2022-03-01T13:55:42,302 Created temporary directory: /tmp/pip-ephem-wheel-cache-6qsuwdjv 2022-03-01T13:55:42,308 Created temporary directory: /tmp/pip-req-tracker-10ib949x 2022-03-01T13:55:42,309 Initialized build tracking at /tmp/pip-req-tracker-10ib949x 2022-03-01T13:55:42,309 Created build tracker: /tmp/pip-req-tracker-10ib949x 2022-03-01T13:55:42,309 Entered build tracker: /tmp/pip-req-tracker-10ib949x 2022-03-01T13:55:42,311 Created temporary directory: /tmp/pip-wheel-30wcrgqo 2022-03-01T13:55:42,372 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-03-01T13:55:42,381 2 location(s) to search for versions of blobtoolkit: 2022-03-01T13:55:42,381 * https://pypi.org/simple/blobtoolkit/ 2022-03-01T13:55:42,381 * https://www.piwheels.org/simple/blobtoolkit/ 2022-03-01T13:55:42,382 Fetching project page and analyzing links: https://pypi.org/simple/blobtoolkit/ 2022-03-01T13:55:42,383 Getting page https://pypi.org/simple/blobtoolkit/ 2022-03-01T13:55:42,386 Found index url https://pypi.org/simple 2022-03-01T13:55:42,507 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/1f/46/fdc40011246f90aad8dd138024819f7370ebfcd9afbb117b8a980cc6d5e1/blobtoolkit-3.0.0-py3-none-macosx_10_9_x86_64.whl#sha256=6d384eb0c61d2d1b32ce006431fe26bc6d85b60f2ff3a1556435b9880603e3e5 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T13:55:42,508 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/f0/21/e7c86ed90423d80312bcde9e2abc1271d962e1b62c14ebd24e357db35b5f/blobtoolkit-3.0.0-py3-none-macosx_11_0_x86_64.whl#sha256=00b334b094c108be04b4f2b5b6ec89d8ef4a309d67d1b5fb2c8142af4b5693b4 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T13:55:42,509 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/52/ba/d167b2fbe829a5ddefbe2d0b37afb545e9abb78ca135cb1c270e1d86c421/blobtoolkit-3.0.0-py3-none-manylinux2014_x86_64.whl#sha256=3320d62bc24751fa3f61a5f6f635cca689054603e83c28e679318f382c0a79cd (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T13:55:42,509 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/e0/60/c5ae47d2277eacba8cdd4c688d198615c50ba1eca8dcc53c1c077bc357b8/blobtoolkit-3.0.0-py3-none-win_amd64.whl#sha256=5260dd912a30e2b6f5550542b5a0c955eca4f1dc1ad50b732a2091b4dd174815 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T13:55:42,511 Found link https://files.pythonhosted.org/packages/bd/3b/c4debdcadb84982350491350d212cbe0c0c0056f252b1088212ccec55bdf/blobtoolkit-3.0.0.tar.gz#sha256=861dfdfdef24b6d7b12dfd57a3bcfb5802d7e1101002f5055f25102549786695 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4), version: 3.0.0 2022-03-01T13:55:42,512 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/76/33/d2756a9cc32a3ab88bbbf531ab7e46f49450ca62a8fc25c512f2d1a763c8/blobtoolkit-3.0.5-py3-none-macosx_10_9_x86_64.whl#sha256=def3c2b4609a15551d557bd1e2abd768c460e78a398d9a6695305ac0fe2eb441 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T13:55:42,512 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/37/ff/6282568e42b96628af7308880a619d1575df495eede292cba11c497ab365/blobtoolkit-3.0.5-py3-none-macosx_11_0_x86_64.whl#sha256=1c367203e0e027d5b49183025b28939da885dac3aaa34431abb8254a95f091fb (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T13:55:42,513 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/da/e5/fdac6cdb7d36a88e40a83db86f370d4401c3ee5acbf3a555c12732689216/blobtoolkit-3.0.5-py3-none-manylinux2014_x86_64.whl#sha256=d373a8c17aabdea7ee4fe99206475c7b86e70d5ca164bff25bc48d629fff0622 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T13:55:42,514 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/dc/c8/5f576d3c4a98fad60173bc6f2fbf2e448577dd87ceb79ab0dc2dd4445913/blobtoolkit-3.0.5-py3-none-win_amd64.whl#sha256=a81e9c5e47272316d06b203309bc835fbaff707884e4ba3e639ffbd16c1380a4 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T13:55:42,515 Found link https://files.pythonhosted.org/packages/1b/27/11296f2e90f2df30c5bfc4cedab387538d562d8bed9a59ff4ed1a879b4f2/blobtoolkit-3.0.5.tar.gz#sha256=82bd4ce8eed63e44c175dc2cdc01e19b51099c705a2f5e7ff60ab491d6a45e38 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4), version: 3.0.5 2022-03-01T13:55:42,516 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/2b/1d/7b37699a30dabe8da8800a24a1357bb016907c18b6e792d7597ff409d61d/blobtoolkit-3.0.7-py3-none-macosx_10_9_x86_64.whl#sha256=d6e52239b1c6877fc83d8d6b47ffbfa7d3821c268289038c62f9349c531f9fb2 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T13:55:42,517 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/53/76/71431ba94262f86739009986b5454c0804ee29a03e85c4a9b5e0323de630/blobtoolkit-3.0.7-py3-none-macosx_11_0_x86_64.whl#sha256=2d2bc3b4797abb09cfda61afdf0a9d6cae3b0c3adb79a35f5b2eaad88d439b56 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T13:55:42,517 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/1c/f3/50e9e60e37f5a2a1453f409b10eb007658e038a2e4ebfb367dc88237509d/blobtoolkit-3.0.7-py3-none-manylinux2014_x86_64.whl#sha256=99c2761b2a843e07ef0640212ebd70d7602075d2ae72e1db248f4492bd58669f (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T13:55:42,518 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/f0/b9/67f154c82027183909ae56318e668b691eb53d57f3a26203e572a185161e/blobtoolkit-3.0.7-py3-none-win_amd64.whl#sha256=182d43c57dac9addb7c741b9b9230d6a7d7961f91671a68726e8f094c2b82940 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T13:55:42,519 Found link https://files.pythonhosted.org/packages/bd/26/f2e0556146acf8e85bd4d1e44a3fcda553dc27ddeddfada6bd24b86531f6/blobtoolkit-3.0.7.tar.gz#sha256=5ce157a982816312810dcdc10e9fcc14ef5dc4e794df78fd25cc0a1de6e20608 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4), version: 3.0.7 2022-03-01T13:55:42,520 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/73/a0/66c113961e50698739c05126b87345e49882f5396990189f7f80280def6f/blobtoolkit-3.1.0-py3-none-macosx_10_9_x86_64.whl#sha256=310b5156f8ad3654cb9136b57ac9347c65e4a7dbb2fed95ea2b7dab596188fda (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T13:55:42,520 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/93/20/42b4bc625a45e78ca7e537f0db645ddc30d04e4db8a7ccba573539db4b6c/blobtoolkit-3.1.0-py3-none-macosx_11_0_x86_64.whl#sha256=cc5b12cba8feb2714ce658ef5e23bc222db152edf592c7cea0fa4546967447e2 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T13:55:42,521 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/b4/a6/28a98716c0934845e65dc70c468bd013e1e1c7f1a286c69d586d3554b824/blobtoolkit-3.1.0-py3-none-manylinux2014_x86_64.whl#sha256=463df2d1a8e176d31c4a5906363f8f53e7b5b701eee54d249a39c1fc6b58e359 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T13:55:42,522 Skipping link: No binaries permitted for blobtoolkit: https://files.pythonhosted.org/packages/e5/bf/2800aa51c26cda046d7e32f0f473e28acf3eb614ff9f09d83d1e99bd0d49/blobtoolkit-3.1.0-py3-none-win_amd64.whl#sha256=20125d304b23ad01f531a0b914a877ed187ed9121065e0f31f455f4a76093d68 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T13:55:42,523 Found link https://files.pythonhosted.org/packages/ad/b0/041e6eb122d0eaa9e72987afebfe20c615a5186c1b0a84e81337bbcd108b/blobtoolkit-3.1.0.tar.gz#sha256=697ddb1b34e9f5eb9e796ad7d4d3327ffb653875d24d99faf747ed6215946fa0 (from https://pypi.org/simple/blobtoolkit/) (requires-python:>=3.6, <4), version: 3.1.0 2022-03-01T13:55:42,524 Fetching project page and analyzing links: https://www.piwheels.org/simple/blobtoolkit/ 2022-03-01T13:55:42,525 Getting page https://www.piwheels.org/simple/blobtoolkit/ 2022-03-01T13:55:42,527 Found index url https://www.piwheels.org/simple 2022-03-01T13:55:42,756 Skipping link: No binaries permitted for blobtoolkit: https://www.piwheels.org/simple/blobtoolkit/blobtoolkit-3.0.0-py3-none-any.whl#sha256=cfbf042eeb760126c702f1dc846c505f5c5ab2bf65b1aee5d0f3a4c494dfac97 (from https://www.piwheels.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T13:55:42,757 Skipping link: No binaries permitted for blobtoolkit: https://www.piwheels.org/simple/blobtoolkit/blobtoolkit-3.0.5-py3-none-any.whl#sha256=f51f68be8fe2b050d5d8e08bfb2189446e6d9e29562ca291cfde3cafb819f7b1 (from https://www.piwheels.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T13:55:42,757 Skipping link: No binaries permitted for blobtoolkit: https://www.piwheels.org/simple/blobtoolkit/blobtoolkit-3.0.7-py3-none-any.whl#sha256=8dc2626a64393041adeaeefe7c4419abcb44d668d375fe090ccfab9c4451147d (from https://www.piwheels.org/simple/blobtoolkit/) (requires-python:>=3.6, <4) 2022-03-01T13:55:42,758 Skipping link: not a file: https://www.piwheels.org/simple/blobtoolkit/ 2022-03-01T13:55:42,758 Skipping link: not a file: https://pypi.org/simple/blobtoolkit/ 2022-03-01T13:55:42,793 Given no hashes to check 1 links for project 'blobtoolkit': discarding no candidates 2022-03-01T13:55:42,824 Collecting blobtoolkit==3.1.0 2022-03-01T13:55:42,829 Created temporary directory: /tmp/pip-unpack-re300mq1 2022-03-01T13:55:45,277 Downloading blobtoolkit-3.1.0.tar.gz (49.9 MB) 2022-03-01T13:56:07,192 Added blobtoolkit==3.1.0 from https://files.pythonhosted.org/packages/ad/b0/041e6eb122d0eaa9e72987afebfe20c615a5186c1b0a84e81337bbcd108b/blobtoolkit-3.1.0.tar.gz#sha256=697ddb1b34e9f5eb9e796ad7d4d3327ffb653875d24d99faf747ed6215946fa0 to build tracker '/tmp/pip-req-tracker-10ib949x' 2022-03-01T13:56:07,202 Created temporary directory: /tmp/pip-build-env-a6f_dbts 2022-03-01T13:56:07,217 Created temporary directory: /tmp/pip-standalone-pip-v_0xp7yx 2022-03-01T13:56:09,462 Installing build dependencies: started 2022-03-01T13:56:09,464 Running command pip subprocess to install build dependencies 2022-03-01T13:56:19,492 Using pip 22.0.3 from /tmp/pip-standalone-pip-v_0xp7yx/__env_pip__.zip/pip (python 3.7) 2022-03-01T13:56:20,843 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-03-01T13:56:24,702 Collecting setuptools>=42 2022-03-01T13:56:24,950 Using cached https://www.piwheels.org/simple/setuptools/setuptools-60.9.3-py3-none-any.whl (1.1 MB) 2022-03-01T13:56:25,590 Collecting wheel 2022-03-01T13:56:25,625 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-03-01T13:56:29,867 Installing collected packages: wheel, setuptools 2022-03-01T13:56:30,132 Creating /tmp/pip-build-env-a6f_dbts/overlay/bin 2022-03-01T13:56:30,137 changing mode of /tmp/pip-build-env-a6f_dbts/overlay/bin/wheel to 755 2022-03-01T13:56:33,986 Successfully installed setuptools-60.9.3 wheel-0.37.1 2022-03-01T13:56:34,608 Installing build dependencies: finished with status 'done' 2022-03-01T13:56:34,647 Getting requirements to build wheel: started 2022-03-01T13:56:34,649 Running command Getting requirements to build wheel 2022-03-01T13:56:36,757 running egg_info 2022-03-01T13:56:36,851 warning: no previously-included files found matching '.gitignore' 2022-03-01T13:56:36,853 warning: no previously-included files found matching '.coverage' 2022-03-01T13:56:36,854 warning: no previously-included files found matching '.travis.yml' 2022-03-01T13:56:36,855 no previously-included directories found matching '.cache' 2022-03-01T13:56:36,857 no previously-included directories found matching '.git' 2022-03-01T13:56:36,858 no previously-included directories found matching 'build' 2022-03-01T13:56:36,859 no previously-included directories found matching 'dist' 2022-03-01T13:56:36,861 warning: no previously-included files matching '*' found under directory '*.egg-info' 2022-03-01T13:56:36,863 warning: no previously-included files matching '*' found under directory 'tests' 2022-03-01T13:56:36,865 warning: no previously-included files matching '*' found under directory 'conda-recipe' 2022-03-01T13:56:36,866 warning: no previously-included files matching '*' found under directory 'ci' 2022-03-01T13:56:36,867 warning: no previously-included files matching '*' found under directory 'tests' 2022-03-01T13:56:37,057 writing manifest file 'src/blobtoolkit.egg-info/SOURCES.txt' 2022-03-01T13:56:37,186 Getting requirements to build wheel: finished with status 'done' 2022-03-01T13:56:37,205 Created temporary directory: /tmp/pip-modern-metadata-7816pcb8 2022-03-01T13:56:37,211 Preparing metadata (pyproject.toml): started 2022-03-01T13:56:37,213 Running command Preparing metadata (pyproject.toml) 2022-03-01T13:56:39,159 running dist_info 2022-03-01T13:56:39,188 creating /tmp/pip-modern-metadata-7816pcb8/blobtoolkit.egg-info 2022-03-01T13:56:39,207 writing manifest file '/tmp/pip-modern-metadata-7816pcb8/blobtoolkit.egg-info/SOURCES.txt' 2022-03-01T13:56:39,238 warning: no previously-included files found matching '.gitignore' 2022-03-01T13:56:39,239 warning: no previously-included files found matching '.coverage' 2022-03-01T13:56:39,240 warning: no previously-included files found matching '.travis.yml' 2022-03-01T13:56:39,241 no previously-included directories found matching '.cache' 2022-03-01T13:56:39,242 no previously-included directories found matching '.git' 2022-03-01T13:56:39,243 no previously-included directories found matching 'build' 2022-03-01T13:56:39,244 no previously-included directories found matching 'dist' 2022-03-01T13:56:39,246 warning: no previously-included files matching '*' found under directory '*.egg-info' 2022-03-01T13:56:39,247 warning: no previously-included files matching '*' found under directory 'tests' 2022-03-01T13:56:39,248 warning: no previously-included files matching '*' found under directory 'conda-recipe' 2022-03-01T13:56:39,249 warning: no previously-included files matching '*' found under directory 'ci' 2022-03-01T13:56:39,250 warning: no previously-included files matching '*' found under directory 'tests' 2022-03-01T13:56:39,426 writing manifest file '/tmp/pip-modern-metadata-7816pcb8/blobtoolkit.egg-info/SOURCES.txt' 2022-03-01T13:56:39,769 Preparing metadata (pyproject.toml): finished with status 'done' 2022-03-01T13:56:39,784 Source in /tmp/pip-wheel-30wcrgqo/blobtoolkit_3b5b095691f1480c882000e985c1d8d3 has version 3.1.0, which satisfies requirement blobtoolkit==3.1.0 from https://files.pythonhosted.org/packages/ad/b0/041e6eb122d0eaa9e72987afebfe20c615a5186c1b0a84e81337bbcd108b/blobtoolkit-3.1.0.tar.gz#sha256=697ddb1b34e9f5eb9e796ad7d4d3327ffb653875d24d99faf747ed6215946fa0 2022-03-01T13:56:39,786 Removed blobtoolkit==3.1.0 from https://files.pythonhosted.org/packages/ad/b0/041e6eb122d0eaa9e72987afebfe20c615a5186c1b0a84e81337bbcd108b/blobtoolkit-3.1.0.tar.gz#sha256=697ddb1b34e9f5eb9e796ad7d4d3327ffb653875d24d99faf747ed6215946fa0 from build tracker '/tmp/pip-req-tracker-10ib949x' 2022-03-01T13:56:39,803 Created temporary directory: /tmp/pip-unpack-dq9nk49e 2022-03-01T13:56:39,804 Building wheels for collected packages: blobtoolkit 2022-03-01T13:56:39,814 Created temporary directory: /tmp/pip-wheel-4o75vhzi 2022-03-01T13:56:39,814 Destination directory: /tmp/pip-wheel-4o75vhzi 2022-03-01T13:56:39,819 Building wheel for blobtoolkit (pyproject.toml): started 2022-03-01T13:56:39,821 Running command Building wheel for blobtoolkit (pyproject.toml) 2022-03-01T13:56:41,864 running bdist_wheel 2022-03-01T13:56:42,289 running build 2022-03-01T13:56:42,289 running build_py 2022-03-01T13:56:42,297 creating build 2022-03-01T13:56:42,298 creating build/lib 2022-03-01T13:56:42,299 creating build/lib/blobtools 2022-03-01T13:56:42,301 copying src/blobtools/__init__.py -> build/lib/blobtools 2022-03-01T13:56:42,306 copying src/blobtools/blobtools.py -> build/lib/blobtools 2022-03-01T13:56:42,309 copying src/blobtools/__main__.py -> build/lib/blobtools 2022-03-01T13:56:42,314 creating build/lib/btk 2022-03-01T13:56:42,316 copying src/btk/__init__.py -> build/lib/btk 2022-03-01T13:56:42,320 copying src/btk/btk.py -> build/lib/btk 2022-03-01T13:56:42,324 copying src/btk/__main__.py -> build/lib/btk 2022-03-01T13:56:42,328 creating build/lib/btk_pipeline 2022-03-01T13:56:42,330 copying src/btk_pipeline/__init__.py -> build/lib/btk_pipeline 2022-03-01T13:56:42,333 copying src/btk_pipeline/btk_pipeline.py -> build/lib/btk_pipeline 2022-03-01T13:56:42,337 copying src/btk_pipeline/__main__.py -> build/lib/btk_pipeline 2022-03-01T13:56:42,344 creating build/lib/blobtools/lib 2022-03-01T13:56:42,346 copying src/blobtools/lib/busco.py -> build/lib/blobtools/lib 2022-03-01T13:56:42,351 copying src/blobtools/lib/fetch.py -> build/lib/blobtools/lib 2022-03-01T13:56:42,355 copying src/blobtools/lib/filter.py -> build/lib/blobtools/lib 2022-03-01T13:56:42,359 copying src/blobtools/lib/__init__.py -> build/lib/blobtools/lib 2022-03-01T13:56:42,362 copying src/blobtools/lib/blob_db.py -> build/lib/blobtools/lib 2022-03-01T13:56:42,367 copying src/blobtools/lib/trnascan.py -> build/lib/blobtools/lib 2022-03-01T13:56:42,370 copying src/blobtools/lib/run_external.py -> build/lib/blobtools/lib 2022-03-01T13:56:42,374 copying src/blobtools/lib/calc.py -> build/lib/blobtools/lib 2022-03-01T13:56:42,377 copying src/blobtools/lib/add.py -> build/lib/blobtools/lib 2022-03-01T13:56:42,381 copying src/blobtools/lib/text.py -> build/lib/blobtools/lib 2022-03-01T13:56:42,386 copying src/blobtools/lib/dataset.py -> build/lib/blobtools/lib 2022-03-01T13:56:42,390 copying src/blobtools/lib/cov.py -> build/lib/blobtools/lib 2022-03-01T13:56:42,395 copying src/blobtools/lib/validate.py -> build/lib/blobtools/lib 2022-03-01T13:56:42,399 copying src/blobtools/lib/version.py -> build/lib/blobtools/lib 2022-03-01T13:56:42,402 copying src/blobtools/lib/hits.py -> build/lib/blobtools/lib 2022-03-01T13:56:42,408 copying src/blobtools/lib/link.py -> build/lib/blobtools/lib 2022-03-01T13:56:42,411 copying src/blobtools/lib/remove.py -> build/lib/blobtools/lib 2022-03-01T13:56:42,415 copying src/blobtools/lib/synonyms.py -> build/lib/blobtools/lib 2022-03-01T13:56:42,419 copying src/blobtools/lib/bed.py -> build/lib/blobtools/lib 2022-03-01T13:56:42,424 copying src/blobtools/lib/taxdump.py -> build/lib/blobtools/lib 2022-03-01T13:56:42,427 copying src/blobtools/lib/host.py -> build/lib/blobtools/lib 2022-03-01T13:56:42,431 copying src/blobtools/lib/file_io.py -> build/lib/blobtools/lib 2022-03-01T13:56:42,435 copying src/blobtools/lib/view.py -> build/lib/blobtools/lib 2022-03-01T13:56:42,439 copying src/blobtools/lib/fasta.py -> build/lib/blobtools/lib 2022-03-01T13:56:42,443 copying src/blobtools/lib/field.py -> build/lib/blobtools/lib 2022-03-01T13:56:42,448 copying src/blobtools/lib/taxid.py -> build/lib/blobtools/lib 2022-03-01T13:56:42,452 copying src/blobtools/lib/key.py -> build/lib/blobtools/lib 2022-03-01T13:56:42,458 creating build/lib/btk_pipeline/lib 2022-03-01T13:56:42,459 copying src/btk_pipeline/lib/__init__.py -> build/lib/btk_pipeline/lib 2022-03-01T13:56:42,462 copying src/btk_pipeline/lib/chunk_fasta.py -> build/lib/btk_pipeline/lib 2022-03-01T13:56:42,467 copying src/btk_pipeline/lib/functions.py -> build/lib/btk_pipeline/lib 2022-03-01T13:56:42,470 copying src/btk_pipeline/lib/run.py -> build/lib/btk_pipeline/lib 2022-03-01T13:56:42,474 copying src/btk_pipeline/lib/window_stats.py -> build/lib/btk_pipeline/lib 2022-03-01T13:56:42,478 copying src/btk_pipeline/lib/data.py -> build/lib/btk_pipeline/lib 2022-03-01T13:56:42,481 copying src/btk_pipeline/lib/extract_busco_genes.py -> build/lib/btk_pipeline/lib 2022-03-01T13:56:42,484 copying src/btk_pipeline/lib/generate_static_images.py -> build/lib/btk_pipeline/lib 2022-03-01T13:56:42,488 copying src/btk_pipeline/lib/unchunk_blast.py -> build/lib/btk_pipeline/lib 2022-03-01T13:56:42,491 copying src/btk_pipeline/lib/version.py -> build/lib/btk_pipeline/lib 2022-03-01T13:56:42,494 copying src/btk_pipeline/lib/add_summary_to_metadata.py -> build/lib/btk_pipeline/lib 2022-03-01T13:56:42,498 copying src/btk_pipeline/lib/generate_config.py -> build/lib/btk_pipeline/lib 2022-03-01T13:56:42,503 copying src/btk_pipeline/lib/track_bioproject_accessions.py -> build/lib/btk_pipeline/lib 2022-03-01T13:56:42,506 copying src/btk_pipeline/lib/transfer_completed.py -> build/lib/btk_pipeline/lib 2022-03-01T13:56:42,510 copying src/btk_pipeline/lib/count_busco_genes.py -> build/lib/btk_pipeline/lib 2022-03-01T13:56:42,513 running egg_info 2022-03-01T13:56:42,583 warning: no previously-included files found matching '.gitignore' 2022-03-01T13:56:42,585 warning: no previously-included files found matching '.coverage' 2022-03-01T13:56:42,586 warning: no previously-included files found matching '.travis.yml' 2022-03-01T13:56:42,587 no previously-included directories found matching '.cache' 2022-03-01T13:56:42,589 no previously-included directories found matching '.git' 2022-03-01T13:56:42,590 no previously-included directories found matching 'build' 2022-03-01T13:56:42,591 no previously-included directories found matching 'dist' 2022-03-01T13:56:42,593 warning: no previously-included files matching '*' found under directory '*.egg-info' 2022-03-01T13:56:42,594 warning: no previously-included files matching '*' found under directory 'tests' 2022-03-01T13:56:42,596 warning: no previously-included files matching '*' found under directory 'conda-recipe' 2022-03-01T13:56:42,598 warning: no previously-included files matching '*' found under directory 'ci' 2022-03-01T13:56:42,598 warning: no previously-included files matching '*' found under directory 'tests' 2022-03-01T13:56:42,778 writing manifest file 'src/blobtoolkit.egg-info/SOURCES.txt' 2022-03-01T13:56:42,811 creating build/lib/blobtools/bin 2022-03-01T13:56:42,812 copying src/blobtools/bin/blobtoolkit-api-linux -> build/lib/blobtools/bin 2022-03-01T13:56:45,522 copying src/blobtools/bin/blobtoolkit-viewer-linux -> build/lib/blobtools/bin 2022-03-01T13:56:47,795 creating build/lib/blobtools/example 2022-03-01T13:56:47,796 creating build/lib/blobtools/example/FXWY01 2022-03-01T13:56:47,799 copying src/blobtools/example/FXWY01/ERR1656467_cov.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:47,804 copying src/blobtools/example/FXWY01/ERR1656467_read_cov.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:47,808 copying src/blobtools/example/FXWY01/bestsumorder_class.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:47,813 copying src/blobtools/example/FXWY01/bestsumorder_class_cindex.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:47,818 copying src/blobtools/example/FXWY01/bestsumorder_class_positions.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:47,837 copying src/blobtools/example/FXWY01/bestsumorder_class_score.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:47,841 copying src/blobtools/example/FXWY01/bestsumorder_family.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:47,845 copying src/blobtools/example/FXWY01/bestsumorder_family_cindex.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:47,849 copying src/blobtools/example/FXWY01/bestsumorder_family_positions.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:47,870 copying src/blobtools/example/FXWY01/bestsumorder_family_score.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:47,874 copying src/blobtools/example/FXWY01/bestsumorder_genus.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:47,878 copying src/blobtools/example/FXWY01/bestsumorder_genus_cindex.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:47,882 copying src/blobtools/example/FXWY01/bestsumorder_genus_positions.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:47,901 copying src/blobtools/example/FXWY01/bestsumorder_genus_score.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:47,906 copying src/blobtools/example/FXWY01/bestsumorder_kingdom.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:47,910 copying src/blobtools/example/FXWY01/bestsumorder_kingdom_cindex.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:47,914 copying src/blobtools/example/FXWY01/bestsumorder_kingdom_positions.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:47,934 copying src/blobtools/example/FXWY01/bestsumorder_kingdom_score.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:47,938 copying src/blobtools/example/FXWY01/bestsumorder_order.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:47,942 copying src/blobtools/example/FXWY01/bestsumorder_order_cindex.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:47,945 copying src/blobtools/example/FXWY01/bestsumorder_order_positions.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:47,965 copying src/blobtools/example/FXWY01/bestsumorder_order_score.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:47,968 copying src/blobtools/example/FXWY01/bestsumorder_phylum.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:47,972 copying src/blobtools/example/FXWY01/bestsumorder_phylum_cindex.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:47,976 copying src/blobtools/example/FXWY01/bestsumorder_phylum_positions.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:47,994 copying src/blobtools/example/FXWY01/bestsumorder_phylum_score.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:47,998 copying src/blobtools/example/FXWY01/bestsumorder_positions.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:48,018 copying src/blobtools/example/FXWY01/bestsumorder_species.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:48,021 copying src/blobtools/example/FXWY01/bestsumorder_species_cindex.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:48,025 copying src/blobtools/example/FXWY01/bestsumorder_species_positions.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:48,045 copying src/blobtools/example/FXWY01/bestsumorder_species_score.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:48,049 copying src/blobtools/example/FXWY01/bestsumorder_superkingdom.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:48,053 copying src/blobtools/example/FXWY01/bestsumorder_superkingdom_cindex.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:48,058 copying src/blobtools/example/FXWY01/bestsumorder_superkingdom_positions.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:48,077 copying src/blobtools/example/FXWY01/bestsumorder_superkingdom_score.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:48,080 copying src/blobtools/example/FXWY01/eukaryota_odb9_busco.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:48,086 copying src/blobtools/example/FXWY01/gc.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:48,090 copying src/blobtools/example/FXWY01/identifiers.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:48,094 copying src/blobtools/example/FXWY01/length.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:48,099 copying src/blobtools/example/FXWY01/meta.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:48,105 copying src/blobtools/example/FXWY01/metazoa_odb9_busco.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:48,111 copying src/blobtools/example/FXWY01/ncount.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:48,116 copying src/blobtools/example/FXWY01/nematoda_odb9_busco.json -> build/lib/blobtools/example/FXWY01 2022-03-01T13:56:48,123 creating build/lib/blobtools/schema 2022-03-01T13:56:48,124 copying src/blobtools/schema/basic.schema.json -> build/lib/blobtools/schema 2022-03-01T13:56:48,128 copying src/blobtools/schema/meta.schema.json -> build/lib/blobtools/schema 2022-03-01T13:56:48,132 creating build/lib/blobtools/schema/subschemas 2022-03-01T13:56:48,134 copying src/blobtools/schema/subschemas/array.data.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T13:56:48,138 copying src/blobtools/schema/subschemas/array.meta.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T13:56:48,142 copying src/blobtools/schema/subschemas/assembly.basic.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T13:56:48,146 copying src/blobtools/schema/subschemas/assembly.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T13:56:48,150 copying src/blobtools/schema/subschemas/category.data.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T13:56:48,154 copying src/blobtools/schema/subschemas/category.meta.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T13:56:48,157 copying src/blobtools/schema/subschemas/fields.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T13:56:48,161 copying src/blobtools/schema/subschemas/identifier.data.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T13:56:48,165 copying src/blobtools/schema/subschemas/identifier.meta.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T13:56:48,169 copying src/blobtools/schema/subschemas/multiarray.data.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T13:56:48,173 copying src/blobtools/schema/subschemas/multiarray.meta.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T13:56:48,177 copying src/blobtools/schema/subschemas/plot.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T13:56:48,181 copying src/blobtools/schema/subschemas/reads.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T13:56:48,185 copying src/blobtools/schema/subschemas/taxon.basic.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T13:56:48,189 copying src/blobtools/schema/subschemas/taxon.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T13:56:48,193 copying src/blobtools/schema/subschemas/variable.data.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T13:56:48,197 copying src/blobtools/schema/subschemas/variable.meta.schema.json -> build/lib/blobtools/schema/subschemas 2022-03-01T13:56:48,201 creating build/lib/btk/lib 2022-03-01T13:56:48,202 copying src/btk/lib/version.py -> build/lib/btk/lib 2022-03-01T13:56:48,207 copying src/btk_pipeline/add_reads.smk -> build/lib/btk_pipeline 2022-03-01T13:56:48,210 copying src/btk_pipeline/blastn.smk -> build/lib/btk_pipeline 2022-03-01T13:56:48,214 copying src/btk_pipeline/blobtoolkit.smk -> build/lib/btk_pipeline 2022-03-01T13:56:48,218 copying src/btk_pipeline/blobtools.smk -> build/lib/btk_pipeline 2022-03-01T13:56:48,222 copying src/btk_pipeline/busco.smk -> build/lib/btk_pipeline 2022-03-01T13:56:48,226 copying src/btk_pipeline/chunk_stats.smk -> build/lib/btk_pipeline 2022-03-01T13:56:48,229 copying src/btk_pipeline/cov_stats.smk -> build/lib/btk_pipeline 2022-03-01T13:56:48,233 copying src/btk_pipeline/diamond.smk -> build/lib/btk_pipeline 2022-03-01T13:56:48,237 copying src/btk_pipeline/diamond_blastp.smk -> build/lib/btk_pipeline 2022-03-01T13:56:48,241 copying src/btk_pipeline/minimap.smk -> build/lib/btk_pipeline 2022-03-01T13:56:48,245 copying src/btk_pipeline/view.smk -> build/lib/btk_pipeline 2022-03-01T13:56:48,249 copying src/btk_pipeline/window_stats.smk -> build/lib/btk_pipeline 2022-03-01T13:56:48,253 copying src/btk_pipeline/windowmasker.smk -> build/lib/btk_pipeline 2022-03-01T13:56:48,257 creating build/lib/btk_pipeline/rules 2022-03-01T13:56:48,258 copying src/btk_pipeline/rules/_transfer_dataset.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,262 copying src/btk_pipeline/rules/add_cov_to_tsv.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,266 copying src/btk_pipeline/rules/add_summary_to_metadata.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,270 copying src/btk_pipeline/rules/checksum_files.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,274 copying src/btk_pipeline/rules/chunk_fasta.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,278 copying src/btk_pipeline/rules/chunk_fasta_by_busco.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,281 copying src/btk_pipeline/rules/chunk_nohit_fasta.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,285 copying src/btk_pipeline/rules/combine_stats.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,289 copying src/btk_pipeline/rules/count_busco_genes.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,293 copying src/btk_pipeline/rules/extract_busco_genes.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,297 copying src/btk_pipeline/rules/extract_nohit_fasta.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,301 copying src/btk_pipeline/rules/generate_images.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,305 copying src/btk_pipeline/rules/generate_summary.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,309 copying src/btk_pipeline/rules/get_chunked_stats.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,313 copying src/btk_pipeline/rules/get_window_stats.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,317 copying src/btk_pipeline/rules/run_bamtools_stats.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,320 copying src/btk_pipeline/rules/run_blastn.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,324 copying src/btk_pipeline/rules/run_blobtools_add.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,328 copying src/btk_pipeline/rules/run_blobtools_create.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,332 copying src/btk_pipeline/rules/run_busco5.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,336 copying src/btk_pipeline/rules/run_diamond_blastp.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,340 copying src/btk_pipeline/rules/run_diamond_blastx.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,344 copying src/btk_pipeline/rules/run_minimap2_align.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,347 copying src/btk_pipeline/rules/run_minimap2_index.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,351 copying src/btk_pipeline/rules/run_mosdepth.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,355 copying src/btk_pipeline/rules/run_sub_pipeline.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,359 copying src/btk_pipeline/rules/run_windowmasker.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,363 copying src/btk_pipeline/rules/unchunk_blastn.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,367 copying src/btk_pipeline/rules/unchunk_blastx.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,370 copying src/btk_pipeline/rules/unzip_assembly_fasta.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,375 copying src/btk_pipeline/rules/validate_dataset.smk -> build/lib/btk_pipeline/rules 2022-03-01T13:56:48,379 copying src/btk_pipeline/lib/generate_configs.sh -> build/lib/btk_pipeline/lib 2022-03-01T13:56:48,382 copying src/btk_pipeline/lib/lsf_wrapper.sh -> build/lib/btk_pipeline/lib 2022-03-01T13:56:48,386 copying src/btk_pipeline/lib/run_btk_pipeline.sh -> build/lib/btk_pipeline/lib 2022-03-01T13:56:48,418 running install 2022-03-01T13:56:48,482 running install_lib 2022-03-01T13:56:48,489 creating build/bdist.linux-armv7l 2022-03-01T13:56:48,490 creating build/bdist.linux-armv7l/wheel 2022-03-01T13:56:48,493 creating build/bdist.linux-armv7l/wheel/blobtools 2022-03-01T13:56:48,496 creating build/bdist.linux-armv7l/wheel/blobtools/bin 2022-03-01T13:56:52,327 creating build/bdist.linux-armv7l/wheel/blobtools/example 2022-03-01T13:56:52,331 creating build/bdist.linux-armv7l/wheel/blobtools/example/FXWY01 2022-03-01T13:56:52,631 creating build/bdist.linux-armv7l/wheel/blobtools/lib 2022-03-01T13:56:52,731 creating build/bdist.linux-armv7l/wheel/blobtools/schema 2022-03-01T13:56:52,740 creating build/bdist.linux-armv7l/wheel/blobtools/schema/subschemas 2022-03-01T13:56:52,794 creating build/bdist.linux-armv7l/wheel/btk 2022-03-01T13:56:52,800 creating build/bdist.linux-armv7l/wheel/btk/lib 2022-03-01T13:56:52,812 creating build/bdist.linux-armv7l/wheel/btk_pipeline 2022-03-01T13:56:52,829 creating build/bdist.linux-armv7l/wheel/btk_pipeline/rules 2022-03-01T13:56:52,951 creating build/bdist.linux-armv7l/wheel/btk_pipeline/lib 2022-03-01T13:56:53,043 running install_egg_info 2022-03-01T13:56:53,059 Copying src/blobtoolkit.egg-info to build/bdist.linux-armv7l/wheel/blobtoolkit-3.1.0-py3.7.egg-info 2022-03-01T13:56:53,087 running install_scripts 2022-03-01T13:57:38,628 Building wheel for blobtoolkit (pyproject.toml): finished with status 'done' 2022-03-01T13:57:41,515 Created wheel for blobtoolkit: filename=blobtoolkit-3.1.0-py3-none-any.whl size=50168845 sha256=e788f114f18a23900a7150d0ea4932e5dba71126de9dd79d7880941298300f9c 2022-03-01T13:57:41,517 Stored in directory: /tmp/pip-ephem-wheel-cache-6qsuwdjv/wheels/5c/30/8c/3f1d8487521dc5f2d54b928e08ffe480574f27d50de2f65ea2 2022-03-01T13:57:41,612 Successfully built blobtoolkit 2022-03-01T13:57:45,454 Removed build tracker: '/tmp/pip-req-tracker-10ib949x'