2022-03-08T20:38:23,130 Created temporary directory: /tmp/pip-ephem-wheel-cache-zmgkngv3
2022-03-08T20:38:23,136 Created temporary directory: /tmp/pip-req-tracker-gpk365lh
2022-03-08T20:38:23,136 Initialized build tracking at /tmp/pip-req-tracker-gpk365lh
2022-03-08T20:38:23,137 Created build tracker: /tmp/pip-req-tracker-gpk365lh
2022-03-08T20:38:23,137 Entered build tracker: /tmp/pip-req-tracker-gpk365lh
2022-03-08T20:38:23,138 Created temporary directory: /tmp/pip-wheel-8d1bseg5
2022-03-08T20:38:23,200 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-03-08T20:38:23,209 2 location(s) to search for versions of repair-seq:
2022-03-08T20:38:23,209 * https://pypi.org/simple/repair-seq/
2022-03-08T20:38:23,209 * https://www.piwheels.org/simple/repair-seq/
2022-03-08T20:38:23,210 Fetching project page and analyzing links: https://pypi.org/simple/repair-seq/
2022-03-08T20:38:23,212 Getting page https://pypi.org/simple/repair-seq/
2022-03-08T20:38:23,215 Found index url https://pypi.org/simple
2022-03-08T20:38:23,324   Found link https://files.pythonhosted.org/packages/c4/05/0451dabc5e138dfe012fe7aeb8080e24951f88bb079c213d7f3b8be08df0/repair_seq-1.0.2.tar.gz#sha256=8ecf1dfa5193c5dafa29f2e2731d781c42195e33275edbacc167889de5f62e03 (from https://pypi.org/simple/repair-seq/) (requires-python:>=3.6), version: 1.0.2
2022-03-08T20:38:23,326   Found link https://files.pythonhosted.org/packages/91/2b/9a0f370071e707794de9e2647dcfa2f83a07d64dd750eb29cf8bce55e738/repair_seq-1.0.3.tar.gz#sha256=b2f3d2376bd02a2a4af80f195144405b8337940c7f511429de43aeaa809d9560 (from https://pypi.org/simple/repair-seq/) (requires-python:>=3.7), version: 1.0.3
2022-03-08T20:38:23,326 Fetching project page and analyzing links: https://www.piwheels.org/simple/repair-seq/
2022-03-08T20:38:23,327 Getting page https://www.piwheels.org/simple/repair-seq/
2022-03-08T20:38:23,329 Found index url https://www.piwheels.org/simple
2022-03-08T20:38:23,542   Skipping link: No binaries permitted for repair-seq: https://www.piwheels.org/simple/repair-seq/repair_seq-1.0.2-cp37-cp37m-linux_armv6l.whl#sha256=3234e29f279366df4210cdd49f2c59263c1fc2e1284cb0f4eb70e91d6dfc0797 (from https://www.piwheels.org/simple/repair-seq/) (requires-python:>=3.6)
2022-03-08T20:38:23,543   Skipping link: No binaries permitted for repair-seq: https://www.piwheels.org/simple/repair-seq/repair_seq-1.0.2-cp37-cp37m-linux_armv7l.whl#sha256=3234e29f279366df4210cdd49f2c59263c1fc2e1284cb0f4eb70e91d6dfc0797 (from https://www.piwheels.org/simple/repair-seq/) (requires-python:>=3.6)
2022-03-08T20:38:23,544   Skipping link: No binaries permitted for repair-seq: https://www.piwheels.org/simple/repair-seq/repair_seq-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=77d8227261c96e181117919c2fc01cfd35b941c17c4588852e859c982c3c09aa (from https://www.piwheels.org/simple/repair-seq/) (requires-python:>=3.6)
2022-03-08T20:38:23,544   Skipping link: No binaries permitted for repair-seq: https://www.piwheels.org/simple/repair-seq/repair_seq-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=77d8227261c96e181117919c2fc01cfd35b941c17c4588852e859c982c3c09aa (from https://www.piwheels.org/simple/repair-seq/) (requires-python:>=3.6)
2022-03-08T20:38:23,545 Skipping link: not a file: https://www.piwheels.org/simple/repair-seq/
2022-03-08T20:38:23,545 Skipping link: not a file: https://pypi.org/simple/repair-seq/
2022-03-08T20:38:23,579 Given no hashes to check 1 links for project 'repair-seq': discarding no candidates
2022-03-08T20:38:23,610 Collecting repair-seq==1.0.3
2022-03-08T20:38:23,614   Created temporary directory: /tmp/pip-unpack-yj8tuulu
2022-03-08T20:38:24,286   Downloading repair_seq-1.0.3.tar.gz (1.4 MB)
2022-03-08T20:38:25,785   Added repair-seq==1.0.3 from https://files.pythonhosted.org/packages/91/2b/9a0f370071e707794de9e2647dcfa2f83a07d64dd750eb29cf8bce55e738/repair_seq-1.0.3.tar.gz#sha256=b2f3d2376bd02a2a4af80f195144405b8337940c7f511429de43aeaa809d9560 to build tracker '/tmp/pip-req-tracker-gpk365lh'
2022-03-08T20:38:25,786   Running setup.py (path:/tmp/pip-wheel-8d1bseg5/repair-seq_c41f5c5dff6f492393f8c6518940c934/setup.py) egg_info for package repair-seq
2022-03-08T20:38:25,788   Created temporary directory: /tmp/pip-pip-egg-info-wwhd2vi4
2022-03-08T20:38:25,788   Preparing metadata (setup.py): started
2022-03-08T20:38:25,791   Running command python setup.py egg_info
2022-03-08T20:38:27,821   running egg_info
2022-03-08T20:38:27,827   creating /tmp/pip-pip-egg-info-wwhd2vi4/repair_seq.egg-info
2022-03-08T20:38:27,840   writing manifest file '/tmp/pip-pip-egg-info-wwhd2vi4/repair_seq.egg-info/SOURCES.txt'
2022-03-08T20:38:27,862   package init file 'repair_seq/test/__init__.py' not found (or not a regular file)
2022-03-08T20:38:28,279   writing manifest file '/tmp/pip-pip-egg-info-wwhd2vi4/repair_seq.egg-info/SOURCES.txt'
2022-03-08T20:38:28,422   Preparing metadata (setup.py): finished with status 'done'
2022-03-08T20:38:28,432   Source in /tmp/pip-wheel-8d1bseg5/repair-seq_c41f5c5dff6f492393f8c6518940c934 has version 1.0.3, which satisfies requirement repair-seq==1.0.3 from https://files.pythonhosted.org/packages/91/2b/9a0f370071e707794de9e2647dcfa2f83a07d64dd750eb29cf8bce55e738/repair_seq-1.0.3.tar.gz#sha256=b2f3d2376bd02a2a4af80f195144405b8337940c7f511429de43aeaa809d9560
2022-03-08T20:38:28,434   Removed repair-seq==1.0.3 from https://files.pythonhosted.org/packages/91/2b/9a0f370071e707794de9e2647dcfa2f83a07d64dd750eb29cf8bce55e738/repair_seq-1.0.3.tar.gz#sha256=b2f3d2376bd02a2a4af80f195144405b8337940c7f511429de43aeaa809d9560 from build tracker '/tmp/pip-req-tracker-gpk365lh'
2022-03-08T20:38:28,447 Created temporary directory: /tmp/pip-unpack-jusonikf
2022-03-08T20:38:28,448 Building wheels for collected packages: repair-seq
2022-03-08T20:38:28,457   Created temporary directory: /tmp/pip-wheel-dcdkysck
2022-03-08T20:38:28,458   Building wheel for repair-seq (setup.py): started
2022-03-08T20:38:28,460   Destination directory: /tmp/pip-wheel-dcdkysck
2022-03-08T20:38:28,460   Running command python setup.py bdist_wheel
2022-03-08T20:38:30,481   running bdist_wheel
2022-03-08T20:38:30,489   running build
2022-03-08T20:38:30,490   running build_py
2022-03-08T20:38:30,501   creating build
2022-03-08T20:38:30,502   creating build/lib.linux-armv7l-3.7
2022-03-08T20:38:30,503   creating build/lib.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:30,505   copying repair_seq/perturb_seq.py -> build/lib.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:30,510   copying repair_seq/coherence.py -> build/lib.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:30,513   copying repair_seq/pooled_screen.py -> build/lib.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:30,524   copying repair_seq/__init__.py -> build/lib.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:30,527   copying repair_seq/experiment_group.py -> build/lib.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:30,531   copying repair_seq/build_guide_specific_targets.py -> build/lib.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:30,535   copying repair_seq/demux_arrayed_experiments.py -> build/lib.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:30,538   copying repair_seq/common_sequences.py -> build/lib.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:30,542   copying repair_seq/demux_gDNA.py -> build/lib.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:30,546   copying repair_seq/prime_editing_experiment.py -> build/lib.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:30,550   copying repair_seq/replicates.py -> build/lib.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:30,556   copying repair_seq/single_end_experiment.py -> build/lib.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:30,559   copying repair_seq/twin_prime_layout.py -> build/lib.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:30,564   copying repair_seq/bootstrapper.py -> build/lib.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:30,567   copying repair_seq/statistics.py -> build/lib.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:30,570   copying repair_seq/collapse.py -> build/lib.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:30,574   copying repair_seq/convert_outcomes.py -> build/lib.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:30,578   copying repair_seq/quantiles.py -> build/lib.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:30,582   copying repair_seq/arrayed_experiment_group.py -> build/lib.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:30,589   copying repair_seq/demux.py -> build/lib.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:30,594   copying repair_seq/pooled_layout.py -> build/lib.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:30,603   copying repair_seq/paired_end_experiment.py -> build/lib.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:30,606   copying repair_seq/demux_for_SRA.py -> build/lib.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:30,609   copying repair_seq/guide_library.py -> build/lib.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:30,613   copying repair_seq/prime_editing_layout.py -> build/lib.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:30,625   copying repair_seq/base_editor.py -> build/lib.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:30,628   copying repair_seq/beta_binomial.py -> build/lib.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:30,633   copying repair_seq/cluster.py -> build/lib.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:30,641   creating build/lib.linux-armv7l-3.7/repair_seq/visualize
2022-03-08T20:38:30,642   copying repair_seq/visualize/outcome_diagrams.py -> build/lib.linux-armv7l-3.7/repair_seq/visualize
2022-03-08T20:38:30,648   copying repair_seq/visualize/heatmap.py -> build/lib.linux-armv7l-3.7/repair_seq/visualize
2022-03-08T20:38:30,656   copying repair_seq/visualize/__init__.py -> build/lib.linux-armv7l-3.7/repair_seq/visualize
2022-03-08T20:38:30,659   copying repair_seq/visualize/gene_significance.py -> build/lib.linux-armv7l-3.7/repair_seq/visualize
2022-03-08T20:38:30,665   copying repair_seq/visualize/volcano.py -> build/lib.linux-armv7l-3.7/repair_seq/visualize
2022-03-08T20:38:30,668   copying repair_seq/visualize/scratch.py -> build/lib.linux-armv7l-3.7/repair_seq/visualize
2022-03-08T20:38:30,675   copying repair_seq/visualize/scatter.py -> build/lib.linux-armv7l-3.7/repair_seq/visualize
2022-03-08T20:38:30,680   copying repair_seq/visualize/clustermap.py -> build/lib.linux-armv7l-3.7/repair_seq/visualize
2022-03-08T20:38:30,685   copying repair_seq/visualize/conversion_tracts.py -> build/lib.linux-armv7l-3.7/repair_seq/visualize
2022-03-08T20:38:30,689   copying repair_seq/visualize/templated_insertions.py -> build/lib.linux-armv7l-3.7/repair_seq/visualize
2022-03-08T20:38:30,693   package init file 'repair_seq/test/__init__.py' not found (or not a regular file)
2022-03-08T20:38:30,695   creating build/lib.linux-armv7l-3.7/repair_seq/test
2022-03-08T20:38:30,696   copying repair_seq/test/test_pegRNAs.py -> build/lib.linux-armv7l-3.7/repair_seq/test
2022-03-08T20:38:30,699   copying repair_seq/test/test_read_sets.py -> build/lib.linux-armv7l-3.7/repair_seq/test
2022-03-08T20:38:30,703   copying repair_seq/test/build_read_sets.py -> build/lib.linux-armv7l-3.7/repair_seq/test
2022-03-08T20:38:30,714   running build_ext
2022-03-08T20:38:38,614   creating build/temp.linux-armv7l-3.7
2022-03-08T20:38:38,615   creating build/temp.linux-armv7l-3.7/repair_seq
2022-03-08T20:38:38,617   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -I/usr/include/python3.7m -c repair_seq/collapse_cython.c -o build/temp.linux-armv7l-3.7/repair_seq/collapse_cython.o
2022-03-08T20:39:09,493   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-armv7l-3.7/repair_seq/collapse_cython.o -L/usr/lib -o build/lib.linux-armv7l-3.7/repair_seq/collapse_cython.cpython-37m-arm-linux-gnueabihf.so
2022-03-08T20:39:31,581   running build_scripts
2022-03-08T20:39:31,582   creating build/scripts-3.7
2022-03-08T20:39:31,607   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-03-08T20:39:31,607     setuptools.SetuptoolsDeprecationWarning,
2022-03-08T20:39:31,612   running install
2022-03-08T20:39:31,676   running install_lib
2022-03-08T20:39:31,683   creating build/bdist.linux-armv7l
2022-03-08T20:39:31,684   creating build/bdist.linux-armv7l/wheel
2022-03-08T20:39:31,688   creating build/bdist.linux-armv7l/wheel/repair_seq
2022-03-08T20:39:31,696   creating build/bdist.linux-armv7l/wheel/repair_seq/test
2022-03-08T20:39:31,846   creating build/bdist.linux-armv7l/wheel/repair_seq/visualize
2022-03-08T20:39:31,906   running install_egg_info
2022-03-08T20:39:31,954   running egg_info
2022-03-08T20:39:32,040   writing manifest file 'repair_seq.egg-info/SOURCES.txt'
2022-03-08T20:39:32,044   Copying repair_seq.egg-info to build/bdist.linux-armv7l/wheel/repair_seq-1.0.3-py3.7.egg-info
2022-03-08T20:39:32,064   running install_scripts
2022-03-08T20:39:32,120   creating build/bdist.linux-armv7l/wheel/repair_seq-1.0.3.data
2022-03-08T20:39:32,121   creating build/bdist.linux-armv7l/wheel/repair_seq-1.0.3.data/scripts
2022-03-08T20:39:33,262   Building wheel for repair-seq (setup.py): finished with status 'done'
2022-03-08T20:39:33,279   Created wheel for repair-seq: filename=repair_seq-1.0.3-cp37-cp37m-linux_armv7l.whl size=319298 sha256=92ee99fae5831b1cbf0488ecf1a8c56e0e99518c95e27d34863ad531d7cdc6a6
2022-03-08T20:39:33,282   Stored in directory: /tmp/pip-ephem-wheel-cache-zmgkngv3/wheels/f8/1c/9f/238ac3280348077ef83c1679f9b2f00e549dade9c1140a4032
2022-03-08T20:39:33,306 Successfully built repair-seq
2022-03-08T20:39:33,338 Removed build tracker: '/tmp/pip-req-tracker-gpk365lh'