03-01T12:24:48,321 copying src/btk_pipeline/blobtools.smk -> build/lib/btk_pipeline 2022-03-01T12:24:48,324 copying src/btk_pipeline/busco.smk -> build/lib/btk_pipeline 2022-03-01T12:24:48,328 copying src/btk_pipeline/chunk_stats.smk -> build/lib/btk_pipeline 2022-03-01T12:24:48,332 copying src/btk_pipeline/cov_stats.smk -> build/lib/btk_pipeline 2022-03-01T12:24:48,336 copying src/btk_pipeline/diamond.smk -> build/lib/btk_pipeline 2022-03-01T12:24:48,340 copying src/btk_pipeline/diamond_blastp.smk -> build/lib/btk_pipeline 2022-03-01T12:24:48,343 copying src/btk_pipeline/minimap.smk -> build/lib/btk_pipeline 2022-03-01T12:24:48,347 copying src/btk_pipeline/view.smk -> build/lib/btk_pipeline 2022-03-01T12:24:48,351 copying src/btk_pipeline/window_stats.smk -> build/lib/btk_pipeline 2022-03-01T12:24:48,355 copying src/btk_pipeline/windowmasker.smk -> build/lib/btk_pipeline 2022-03-01T12:24:48,359 creating build/lib/btk_pipeline/rules 2022-03-01T12:24:48,360 copying src/btk_pipeline/rules/_transfer_dataset.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,364 copying src/btk_pipeline/rules/add_cov_to_tsv.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,368 copying src/btk_pipeline/rules/add_summary_to_metadata.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,372 copying src/btk_pipeline/rules/checksum_files.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,376 copying src/btk_pipeline/rules/chunk_fasta.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,380 copying src/btk_pipeline/rules/chunk_fasta_by_busco.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,384 copying src/btk_pipeline/rules/chunk_nohit_fasta.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,388 copying src/btk_pipeline/rules/combine_stats.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,392 copying src/btk_pipeline/rules/count_busco_genes.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,396 copying src/btk_pipeline/rules/extract_busco_genes.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,399 copying src/btk_pipeline/rules/extract_nohit_fasta.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,403 copying src/btk_pipeline/rules/generate_images.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,407 copying src/btk_pipeline/rules/generate_summary.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,411 copying src/btk_pipeline/rules/get_chunked_stats.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,415 copying src/btk_pipeline/rules/get_window_stats.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,419 copying src/btk_pipeline/rules/run_bamtools_stats.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,423 copying src/btk_pipeline/rules/run_blastn.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,426 copying src/btk_pipeline/rules/run_blobtools_add.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,430 copying src/btk_pipeline/rules/run_blobtools_create.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,434 copying src/btk_pipeline/rules/run_busco5.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,438 copying src/btk_pipeline/rules/run_diamond_blastp.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,442 copying src/btk_pipeline/rules/run_diamond_blastx.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,446 copying src/btk_pipeline/rules/run_minimap2_align.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,450 copying src/btk_pipeline/rules/run_minimap2_index.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,454 copying src/btk_pipeline/rules/run_mosdepth.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,458 copying src/btk_pipeline/rules/run_sub_pipeline.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,462 copying src/btk_pipeline/rules/run_windowmasker.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,465 copying src/btk_pipeline/rules/unchunk_blastn.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,469 copying src/btk_pipeline/rules/unchunk_blastx.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,473 copying src/btk_pipeline/rules/unzip_assembly_fasta.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,477 copying src/btk_pipeline/rules/validate_dataset.smk -> build/lib/btk_pipeline/rules 2022-03-01T12:24:48,481 copying src/btk_pipeline/lib/generate_configs.sh -> build/lib/btk_pipeline/lib 2022-03-01T12:24:48,485 copying src/btk_pipeline/lib/lsf_wrapper.sh -> build/lib/btk_pipeline/lib 2022-03-01T12:24:48,488 copying src/btk_pipeline/lib/run_btk_pipeline.sh -> build/lib/btk_pipeline/lib 2022-03-01T12:24:48,516 running install 2022-03-01T12:24:48,578 running install_lib 2022-03-01T12:24:48,585 creating build/bdist.linux-armv7l 2022-03-01T12:24:48,586 creating build/bdist.linux-armv7l/wheel 2022-03-01T12:24:48,589 creating build/bdist.linux-armv7l/wheel/btk 2022-03-01T12:24:48,596 creating build/bdist.linux-armv7l/wheel/btk/lib 2022-03-01T12:24:48,609 creating build/bdist.linux-armv7l/wheel/blobtools 2022-03-01T12:24:48,616 creating build/bdist.linux-armv7l/wheel/blobtools/lib 2022-03-01T12:24:48,718 creating build/bdist.linux-armv7l/wheel/blobtools/bin 2022-03-01T12:24:52,319 creating build/bdist.linux-armv7l/wheel/blobtools/example 2022-03-01T12:24:52,323 creating build/bdist.linux-armv7l/wheel/blobtools/example/FXWY01 2022-03-01T12:24:52,626 creating build/bdist.linux-armv7l/wheel/blobtools/schema 2022-03-01T12:24:52,629 creating build/bdist.linux-armv7l/wheel/blobtools/schema/subschemas 2022-03-01T12:24:52,694 creating build/bdist.linux-armv7l/wheel/btk_pipeline 2022-03-01T12:24:52,710 creating build/bdist.linux-armv7l/wheel/btk_pipeline/lib 2022-03-01T12:24:52,788 creating build/bdist.linux-armv7l/wheel/btk_pipeline/rules 2022-03-01T12:24:52,913 running install_egg_info 2022-03-01T12:24:52,929 Copying src/blobtoolkit.egg-info to build/bdist.linux-armv7l/wheel/blobtoolkit-3.0.7-py3.7.egg-info 2022-03-01T12:24:52,959 running install_scripts 2022-03-01T12:25:36,651 Building wheel for blobtoolkit (pyproject.toml): finished with status 'done' 2022-03-01T12:25:39,515 Created wheel for blobtoolkit: filename=blobtoolkit-3.0.7-py3-none-any.whl size=50168112 sha256=8dc2626a64393041adeaeefe7c4419abcb44d668d375fe090ccfab9c4451147d 2022-03-01T12:25:39,517 Stored in directory: /tmp/pip-ephem-wheel-cache-lbrag76e/wheels/c2/fd/c2/8fc7c32f443315e377cb9c09c93ac1bd3d8da3875e4cda8a7e 2022-03-01T12:25:39,612 Successfully built blobtoolkit 2022-03-01T12:25:43,401 Removed build tracker: '/tmp/pip-req-tracker-u6nh6shz'