2022-03-08T20:47:19,862 Created temporary directory: /tmp/pip-ephem-wheel-cache-t3cifzv1
2022-03-08T20:47:19,868 Created temporary directory: /tmp/pip-req-tracker-pp3s42bz
2022-03-08T20:47:19,869 Initialized build tracking at /tmp/pip-req-tracker-pp3s42bz
2022-03-08T20:47:19,869 Created build tracker: /tmp/pip-req-tracker-pp3s42bz
2022-03-08T20:47:19,869 Entered build tracker: /tmp/pip-req-tracker-pp3s42bz
2022-03-08T20:47:19,871 Created temporary directory: /tmp/pip-wheel-sojh4edv
2022-03-08T20:47:19,944 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-03-08T20:47:19,952 2 location(s) to search for versions of repair-seq:
2022-03-08T20:47:19,952 * https://pypi.org/simple/repair-seq/
2022-03-08T20:47:19,952 * https://www.piwheels.org/simple/repair-seq/
2022-03-08T20:47:19,953 Fetching project page and analyzing links: https://pypi.org/simple/repair-seq/
2022-03-08T20:47:19,954 Getting page https://pypi.org/simple/repair-seq/
2022-03-08T20:47:19,957 Found index url https://pypi.org/simple
2022-03-08T20:47:20,074   Found link https://files.pythonhosted.org/packages/c4/05/0451dabc5e138dfe012fe7aeb8080e24951f88bb079c213d7f3b8be08df0/repair_seq-1.0.2.tar.gz#sha256=8ecf1dfa5193c5dafa29f2e2731d781c42195e33275edbacc167889de5f62e03 (from https://pypi.org/simple/repair-seq/) (requires-python:>=3.6), version: 1.0.2
2022-03-08T20:47:20,075   Found link https://files.pythonhosted.org/packages/91/2b/9a0f370071e707794de9e2647dcfa2f83a07d64dd750eb29cf8bce55e738/repair_seq-1.0.3.tar.gz#sha256=b2f3d2376bd02a2a4af80f195144405b8337940c7f511429de43aeaa809d9560 (from https://pypi.org/simple/repair-seq/) (requires-python:>=3.7), version: 1.0.3
2022-03-08T20:47:20,076 Fetching project page and analyzing links: https://www.piwheels.org/simple/repair-seq/
2022-03-08T20:47:20,077 Getting page https://www.piwheels.org/simple/repair-seq/
2022-03-08T20:47:20,079 Found index url https://www.piwheels.org/simple
2022-03-08T20:47:20,353   Skipping link: No binaries permitted for repair-seq: https://www.piwheels.org/simple/repair-seq/repair_seq-1.0.2-cp37-cp37m-linux_armv6l.whl#sha256=3234e29f279366df4210cdd49f2c59263c1fc2e1284cb0f4eb70e91d6dfc0797 (from https://www.piwheels.org/simple/repair-seq/) (requires-python:>=3.6)
2022-03-08T20:47:20,353   Skipping link: No binaries permitted for repair-seq: https://www.piwheels.org/simple/repair-seq/repair_seq-1.0.2-cp37-cp37m-linux_armv7l.whl#sha256=3234e29f279366df4210cdd49f2c59263c1fc2e1284cb0f4eb70e91d6dfc0797 (from https://www.piwheels.org/simple/repair-seq/) (requires-python:>=3.6)
2022-03-08T20:47:20,354   Skipping link: No binaries permitted for repair-seq: https://www.piwheels.org/simple/repair-seq/repair_seq-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=77d8227261c96e181117919c2fc01cfd35b941c17c4588852e859c982c3c09aa (from https://www.piwheels.org/simple/repair-seq/) (requires-python:>=3.6)
2022-03-08T20:47:20,354   Skipping link: No binaries permitted for repair-seq: https://www.piwheels.org/simple/repair-seq/repair_seq-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=77d8227261c96e181117919c2fc01cfd35b941c17c4588852e859c982c3c09aa (from https://www.piwheels.org/simple/repair-seq/) (requires-python:>=3.6)
2022-03-08T20:47:20,355   Skipping link: No binaries permitted for repair-seq: https://www.piwheels.org/simple/repair-seq/repair_seq-1.0.3-cp37-cp37m-linux_armv6l.whl#sha256=92ee99fae5831b1cbf0488ecf1a8c56e0e99518c95e27d34863ad531d7cdc6a6 (from https://www.piwheels.org/simple/repair-seq/) (requires-python:>=3.7)
2022-03-08T20:47:20,355   Skipping link: No binaries permitted for repair-seq: https://www.piwheels.org/simple/repair-seq/repair_seq-1.0.3-cp37-cp37m-linux_armv7l.whl#sha256=92ee99fae5831b1cbf0488ecf1a8c56e0e99518c95e27d34863ad531d7cdc6a6 (from https://www.piwheels.org/simple/repair-seq/) (requires-python:>=3.7)
2022-03-08T20:47:20,356 Skipping link: not a file: https://www.piwheels.org/simple/repair-seq/
2022-03-08T20:47:20,356 Skipping link: not a file: https://pypi.org/simple/repair-seq/
2022-03-08T20:47:20,400 Given no hashes to check 1 links for project 'repair-seq': discarding no candidates
2022-03-08T20:47:20,440 Collecting repair-seq==1.0.3
2022-03-08T20:47:20,445   Created temporary directory: /tmp/pip-unpack-ij699dai
2022-03-08T20:47:20,537   Downloading repair_seq-1.0.3.tar.gz (1.4 MB)
2022-03-08T20:47:21,957   Added repair-seq==1.0.3 from https://files.pythonhosted.org/packages/91/2b/9a0f370071e707794de9e2647dcfa2f83a07d64dd750eb29cf8bce55e738/repair_seq-1.0.3.tar.gz#sha256=b2f3d2376bd02a2a4af80f195144405b8337940c7f511429de43aeaa809d9560 to build tracker '/tmp/pip-req-tracker-pp3s42bz'
2022-03-08T20:47:21,959   Running setup.py (path:/tmp/pip-wheel-sojh4edv/repair-seq_71209b09d83d43cca0de0b7404cd7ccf/setup.py) egg_info for package repair-seq
2022-03-08T20:47:21,960   Created temporary directory: /tmp/pip-pip-egg-info-0630_b9g
2022-03-08T20:47:21,961   Preparing metadata (setup.py): started
2022-03-08T20:47:21,963   Running command python setup.py egg_info
2022-03-08T20:47:23,873   running egg_info
2022-03-08T20:47:23,878   creating /tmp/pip-pip-egg-info-0630_b9g/repair_seq.egg-info
2022-03-08T20:47:23,890   writing manifest file '/tmp/pip-pip-egg-info-0630_b9g/repair_seq.egg-info/SOURCES.txt'
2022-03-08T20:47:23,913   package init file 'repair_seq/test/__init__.py' not found (or not a regular file)
2022-03-08T20:47:24,346   writing manifest file '/tmp/pip-pip-egg-info-0630_b9g/repair_seq.egg-info/SOURCES.txt'
2022-03-08T20:47:24,481   Preparing metadata (setup.py): finished with status 'done'
2022-03-08T20:47:24,491   Source in /tmp/pip-wheel-sojh4edv/repair-seq_71209b09d83d43cca0de0b7404cd7ccf has version 1.0.3, which satisfies requirement repair-seq==1.0.3 from https://files.pythonhosted.org/packages/91/2b/9a0f370071e707794de9e2647dcfa2f83a07d64dd750eb29cf8bce55e738/repair_seq-1.0.3.tar.gz#sha256=b2f3d2376bd02a2a4af80f195144405b8337940c7f511429de43aeaa809d9560
2022-03-08T20:47:24,493   Removed repair-seq==1.0.3 from https://files.pythonhosted.org/packages/91/2b/9a0f370071e707794de9e2647dcfa2f83a07d64dd750eb29cf8bce55e738/repair_seq-1.0.3.tar.gz#sha256=b2f3d2376bd02a2a4af80f195144405b8337940c7f511429de43aeaa809d9560 from build tracker '/tmp/pip-req-tracker-pp3s42bz'
2022-03-08T20:47:24,505 Created temporary directory: /tmp/pip-unpack-kpgm4tf6
2022-03-08T20:47:24,506 Building wheels for collected packages: repair-seq
2022-03-08T20:47:24,516   Created temporary directory: /tmp/pip-wheel-vdl42fo_
2022-03-08T20:47:24,516   Building wheel for repair-seq (setup.py): started
2022-03-08T20:47:24,518   Destination directory: /tmp/pip-wheel-vdl42fo_
2022-03-08T20:47:24,519   Running command python setup.py bdist_wheel
2022-03-08T20:47:26,465   running bdist_wheel
2022-03-08T20:47:26,841   running build
2022-03-08T20:47:26,841   running build_py
2022-03-08T20:47:26,855   creating build
2022-03-08T20:47:26,856   creating build/lib.linux-armv7l-3.9
2022-03-08T20:47:26,857   creating build/lib.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:26,859   copying repair_seq/cluster.py -> build/lib.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:26,865   copying repair_seq/pooled_screen.py -> build/lib.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:26,875   copying repair_seq/demux.py -> build/lib.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:26,880   copying repair_seq/demux_gDNA.py -> build/lib.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:26,885   copying repair_seq/quantiles.py -> build/lib.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:26,889   copying repair_seq/prime_editing_layout.py -> build/lib.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:26,899   copying repair_seq/single_end_experiment.py -> build/lib.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:26,903   copying repair_seq/demux_arrayed_experiments.py -> build/lib.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:26,907   copying repair_seq/demux_for_SRA.py -> build/lib.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:26,912   copying repair_seq/twin_prime_layout.py -> build/lib.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:26,917   copying repair_seq/paired_end_experiment.py -> build/lib.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:26,921   copying repair_seq/bootstrapper.py -> build/lib.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:26,925   copying repair_seq/beta_binomial.py -> build/lib.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:26,929   copying repair_seq/pooled_layout.py -> build/lib.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:26,939   copying repair_seq/guide_library.py -> build/lib.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:26,945   copying repair_seq/experiment_group.py -> build/lib.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:26,950   copying repair_seq/build_guide_specific_targets.py -> build/lib.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:26,956   copying repair_seq/__init__.py -> build/lib.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:26,960   copying repair_seq/convert_outcomes.py -> build/lib.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:26,965   copying repair_seq/common_sequences.py -> build/lib.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:26,969   copying repair_seq/prime_editing_experiment.py -> build/lib.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:26,974   copying repair_seq/perturb_seq.py -> build/lib.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:26,980   copying repair_seq/base_editor.py -> build/lib.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:26,984   copying repair_seq/collapse.py -> build/lib.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:26,990   copying repair_seq/arrayed_experiment_group.py -> build/lib.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:26,997   copying repair_seq/coherence.py -> build/lib.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:27,002   copying repair_seq/replicates.py -> build/lib.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:27,008   copying repair_seq/statistics.py -> build/lib.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:27,015   creating build/lib.linux-armv7l-3.9/repair_seq/visualize
2022-03-08T20:47:27,018   copying repair_seq/visualize/clustermap.py -> build/lib.linux-armv7l-3.9/repair_seq/visualize
2022-03-08T20:47:27,024   copying repair_seq/visualize/scatter.py -> build/lib.linux-armv7l-3.9/repair_seq/visualize
2022-03-08T20:47:27,031   copying repair_seq/visualize/scratch.py -> build/lib.linux-armv7l-3.9/repair_seq/visualize
2022-03-08T20:47:27,038   copying repair_seq/visualize/conversion_tracts.py -> build/lib.linux-armv7l-3.9/repair_seq/visualize
2022-03-08T20:47:27,044   copying repair_seq/visualize/gene_significance.py -> build/lib.linux-armv7l-3.9/repair_seq/visualize
2022-03-08T20:47:27,050   copying repair_seq/visualize/heatmap.py -> build/lib.linux-armv7l-3.9/repair_seq/visualize
2022-03-08T20:47:27,058   copying repair_seq/visualize/__init__.py -> build/lib.linux-armv7l-3.9/repair_seq/visualize
2022-03-08T20:47:27,063   copying repair_seq/visualize/outcome_diagrams.py -> build/lib.linux-armv7l-3.9/repair_seq/visualize
2022-03-08T20:47:27,070   copying repair_seq/visualize/templated_insertions.py -> build/lib.linux-armv7l-3.9/repair_seq/visualize
2022-03-08T20:47:27,075   copying repair_seq/visualize/volcano.py -> build/lib.linux-armv7l-3.9/repair_seq/visualize
2022-03-08T20:47:27,079   package init file 'repair_seq/test/__init__.py' not found (or not a regular file)
2022-03-08T20:47:27,082   creating build/lib.linux-armv7l-3.9/repair_seq/test
2022-03-08T20:47:27,084   copying repair_seq/test/build_read_sets.py -> build/lib.linux-armv7l-3.9/repair_seq/test
2022-03-08T20:47:27,089   copying repair_seq/test/test_read_sets.py -> build/lib.linux-armv7l-3.9/repair_seq/test
2022-03-08T20:47:27,093   copying repair_seq/test/test_pegRNAs.py -> build/lib.linux-armv7l-3.9/repair_seq/test
2022-03-08T20:47:27,104   running build_ext
2022-03-08T20:47:34,666   creating build/temp.linux-armv7l-3.9
2022-03-08T20:47:34,667   creating build/temp.linux-armv7l-3.9/repair_seq
2022-03-08T20:47:34,670   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c repair_seq/collapse_cython.c -o build/temp.linux-armv7l-3.9/repair_seq/collapse_cython.o
2022-03-08T20:48:05,837   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/repair_seq/collapse_cython.o -L/usr/lib -o build/lib.linux-armv7l-3.9/repair_seq/collapse_cython.cpython-39-arm-linux-gnueabihf.so
2022-03-08T20:48:06,199   running build_scripts
2022-03-08T20:48:06,201   creating build/scripts-3.9
2022-03-08T20:48:06,220   /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-03-08T20:48:06,220     warnings.warn(
2022-03-08T20:48:06,226   running install
2022-03-08T20:48:06,290   running install_lib
2022-03-08T20:48:06,298   creating build/bdist.linux-armv7l
2022-03-08T20:48:06,299   creating build/bdist.linux-armv7l/wheel
2022-03-08T20:48:06,303   creating build/bdist.linux-armv7l/wheel/repair_seq
2022-03-08T20:48:06,335   creating build/bdist.linux-armv7l/wheel/repair_seq/visualize
2022-03-08T20:48:06,512   creating build/bdist.linux-armv7l/wheel/repair_seq/test
2022-03-08T20:48:06,535   running install_egg_info
2022-03-08T20:48:06,578   running egg_info
2022-03-08T20:48:06,665   writing manifest file 'repair_seq.egg-info/SOURCES.txt'
2022-03-08T20:48:06,669   Copying repair_seq.egg-info to build/bdist.linux-armv7l/wheel/repair_seq-1.0.3-py3.9.egg-info
2022-03-08T20:48:06,689   running install_scripts
2022-03-08T20:48:06,758   creating build/bdist.linux-armv7l/wheel/repair_seq-1.0.3.data
2022-03-08T20:48:06,759   creating build/bdist.linux-armv7l/wheel/repair_seq-1.0.3.data/scripts
2022-03-08T20:48:08,215   Building wheel for repair-seq (setup.py): finished with status 'done'
2022-03-08T20:48:08,239   Created wheel for repair-seq: filename=repair_seq-1.0.3-cp39-cp39-linux_armv7l.whl size=532703 sha256=137466bd1946aa68c800c7f1e2ee0c6c5eb2f172e64628e3369f7e887934eaab
2022-03-08T20:48:08,241   Stored in directory: /tmp/pip-ephem-wheel-cache-t3cifzv1/wheels/8e/db/ec/d80cdf6933a70b897a1bd25b8d5dae142e1a79a6895aa27b43
2022-03-08T20:48:08,265 Successfully built repair-seq
2022-03-08T20:48:08,310 Removed build tracker: '/tmp/pip-req-tracker-pp3s42bz'