2022-03-09T15:36:10,264 Created temporary directory: /tmp/pip-ephem-wheel-cache-ttvcg6ur
2022-03-09T15:36:10,270 Created temporary directory: /tmp/pip-req-tracker-npl7yd55
2022-03-09T15:36:10,271 Initialized build tracking at /tmp/pip-req-tracker-npl7yd55
2022-03-09T15:36:10,271 Created build tracker: /tmp/pip-req-tracker-npl7yd55
2022-03-09T15:36:10,271 Entered build tracker: /tmp/pip-req-tracker-npl7yd55
2022-03-09T15:36:10,273 Created temporary directory: /tmp/pip-wheel-enq6lz52
2022-03-09T15:36:10,335 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-03-09T15:36:10,344 2 location(s) to search for versions of depht:
2022-03-09T15:36:10,344 * https://pypi.org/simple/depht/
2022-03-09T15:36:10,344 * https://www.piwheels.org/simple/depht/
2022-03-09T15:36:10,345 Fetching project page and analyzing links: https://pypi.org/simple/depht/
2022-03-09T15:36:10,346 Getting page https://pypi.org/simple/depht/
2022-03-09T15:36:10,349 Found index url https://pypi.org/simple
2022-03-09T15:36:10,465   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/19/72/fe63d35459233b43e179b3579a137c84b3586a1ec3f6674ce1340fadc2fc/depht-1.0.0-py3-none-any.whl#sha256=a375093b069cfcfc1a0d8cf6e37c3aecbc4b8cd717397b251190bf605d06a0a4 (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2022-03-09T15:36:10,467   Found link https://files.pythonhosted.org/packages/91/61/e0c3c1e725b4a281c087467594e908e0a46e1a91ec288ac09b22c4a4ac17/depht-1.0.0.tar.gz#sha256=73eb7bd7d32d52ae5e0bdb62d8ce17cf59d68d633805075a876d6f3cf85da123 (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.0.0
2022-03-09T15:36:10,468   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/3a/8d/e2d2dea7750112dc8b17f17828c6700755e580cfbfadbb6ca1f29cfba3b1/depht-1.0.1-py3-none-any.whl#sha256=93b59e25c7de78b41fa21c3af9a3348c5c69256786790c8b15937b9206cd8e6c (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2022-03-09T15:36:10,469   Found link https://files.pythonhosted.org/packages/39/4b/eda220e1c8d0f7fa2733a9ca9b4918e5ab3e61c8eae17fac32f8719f9e1d/depht-1.0.1.tar.gz#sha256=c623361560ccb615d9ec68467e99bac0e97dca43754d8e86a904ad940e6404a5 (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.0.1
2022-03-09T15:36:10,470   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/32/5e/b4a44d00807cb6ace2704a7bcb063535c0d55fd66876c9f0dfb969311c1f/depht-1.0.2-py3-none-any.whl#sha256=9aab1c0ae369d511c3f89a6a4491a7455ce30950f9406a53be0ffa305e31e6cc (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2022-03-09T15:36:10,471   Found link https://files.pythonhosted.org/packages/d9/e7/1db918963510d931b43704f804783319af47f7c82f5d9a2e53f6936bd67a/depht-1.0.2.tar.gz#sha256=ff8af7ddde50765d86c95835482160c536639f78ea0d6750c5a7bd08e1894654 (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.0.2
2022-03-09T15:36:10,472   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/8b/99/c44ff60e08d7f5708286fb26fc216d2f7ca4ff46fd19b9aa76bbc031a4ac/depht-1.1.1-py3-none-any.whl#sha256=a61b455fc299a29ecb09827e0433e93dcdbd1ca6ad616f0e4df8c456ba29841e (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2022-03-09T15:36:10,473   Found link https://files.pythonhosted.org/packages/cc/16/89e0098b689b09ff80d73950844760981a915f23f3cdb60e33b27ac96ad2/depht-1.1.1.tar.gz#sha256=e9636aee4923786ce7c0e086a7a619b32592ba06361a62ead0c00d472c16a948 (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.1.1
2022-03-09T15:36:10,474   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/cc/b2/c5f4eb7fdc8eb091a14a01cba0e3a2a5756757cc34aa7b92289d00df78ad/depht-1.1.2-py3-none-any.whl#sha256=f0fc36a71aca7fb01e8fd0a4e814c7ac36ee4b4e6807a777af7ab14a3503e8c6 (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2022-03-09T15:36:10,475   Found link https://files.pythonhosted.org/packages/8d/66/3be8e1fd8a0d732664b4afa5d2cdcaaacfd8074aa933df37ee16bad8cb71/depht-1.1.2.tar.gz#sha256=f8a58e76e363ade42b03b82ede2609eef02c6f4921850faf5f5ac724838a9aaf (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.1.2
2022-03-09T15:36:10,476 Fetching project page and analyzing links: https://www.piwheels.org/simple/depht/
2022-03-09T15:36:10,477 Getting page https://www.piwheels.org/simple/depht/
2022-03-09T15:36:10,479 Found index url https://www.piwheels.org/simple
2022-03-09T15:36:10,700   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.0.0-py3-none-any.whl#sha256=295b3534c03d4d33691ed03b9aaa1769cce7c3dfd049472609861851d5147697 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2022-03-09T15:36:10,701   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.0.1-py3-none-any.whl#sha256=6ce913764fa0fbd66aca333bfaee4b8ba291318ddf7d12eb333ee775bb6399cb (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2022-03-09T15:36:10,701   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.0.2-py3-none-any.whl#sha256=e40087e26a118911beeba973a589afb546a8905bce3927348015d3b5ecb30fc4 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2022-03-09T15:36:10,702   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.1.1-py3-none-any.whl#sha256=7a317fc77958224a59cf68ead901529121d9d2b51e9857531a1804cf02652711 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2022-03-09T15:36:10,702 Skipping link: not a file: https://www.piwheels.org/simple/depht/
2022-03-09T15:36:10,703 Skipping link: not a file: https://pypi.org/simple/depht/
2022-03-09T15:36:10,738 Given no hashes to check 1 links for project 'depht': discarding no candidates
2022-03-09T15:36:10,769 Collecting depht==1.1.2
2022-03-09T15:36:10,774   Created temporary directory: /tmp/pip-unpack-_j4m2mcv
2022-03-09T15:36:11,037   Downloading depht-1.1.2.tar.gz (100 kB)
2022-03-09T15:36:11,397   Added depht==1.1.2 from https://files.pythonhosted.org/packages/8d/66/3be8e1fd8a0d732664b4afa5d2cdcaaacfd8074aa933df37ee16bad8cb71/depht-1.1.2.tar.gz#sha256=f8a58e76e363ade42b03b82ede2609eef02c6f4921850faf5f5ac724838a9aaf to build tracker '/tmp/pip-req-tracker-npl7yd55'
2022-03-09T15:36:11,406   Created temporary directory: /tmp/pip-build-env-hc9jcolz
2022-03-09T15:36:11,420   Created temporary directory: /tmp/pip-standalone-pip-pghh0or4
2022-03-09T15:36:13,730   Installing build dependencies: started
2022-03-09T15:36:13,732   Running command pip subprocess to install build dependencies
2022-03-09T15:36:23,759   Using pip 22.0.3 from /tmp/pip-standalone-pip-pghh0or4/__env_pip__.zip/pip (python 3.7)
2022-03-09T15:36:25,105   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-03-09T15:36:29,224   Collecting setuptools
2022-03-09T15:36:29,475     Using cached https://www.piwheels.org/simple/setuptools/setuptools-60.9.3-py3-none-any.whl (1.1 MB)
2022-03-09T15:36:30,109   Collecting wheel
2022-03-09T15:36:30,145     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-03-09T15:36:34,465   Installing collected packages: wheel, setuptools
2022-03-09T15:36:34,734     Creating /tmp/pip-build-env-hc9jcolz/overlay/bin
2022-03-09T15:36:34,738     changing mode of /tmp/pip-build-env-hc9jcolz/overlay/bin/wheel to 755
2022-03-09T15:36:38,623   Successfully installed setuptools-60.9.3 wheel-0.37.1
2022-03-09T15:36:38,792   WARNING: You are using pip version 22.0.3; however, version 22.0.4 is available.
2022-03-09T15:36:38,793   You should consider upgrading via the '/usr/bin/python3 -m pip install --upgrade pip' command.
2022-03-09T15:36:39,255   Installing build dependencies: finished with status 'done'
2022-03-09T15:36:39,281   Getting requirements to build wheel: started
2022-03-09T15:36:39,283   Running command Getting requirements to build wheel
2022-03-09T15:36:41,204   running egg_info
2022-03-09T15:36:41,272   writing manifest file 'src/depht.egg-info/SOURCES.txt'
2022-03-09T15:36:41,402   Getting requirements to build wheel: finished with status 'done'
2022-03-09T15:36:41,422   Created temporary directory: /tmp/pip-modern-metadata-71ijz6_t
2022-03-09T15:36:41,428   Preparing metadata (pyproject.toml): started
2022-03-09T15:36:41,430   Running command Preparing metadata (pyproject.toml)
2022-03-09T15:36:43,213   running dist_info
2022-03-09T15:36:43,241   creating /tmp/pip-modern-metadata-71ijz6_t/depht.egg-info
2022-03-09T15:36:43,258   writing manifest file '/tmp/pip-modern-metadata-71ijz6_t/depht.egg-info/SOURCES.txt'
2022-03-09T15:36:43,298   writing manifest file '/tmp/pip-modern-metadata-71ijz6_t/depht.egg-info/SOURCES.txt'
2022-03-09T15:36:43,603   Preparing metadata (pyproject.toml): finished with status 'done'
2022-03-09T15:36:43,621   Source in /tmp/pip-wheel-enq6lz52/depht_59cd25533d1d4850bff34d7b1361840d has version 1.1.2, which satisfies requirement depht==1.1.2 from https://files.pythonhosted.org/packages/8d/66/3be8e1fd8a0d732664b4afa5d2cdcaaacfd8074aa933df37ee16bad8cb71/depht-1.1.2.tar.gz#sha256=f8a58e76e363ade42b03b82ede2609eef02c6f4921850faf5f5ac724838a9aaf
2022-03-09T15:36:43,623   Removed depht==1.1.2 from https://files.pythonhosted.org/packages/8d/66/3be8e1fd8a0d732664b4afa5d2cdcaaacfd8074aa933df37ee16bad8cb71/depht-1.1.2.tar.gz#sha256=f8a58e76e363ade42b03b82ede2609eef02c6f4921850faf5f5ac724838a9aaf from build tracker '/tmp/pip-req-tracker-npl7yd55'
2022-03-09T15:36:43,640 Created temporary directory: /tmp/pip-unpack-o8_4mt6z
2022-03-09T15:36:43,641 Building wheels for collected packages: depht
2022-03-09T15:36:43,650   Created temporary directory: /tmp/pip-wheel-m009rbxk
2022-03-09T15:36:43,651   Destination directory: /tmp/pip-wheel-m009rbxk
2022-03-09T15:36:43,656   Building wheel for depht (pyproject.toml): started
2022-03-09T15:36:43,658   Running command Building wheel for depht (pyproject.toml)
2022-03-09T15:36:45,524   running bdist_wheel
2022-03-09T15:36:45,950   running build
2022-03-09T15:36:45,951   running build_py
2022-03-09T15:36:45,958   creating build
2022-03-09T15:36:45,959   creating build/lib
2022-03-09T15:36:45,962   creating build/lib/depht_train
2022-03-09T15:36:45,964   copying src/depht_train/__init__.py -> build/lib/depht_train
2022-03-09T15:36:45,968   copying src/depht_train/run.py -> build/lib/depht_train
2022-03-09T15:36:45,972   copying src/depht_train/data.py -> build/lib/depht_train
2022-03-09T15:36:45,976   copying src/depht_train/__main__.py -> build/lib/depht_train
2022-03-09T15:36:45,980   creating build/lib/depht
2022-03-09T15:36:45,981   copying src/depht/__init__.py -> build/lib/depht
2022-03-09T15:36:45,985   copying src/depht/data.py -> build/lib/depht
2022-03-09T15:36:45,989   copying src/depht/__main__.py -> build/lib/depht
2022-03-09T15:36:45,995   creating build/lib/depht_train/classes
2022-03-09T15:36:45,996   copying src/depht_train/classes/database.py -> build/lib/depht_train/classes
2022-03-09T15:36:46,000   copying src/depht_train/classes/kfold.py -> build/lib/depht_train/classes
2022-03-09T15:36:46,004   copying src/depht_train/classes/__init__.py -> build/lib/depht_train/classes
2022-03-09T15:36:46,008   creating build/lib/depht_train/functions
2022-03-09T15:36:46,010   copying src/depht_train/functions/__init__.py -> build/lib/depht_train/functions
2022-03-09T15:36:46,012   copying src/depht_train/functions/blastdb.py -> build/lib/depht_train/functions
2022-03-09T15:36:46,015   copying src/depht_train/functions/clustalo.py -> build/lib/depht_train/functions
2022-03-09T15:36:46,019   copying src/depht_train/functions/config_handling.py -> build/lib/depht_train/functions
2022-03-09T15:36:46,022   copying src/depht_train/functions/entrez.py -> build/lib/depht_train/functions
2022-03-09T15:36:46,025   copying src/depht_train/functions/hhsuitedb.py -> build/lib/depht_train/functions
2022-03-09T15:36:46,030   copying src/depht_train/functions/fileio.py -> build/lib/depht_train/functions
2022-03-09T15:36:46,033   copying src/depht_train/functions/train_classifier.py -> build/lib/depht_train/functions
2022-03-09T15:36:46,039   creating build/lib/depht_train/pipelines
2022-03-09T15:36:46,040   copying src/depht_train/pipelines/screen_conserved_phams.py -> build/lib/depht_train/pipelines
2022-03-09T15:36:46,045   copying src/depht_train/pipelines/__init__.py -> build/lib/depht_train/pipelines
2022-03-09T15:36:46,047   copying src/depht_train/pipelines/build_reference_db.py -> build/lib/depht_train/pipelines
2022-03-09T15:36:46,050   copying src/depht_train/pipelines/pull_sequences.py -> build/lib/depht_train/pipelines
2022-03-09T15:36:46,054   copying src/depht_train/pipelines/phamerate.py -> build/lib/depht_train/pipelines
2022-03-09T15:36:46,058   copying src/depht_train/pipelines/create_model.py -> build/lib/depht_train/pipelines
2022-03-09T15:36:46,062   copying src/depht_train/pipelines/train_model.py -> build/lib/depht_train/pipelines
2022-03-09T15:36:46,066   copying src/depht_train/pipelines/recut_fasta.py -> build/lib/depht_train/pipelines
2022-03-09T15:36:46,069   copying src/depht_train/pipelines/plot_gene_density.py -> build/lib/depht_train/pipelines
2022-03-09T15:36:46,073   copying src/depht_train/pipelines/index_sequences.py -> build/lib/depht_train/pipelines
2022-03-09T15:36:46,077   copying src/depht_train/pipelines/curate_gene_clusters.py -> build/lib/depht_train/pipelines
2022-03-09T15:36:46,081   copying src/depht_train/pipelines/build_HMM_db.py -> build/lib/depht_train/pipelines
2022-03-09T15:36:46,084   copying src/depht_train/pipelines/benchmark_output.py -> build/lib/depht_train/pipelines
2022-03-09T15:36:46,090   creating build/lib/depht/classes
2022-03-09T15:36:46,092   copying src/depht/classes/__init__.py -> build/lib/depht/classes
2022-03-09T15:36:46,095   copying src/depht/classes/prophage.py -> build/lib/depht/classes
2022-03-09T15:36:46,099   copying src/depht/classes/contig.py -> build/lib/depht/classes
2022-03-09T15:36:46,102   copying src/depht/classes/progress.py -> build/lib/depht/classes
2022-03-09T15:36:46,105   copying src/depht/classes/hhresult.py -> build/lib/depht/classes
2022-03-09T15:36:46,110   copying src/depht/classes/file_translator.py -> build/lib/depht/classes
2022-03-09T15:36:46,114   copying src/depht/classes/prophage_classifier.py -> build/lib/depht/classes
2022-03-09T15:36:46,120   creating build/lib/depht/functions
2022-03-09T15:36:46,121   copying src/depht/functions/subprocess.py -> build/lib/depht/functions
2022-03-09T15:36:46,125   copying src/depht/functions/annotation.py -> build/lib/depht/functions
2022-03-09T15:36:46,129   copying src/depht/functions/__init__.py -> build/lib/depht/functions
2022-03-09T15:36:46,132   copying src/depht/functions/visualization.py -> build/lib/depht/functions
2022-03-09T15:36:46,136   copying src/depht/functions/blastn.py -> build/lib/depht/functions
2022-03-09T15:36:46,139   copying src/depht/functions/multiprocess.py -> build/lib/depht/functions
2022-03-09T15:36:46,142   copying src/depht/functions/sliding_window.py -> build/lib/depht/functions
2022-03-09T15:36:46,145   copying src/depht/functions/statistics.py -> build/lib/depht/functions
2022-03-09T15:36:46,149   copying src/depht/functions/mmseqs.py -> build/lib/depht/functions
2022-03-09T15:36:46,154   copying src/depht/functions/att.py -> build/lib/depht/functions
2022-03-09T15:36:46,159   copying src/depht/functions/find_homologs.py -> build/lib/depht/functions
2022-03-09T15:36:46,162   copying src/depht/functions/sniff_format.py -> build/lib/depht/functions
2022-03-09T15:36:46,165   copying src/depht/functions/prophage_prediction.py -> build/lib/depht/functions
2022-03-09T15:36:46,169   copying src/depht/functions/fasta.py -> build/lib/depht/functions
2022-03-09T15:36:46,198   running install
2022-03-09T15:36:46,259   running install_lib
2022-03-09T15:36:46,266   creating build/bdist.linux-armv7l
2022-03-09T15:36:46,267   creating build/bdist.linux-armv7l/wheel
2022-03-09T15:36:46,270   creating build/bdist.linux-armv7l/wheel/depht_train
2022-03-09T15:36:46,276   creating build/bdist.linux-armv7l/wheel/depht_train/classes
2022-03-09T15:36:46,288   creating build/bdist.linux-armv7l/wheel/depht_train/functions
2022-03-09T15:36:46,327   creating build/bdist.linux-armv7l/wheel/depht_train/pipelines
2022-03-09T15:36:46,374   creating build/bdist.linux-armv7l/wheel/depht
2022-03-09T15:36:46,380   creating build/bdist.linux-armv7l/wheel/depht/classes
2022-03-09T15:36:46,407   creating build/bdist.linux-armv7l/wheel/depht/functions
2022-03-09T15:36:46,465   running install_egg_info
2022-03-09T15:36:46,503   running egg_info
2022-03-09T15:36:46,551   writing manifest file 'src/depht.egg-info/SOURCES.txt'
2022-03-09T15:36:46,553   Copying src/depht.egg-info to build/bdist.linux-armv7l/wheel/depht-1.1.2-py3.7.egg-info
2022-03-09T15:36:46,577   running install_scripts
2022-03-09T15:36:47,198   Building wheel for depht (pyproject.toml): finished with status 'done'
2022-03-09T15:36:47,217   Created wheel for depht: filename=depht-1.1.2-py3-none-any.whl size=111336 sha256=3483519a46f25e042f5cf9af6684ffabce759671294bc14174cfa951237458ec
2022-03-09T15:36:47,220   Stored in directory: /tmp/pip-ephem-wheel-cache-ttvcg6ur/wheels/10/2e/f7/93611046b113f3d2b270ff8ab610bbaeeedec8dec13be3b235
2022-03-09T15:36:47,253 Successfully built depht
2022-03-09T15:36:47,270 Removed build tracker: '/tmp/pip-req-tracker-npl7yd55'