2022-03-09T00:55:59,807 Created temporary directory: /tmp/pip-ephem-wheel-cache-yi_kxcho
2022-03-09T00:55:59,812 Created temporary directory: /tmp/pip-req-tracker-m6b9bz0l
2022-03-09T00:55:59,813 Initialized build tracking at /tmp/pip-req-tracker-m6b9bz0l
2022-03-09T00:55:59,814 Created build tracker: /tmp/pip-req-tracker-m6b9bz0l
2022-03-09T00:55:59,814 Entered build tracker: /tmp/pip-req-tracker-m6b9bz0l
2022-03-09T00:55:59,815 Created temporary directory: /tmp/pip-wheel-nlcze6gv
2022-03-09T00:55:59,882 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-03-09T00:55:59,891 2 location(s) to search for versions of depht:
2022-03-09T00:55:59,891 * https://pypi.org/simple/depht/
2022-03-09T00:55:59,891 * https://www.piwheels.org/simple/depht/
2022-03-09T00:55:59,892 Fetching project page and analyzing links: https://pypi.org/simple/depht/
2022-03-09T00:55:59,893 Getting page https://pypi.org/simple/depht/
2022-03-09T00:55:59,897 Found index url https://pypi.org/simple
2022-03-09T00:56:00,011   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/19/72/fe63d35459233b43e179b3579a137c84b3586a1ec3f6674ce1340fadc2fc/depht-1.0.0-py3-none-any.whl#sha256=a375093b069cfcfc1a0d8cf6e37c3aecbc4b8cd717397b251190bf605d06a0a4 (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2022-03-09T00:56:00,012   Found link https://files.pythonhosted.org/packages/91/61/e0c3c1e725b4a281c087467594e908e0a46e1a91ec288ac09b22c4a4ac17/depht-1.0.0.tar.gz#sha256=73eb7bd7d32d52ae5e0bdb62d8ce17cf59d68d633805075a876d6f3cf85da123 (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.0.0
2022-03-09T00:56:00,013   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/3a/8d/e2d2dea7750112dc8b17f17828c6700755e580cfbfadbb6ca1f29cfba3b1/depht-1.0.1-py3-none-any.whl#sha256=93b59e25c7de78b41fa21c3af9a3348c5c69256786790c8b15937b9206cd8e6c (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2022-03-09T00:56:00,015   Found link https://files.pythonhosted.org/packages/39/4b/eda220e1c8d0f7fa2733a9ca9b4918e5ab3e61c8eae17fac32f8719f9e1d/depht-1.0.1.tar.gz#sha256=c623361560ccb615d9ec68467e99bac0e97dca43754d8e86a904ad940e6404a5 (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.0.1
2022-03-09T00:56:00,015   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/32/5e/b4a44d00807cb6ace2704a7bcb063535c0d55fd66876c9f0dfb969311c1f/depht-1.0.2-py3-none-any.whl#sha256=9aab1c0ae369d511c3f89a6a4491a7455ce30950f9406a53be0ffa305e31e6cc (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2022-03-09T00:56:00,017   Found link https://files.pythonhosted.org/packages/d9/e7/1db918963510d931b43704f804783319af47f7c82f5d9a2e53f6936bd67a/depht-1.0.2.tar.gz#sha256=ff8af7ddde50765d86c95835482160c536639f78ea0d6750c5a7bd08e1894654 (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.0.2
2022-03-09T00:56:00,017   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/8b/99/c44ff60e08d7f5708286fb26fc216d2f7ca4ff46fd19b9aa76bbc031a4ac/depht-1.1.1-py3-none-any.whl#sha256=a61b455fc299a29ecb09827e0433e93dcdbd1ca6ad616f0e4df8c456ba29841e (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2022-03-09T00:56:00,019   Found link https://files.pythonhosted.org/packages/cc/16/89e0098b689b09ff80d73950844760981a915f23f3cdb60e33b27ac96ad2/depht-1.1.1.tar.gz#sha256=e9636aee4923786ce7c0e086a7a619b32592ba06361a62ead0c00d472c16a948 (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.1.1
2022-03-09T00:56:00,020 Fetching project page and analyzing links: https://www.piwheels.org/simple/depht/
2022-03-09T00:56:00,020 Getting page https://www.piwheels.org/simple/depht/
2022-03-09T00:56:00,022 Found index url https://www.piwheels.org/simple
2022-03-09T00:56:00,241   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.0.0-py3-none-any.whl#sha256=295b3534c03d4d33691ed03b9aaa1769cce7c3dfd049472609861851d5147697 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2022-03-09T00:56:00,242   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.0.1-py3-none-any.whl#sha256=6ce913764fa0fbd66aca333bfaee4b8ba291318ddf7d12eb333ee775bb6399cb (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2022-03-09T00:56:00,242   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.0.2-py3-none-any.whl#sha256=e40087e26a118911beeba973a589afb546a8905bce3927348015d3b5ecb30fc4 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2022-03-09T00:56:00,243 Skipping link: not a file: https://www.piwheels.org/simple/depht/
2022-03-09T00:56:00,243 Skipping link: not a file: https://pypi.org/simple/depht/
2022-03-09T00:56:00,277 Given no hashes to check 1 links for project 'depht': discarding no candidates
2022-03-09T00:56:00,309 Collecting depht==1.1.1
2022-03-09T00:56:00,313   Created temporary directory: /tmp/pip-unpack-b345bl2g
2022-03-09T00:56:00,710   Downloading depht-1.1.1.tar.gz (99 kB)
2022-03-09T00:56:01,066   Added depht==1.1.1 from https://files.pythonhosted.org/packages/cc/16/89e0098b689b09ff80d73950844760981a915f23f3cdb60e33b27ac96ad2/depht-1.1.1.tar.gz#sha256=e9636aee4923786ce7c0e086a7a619b32592ba06361a62ead0c00d472c16a948 to build tracker '/tmp/pip-req-tracker-m6b9bz0l'
2022-03-09T00:56:01,074   Created temporary directory: /tmp/pip-build-env-vsuvd1d0
2022-03-09T00:56:01,088   Created temporary directory: /tmp/pip-standalone-pip-p_r_yac_
2022-03-09T00:56:03,285   Installing build dependencies: started
2022-03-09T00:56:03,288   Running command pip subprocess to install build dependencies
2022-03-09T00:56:13,351   Using pip 22.0.3 from /tmp/pip-standalone-pip-p_r_yac_/__env_pip__.zip/pip (python 3.7)
2022-03-09T00:56:14,712   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-03-09T00:56:18,829   Collecting setuptools
2022-03-09T00:56:19,075     Using cached https://www.piwheels.org/simple/setuptools/setuptools-60.9.3-py3-none-any.whl (1.1 MB)
2022-03-09T00:56:19,733   Collecting wheel
2022-03-09T00:56:19,768     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-03-09T00:56:24,024   Installing collected packages: wheel, setuptools
2022-03-09T00:56:24,295     Creating /tmp/pip-build-env-vsuvd1d0/overlay/bin
2022-03-09T00:56:24,300     changing mode of /tmp/pip-build-env-vsuvd1d0/overlay/bin/wheel to 755
2022-03-09T00:56:28,229   Successfully installed setuptools-60.9.3 wheel-0.37.1
2022-03-09T00:56:28,397   WARNING: You are using pip version 22.0.3; however, version 22.0.4 is available.
2022-03-09T00:56:28,398   You should consider upgrading via the '/usr/bin/python3 -m pip install --upgrade pip' command.
2022-03-09T00:56:28,857   Installing build dependencies: finished with status 'done'
2022-03-09T00:56:28,883   Getting requirements to build wheel: started
2022-03-09T00:56:28,885   Running command Getting requirements to build wheel
2022-03-09T00:56:30,845   running egg_info
2022-03-09T00:56:30,912   writing manifest file 'src/depht.egg-info/SOURCES.txt'
2022-03-09T00:56:31,041   Getting requirements to build wheel: finished with status 'done'
2022-03-09T00:56:31,062   Created temporary directory: /tmp/pip-modern-metadata-bukddwx3
2022-03-09T00:56:31,068   Preparing metadata (pyproject.toml): started
2022-03-09T00:56:31,070   Running command Preparing metadata (pyproject.toml)
2022-03-09T00:56:32,863   running dist_info
2022-03-09T00:56:32,890   creating /tmp/pip-modern-metadata-bukddwx3/depht.egg-info
2022-03-09T00:56:32,907   writing manifest file '/tmp/pip-modern-metadata-bukddwx3/depht.egg-info/SOURCES.txt'
2022-03-09T00:56:32,946   writing manifest file '/tmp/pip-modern-metadata-bukddwx3/depht.egg-info/SOURCES.txt'
2022-03-09T00:56:33,245   Preparing metadata (pyproject.toml): finished with status 'done'
2022-03-09T00:56:33,263   Source in /tmp/pip-wheel-nlcze6gv/depht_d39d573bc57e4b2dbb8ffd37c3d727f4 has version 1.1.1, which satisfies requirement depht==1.1.1 from https://files.pythonhosted.org/packages/cc/16/89e0098b689b09ff80d73950844760981a915f23f3cdb60e33b27ac96ad2/depht-1.1.1.tar.gz#sha256=e9636aee4923786ce7c0e086a7a619b32592ba06361a62ead0c00d472c16a948
2022-03-09T00:56:33,265   Removed depht==1.1.1 from https://files.pythonhosted.org/packages/cc/16/89e0098b689b09ff80d73950844760981a915f23f3cdb60e33b27ac96ad2/depht-1.1.1.tar.gz#sha256=e9636aee4923786ce7c0e086a7a619b32592ba06361a62ead0c00d472c16a948 from build tracker '/tmp/pip-req-tracker-m6b9bz0l'
2022-03-09T00:56:33,282 Created temporary directory: /tmp/pip-unpack-kltifv7r
2022-03-09T00:56:33,283 Building wheels for collected packages: depht
2022-03-09T00:56:33,294   Created temporary directory: /tmp/pip-wheel-uiv0m65b
2022-03-09T00:56:33,295   Destination directory: /tmp/pip-wheel-uiv0m65b
2022-03-09T00:56:33,300   Building wheel for depht (pyproject.toml): started
2022-03-09T00:56:33,302   Running command Building wheel for depht (pyproject.toml)
2022-03-09T00:56:35,167   running bdist_wheel
2022-03-09T00:56:35,591   running build
2022-03-09T00:56:35,592   running build_py
2022-03-09T00:56:35,601   creating build
2022-03-09T00:56:35,602   creating build/lib
2022-03-09T00:56:35,603   creating build/lib/depht
2022-03-09T00:56:35,605   copying src/depht/__main__.py -> build/lib/depht
2022-03-09T00:56:35,611   copying src/depht/__init__.py -> build/lib/depht
2022-03-09T00:56:35,615   copying src/depht/data.py -> build/lib/depht
2022-03-09T00:56:35,620   creating build/lib/depht_train
2022-03-09T00:56:35,622   copying src/depht_train/__main__.py -> build/lib/depht_train
2022-03-09T00:56:35,625   copying src/depht_train/__init__.py -> build/lib/depht_train
2022-03-09T00:56:35,629   copying src/depht_train/data.py -> build/lib/depht_train
2022-03-09T00:56:35,633   copying src/depht_train/run.py -> build/lib/depht_train
2022-03-09T00:56:35,639   creating build/lib/depht/functions
2022-03-09T00:56:35,641   copying src/depht/functions/visualization.py -> build/lib/depht/functions
2022-03-09T00:56:35,646   copying src/depht/functions/multiprocess.py -> build/lib/depht/functions
2022-03-09T00:56:35,649   copying src/depht/functions/sliding_window.py -> build/lib/depht/functions
2022-03-09T00:56:35,653   copying src/depht/functions/mmseqs.py -> build/lib/depht/functions
2022-03-09T00:56:35,658   copying src/depht/functions/annotation.py -> build/lib/depht/functions
2022-03-09T00:56:35,663   copying src/depht/functions/__init__.py -> build/lib/depht/functions
2022-03-09T00:56:35,666   copying src/depht/functions/att.py -> build/lib/depht/functions
2022-03-09T00:56:35,671   copying src/depht/functions/sniff_format.py -> build/lib/depht/functions
2022-03-09T00:56:35,674   copying src/depht/functions/statistics.py -> build/lib/depht/functions
2022-03-09T00:56:35,678   copying src/depht/functions/subprocess.py -> build/lib/depht/functions
2022-03-09T00:56:35,682   copying src/depht/functions/find_homologs.py -> build/lib/depht/functions
2022-03-09T00:56:35,685   copying src/depht/functions/fasta.py -> build/lib/depht/functions
2022-03-09T00:56:35,689   copying src/depht/functions/blastn.py -> build/lib/depht/functions
2022-03-09T00:56:35,692   copying src/depht/functions/prophage_prediction.py -> build/lib/depht/functions
2022-03-09T00:56:35,698   creating build/lib/depht/classes
2022-03-09T00:56:35,699   copying src/depht/classes/hhresult.py -> build/lib/depht/classes
2022-03-09T00:56:35,704   copying src/depht/classes/__init__.py -> build/lib/depht/classes
2022-03-09T00:56:35,706   copying src/depht/classes/progress.py -> build/lib/depht/classes
2022-03-09T00:56:35,709   copying src/depht/classes/prophage.py -> build/lib/depht/classes
2022-03-09T00:56:35,713   copying src/depht/classes/file_translator.py -> build/lib/depht/classes
2022-03-09T00:56:35,717   copying src/depht/classes/prophage_classifier.py -> build/lib/depht/classes
2022-03-09T00:56:35,721   copying src/depht/classes/contig.py -> build/lib/depht/classes
2022-03-09T00:56:35,726   creating build/lib/depht_train/pipelines
2022-03-09T00:56:35,728   copying src/depht_train/pipelines/train_model.py -> build/lib/depht_train/pipelines
2022-03-09T00:56:35,732   copying src/depht_train/pipelines/create_model.py -> build/lib/depht_train/pipelines
2022-03-09T00:56:35,736   copying src/depht_train/pipelines/build_reference_db.py -> build/lib/depht_train/pipelines
2022-03-09T00:56:35,739   copying src/depht_train/pipelines/build_HMM_db.py -> build/lib/depht_train/pipelines
2022-03-09T00:56:35,742   copying src/depht_train/pipelines/__init__.py -> build/lib/depht_train/pipelines
2022-03-09T00:56:35,744   copying src/depht_train/pipelines/phamerate.py -> build/lib/depht_train/pipelines
2022-03-09T00:56:35,749   copying src/depht_train/pipelines/recut_fasta.py -> build/lib/depht_train/pipelines
2022-03-09T00:56:35,752   copying src/depht_train/pipelines/curate_gene_clusters.py -> build/lib/depht_train/pipelines
2022-03-09T00:56:35,755   copying src/depht_train/pipelines/benchmark_output.py -> build/lib/depht_train/pipelines
2022-03-09T00:56:35,760   copying src/depht_train/pipelines/index_sequences.py -> build/lib/depht_train/pipelines
2022-03-09T00:56:35,763   copying src/depht_train/pipelines/plot_gene_density.py -> build/lib/depht_train/pipelines
2022-03-09T00:56:35,767   copying src/depht_train/pipelines/pull_sequences.py -> build/lib/depht_train/pipelines
2022-03-09T00:56:35,770   copying src/depht_train/pipelines/screen_conserved_phams.py -> build/lib/depht_train/pipelines
2022-03-09T00:56:35,775   creating build/lib/depht_train/functions
2022-03-09T00:56:35,777   copying src/depht_train/functions/hhsuitedb.py -> build/lib/depht_train/functions
2022-03-09T00:56:35,781   copying src/depht_train/functions/blastdb.py -> build/lib/depht_train/functions
2022-03-09T00:56:35,784   copying src/depht_train/functions/entrez.py -> build/lib/depht_train/functions
2022-03-09T00:56:35,788   copying src/depht_train/functions/clustalo.py -> build/lib/depht_train/functions
2022-03-09T00:56:35,791   copying src/depht_train/functions/__init__.py -> build/lib/depht_train/functions
2022-03-09T00:56:35,794   copying src/depht_train/functions/config_handling.py -> build/lib/depht_train/functions
2022-03-09T00:56:35,797   copying src/depht_train/functions/fileio.py -> build/lib/depht_train/functions
2022-03-09T00:56:35,800   copying src/depht_train/functions/train_classifier.py -> build/lib/depht_train/functions
2022-03-09T00:56:35,805   creating build/lib/depht_train/classes
2022-03-09T00:56:35,806   copying src/depht_train/classes/database.py -> build/lib/depht_train/classes
2022-03-09T00:56:35,810   copying src/depht_train/classes/__init__.py -> build/lib/depht_train/classes
2022-03-09T00:56:35,812   copying src/depht_train/classes/kfold.py -> build/lib/depht_train/classes
2022-03-09T00:56:35,840   running install
2022-03-09T00:56:35,902   running install_lib
2022-03-09T00:56:35,909   creating build/bdist.linux-armv7l
2022-03-09T00:56:35,909   creating build/bdist.linux-armv7l/wheel
2022-03-09T00:56:35,912   creating build/bdist.linux-armv7l/wheel/depht
2022-03-09T00:56:35,926   creating build/bdist.linux-armv7l/wheel/depht/functions
2022-03-09T00:56:35,979   creating build/bdist.linux-armv7l/wheel/depht/classes
2022-03-09T00:56:36,007   creating build/bdist.linux-armv7l/wheel/depht_train
2022-03-09T00:56:36,013   creating build/bdist.linux-armv7l/wheel/depht_train/pipelines
2022-03-09T00:56:36,075   creating build/bdist.linux-armv7l/wheel/depht_train/functions
2022-03-09T00:56:36,105   creating build/bdist.linux-armv7l/wheel/depht_train/classes
2022-03-09T00:56:36,116   running install_egg_info
2022-03-09T00:56:36,155   running egg_info
2022-03-09T00:56:36,202   writing manifest file 'src/depht.egg-info/SOURCES.txt'
2022-03-09T00:56:36,205   Copying src/depht.egg-info to build/bdist.linux-armv7l/wheel/depht-1.1.1-py3.7.egg-info
2022-03-09T00:56:36,230   running install_scripts
2022-03-09T00:56:37,075   Building wheel for depht (pyproject.toml): finished with status 'done'
2022-03-09T00:56:37,093   Created wheel for depht: filename=depht-1.1.1-py3-none-any.whl size=110973 sha256=7a317fc77958224a59cf68ead901529121d9d2b51e9857531a1804cf02652711
2022-03-09T00:56:37,096   Stored in directory: /tmp/pip-ephem-wheel-cache-yi_kxcho/wheels/9a/b0/0a/b0d47f83f5371ceec26955d1892357774c1f6b9272f4937f22
2022-03-09T00:56:37,128 Successfully built depht
2022-03-09T00:56:37,142 Removed build tracker: '/tmp/pip-req-tracker-m6b9bz0l'