2022-03-11T12:16:45,925 Created temporary directory: /tmp/pip-ephem-wheel-cache-dh4kx8ps 2022-03-11T12:16:45,931 Created temporary directory: /tmp/pip-req-tracker-7xfx8opp 2022-03-11T12:16:45,932 Initialized build tracking at /tmp/pip-req-tracker-7xfx8opp 2022-03-11T12:16:45,932 Created build tracker: /tmp/pip-req-tracker-7xfx8opp 2022-03-11T12:16:45,932 Entered build tracker: /tmp/pip-req-tracker-7xfx8opp 2022-03-11T12:16:45,934 Created temporary directory: /tmp/pip-wheel-nsiim9_f 2022-03-11T12:16:46,001 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-03-11T12:16:46,009 2 location(s) to search for versions of whatshap: 2022-03-11T12:16:46,009 * https://pypi.org/simple/whatshap/ 2022-03-11T12:16:46,009 * https://www.piwheels.org/simple/whatshap/ 2022-03-11T12:16:46,010 Fetching project page and analyzing links: https://pypi.org/simple/whatshap/ 2022-03-11T12:16:46,011 Getting page https://pypi.org/simple/whatshap/ 2022-03-11T12:16:46,015 Found index url https://pypi.org/simple 2022-03-11T12:16:46,149 Found link https://files.pythonhosted.org/packages/35/95/43ff2304cd59ade39e64aadaeaec48e8c12bbe6262bcbbbd7b7d89487757/whatshap-0.9.tar.gz#sha256=beaadbc79e4d463b5e441b8e9a13b5345c07db3d91fb093cee1bfebfebae4442 (from https://pypi.org/simple/whatshap/), version: 0.9 2022-03-11T12:16:46,150 Found link https://files.pythonhosted.org/packages/f0/4b/f2b882803ac66b969414d8427ee8b4ca2c29b17cfead0fd85f349dc66983/whatshap-0.10.tar.gz#sha256=864d4ecfc33eac7265452f5a2f468a830779afc53e723119ecac5ecf73255acc (from https://pypi.org/simple/whatshap/), version: 0.10 2022-03-11T12:16:46,151 Found link https://files.pythonhosted.org/packages/fc/dc/30559c28fb54985773fb242f5768fc206e054e44e45962a32cf4fd29a794/whatshap-0.11.tar.gz#sha256=d0367a4dd0adf288d30a9a87b565e4f141745bec3ea825cb85ac3409a593bde9 (from https://pypi.org/simple/whatshap/), version: 0.11 2022-03-11T12:16:46,152 Found link https://files.pythonhosted.org/packages/01/84/31a5ea338647d0256a4a5c57e98d7a563f387e6a47f1e26299b89e3f2da1/whatshap-0.12.tar.gz#sha256=c65060155dc901e4d4bd48077706660e5b214540d4dc20575a8b2146fb6a11f9 (from https://pypi.org/simple/whatshap/), version: 0.12 2022-03-11T12:16:46,152 Found link https://files.pythonhosted.org/packages/e2/f3/c71cb4bc3ba3b1234ee0c5fe729c60440164e07437695ca09c61750e0e11/whatshap-0.13.tar.gz#sha256=529646db74b2cac9f12ebd530bd7bb40cb073c367894bf66c5994c1d7f32b56a (from https://pypi.org/simple/whatshap/), version: 0.13 2022-03-11T12:16:46,153 Found link https://files.pythonhosted.org/packages/cd/d3/a63285d15b0da196a259197e46d9f61a852d1b3c94800f4a82ca4e31e307/whatshap-0.14.tar.gz#sha256=dd6076e67c5a4ce75d2510b3dbdd3c1e524124be62655f06c82f7d9fce4c5643 (from https://pypi.org/simple/whatshap/), version: 0.14 2022-03-11T12:16:46,154 Found link https://files.pythonhosted.org/packages/ec/d4/d6c19b716926895ee3def919ab23194212172ed5cf89ccb91c2949fb258d/whatshap-0.14.1.tar.gz#sha256=7b5781f1138b1830c4627451d1d5c77e7f2a3c5403510d9ab2a63f545911415b (from https://pypi.org/simple/whatshap/), version: 0.14.1 2022-03-11T12:16:46,154 Found link https://files.pythonhosted.org/packages/ca/13/6454e5e8f6c858a203378b3e22f13518f092ba85aa6d7a9a9796d22c28e0/whatshap-0.15.tar.gz#sha256=2dc9d89d71cf99e10c71b6138edd456bfcf0d7355794bc3491078654df85bc38 (from https://pypi.org/simple/whatshap/), version: 0.15 2022-03-11T12:16:46,155 Found link https://files.pythonhosted.org/packages/3d/cb/55730a8713ecba10f6d987dbd935ba31ded92f9af1ddd250896f3c1cfc3b/whatshap-0.16.tar.gz#sha256=1df54d8705fb0451cc0a640918842481087f7b741778dfb4100cc1f4f60f48fe (from https://pypi.org/simple/whatshap/), version: 0.16 2022-03-11T12:16:46,156 Found link https://files.pythonhosted.org/packages/79/11/79da12b8c23f43b00fab8a6206f75cc1cc8c1902ff30eca53c17abe2f633/whatshap-0.17.tar.gz#sha256=8ad1c66789fe5fe957b3695902dae3c3fd4e67f79b9e349b92b532e9ff618933 (from https://pypi.org/simple/whatshap/), version: 0.17 2022-03-11T12:16:46,156 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/97/19/5758de9357d2639e81f774dffd5227278df2df7f56e81f080098f00c8d5a/whatshap-0.18-cp34-cp34m-manylinux1_x86_64.whl#sha256=4a09adc24c6db3bd525667ac2559181dc94ee203a64f488dfce1ac38cbf44ba5 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4) 2022-03-11T12:16:46,157 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/d0/72/94dc654f66164a351a1a9540e28b4bdf34a81046fbf26b5955725bea2f64/whatshap-0.18-cp35-cp35m-manylinux1_x86_64.whl#sha256=1c99980629655e58a34496b0e1b1c9123dddd0797a13cf681dcf83f92a6f33e0 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4) 2022-03-11T12:16:46,158 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/0a/50/c9c89e7f3a59251a91e618165ccc2586b626643a4c59dfd8d1b32f9b6bbb/whatshap-0.18-cp36-cp36m-manylinux1_x86_64.whl#sha256=fdadadbed86cc7a7abd8f9ef3d55fe280eda957473db03dc30ad06ace6b877bd (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4) 2022-03-11T12:16:46,158 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/32/77/e9e6f3e15a89ea87b0a3ed50e99af2a375a897707eb8b4c81209af918ff0/whatshap-0.18-cp37-cp37m-manylinux1_x86_64.whl#sha256=2e189cb51c2527444dada90f8fd2355ddfe8d9d35aca386330e63bc46c2d2699 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4) 2022-03-11T12:16:46,160 Found link https://files.pythonhosted.org/packages/f0/e4/4392c2f1320ea8d4b79a76e3a6dcb9bd7bf6ed70e11499c9acf2db2d42ef/whatshap-0.18.tar.gz#sha256=c566130eca57fe9e34f5193390856dc44171c397f9708c49fcbf204e575b6695 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4), version: 0.18 2022-03-11T12:16:46,161 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/0f/f5/78e5fa758144941f08b1de923889c7123e4d20368837904fc004592b6ec9/whatshap-1.0-cp36-cp36m-manylinux2010_x86_64.whl#sha256=ff945c6a0406f328771dbbc86970bd48a0327833ca8e96ad836a55ab32ae99d4 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-03-11T12:16:46,161 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/42/cb/53a1a2a160846a225c6184da26e8f6d6577f5af378e3a90aab728bb5b504/whatshap-1.0-cp37-cp37m-manylinux2010_x86_64.whl#sha256=78bacd81697878129a6ff39f9474792f85b95e6fde7bfa30371b87a24d5e9d3a (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-03-11T12:16:46,162 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/63/91/5aaa2ec02a362e784d7be43f43b1e243fa9153ef5d9ab3ada91759638444/whatshap-1.0-cp38-cp38-manylinux2010_x86_64.whl#sha256=62318377e996d1f3040cbfdb3462a3140dbdfd4113584c9000b530ca70bbf223 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-03-11T12:16:46,163 Found link https://files.pythonhosted.org/packages/c0/c8/98036e04fb95249128d6b49ca61691e1d8eea484dd94611f90efb5857174/whatshap-1.0.tar.gz#sha256=fcf0495793998da94054bdc4c6d6f3f6b145a7befa07ac96275e5e2272979aa2 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.0 2022-03-11T12:16:46,164 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/8a/fb/dfaa97a9ec1fe333dcd730498376d33bc21de017760b633d8dd84f9cd9f6/whatshap-1.1-cp36-cp36m-manylinux2010_x86_64.whl#sha256=93af99ab08fac60bb3e46cde68978619f095e1b47490f59e4085f338ad715b46 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-03-11T12:16:46,164 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/37/4e/a06bd339ea7179e750d49fec27caba7a6b364f608b5126105770333a6dfa/whatshap-1.1-cp37-cp37m-manylinux2010_x86_64.whl#sha256=94c04469069a87636c8aaf88d9f3e33022864de633327fedfdedd8da2bc4c6aa (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-03-11T12:16:46,165 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/2b/61/3000e39650a20faf011d74e41c3a6e3eea11195b1dad6cc8398665539363/whatshap-1.1-cp38-cp38-manylinux2010_x86_64.whl#sha256=7821711be901f898437a6be4993a15e77edbb59683ffa76d3dc9bc1bf855769a (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-03-11T12:16:46,165 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/37/1a/f9708037de73715099098762c13e8e0681129041d41fb0ab508004ed2aa7/whatshap-1.1-cp39-cp39-manylinux2010_x86_64.whl#sha256=9e3a3169de452412c4e5cfe3220c0d51178d4811f33183e53069c57de49253ae (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-03-11T12:16:46,167 Found link https://files.pythonhosted.org/packages/94/69/20b124a032b37c73ac56708744cbf2542cbc3e31390f261853ca5a6f62fe/whatshap-1.1.tar.gz#sha256=4e6486e6ce2babf55a225dd9e0030df6fcc27629d34803428cbe88a79137bb6f (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.1 2022-03-11T12:16:46,168 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/ce/5e/0c32569323ea5e7c036cd9344aa669d92e4a30bbcd4a00dda5483dad67a4/whatshap-1.2-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=cb4a11ab89e8b71ad557dd404bb80e41a9990812190d42a2d6389f1b0157d8af (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-03-11T12:16:46,168 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/c0/b0/0055bf0099361e24f02851b3df68d75e1165a7e13d8b6c4a5bbf1215f924/whatshap-1.2-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=ebea3b0418f817764f171cd151586fedcde6d43cf9c8b8ad744b9f209aabb775 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-03-11T12:16:46,169 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/43/09/3fe5c7130f5356b2b7b911539b52c090e2ee6532c14fc3f29fdbf6c2b569/whatshap-1.2-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=29058e18ef6916b4a0285691617e41b1246b61460c8962fd578a2de17009834b (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-03-11T12:16:46,169 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/d1/af/55a5fe140b3a0491c7a19b961b8b6275573194827fb52c17908b2e2699b5/whatshap-1.2-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=363927b1d9eb491bd80db6e917dc9b5926e2886f041126a0157c1f852d8ec766 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-03-11T12:16:46,171 Found link https://files.pythonhosted.org/packages/24/ba/a6b7ded0e342f0cdeb268e0e92b1c0812ca9c0804e11efc8c4e7e5cb6be9/whatshap-1.2.tar.gz#sha256=e8d55c5c9a3e0c681f0d4dccdaa9096cbfffc440d9ea9ec6be51918bdaaa87c5 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.2 2022-03-11T12:16:46,171 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/19/36/1423d4adb6f4d7e58f5fdf8c59aaa8b5cec9d73bb5b2450f17f4089e8438/whatshap-1.2.1-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=11a7b10eef76a40dabb98226c774d048c62140d033da474aebb9a5e27b300fb3 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-03-11T12:16:46,172 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/3f/9c/52ce1b726a9b98f628c468b30877edc720c6c8022ae0d13fee6088f894b6/whatshap-1.2.1-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=b53bb0c0b4298622256ca8b32d0c16108f99e7fa8bbf50bab109b6359685e538 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-03-11T12:16:46,173 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/22/c1/d7295d4b3732dc286990b85348401b3bf932bdcb196162f14100472683f3/whatshap-1.2.1-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=08e79b8e86c9b8d47e5a0dac79bac3c66f984d6eb93b9649901b67b1a0545af5 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-03-11T12:16:46,173 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/ff/36/181d416f2c1557879d2647e73964bd0d5d2fd3b79376ec3463435d2363ba/whatshap-1.2.1-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=f152af4c4dc555820596121472bf44f5554370e641d70c332d3de6e624bf5e27 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-03-11T12:16:46,174 Found link https://files.pythonhosted.org/packages/e1/e3/84376a94a15622efc336fe72ffb37d448b91abfe5fa21421684495e30eb9/whatshap-1.2.1.tar.gz#sha256=123a3282fc5e1eacd7fe1bf953735ddc3f0cedacb469f05c3a90233b76ef3cb8 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.2.1 2022-03-11T12:16:46,175 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/34/c8/7365412dc082fc9b1a0415cde547086f44e0196148ec60ffdd49afc8ecf5/whatshap-1.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=3b9b9435649bd3bca482b3080373e4bac506c9aa66bfaf12b97c87b7a814db94 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-03-11T12:16:46,176 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/76/52/dca5eac4abe3642ccf23b7dbbf4283589e4065c13f5bd9240e84c3227b4e/whatshap-1.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=74f46a5449e3945c1c31cf23fe11416bea2db78d12139a74f8f4508e83040b70 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-03-11T12:16:46,176 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/08/df/825622346a1833f3b1fc5b89f613b711eb1003cb2a04986ad3016b22bae3/whatshap-1.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=df881237e1682bcc605d058e8f7fcaa513b65a83538bb19983e67b9aab02e8df (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-03-11T12:16:46,177 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/36/4a/c1dc0eb7ebde0b5e5ad75d202f1c994399ca25bab7a31fe56da18185865f/whatshap-1.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=a4da008e198eb88ef04457f2b8496df897ade042112513dbc67d9420fe85b6bb (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-03-11T12:16:46,178 Found link https://files.pythonhosted.org/packages/14/ad/1e00006ef2a451b8487b267a6e6261472c3730ee9fbf9bf88ab3e33cdb3e/whatshap-1.3.tar.gz#sha256=09545e491f2f1972d6b2b93300a568c904c3f44e564e238245f95b27ef06464c (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.3 2022-03-11T12:16:46,179 Fetching project page and analyzing links: https://www.piwheels.org/simple/whatshap/ 2022-03-11T12:16:46,180 Getting page https://www.piwheels.org/simple/whatshap/ 2022-03-11T12:16:46,182 Found index url https://www.piwheels.org/simple 2022-03-11T12:16:46,418 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.10-cp34-cp34m-linux_armv6l.whl#sha256=4833edfe84ef3c9eeb5c68262dad5be3a637379d59eae98ed10774ee66a5a925 (from https://www.piwheels.org/simple/whatshap/) 2022-03-11T12:16:46,419 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.10-cp34-cp34m-linux_armv7l.whl#sha256=4833edfe84ef3c9eeb5c68262dad5be3a637379d59eae98ed10774ee66a5a925 (from https://www.piwheels.org/simple/whatshap/) 2022-03-11T12:16:46,419 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.11-cp34-cp34m-linux_armv6l.whl#sha256=528f0411be5d1bd6559dd1531b52beb67ca918a09fd418fd2921199f88ff71ef (from https://www.piwheels.org/simple/whatshap/) 2022-03-11T12:16:46,420 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.11-cp34-cp34m-linux_armv7l.whl#sha256=528f0411be5d1bd6559dd1531b52beb67ca918a09fd418fd2921199f88ff71ef (from https://www.piwheels.org/simple/whatshap/) 2022-03-11T12:16:46,420 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.11-cp35-cp35m-linux_armv6l.whl#sha256=48a0027e08f6762e26e61673a253a95ecda25e8f32a31a8cbd3655365c25c051 (from https://www.piwheels.org/simple/whatshap/) 2022-03-11T12:16:46,421 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.11-cp35-cp35m-linux_armv7l.whl#sha256=48a0027e08f6762e26e61673a253a95ecda25e8f32a31a8cbd3655365c25c051 (from https://www.piwheels.org/simple/whatshap/) 2022-03-11T12:16:46,421 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.12-cp34-cp34m-linux_armv6l.whl#sha256=61ca54a67abc75d161b394f41a6a10efa1b7e25ce94a20fb5e17bf768fbcc153 (from https://www.piwheels.org/simple/whatshap/) 2022-03-11T12:16:46,422 Skipping link: No binaries permitted for whatshap: 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https://www.piwheels.org/simple/whatshap/) 2022-03-11T12:16:46,424 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.13-cp34-cp34m-linux_armv7l.whl#sha256=856ee3772161445e2245334076268dca61b504968b90dab43b07943ed6ddeebd (from https://www.piwheels.org/simple/whatshap/) 2022-03-11T12:16:46,425 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.13-cp35-cp35m-linux_armv6l.whl#sha256=7989e2894821071f43ee744ecc59f1abfa98748cf39719c28c881e6098c74037 (from https://www.piwheels.org/simple/whatshap/) 2022-03-11T12:16:46,425 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.13-cp35-cp35m-linux_armv7l.whl#sha256=7989e2894821071f43ee744ecc59f1abfa98748cf39719c28c881e6098c74037 (from https://www.piwheels.org/simple/whatshap/) 2022-03-11T12:16:46,426 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14-cp34-cp34m-linux_armv6l.whl#sha256=3ddde88fb4fed1664ec3d46039aca72142fa5dcde177a40f49c2cec09b407f9f (from https://www.piwheels.org/simple/whatshap/) 2022-03-11T12:16:46,426 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14-cp34-cp34m-linux_armv7l.whl#sha256=3ddde88fb4fed1664ec3d46039aca72142fa5dcde177a40f49c2cec09b407f9f (from https://www.piwheels.org/simple/whatshap/) 2022-03-11T12:16:46,427 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14-cp35-cp35m-linux_armv6l.whl#sha256=e0ac1dca2abae0b88b1fa764b4d4ca853bb6bc4b02de20b09e8d51448b20aafc (from https://www.piwheels.org/simple/whatshap/) 2022-03-11T12:16:46,427 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14-cp35-cp35m-linux_armv7l.whl#sha256=e0ac1dca2abae0b88b1fa764b4d4ca853bb6bc4b02de20b09e8d51448b20aafc (from https://www.piwheels.org/simple/whatshap/) 2022-03-11T12:16:46,428 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14.1-cp34-cp34m-linux_armv6l.whl#sha256=22ddc6e868a47bcdfd91808303be8ad0d952e65ae74767ea3d49bdd16cdfb4f2 (from https://www.piwheels.org/simple/whatshap/) 2022-03-11T12:16:46,428 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14.1-cp34-cp34m-linux_armv7l.whl#sha256=22ddc6e868a47bcdfd91808303be8ad0d952e65ae74767ea3d49bdd16cdfb4f2 (from https://www.piwheels.org/simple/whatshap/) 2022-03-11T12:16:46,429 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14.1-cp35-cp35m-linux_armv6l.whl#sha256=d814d13967bc9b15f994573546cdeed83bac50694e44fb4105c3ae83bbfd97b7 (from https://www.piwheels.org/simple/whatshap/) 2022-03-11T12:16:46,429 Skipping link: No binaries permitted for whatshap: 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https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4) 2022-03-11T12:16:46,439 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp34-cp34m-linux_armv7l.whl#sha256=226c2159db0239fcad3b0d9731ae11ad7f161e18a0f51b5d76fbb7aa02bc5b12 (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4) 2022-03-11T12:16:46,439 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp35-cp35m-linux_armv6l.whl#sha256=a01e2ba831e1062cac18678005ed864422821a147a90381d1d561db6daaa240b (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4) 2022-03-11T12:16:46,440 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp35-cp35m-linux_armv7l.whl#sha256=a01e2ba831e1062cac18678005ed864422821a147a90381d1d561db6daaa240b (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4) 2022-03-11T12:16:46,440 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp37-cp37m-linux_armv6l.whl#sha256=b81040280694883d7079a4b3e449bba14fc4d30f293e9a1d76a1e0578ac01cba (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4) 2022-03-11T12:16:46,441 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp37-cp37m-linux_armv7l.whl#sha256=b81040280694883d7079a4b3e449bba14fc4d30f293e9a1d76a1e0578ac01cba (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4) 2022-03-11T12:16:46,441 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp34-cp34m-linux_armv6l.whl#sha256=78adbda77e2ec4fe0f66ea86826ad8d025f743ba6bbf39d050783ec1cb07c83a (from https://www.piwheels.org/simple/whatshap/) 2022-03-11T12:16:46,442 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp34-cp34m-linux_armv7l.whl#sha256=78adbda77e2ec4fe0f66ea86826ad8d025f743ba6bbf39d050783ec1cb07c83a (from https://www.piwheels.org/simple/whatshap/) 2022-03-11T12:16:46,442 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp35-cp35m-linux_armv6l.whl#sha256=d3ebf8ce2fc15a5397ece9beb236c6e54c2653d414d727f48aae8e025b674a14 (from https://www.piwheels.org/simple/whatshap/) 2022-03-11T12:16:46,443 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp35-cp35m-linux_armv7l.whl#sha256=d3ebf8ce2fc15a5397ece9beb236c6e54c2653d414d727f48aae8e025b674a14 (from https://www.piwheels.org/simple/whatshap/) 2022-03-11T12:16:46,443 Skipping link: not a file: https://www.piwheels.org/simple/whatshap/ 2022-03-11T12:16:46,444 Skipping link: not a file: https://pypi.org/simple/whatshap/ 2022-03-11T12:16:46,483 Given no hashes to check 1 links for project 'whatshap': discarding no candidates 2022-03-11T12:16:46,514 Collecting whatshap==1.3 2022-03-11T12:16:46,518 Created temporary directory: /tmp/pip-unpack-753aq9pq 2022-03-11T12:16:46,926 Downloading whatshap-1.3.tar.gz (5.1 MB) 2022-03-11T12:16:50,044 Added whatshap==1.3 from https://files.pythonhosted.org/packages/14/ad/1e00006ef2a451b8487b267a6e6261472c3730ee9fbf9bf88ab3e33cdb3e/whatshap-1.3.tar.gz#sha256=09545e491f2f1972d6b2b93300a568c904c3f44e564e238245f95b27ef06464c to build tracker '/tmp/pip-req-tracker-7xfx8opp' 2022-03-11T12:16:50,058 Created temporary directory: /tmp/pip-build-env-mbz3jugt 2022-03-11T12:16:50,072 Created temporary directory: /tmp/pip-standalone-pip-ir5cn0ed 2022-03-11T12:16:52,265 Installing build dependencies: started 2022-03-11T12:16:52,268 Running command pip subprocess to install build dependencies 2022-03-11T12:17:02,325 Using pip 22.0.3 from /tmp/pip-standalone-pip-ir5cn0ed/__env_pip__.zip/pip (python 3.7) 2022-03-11T12:17:03,776 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-03-11T12:17:07,743 Collecting setuptools>=43 2022-03-11T12:17:07,990 Using cached https://www.piwheels.org/simple/setuptools/setuptools-60.9.3-py3-none-any.whl (1.1 MB) 2022-03-11T12:17:08,654 Collecting wheel 2022-03-11T12:17:08,689 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-03-11T12:17:09,576 Collecting setuptools_scm 2022-03-11T12:17:09,633 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-6.4.2-py3-none-any.whl (37 kB) 2022-03-11T12:17:12,870 Collecting cython~=0.29.20 2022-03-11T12:17:13,507 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.28-cp37-cp37m-linux_armv7l.whl (2.3 MB) 2022-03-11T12:17:14,231 Collecting packaging>=20.0 2022-03-11T12:17:14,266 Using cached https://www.piwheels.org/simple/packaging/packaging-21.3-py3-none-any.whl (40 kB) 2022-03-11T12:17:14,551 Collecting tomli>=1.0.0 2022-03-11T12:17:14,616 Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB) 2022-03-11T12:17:15,324 Collecting pyparsing!=3.0.5,>=2.0.2 2022-03-11T12:17:15,368 Using cached https://www.piwheels.org/simple/pyparsing/pyparsing-3.0.7-py3-none-any.whl (98 kB) 2022-03-11T12:17:24,917 Installing collected packages: wheel, tomli, setuptools, pyparsing, cython, packaging, setuptools_scm 2022-03-11T12:17:25,194 Creating /tmp/pip-build-env-mbz3jugt/overlay/bin 2022-03-11T12:17:25,199 changing mode of /tmp/pip-build-env-mbz3jugt/overlay/bin/wheel to 755 2022-03-11T12:17:34,666 changing mode of /tmp/pip-build-env-mbz3jugt/overlay/bin/cygdb to 755 2022-03-11T12:17:34,671 changing mode of /tmp/pip-build-env-mbz3jugt/overlay/bin/cython to 755 2022-03-11T12:17:34,675 changing mode of /tmp/pip-build-env-mbz3jugt/overlay/bin/cythonize to 755 2022-03-11T12:17:35,246 Successfully installed cython-0.29.28 packaging-21.3 pyparsing-3.0.7 setuptools-60.9.3 setuptools_scm-6.4.2 tomli-2.0.1 wheel-0.37.1 2022-03-11T12:17:35,422 WARNING: You are using pip version 22.0.3; however, version 22.0.4 is available. 2022-03-11T12:17:35,422 You should consider upgrading via the '/usr/bin/python3 -m pip install --upgrade pip' command. 2022-03-11T12:17:36,016 Installing build dependencies: finished with status 'done' 2022-03-11T12:17:36,042 Getting requirements to build wheel: started 2022-03-11T12:17:36,044 Running command Getting requirements to build wheel 2022-03-11T12:17:40,216 running egg_info 2022-03-11T12:17:40,319 listing git files failed - pretending there aren't any 2022-03-11T12:17:40,508 writing manifest file 'whatshap.egg-info/SOURCES.txt' 2022-03-11T12:17:40,741 Getting requirements to build wheel: finished with status 'done' 2022-03-11T12:17:40,768 Created temporary directory: /tmp/pip-modern-metadata-ot0ywzxj 2022-03-11T12:17:40,774 Preparing metadata (pyproject.toml): started 2022-03-11T12:17:40,776 Running command Preparing metadata (pyproject.toml) 2022-03-11T12:17:44,508 running dist_info 2022-03-11T12:17:44,536 creating /tmp/pip-modern-metadata-ot0ywzxj/whatshap.egg-info 2022-03-11T12:17:44,550 writing manifest file '/tmp/pip-modern-metadata-ot0ywzxj/whatshap.egg-info/SOURCES.txt' 2022-03-11T12:17:44,622 listing git files failed - pretending there aren't any 2022-03-11T12:17:44,689 writing manifest file '/tmp/pip-modern-metadata-ot0ywzxj/whatshap.egg-info/SOURCES.txt' 2022-03-11T12:17:45,081 Preparing metadata (pyproject.toml): finished with status 'done' 2022-03-11T12:17:45,095 Source in /tmp/pip-wheel-nsiim9_f/whatshap_1e2d062da0fb481490e11f1c35363fce has version 1.3, which satisfies requirement whatshap==1.3 from https://files.pythonhosted.org/packages/14/ad/1e00006ef2a451b8487b267a6e6261472c3730ee9fbf9bf88ab3e33cdb3e/whatshap-1.3.tar.gz#sha256=09545e491f2f1972d6b2b93300a568c904c3f44e564e238245f95b27ef06464c 2022-03-11T12:17:45,097 Removed whatshap==1.3 from https://files.pythonhosted.org/packages/14/ad/1e00006ef2a451b8487b267a6e6261472c3730ee9fbf9bf88ab3e33cdb3e/whatshap-1.3.tar.gz#sha256=09545e491f2f1972d6b2b93300a568c904c3f44e564e238245f95b27ef06464c from build tracker '/tmp/pip-req-tracker-7xfx8opp' 2022-03-11T12:17:45,111 Created temporary directory: /tmp/pip-unpack-4kzp388z 2022-03-11T12:17:45,112 Building wheels for collected packages: whatshap 2022-03-11T12:17:45,122 Created temporary directory: /tmp/pip-wheel-jijcmk4d 2022-03-11T12:17:45,122 Destination directory: /tmp/pip-wheel-jijcmk4d 2022-03-11T12:17:45,127 Building wheel for whatshap (pyproject.toml): started 2022-03-11T12:17:45,129 Running command Building wheel for whatshap (pyproject.toml) 2022-03-11T12:17:48,963 running bdist_wheel 2022-03-11T12:17:48,971 running build 2022-03-11T12:17:48,972 running build_py 2022-03-11T12:17:48,981 creating build 2022-03-11T12:17:48,982 creating build/lib.linux-armv7l-3.7 2022-03-11T12:17:48,983 creating build/lib.linux-armv7l-3.7/whatshap 2022-03-11T12:17:48,985 copying whatshap/bam.py -> build/lib.linux-armv7l-3.7/whatshap 2022-03-11T12:17:48,990 copying whatshap/polyphaseplots.py -> build/lib.linux-armv7l-3.7/whatshap 2022-03-11T12:17:48,994 copying whatshap/__init__.py -> build/lib.linux-armv7l-3.7/whatshap 2022-03-11T12:17:48,998 copying whatshap/timer.py -> build/lib.linux-armv7l-3.7/whatshap 2022-03-11T12:17:49,001 copying whatshap/threading.py -> build/lib.linux-armv7l-3.7/whatshap 2022-03-11T12:17:49,006 copying whatshap/variant.py -> build/lib.linux-armv7l-3.7/whatshap 2022-03-11T12:17:49,009 copying whatshap/merge.py -> build/lib.linux-armv7l-3.7/whatshap 2022-03-11T12:17:49,013 copying whatshap/args.py -> build/lib.linux-armv7l-3.7/whatshap 2022-03-11T12:17:49,017 copying whatshap/testhelpers.py -> build/lib.linux-armv7l-3.7/whatshap 2022-03-11T12:17:49,021 copying whatshap/_version.py -> build/lib.linux-armv7l-3.7/whatshap 2022-03-11T12:17:49,024 copying whatshap/pedigree.py -> build/lib.linux-armv7l-3.7/whatshap 2022-03-11T12:17:49,028 copying whatshap/graph.py -> build/lib.linux-armv7l-3.7/whatshap 2022-03-11T12:17:49,032 copying whatshap/variants.py -> build/lib.linux-armv7l-3.7/whatshap 2022-03-11T12:17:49,037 copying whatshap/vcf.py -> build/lib.linux-armv7l-3.7/whatshap 2022-03-11T12:17:49,044 copying whatshap/coverage.py -> build/lib.linux-armv7l-3.7/whatshap 2022-03-11T12:17:49,047 copying whatshap/utils.py -> build/lib.linux-armv7l-3.7/whatshap 2022-03-11T12:17:49,051 copying whatshap/__main__.py -> build/lib.linux-armv7l-3.7/whatshap 2022-03-11T12:17:49,054 copying whatshap/verification.py -> build/lib.linux-armv7l-3.7/whatshap 2022-03-11T12:17:49,060 creating build/lib.linux-armv7l-3.7/whatshap/cli 2022-03-11T12:17:49,061 copying whatshap/cli/stats.py -> build/lib.linux-armv7l-3.7/whatshap/cli 2022-03-11T12:17:49,066 copying whatshap/cli/__init__.py -> build/lib.linux-armv7l-3.7/whatshap/cli 2022-03-11T12:17:49,070 copying whatshap/cli/haplotag.py -> build/lib.linux-armv7l-3.7/whatshap/cli 2022-03-11T12:17:49,075 copying whatshap/cli/unphase.py -> build/lib.linux-armv7l-3.7/whatshap/cli 2022-03-11T12:17:49,079 copying whatshap/cli/find_snv_candidates.py -> build/lib.linux-armv7l-3.7/whatshap/cli 2022-03-11T12:17:49,083 copying whatshap/cli/polyphase.py -> build/lib.linux-armv7l-3.7/whatshap/cli 2022-03-11T12:17:49,090 copying whatshap/cli/phase.py -> build/lib.linux-armv7l-3.7/whatshap/cli 2022-03-11T12:17:49,097 copying whatshap/cli/split.py -> build/lib.linux-armv7l-3.7/whatshap/cli 2022-03-11T12:17:49,102 copying whatshap/cli/genotype.py -> build/lib.linux-armv7l-3.7/whatshap/cli 2022-03-11T12:17:49,107 copying whatshap/cli/compare.py -> build/lib.linux-armv7l-3.7/whatshap/cli 2022-03-11T12:17:49,113 copying whatshap/cli/hapcut2vcf.py -> build/lib.linux-armv7l-3.7/whatshap/cli 2022-03-11T12:17:49,122 running build_ext 2022-03-11T12:17:49,135 creating build/temp.linux-armv7l-3.7 2022-03-11T12:17:49,135 creating build/temp.linux-armv7l-3.7/src 2022-03-11T12:17:49,138 creating build/temp.linux-armv7l-3.7/src/hapchat 2022-03-11T12:17:49,141 creating build/temp.linux-armv7l-3.7/src/polyphase 2022-03-11T12:17:49,143 creating build/temp.linux-armv7l-3.7/whatshap 2022-03-11T12:17:49,144 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/backwardcolumniterator.cpp -o build/temp.linux-armv7l-3.7/src/backwardcolumniterator.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-03-11T12:17:52,352 In file included from /usr/include/c++/8/cassert:44, 2022-03-11T12:17:52,353 from src/backwardcolumniterator.cpp:1: 2022-03-11T12:17:52,353 src/backwardcolumniterator.cpp: In member function ‘void BackwardColumnIterator::jump_to_column(int)’: 2022-03-11T12:17:52,353 src/backwardcolumniterator.cpp:121:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-03-11T12:17:52,354 assert(k < positions->size()); 2022-03-11T12:17:52,354 ~~^~~~~~~~~~~~~~~~~~~ 2022-03-11T12:17:52,356 src/backwardcolumniterator.cpp:140:25: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-03-11T12:17:52,357 assert(active_entry < read->getVariantCount()); 2022-03-11T12:17:52,357 ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-03-11T12:17:56,635 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/binomial.cpp -o build/temp.linux-armv7l-3.7/src/binomial.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-03-11T12:17:56,872 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/columnindexingiterator.cpp -o build/temp.linux-armv7l-3.7/src/columnindexingiterator.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-03-11T12:17:59,001 src/columnindexingiterator.cpp: In member function ‘unsigned int ColumnIndexingIterator::index_forward_projection(unsigned int)’: 2022-03-11T12:17:59,002 src/columnindexingiterator.cpp:90:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-03-11T12:17:59,002 for(int j=0; j< parent->read_ids.size(); ++j) { 2022-03-11T12:17:59,002 ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-03-11T12:17:59,003 src/columnindexingiterator.cpp:92:8: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2022-03-11T12:17:59,004 if(m != -1) { 2022-03-11T12:17:59,004 ~~^~~~~ 2022-03-11T12:17:59,005 src/columnindexingiterator.cpp:89:15: warning: unused variable ‘s’ [-Wunused-variable] 2022-03-11T12:17:59,006 unsigned int s = 1; 2022-03-11T12:17:59,006 ^ 2022-03-11T12:17:59,766 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/columnindexingscheme.cpp -o build/temp.linux-armv7l-3.7/src/columnindexingscheme.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-03-11T12:18:01,865 src/columnindexingscheme.cpp: In constructor ‘ColumnIndexingScheme::ColumnIndexingScheme(const ColumnIndexingScheme*, const std::vector&)’: 2022-03-11T12:18:01,866 src/columnindexingscheme.cpp:22:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-03-11T12:18:01,866 while ((iread_ids.size()) && (j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-03-11T12:18:01,867 while ((iread_ids.size()) && (j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-03-11T12:18:01,872 while ((iread_ids.size()) && (j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-03-11T12:18:01,873 while ((iread_ids.size()) && (j > ColumnIterator::get_next()’: 2022-03-11T12:18:06,618 src/columniterator.cpp:105:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-03-11T12:18:06,618 assert(list_it->active_entry < read->getVariantCount()); 2022-03-11T12:18:06,618 ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-03-11T12:18:06,650 src/columniterator.cpp: In member function ‘void ColumnIterator::jump_to_column(size_t)’: 2022-03-11T12:18:06,651 src/columniterator.cpp:161:25: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-03-11T12:18:06,651 assert(active_entry < read->getVariantCount()); 2022-03-11T12:18:06,651 ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-03-11T12:18:11,047 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/entry.cpp -o build/temp.linux-armv7l-3.7/src/entry.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-03-11T12:18:13,185 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/genotype.cpp -o build/temp.linux-armv7l-3.7/src/genotype.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-03-11T12:18:18,730 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/genotypecolumncostcomputer.cpp -o build/temp.linux-armv7l-3.7/src/genotypecolumncostcomputer.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-03-11T12:18:24,926 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/genotypedistribution.cpp -o build/temp.linux-armv7l-3.7/src/genotypedistribution.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-03-11T12:18:27,296 src/genotypedistribution.cpp: In member function ‘double GenotypeDistribution::errorProbability() const’: 2022-03-11T12:18:27,296 src/genotypedistribution.cpp:55:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-03-11T12:18:27,297 if (i == best_index) continue; 2022-03-11T12:18:27,297 ~~^~~~~~~~~~~~~ 2022-03-11T12:18:29,139 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/genotypedptable.cpp -o build/temp.linux-armv7l-3.7/src/genotypedptable.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-03-11T12:18:33,318 src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::clear_forward_table()’: 2022-03-11T12:18:33,319 src/genotypedptable.cpp:61:12: warning: unused variable ‘column_count’ [-Wunused-variable] 2022-03-11T12:18:33,319 size_t column_count = input_column_iterator.get_column_count(); 2022-03-11T12:18:33,319 ^~~~~~~~~~~~ 2022-03-11T12:18:33,421 src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::compute_index()’: 2022-03-11T12:18:33,422 src/genotypedptable.cpp:91:18: warning: unused variable ‘transmission_configurations’ [-Wunused-variable] 2022-03-11T12:18:33,422 unsigned int transmission_configurations = pow(4, pedigree->triple_count()); 2022-03-11T12:18:33,422 ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-03-11T12:18:33,428 src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::compute_backward_prob()’: 2022-03-11T12:18:33,429 src/genotypedptable.cpp:152:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2022-03-11T12:18:33,429 if ((k>1) && (column_index < column_count-1) && (((column_index+1)%k) != 0)) { 2022-03-11T12:18:33,429 ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2022-03-11T12:18:33,435 src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::compute_forward_prob()’: 2022-03-11T12:18:33,436 src/genotypedptable.cpp:178:12: warning: unused variable ‘k’ [-Wunused-variable] 2022-03-11T12:18:33,436 size_t k = (size_t)sqrt(input_column_iterator.get_column_count()); 2022-03-11T12:18:33,437 ^ 2022-03-11T12:18:43,188 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/genotyper.cpp -o build/temp.linux-armv7l-3.7/src/genotyper.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-03-11T12:18:50,676 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/graycodes.cpp -o build/temp.linux-armv7l-3.7/src/graycodes.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-03-11T12:18:52,824 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/hapchat/balancedcombinations.cpp -o build/temp.linux-armv7l-3.7/src/hapchat/balancedcombinations.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-03-11T12:19:02,334 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/hapchat/basictypes.cpp -o build/temp.linux-armv7l-3.7/src/hapchat/basictypes.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-03-11T12:19:05,792 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/hapchat/binomialcoefficient.cpp -o build/temp.linux-armv7l-3.7/src/hapchat/binomialcoefficient.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-03-11T12:19:11,760 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/hapchat/hapchatcolumniterator.cpp -o build/temp.linux-armv7l-3.7/src/hapchat/hapchatcolumniterator.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-03-11T12:19:16,339 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/hapchat/hapchatcore.cpp -o build/temp.linux-armv7l-3.7/src/hapchat/hapchatcore.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-03-11T12:19:20,562 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::run_core()’: 2022-03-11T12:19:20,563 src/hapchat/hapchatcore.cpp:145:11: warning: variable ‘counter_columns’ set but not used [-Wunused-but-set-variable] 2022-03-11T12:19:20,563 Counter counter_columns; 2022-03-11T12:19:20,564 ^~~~~~~~~~~~~~~ 2022-03-11T12:19:20,591 src/hapchat/hapchatcore.cpp: In member function ‘bool HapChatCore::check_end(HapChatColumnIterator, const std::vector >&, const Pointer&, const bool&)’: 2022-03-11T12:19:20,591 src/hapchat/hapchatcore.cpp:208:74: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2022-03-11T12:19:20,592 return (!re_run && (hap.is_ended() && (input[pointer][0].get_read_id() == -1))); 2022-03-11T12:19:20,592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2022-03-11T12:19:20,847 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::dp(const constants_t&, std::vector&, std::vector&, Counter&, Cost&, Counter&, Counter&, Counter&, Counter&, HapChatColumnIterator)’: 2022-03-11T12:19:20,848 src/hapchat/hapchatcore.cpp:939:8: warning: unused variable ‘old_k’ [-Wunused-variable] 2022-03-11T12:19:20,848 int old_k = k_j[input_pointer]; 2022-03-11T12:19:20,849 ^~~~~ 2022-03-11T12:19:20,884 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::intersect(const Column&, const Column&, const Pointer&, std::vector >&, std::vector >&, std::vector >&, std::vector&, const bool&)’: 2022-03-11T12:19:20,884 src/hapchat/hapchatcore.cpp:1114:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2022-03-11T12:19:20,885 (colJ[j].get_read_id() != -1) && 2022-03-11T12:19:20,885 ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2022-03-11T12:19:20,885 src/hapchat/hapchatcore.cpp:1115:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2022-03-11T12:19:20,886 (colQ[i].get_read_id() != -1)) { 2022-03-11T12:19:20,886 ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2022-03-11T12:19:20,889 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::represent_column(const Column&, BitColumn&, Counter&, BitColumn&, Counter&)’: 2022-03-11T12:19:20,889 src/hapchat/hapchatcore.cpp:1159:58: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2022-03-11T12:19:20,890 while(cov < column.size() && column[cov].get_read_id() != -1) { 2022-03-11T12:19:20,890 ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2022-03-11T12:19:20,898 src/hapchat/hapchatcore.cpp: In member function ‘int HapChatCore::compute_active_common(const Column&, const Column&, unsigned int&)’: 2022-03-11T12:19:20,899 src/hapchat/hapchatcore.cpp:1294:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2022-03-11T12:19:20,899 (colJ[j].get_read_id() != -1) && 2022-03-11T12:19:20,900 ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2022-03-11T12:19:20,900 src/hapchat/hapchatcore.cpp:1295:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2022-03-11T12:19:20,901 (colQ[i].get_read_id() != -1)) { 2022-03-11T12:19:20,901 ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2022-03-11T12:19:20,905 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::insert_col_and_update(std::vector >&, std::vector&, std::vector&, std::vector&, const Pointer&, const Column&, std::vector&, const Counter&)’: 2022-03-11T12:19:20,905 src/hapchat/hapchatcore.cpp:1350:67: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2022-03-11T12:19:20,906 if(i < input[pointer].size() && input[pointer][i].get_read_id() != -1) 2022-03-11T12:19:20,906 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2022-03-11T12:19:22,856 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/indexset.cpp -o build/temp.linux-armv7l-3.7/src/indexset.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-03-11T12:19:26,399 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/pedigree.cpp -o build/temp.linux-armv7l-3.7/src/pedigree.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-03-11T12:19:29,140 In file included from /usr/include/c++/8/cassert:44, 2022-03-11T12:19:29,140 from src/pedigree.cpp:4: 2022-03-11T12:19:29,141 src/pedigree.cpp: In member function ‘void Pedigree::addIndividual(unsigned int, std::vector, std::vector)’: 2022-03-11T12:19:29,141 src/pedigree.cpp:32:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-03-11T12:19:29,141 assert(genotypes.size() == variant_count); 2022-03-11T12:19:29,142 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2022-03-11T12:19:29,142 src/pedigree.cpp:33:37: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-03-11T12:19:29,143 assert(genotype_likelihoods.size() == variant_count); 2022-03-11T12:19:29,143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2022-03-11T12:19:29,161 src/pedigree.cpp: In member function ‘const Genotype* Pedigree::get_genotype_by_id(unsigned int, unsigned int) const’: 2022-03-11T12:19:29,162 src/pedigree.cpp:70:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2022-03-11T12:19:29,162 assert(variant_index < variant_count); 2022-03-11T12:19:29,163 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2022-03-11T12:19:29,163 src/pedigree.cpp: In member function ‘const PhredGenotypeLikelihoods* Pedigree::get_genotype_likelihoods_by_id(unsigned int, unsigned int) const’: 2022-03-11T12:19:29,164 src/pedigree.cpp:81:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2022-03-11T12:19:29,164 assert(variant_index < variant_count); 2022-03-11T12:19:29,164 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2022-03-11T12:19:29,188 src/pedigree.cpp: In member function ‘std::__cxx11::string Pedigree::toString() const’: 2022-03-11T12:19:29,189 src/pedigree.cpp:112:21: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare] 2022-03-11T12:19:29,189 for (size_t j=0; j&, size_t, const std::vector&, const Pedigree*, const PedigreePartitions&, bool)’: 2022-03-11T12:19:38,635 src/pedigreecolumncostcomputer.cpp:25:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2022-03-11T12:19:38,635 for (unsigned int i = 0; i < (1< PedigreeColumnCostComputer::get_alleles()’: 2022-03-11T12:19:38,701 src/pedigreecolumncostcomputer.cpp:119:15: warning: unused variable ‘second_best_cost’ [-Wunused-variable] 2022-03-11T12:19:38,701 unsigned int second_best_cost = numeric_limits < unsigned int >::max(); 2022-03-11T12:19:38,702 ^~~~~~~~~~~~~~~~ 2022-03-11T12:19:41,678 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/pedigreedptable.cpp -o build/temp.linux-armv7l-3.7/src/pedigreedptable.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-03-11T12:19:56,797 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/pedigreepartitions.cpp -o build/temp.linux-armv7l-3.7/src/pedigreepartitions.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-03-11T12:20:01,029 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/phredgenotypelikelihoods.cpp -o build/temp.linux-armv7l-3.7/src/phredgenotypelikelihoods.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-03-11T12:20:05,040 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/polyphase/clustereditingsolution.cpp -o build/temp.linux-armv7l-3.7/src/polyphase/clustereditingsolution.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-03-11T12:20:07,922 In file included from src/polyphase/clustereditingsolution.h:4, 2022-03-11T12:20:07,923 from src/polyphase/clustereditingsolution.cpp:1: 2022-03-11T12:20:07,923 src/polyphase/staticsparsegraph.h: In member function ‘std::__cxx11::string StaticSparseGraph::int2bin(uint64_t)’: 2022-03-11T12:20:07,924 src/polyphase/staticsparsegraph.h:225:33: warning: left shift count >= width of type [-Wshift-count-overflow] 2022-03-11T12:20:07,924 uint64_t mask = (1UL << 63); // fill in values right-to-left 2022-03-11T12:20:07,924 ^~ 2022-03-11T12:20:09,090 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/polyphase/clustereditingsolver.cpp -o build/temp.linux-armv7l-3.7/src/polyphase/clustereditingsolver.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-03-11T12:20:11,992 In file included from src/polyphase/clustereditingsolution.h:4, 2022-03-11T12:20:11,993 from src/polyphase/clustereditingsolver.h:10, 2022-03-11T12:20:11,993 from src/polyphase/clustereditingsolver.cpp:1: 2022-03-11T12:20:11,993 src/polyphase/staticsparsegraph.h: In member function ‘std::__cxx11::string StaticSparseGraph::int2bin(uint64_t)’: 2022-03-11T12:20:11,994 src/polyphase/staticsparsegraph.h:225:33: warning: left shift count >= width of type [-Wshift-count-overflow] 2022-03-11T12:20:11,994 uint64_t mask = (1UL << 63); // fill in values right-to-left 2022-03-11T12:20:11,994 ^~ 2022-03-11T12:20:14,599 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/polyphase/edgeheap.cpp -o build/temp.linux-armv7l-3.7/src/polyphase/edgeheap.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-03-11T12:20:17,487 In file included from src/polyphase/edgeheap.h:6, 2022-03-11T12:20:17,487 from src/polyphase/edgeheap.cpp:1: 2022-03-11T12:20:17,488 src/polyphase/staticsparsegraph.h: In member function ‘std::__cxx11::string StaticSparseGraph::int2bin(uint64_t)’: 2022-03-11T12:20:17,488 src/polyphase/staticsparsegraph.h:225:33: warning: left shift count >= width of type [-Wshift-count-overflow] 2022-03-11T12:20:17,488 uint64_t mask = (1UL << 63); // fill in values right-to-left 2022-03-11T12:20:17,489 ^~ 2022-03-11T12:20:23,573 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/polyphase/haplothreader.cpp -o build/temp.linux-armv7l-3.7/src/polyphase/haplothreader.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-03-11T12:20:26,253 In file included from src/polyphase/haplothreader.cpp:1: 2022-03-11T12:20:26,254 src/polyphase/haplothreader.h:31:53: warning: left shift count >= width of type [-Wshift-count-overflow] 2022-03-11T12:20:26,254 31UL << 20, 31UL << 25, 31UL << 30, 31UL << 35, 2022-03-11T12:20:26,254 ^~ 2022-03-11T12:20:26,255 src/polyphase/haplothreader.h:32:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2022-03-11T12:20:26,255 31UL << 40, 31UL << 45, 31UL << 50, 31UL << 55}; 2022-03-11T12:20:26,255 ^~ 2022-03-11T12:20:26,256 src/polyphase/haplothreader.h:32:29: warning: left shift count >= width of type [-Wshift-count-overflow] 2022-03-11T12:20:26,256 31UL << 40, 31UL << 45, 31UL << 50, 31UL << 55}; 2022-03-11T12:20:26,257 ^~ 2022-03-11T12:20:26,257 src/polyphase/haplothreader.h:32:41: warning: left shift count >= width of type [-Wshift-count-overflow] 2022-03-11T12:20:26,257 31UL << 40, 31UL << 45, 31UL << 50, 31UL << 55}; 2022-03-11T12:20:26,257 ^~ 2022-03-11T12:20:26,258 src/polyphase/haplothreader.h:32:53: warning: left shift count >= width of type [-Wshift-count-overflow] 2022-03-11T12:20:26,258 31UL << 40, 31UL << 45, 31UL << 50, 31UL << 55}; 2022-03-11T12:20:26,258 ^~ 2022-03-11T12:20:26,259 src/polyphase/haplothreader.h:31:50: error: right operand of shift expression ‘(31 << 35)’ is >= than the precision of the left operand [-fpermissive] 2022-03-11T12:20:26,259 31UL << 20, 31UL << 25, 31UL << 30, 31UL << 35, 2022-03-11T12:20:26,259 ~~~~~^~~~~ 2022-03-11T12:20:27,099 src/polyphase/haplothreader.cpp: In member function ‘std::vector > HaploThreader::computePaths(Position, Position, const std::vector >&, const std::vector >&, const std::vector >&, const std::vector >&, Position) const’: 2022-03-11T12:20:27,099 src/polyphase/haplothreader.cpp:253:18: warning: unused variable ‘allRows’ [-Wunused-variable] 2022-03-11T12:20:27,100 uint32_t allRows = column.size(); 2022-03-11T12:20:27,100 ^~~~~~~ 2022-03-11T12:20:28,673 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2022-03-11T12:20:28,909 ERROR: [present-diagnostic] Building wheel for whatshap (pyproject.toml) exited with 1 2022-03-11T12:20:28,953 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.7/dist-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmplthqd7ji[/] 2022-03-11T12:20:28,953 [bold magenta]cwd[/]: /tmp/pip-wheel-nsiim9_f/whatshap_1e2d062da0fb481490e11f1c35363fce 2022-03-11T12:20:28,954 Building wheel for whatshap (pyproject.toml): finished with status 'error' 2022-03-11T12:20:28,959 ERROR: Failed building wheel for whatshap 2022-03-11T12:20:28,963 Failed to build whatshap 2022-03-11T12:20:28,966 ERROR: Failed to build one or more wheels 2022-03-11T12:20:28,968 Exception information: 2022-03-11T12:20:28,968 Traceback (most recent call last): 2022-03-11T12:20:28,968 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/base_command.py", line 167, in exc_logging_wrapper 2022-03-11T12:20:28,968 status = run_func(*args) 2022-03-11T12:20:28,968 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2022-03-11T12:20:28,968 return func(self, options, args) 2022-03-11T12:20:28,968 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/commands/wheel.py", line 176, in run 2022-03-11T12:20:28,968 raise CommandError("Failed to build one or more wheels") 2022-03-11T12:20:28,968 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2022-03-11T12:20:28,976 Removed build tracker: '/tmp/pip-req-tracker-7xfx8opp'