2022-03-17T21:13:06,729 Created temporary directory: /tmp/pip-ephem-wheel-cache-kedzwv7v 2022-03-17T21:13:06,734 Created temporary directory: /tmp/pip-req-tracker-h1ptmf3e 2022-03-17T21:13:06,735 Initialized build tracking at /tmp/pip-req-tracker-h1ptmf3e 2022-03-17T21:13:06,735 Created build tracker: /tmp/pip-req-tracker-h1ptmf3e 2022-03-17T21:13:06,736 Entered build tracker: /tmp/pip-req-tracker-h1ptmf3e 2022-03-17T21:13:06,737 Created temporary directory: /tmp/pip-wheel-eqnliy4c 2022-03-17T21:13:06,805 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-03-17T21:13:06,819 2 location(s) to search for versions of pdm-utils: 2022-03-17T21:13:06,819 * https://pypi.org/simple/pdm-utils/ 2022-03-17T21:13:06,819 * https://www.piwheels.org/simple/pdm-utils/ 2022-03-17T21:13:06,820 Fetching project page and analyzing links: https://pypi.org/simple/pdm-utils/ 2022-03-17T21:13:06,821 Getting page https://pypi.org/simple/pdm-utils/ 2022-03-17T21:13:06,824 Found 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2022-03-17T21:13:07,174 Found link https://files.pythonhosted.org/packages/06/f0/00332dc19aa222623d49e48b6f3fdc49e96a6c3db7c87f0977841ec70fec/pdm_utils-0.9.19.tar.gz#sha256=7b8c9da4ab299bc6b3af23a69fd26c8a6396b24ea09cb9509e7dc1f3eb2944bc (from https://pypi.org/simple/pdm-utils/) (requires-python:>=3.6), version: 0.9.19 2022-03-17T21:13:07,176 Fetching project page and analyzing links: https://www.piwheels.org/simple/pdm-utils/ 2022-03-17T21:13:07,176 Getting page https://www.piwheels.org/simple/pdm-utils/ 2022-03-17T21:13:07,178 Found index url https://www.piwheels.org/simple 2022-03-17T21:13:07,433 Skipping link: No binaries permitted for pdm-utils: https://www.piwheels.org/simple/pdm-utils/pdm_utils-0.0.10-py3-none-any.whl#sha256=da3b3d1aa1211875d29197bf7fc9009405c1b58a6300b22e99ea0cfdd5df11e9 (from https://www.piwheels.org/simple/pdm-utils/) (requires-python:>=3.6) 2022-03-17T21:13:07,434 Skipping link: No binaries permitted for pdm-utils: 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https://www.piwheels.org/simple/pdm-utils/pdm_utils-0.9.9-py3-none-any.whl#sha256=ebd708b44afdbef31497b8e4474a06677e7f9b42d94df298cdc4657df3c2de17 (from https://www.piwheels.org/simple/pdm-utils/) (requires-python:>=3.6) 2022-03-17T21:13:07,469 Skipping link: not a file: https://www.piwheels.org/simple/pdm-utils/ 2022-03-17T21:13:07,470 Skipping link: not a file: https://pypi.org/simple/pdm-utils/ 2022-03-17T21:13:07,529 Given no hashes to check 1 links for project 'pdm-utils': discarding no candidates 2022-03-17T21:13:07,561 Collecting pdm-utils==0.9.19 2022-03-17T21:13:07,565 Created temporary directory: /tmp/pip-unpack-jsuzsuwj 2022-03-17T21:13:08,004 Downloading pdm_utils-0.9.19.tar.gz (237 kB) 2022-03-17T21:13:08,522 Added pdm-utils==0.9.19 from https://files.pythonhosted.org/packages/06/f0/00332dc19aa222623d49e48b6f3fdc49e96a6c3db7c87f0977841ec70fec/pdm_utils-0.9.19.tar.gz#sha256=7b8c9da4ab299bc6b3af23a69fd26c8a6396b24ea09cb9509e7dc1f3eb2944bc to build tracker '/tmp/pip-req-tracker-h1ptmf3e' 2022-03-17T21:13:08,530 Created temporary directory: /tmp/pip-build-env-x5pj8233 2022-03-17T21:13:08,544 Created temporary directory: /tmp/pip-standalone-pip-h1hsjfns 2022-03-17T21:13:10,803 Installing build dependencies: started 2022-03-17T21:13:10,805 Running command pip subprocess to install build dependencies 2022-03-17T21:13:20,884 Using pip 22.0.3 from /tmp/pip-standalone-pip-h1hsjfns/__env_pip__.zip/pip (python 3.7) 2022-03-17T21:13:22,262 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-03-17T21:13:26,415 Collecting setuptools 2022-03-17T21:13:26,661 Using cached https://www.piwheels.org/simple/setuptools/setuptools-60.10.0-py3-none-any.whl (1.1 MB) 2022-03-17T21:13:27,302 Collecting wheel 2022-03-17T21:13:27,338 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-03-17T21:13:31,975 Installing collected packages: wheel, setuptools 2022-03-17T21:13:32,248 Creating /tmp/pip-build-env-x5pj8233/overlay/bin 2022-03-17T21:13:32,252 changing mode of /tmp/pip-build-env-x5pj8233/overlay/bin/wheel to 755 2022-03-17T21:13:36,155 Successfully installed setuptools-60.10.0 wheel-0.37.1 2022-03-17T21:13:36,323 WARNING: You are using pip version 22.0.3; however, version 22.0.4 is available. 2022-03-17T21:13:36,323 You should consider upgrading via the '/usr/bin/python3 -m pip install --upgrade pip' command. 2022-03-17T21:13:36,794 Installing build dependencies: finished with status 'done' 2022-03-17T21:13:36,821 Getting requirements to build wheel: started 2022-03-17T21:13:36,823 Running command Getting requirements to build wheel 2022-03-17T21:13:38,748 running egg_info 2022-03-17T21:13:38,819 writing manifest file 'src/pdm_utils.egg-info/SOURCES.txt' 2022-03-17T21:13:38,948 Getting requirements to build wheel: finished with status 'done' 2022-03-17T21:13:38,969 Created temporary directory: /tmp/pip-modern-metadata-qy25ia0n 2022-03-17T21:13:38,974 Preparing metadata (pyproject.toml): started 2022-03-17T21:13:38,976 Running command Preparing metadata (pyproject.toml) 2022-03-17T21:13:40,748 running dist_info 2022-03-17T21:13:40,777 creating /tmp/pip-modern-metadata-qy25ia0n/pdm_utils.egg-info 2022-03-17T21:13:40,791 writing manifest file '/tmp/pip-modern-metadata-qy25ia0n/pdm_utils.egg-info/SOURCES.txt' 2022-03-17T21:13:40,832 writing manifest file '/tmp/pip-modern-metadata-qy25ia0n/pdm_utils.egg-info/SOURCES.txt' 2022-03-17T21:13:41,108 Preparing metadata (pyproject.toml): finished with status 'done' 2022-03-17T21:13:41,123 Source in /tmp/pip-wheel-eqnliy4c/pdm-utils_3818aeb3af2a40789509c95efc1bf719 has version 0.9.19, which satisfies requirement pdm-utils==0.9.19 from https://files.pythonhosted.org/packages/06/f0/00332dc19aa222623d49e48b6f3fdc49e96a6c3db7c87f0977841ec70fec/pdm_utils-0.9.19.tar.gz#sha256=7b8c9da4ab299bc6b3af23a69fd26c8a6396b24ea09cb9509e7dc1f3eb2944bc 2022-03-17T21:13:41,125 Removed pdm-utils==0.9.19 from https://files.pythonhosted.org/packages/06/f0/00332dc19aa222623d49e48b6f3fdc49e96a6c3db7c87f0977841ec70fec/pdm_utils-0.9.19.tar.gz#sha256=7b8c9da4ab299bc6b3af23a69fd26c8a6396b24ea09cb9509e7dc1f3eb2944bc from build tracker '/tmp/pip-req-tracker-h1ptmf3e' 2022-03-17T21:13:41,138 Created temporary directory: /tmp/pip-unpack-i2soehvv 2022-03-17T21:13:41,139 Building wheels for collected packages: pdm-utils 2022-03-17T21:13:41,148 Created temporary directory: /tmp/pip-wheel-80_zq1zu 2022-03-17T21:13:41,149 Destination directory: /tmp/pip-wheel-80_zq1zu 2022-03-17T21:13:41,153 Building wheel for pdm-utils (pyproject.toml): started 2022-03-17T21:13:41,155 Running command Building wheel for pdm-utils (pyproject.toml) 2022-03-17T21:13:43,018 running bdist_wheel 2022-03-17T21:13:43,447 running build 2022-03-17T21:13:43,448 running build_py 2022-03-17T21:13:43,458 creating build 2022-03-17T21:13:43,459 creating build/lib 2022-03-17T21:13:43,460 creating build/lib/pdm_utils 2022-03-17T21:13:43,463 copying src/pdm_utils/__init__.py -> build/lib/pdm_utils 2022-03-17T21:13:43,467 copying src/pdm_utils/run.py -> build/lib/pdm_utils 2022-03-17T21:13:43,471 copying src/pdm_utils/__main__.py -> build/lib/pdm_utils 2022-03-17T21:13:43,476 creating build/lib/pdm_utils/constants 2022-03-17T21:13:43,478 copying src/pdm_utils/constants/__init__.py -> build/lib/pdm_utils/constants 2022-03-17T21:13:43,482 copying src/pdm_utils/constants/db_schema_0.py -> build/lib/pdm_utils/constants 2022-03-17T21:13:43,486 copying src/pdm_utils/constants/constants.py -> build/lib/pdm_utils/constants 2022-03-17T21:13:43,491 copying src/pdm_utils/constants/schema_conversions.py -> build/lib/pdm_utils/constants 2022-03-17T21:13:43,496 copying src/pdm_utils/constants/eval_descriptions.py -> build/lib/pdm_utils/constants 2022-03-17T21:13:43,503 creating build/lib/pdm_utils/classes 2022-03-17T21:13:43,505 copying src/pdm_utils/classes/genometriad.py -> build/lib/pdm_utils/classes 2022-03-17T21:13:43,509 copying src/pdm_utils/classes/trnascansehandler.py -> build/lib/pdm_utils/classes 2022-03-17T21:13:43,513 copying src/pdm_utils/classes/filter.py -> build/lib/pdm_utils/classes 2022-03-17T21:13:43,518 copying src/pdm_utils/classes/bundle.py -> build/lib/pdm_utils/classes 2022-03-17T21:13:43,522 copying src/pdm_utils/classes/__init__.py -> build/lib/pdm_utils/classes 2022-03-17T21:13:43,525 copying src/pdm_utils/classes/cds.py -> build/lib/pdm_utils/classes 2022-03-17T21:13:43,532 copying src/pdm_utils/classes/ticket.py -> build/lib/pdm_utils/classes 2022-03-17T21:13:43,536 copying src/pdm_utils/classes/trna.py -> build/lib/pdm_utils/classes 2022-03-17T21:13:43,546 copying src/pdm_utils/classes/genome.py -> build/lib/pdm_utils/classes 2022-03-17T21:13:43,553 copying src/pdm_utils/classes/cdspair.py -> build/lib/pdm_utils/classes 2022-03-17T21:13:43,556 copying src/pdm_utils/classes/aragornhandler.py -> build/lib/pdm_utils/classes 2022-03-17T21:13:43,560 copying src/pdm_utils/classes/genomepair.py -> build/lib/pdm_utils/classes 2022-03-17T21:13:43,564 copying src/pdm_utils/classes/randomfieldupdatehandler.py -> build/lib/pdm_utils/classes 2022-03-17T21:13:43,568 copying src/pdm_utils/classes/dbcomparesummary.py -> build/lib/pdm_utils/classes 2022-03-17T21:13:43,572 copying src/pdm_utils/classes/evaluation.py -> build/lib/pdm_utils/classes 2022-03-17T21:13:43,575 copying src/pdm_utils/classes/progressbar.py -> build/lib/pdm_utils/classes 2022-03-17T21:13:43,578 copying src/pdm_utils/classes/tmrna.py -> build/lib/pdm_utils/classes 2022-03-17T21:13:43,584 copying src/pdm_utils/classes/source.py -> build/lib/pdm_utils/classes 2022-03-17T21:13:43,587 copying src/pdm_utils/classes/fileio.py -> build/lib/pdm_utils/classes 2022-03-17T21:13:43,591 copying src/pdm_utils/classes/alchemyhandler.py -> build/lib/pdm_utils/classes 2022-03-17T21:13:43,599 creating build/lib/pdm_utils/functions 2022-03-17T21:13:43,600 copying src/pdm_utils/functions/parallelize.py -> build/lib/pdm_utils/functions 2022-03-17T21:13:43,603 copying src/pdm_utils/functions/url_basic.py -> build/lib/pdm_utils/functions 2022-03-17T21:13:43,607 copying src/pdm_utils/functions/phameration.py -> build/lib/pdm_utils/functions 2022-03-17T21:13:43,612 copying src/pdm_utils/functions/annotation.py -> build/lib/pdm_utils/functions 2022-03-17T21:13:43,616 copying src/pdm_utils/functions/__init__.py -> build/lib/pdm_utils/functions 2022-03-17T21:13:43,618 copying src/pdm_utils/functions/phagesdb.py -> build/lib/pdm_utils/functions 2022-03-17T21:13:43,622 copying src/pdm_utils/functions/eval_modes.py -> build/lib/pdm_utils/functions 2022-03-17T21:13:43,625 copying src/pdm_utils/functions/pipelines_basic.py -> build/lib/pdm_utils/functions 2022-03-17T21:13:43,629 copying src/pdm_utils/functions/tickets.py -> build/lib/pdm_utils/functions 2022-03-17T21:13:43,633 copying src/pdm_utils/functions/mysqldb_basic.py -> build/lib/pdm_utils/functions 2022-03-17T21:13:43,637 copying src/pdm_utils/functions/cartography.py -> build/lib/pdm_utils/functions 2022-03-17T21:13:43,640 copying src/pdm_utils/functions/multithread.py -> build/lib/pdm_utils/functions 2022-03-17T21:13:43,645 copying src/pdm_utils/functions/mysqldb.py -> build/lib/pdm_utils/functions 2022-03-17T21:13:43,650 copying src/pdm_utils/functions/server.py -> build/lib/pdm_utils/functions 2022-03-17T21:13:43,653 copying src/pdm_utils/functions/ncbi.py -> build/lib/pdm_utils/functions 2022-03-17T21:13:43,657 copying src/pdm_utils/functions/pham_alignment.py -> build/lib/pdm_utils/functions 2022-03-17T21:13:43,661 copying src/pdm_utils/functions/querying.py -> build/lib/pdm_utils/functions 2022-03-17T21:13:43,667 copying src/pdm_utils/functions/configfile.py -> build/lib/pdm_utils/functions 2022-03-17T21:13:43,670 copying src/pdm_utils/functions/parsing.py -> build/lib/pdm_utils/functions 2022-03-17T21:13:43,674 copying src/pdm_utils/functions/basic.py -> build/lib/pdm_utils/functions 2022-03-17T21:13:43,680 copying src/pdm_utils/functions/fileio.py -> build/lib/pdm_utils/functions 2022-03-17T21:13:43,685 copying src/pdm_utils/functions/flat_files.py -> build/lib/pdm_utils/functions 2022-03-17T21:13:43,690 copying src/pdm_utils/functions/pipeline_shells.py -> build/lib/pdm_utils/functions 2022-03-17T21:13:43,697 creating build/lib/pdm_utils/pipelines 2022-03-17T21:13:43,699 copying src/pdm_utils/pipelines/find_domains.py -> build/lib/pdm_utils/pipelines 2022-03-17T21:13:43,705 copying src/pdm_utils/pipelines/revise.py -> build/lib/pdm_utils/pipelines 2022-03-17T21:13:43,711 copying src/pdm_utils/pipelines/export_db.py -> build/lib/pdm_utils/pipelines 2022-03-17T21:13:43,716 copying src/pdm_utils/pipelines/compare_db.py -> build/lib/pdm_utils/pipelines 2022-03-17T21:13:43,723 copying src/pdm_utils/pipelines/__init__.py -> build/lib/pdm_utils/pipelines 2022-03-17T21:13:43,727 copying src/pdm_utils/pipelines/pham_review.py -> build/lib/pdm_utils/pipelines 2022-03-17T21:13:43,731 copying src/pdm_utils/pipelines/update_field.py -> build/lib/pdm_utils/pipelines 2022-03-17T21:13:43,735 copying src/pdm_utils/pipelines/get_data.py -> build/lib/pdm_utils/pipelines 2022-03-17T21:13:43,741 copying src/pdm_utils/pipelines/phamerate.py -> build/lib/pdm_utils/pipelines 2022-03-17T21:13:43,746 copying src/pdm_utils/pipelines/get_db.py -> build/lib/pdm_utils/pipelines 2022-03-17T21:13:43,750 copying src/pdm_utils/pipelines/push_db.py -> build/lib/pdm_utils/pipelines 2022-03-17T21:13:43,754 copying src/pdm_utils/pipelines/pham_finder.py -> build/lib/pdm_utils/pipelines 2022-03-17T21:13:43,759 copying src/pdm_utils/pipelines/convert_db.py -> build/lib/pdm_utils/pipelines 2022-03-17T21:13:43,763 copying src/pdm_utils/pipelines/get_gb_records.py -> build/lib/pdm_utils/pipelines 2022-03-17T21:13:43,767 copying src/pdm_utils/pipelines/freeze_db.py -> build/lib/pdm_utils/pipelines 2022-03-17T21:13:43,771 copying src/pdm_utils/pipelines/import_genome.py -> build/lib/pdm_utils/pipelines 2022-03-17T21:13:43,806 running install 2022-03-17T21:13:43,868 running install_lib 2022-03-17T21:13:43,876 creating build/bdist.linux-armv7l 2022-03-17T21:13:43,876 creating build/bdist.linux-armv7l/wheel 2022-03-17T21:13:43,880 creating build/bdist.linux-armv7l/wheel/pdm_utils 2022-03-17T21:13:43,883 creating build/bdist.linux-armv7l/wheel/pdm_utils/constants 2022-03-17T21:13:43,912 creating build/bdist.linux-armv7l/wheel/pdm_utils/classes 2022-03-17T21:13:44,003 creating build/bdist.linux-armv7l/wheel/pdm_utils/functions 2022-03-17T21:13:44,109 creating build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2022-03-17T21:13:44,187 running install_egg_info 2022-03-17T21:13:44,225 running egg_info 2022-03-17T21:13:44,281 writing manifest file 'src/pdm_utils.egg-info/SOURCES.txt' 2022-03-17T21:13:44,284 Copying src/pdm_utils.egg-info to build/bdist.linux-armv7l/wheel/pdm_utils-0.9.19-py3.7.egg-info 2022-03-17T21:13:44,310 running install_scripts 2022-03-17T21:13:45,107 Building wheel for pdm-utils (pyproject.toml): finished with status 'done' 2022-03-17T21:13:45,138 Created wheel for pdm-utils: filename=pdm_utils-0.9.19-py3-none-any.whl size=265663 sha256=f82c603ee55543d1e2008f983d15c1a2f4d35c22e711c6494205506eb6e2f6ef 2022-03-17T21:13:45,140 Stored in directory: /tmp/pip-ephem-wheel-cache-kedzwv7v/wheels/46/14/8c/533d3fe7ac719aab97a8c8ec850d3ff351e2745c627ad1f252 2022-03-17T21:13:45,170 Successfully built pdm-utils 2022-03-17T21:13:45,197 Removed build tracker: '/tmp/pip-req-tracker-h1ptmf3e'