2022-03-18T14:54:17,417 Created temporary directory: /tmp/pip-ephem-wheel-cache-q33s10gt 2022-03-18T14:54:17,423 Created temporary directory: /tmp/pip-req-tracker-zgomjhcz 2022-03-18T14:54:17,424 Initialized build tracking at /tmp/pip-req-tracker-zgomjhcz 2022-03-18T14:54:17,425 Created build tracker: /tmp/pip-req-tracker-zgomjhcz 2022-03-18T14:54:17,425 Entered build tracker: /tmp/pip-req-tracker-zgomjhcz 2022-03-18T14:54:17,426 Created temporary directory: /tmp/pip-wheel-shzzw4d9 2022-03-18T14:54:17,481 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-03-18T14:54:17,486 2 location(s) to search for versions of sequana: 2022-03-18T14:54:17,486 * https://pypi.org/simple/sequana/ 2022-03-18T14:54:17,486 * https://www.piwheels.org/simple/sequana/ 2022-03-18T14:54:17,486 Fetching project page and analyzing links: https://pypi.org/simple/sequana/ 2022-03-18T14:54:17,489 Getting page https://pypi.org/simple/sequana/ 2022-03-18T14:54:17,493 Found index url 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(from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,302 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.0-py3-none-any.whl#sha256=979f04997f10759229e1cc7030a78f086ca36d54a9a68d48743734700cc907f6 (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,303 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.10.0-py3-none-any.whl#sha256=76bb00734b26314836e4c283c3406e597c96626ba9b367ba50e4f0aadf66c2d6 (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,304 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.1-py3-none-any.whl#sha256=4e7dd7cad3fca35158004af8ee06e0ec911f098fb7fbace75e7ae3c35e91a917 (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,304 Skipping link: No binaries permitted for sequana: 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2022-03-18T14:54:18,307 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.12-py3-none-any.whl#sha256=3f04e8007283308a1ca403222a81dfa0b39e862fc4b273b877ac7c0515aa1bed (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,307 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.13-py3-none-any.whl#sha256=d79163ff3005e50c03bd3d241bd28c77fc27b149ca3cafcaac73dd11f3da756a (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,308 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.14-py3-none-any.whl#sha256=ced50d95b3a00f2f8103c06a1cb6bb4097d8d4a08c461bf26525f6afe8ff75e0 (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,308 Skipping link: No binaries permitted for sequana: 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2022-03-18T14:54:18,312 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.19-py3-none-any.whl#sha256=072add6f657fd5ba0c484c282d0eae596f1b81bbbe5d73d01ee428afd896b26e (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,312 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.2-py3-none-any.whl#sha256=489f87ea4af5d8111aaf0b2603e4dbc8d44a47ad6a14eb44b2157490ccc4513c (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,313 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.20-py3-none-any.whl#sha256=443bc96ad7fb6fd2e4f68246cd5e0d14513ec95d0b41dcad255eff04d5ec5448 (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,314 Skipping link: No binaries permitted for sequana: 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https://www.piwheels.org/simple/sequana/sequana-0.1.9-py3-none-any.whl#sha256=d388a5c84fd9f1adb5094860b47e54b8ec1fc5dd60da99b5b7a4bd92471e1e5b (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,323 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.2.0-py3-none-any.whl#sha256=3f93bab506968797bfa09bd546a7890f00035664062d87d06c5cc0cae18ae47d (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,324 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.2.1-py3-none-any.whl#sha256=6c243101661c5b7e001970929b3f0854775ff25ec464016bac56bed727d1af42 (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,324 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.3.0-py3-none-any.whl#sha256=784c45559b3813a77c854c88c7f87f069fc80854dab49c4ce554d9e8d955bfee (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,325 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.4.0-py3-none-any.whl#sha256=3080e21d1193e999b07f07f7227c3e70af6a9655e9c706bbfb1d6be64be0e71f (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,326 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.4.1-py3-none-any.whl#sha256=4b67e3ac6f5e54aa37b0da900d08a73ec9f5517735d2ae91fb038acab735a773 (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,326 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.4.2-py3-none-any.whl#sha256=7972b2552d679935fa79ea6fb51b0465efc24cb36547875633f9ac334aebcb8d (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,327 Skipping link: No binaries permitted for sequana: 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2022-03-18T14:54:18,329 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.6.1-py3-none-any.whl#sha256=d9f7ee133817ee93576077f9a05fc6b0ff338b37c5951b7640811ee905aecec9 (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,330 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.6.2-py3-none-any.whl#sha256=9daac3efca51d0416a4eb439ec2841fe9e0f79ab1771903e47570b683d3af55c (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,330 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.6.3-py3-none-any.whl#sha256=d2663bf47cd7f401ceacc471e1929e187db6b88f8a9b7c9c51ea1d0483d2bb73 (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,331 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.6.3.post1-py3-none-any.whl#sha256=cd9278fe9ca6af6d3e096fc33b888ebccafb88c29ec2b958d2cfafaaf02ef13d (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,332 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.6.4-py3-none-any.whl#sha256=beb134933ee6020cec0c9632f7dc90bd320833a1a0be19cc1be8f2c1702dc6d3 (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,332 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.6.5.post1-py3-none-any.whl#sha256=c302b0d7a505ee314cb76562309a1bbc9990befe710507a6ce902b888d1b9f55 (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,333 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.6.5.post2-py3-none-any.whl#sha256=b8efd5c1500578ea35c2ad4b23bc95e43ad9eb6c6a7584ceca08256be9c24b4c (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,334 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.6.5.post3-py3-none-any.whl#sha256=d52dea7fc456b2cb55600597e477b6d2d63e0c035f5aeb4c1abb7ebde596c3b1 (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,334 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.7.0-py3-none-any.whl#sha256=c2169c7a41eee212666306fe6c7222c65cc5aabccda895d7f146d5d7f32c8731 (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,335 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.7.1-py3-none-any.whl#sha256=833843fa58f0071d5fb7e389f223dfbaedb59bab50fe03e393c48d8f7e58e753 (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,335 Skipping link: No binaries permitted for sequana: 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2022-03-18T14:54:18,338 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.8.4-py3-none-any.whl#sha256=cdc6737edc9032885602632826e4913a082f1c66dabd70ebdfeb5695c5318c58 (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,339 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.8.5-py3-none-any.whl#sha256=a6bf97c0284d77636b51fcd78ed7e22e0a195820fb6552be1a2540daaa433d75 (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,339 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.8.6-py3-none-any.whl#sha256=0c91883675a8c454bd0725ae216bc2378d41ec952cef8ad6979ddc3b3b26e820 (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,340 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.0-py3-none-any.whl#sha256=dce821b312c886051cfa4bf729f17a5df801fa195ac861642bdf07e6c653f9de (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,340 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.1-py3-none-any.whl#sha256=f2c12f5f57a1dac2672b6c19565b8f75c1815dcb3cb71fe457ef808b59b70f3f (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,341 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.2-py3-none-any.whl#sha256=31f71924b1cabcd3e3e8d8304160de58be7803aeda7d35ec1bf449084f420c3e (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,342 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.3-py3-none-any.whl#sha256=0374fc2b8f2f54ea8e3a5091403798b1bae59166b89fd7cf6eb846f7a3d944b3 (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,342 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.4-py3-none-any.whl#sha256=178e6af188bbfa96b5e54a4f0d33b5c5ba607e74cbc67cf85a8aa588e629502c (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,343 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.5-py3-none-any.whl#sha256=a7b054c071f59f03ce6d4e5659c452cb60656f0398728417544674bcf915672f (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,344 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.6-py3-none-any.whl#sha256=a57d1bef0edc28a2c836768c6a4c23146b7702accb38718db86bd7b6fa9d8470 (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,344 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.7-py3-none-any.whl#sha256=ab56e134c46744a1c0b6286cdf17cf65f13ea1c6db1f036c8be5be34f3b754fc (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,345 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.8-py3-none-any.whl#sha256=103274642cdeb6dab96a62b7f0df7cd961d70e3e856823bd6d5ef85b37b0477b (from https://www.piwheels.org/simple/sequana/) 2022-03-18T14:54:18,408 Given no hashes to check 1 links for project 'sequana': discarding no candidates 2022-03-18T14:54:18,441 Collecting sequana==0.13.2 2022-03-18T14:54:18,444 Created temporary directory: /tmp/pip-unpack-p4ms7flh 2022-03-18T14:54:19,237 Downloading sequana-0.13.2.tar.gz (3.2 MB) 2022-03-18T14:54:23,603 Added sequana==0.13.2 from https://files.pythonhosted.org/packages/9f/48/3b9effb1920f07143a86c1e6e5d7c1a7bc2ff51c32ebf5823bb4e4512ce6/sequana-0.13.2.tar.gz#sha256=4b643ac539a464e4dffc6c258a33ba5df7085e936073ed9d942e785d5f4e856c to build tracker '/tmp/pip-req-tracker-zgomjhcz' 2022-03-18T14:54:23,605 Running setup.py (path:/tmp/pip-wheel-shzzw4d9/sequana_4397ee015163439bbfe30b8b8858865d/setup.py) egg_info for package sequana 2022-03-18T14:54:23,607 Created temporary directory: /tmp/pip-pip-egg-info-tpx1jva_ 2022-03-18T14:54:23,608 Running command python setup.py egg_info 2022-03-18T14:54:26,660 running egg_info 2022-03-18T14:54:26,667 creating /tmp/pip-pip-egg-info-tpx1jva_/sequana.egg-info 2022-03-18T14:54:26,671 writing /tmp/pip-pip-egg-info-tpx1jva_/sequana.egg-info/PKG-INFO 2022-03-18T14:54:26,679 writing top-level names to /tmp/pip-pip-egg-info-tpx1jva_/sequana.egg-info/top_level.txt 2022-03-18T14:54:26,685 writing requirements to /tmp/pip-pip-egg-info-tpx1jva_/sequana.egg-info/requires.txt 2022-03-18T14:54:26,690 writing entry points to /tmp/pip-pip-egg-info-tpx1jva_/sequana.egg-info/entry_points.txt 2022-03-18T14:54:26,693 writing dependency_links to /tmp/pip-pip-egg-info-tpx1jva_/sequana.egg-info/dependency_links.txt 2022-03-18T14:54:26,697 writing manifest file '/tmp/pip-pip-egg-info-tpx1jva_/sequana.egg-info/SOURCES.txt' 2022-03-18T14:54:28,047 reading manifest file '/tmp/pip-pip-egg-info-tpx1jva_/sequana.egg-info/SOURCES.txt' 2022-03-18T14:54:28,051 reading manifest template 'MANIFEST.in' 2022-03-18T14:54:28,059 warning: no previously-included files matching '__pycache__' found under directory '*' 2022-03-18T14:54:28,063 warning: no previously-included files matching '*pyc' found under directory '*' 2022-03-18T14:54:28,724 warning: no files found matching 'test/requirements*txt' 2022-03-18T14:54:28,728 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2022-03-18T14:54:28,731 warning: no previously-included files matching '*' found under directory 'test' 2022-03-18T14:54:28,735 warning: no previously-included files matching '*' found under directory 'doc' 2022-03-18T14:54:28,738 warning: no previously-included files found matching 'sequana/rm2.py' 2022-03-18T14:54:28,788 writing manifest file '/tmp/pip-pip-egg-info-tpx1jva_/sequana.egg-info/SOURCES.txt' 2022-03-18T14:54:28,938 Source in /tmp/pip-wheel-shzzw4d9/sequana_4397ee015163439bbfe30b8b8858865d has version 0.13.2, which satisfies requirement sequana==0.13.2 from https://files.pythonhosted.org/packages/9f/48/3b9effb1920f07143a86c1e6e5d7c1a7bc2ff51c32ebf5823bb4e4512ce6/sequana-0.13.2.tar.gz#sha256=4b643ac539a464e4dffc6c258a33ba5df7085e936073ed9d942e785d5f4e856c 2022-03-18T14:54:28,940 Removed sequana==0.13.2 from https://files.pythonhosted.org/packages/9f/48/3b9effb1920f07143a86c1e6e5d7c1a7bc2ff51c32ebf5823bb4e4512ce6/sequana-0.13.2.tar.gz#sha256=4b643ac539a464e4dffc6c258a33ba5df7085e936073ed9d942e785d5f4e856c from build tracker '/tmp/pip-req-tracker-zgomjhcz' 2022-03-18T14:54:28,951 Created temporary directory: /tmp/pip-unpack-ou9mco92 2022-03-18T14:54:28,952 Building wheels for collected packages: sequana 2022-03-18T14:54:28,961 Created temporary directory: /tmp/pip-wheel-va67nsss 2022-03-18T14:54:28,963 Building wheel for sequana (setup.py): started 2022-03-18T14:54:28,963 Destination directory: /tmp/pip-wheel-va67nsss 2022-03-18T14:54:28,964 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-shzzw4d9/sequana_4397ee015163439bbfe30b8b8858865d/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-shzzw4d9/sequana_4397ee015163439bbfe30b8b8858865d/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-va67nsss 2022-03-18T14:54:31,895 running bdist_wheel 2022-03-18T14:54:31,912 running build 2022-03-18T14:54:31,913 running build_py 2022-03-18T14:54:32,257 creating build 2022-03-18T14:54:32,258 creating build/lib 2022-03-18T14:54:32,260 creating build/lib/sequana 2022-03-18T14:54:32,262 copying sequana/coverage.py -> build/lib/sequana 2022-03-18T14:54:32,268 copying sequana/genbank.py -> build/lib/sequana 2022-03-18T14:54:32,272 copying sequana/mixture.py -> build/lib/sequana 2022-03-18T14:54:32,280 copying sequana/fastqc.py -> build/lib/sequana 2022-03-18T14:54:32,286 copying sequana/criteria.py -> build/lib/sequana 2022-03-18T14:54:32,292 copying sequana/misc.py -> build/lib/sequana 2022-03-18T14:54:32,298 copying sequana/vcf_filter.py -> build/lib/sequana 2022-03-18T14:54:32,306 copying sequana/salmon.py -> build/lib/sequana 2022-03-18T14:54:32,313 copying sequana/bedtools.py -> build/lib/sequana 2022-03-18T14:54:32,324 copying sequana/cigar.py -> build/lib/sequana 2022-03-18T14:54:32,329 copying sequana/macs3.py -> build/lib/sequana 2022-03-18T14:54:32,334 copying sequana/jsontool.py -> build/lib/sequana 2022-03-18T14:54:32,340 copying sequana/summary.py -> build/lib/sequana 2022-03-18T14:54:32,347 copying sequana/datatools.py -> build/lib/sequana 2022-03-18T14:54:32,352 copying sequana/bamtools.py -> build/lib/sequana 2022-03-18T14:54:32,363 copying sequana/fasta.py -> build/lib/sequana 2022-03-18T14:54:32,368 copying sequana/mh.py -> build/lib/sequana 2022-03-18T14:54:32,373 copying sequana/chipseq.py -> build/lib/sequana 2022-03-18T14:54:32,382 copying sequana/kmer.py -> build/lib/sequana 2022-03-18T14:54:32,387 copying sequana/iuapc.py -> build/lib/sequana 2022-03-18T14:54:32,393 copying sequana/mgi.py -> build/lib/sequana 2022-03-18T14:54:32,399 copying sequana/freebayes_vcf_filter.py -> build/lib/sequana 2022-03-18T14:54:32,406 copying sequana/errors.py -> build/lib/sequana 2022-03-18T14:54:32,411 copying sequana/__init__.py -> build/lib/sequana 2022-03-18T14:54:32,416 copying sequana/featurecounts.py -> build/lib/sequana 2022-03-18T14:54:32,422 copying sequana/lazyimports.py -> build/lib/sequana 2022-03-18T14:54:32,427 copying sequana/tools.py -> build/lib/sequana 2022-03-18T14:54:32,433 copying sequana/sniffer.py -> build/lib/sequana 2022-03-18T14:54:32,439 copying sequana/isoseq.py -> build/lib/sequana 2022-03-18T14:54:32,446 copying sequana/kegg.py -> build/lib/sequana 2022-03-18T14:54:32,453 copying sequana/vst.py -> build/lib/sequana 2022-03-18T14:54:32,459 copying sequana/trf.py -> build/lib/sequana 2022-03-18T14:54:32,465 copying sequana/find_motif.py -> build/lib/sequana 2022-03-18T14:54:32,472 copying sequana/fastq.py -> build/lib/sequana 2022-03-18T14:54:32,481 copying sequana/contigs.py -> build/lib/sequana 2022-03-18T14:54:32,488 copying sequana/demultiplex.py -> build/lib/sequana 2022-03-18T14:54:32,495 copying sequana/gtf.py -> build/lib/sequana 2022-03-18T14:54:32,500 copying sequana/bed.py -> build/lib/sequana 2022-03-18T14:54:32,507 copying sequana/cpg_islands.py -> build/lib/sequana 2022-03-18T14:54:32,512 copying sequana/pacbio_amplicon.py -> build/lib/sequana 2022-03-18T14:54:32,518 copying sequana/protein.py -> build/lib/sequana 2022-03-18T14:54:32,521 copying sequana/assembly.py -> build/lib/sequana 2022-03-18T14:54:32,526 copying sequana/pacbio.py -> build/lib/sequana 2022-03-18T14:54:32,535 copying sequana/stats.py -> build/lib/sequana 2022-03-18T14:54:32,540 copying sequana/snpeff.py -> build/lib/sequana 2022-03-18T14:54:32,547 copying sequana/compare.py -> build/lib/sequana 2022-03-18T14:54:32,554 copying sequana/databases.py -> build/lib/sequana 2022-03-18T14:54:32,561 copying sequana/rnadiff.py -> build/lib/sequana 2022-03-18T14:54:32,570 copying sequana/krona.py -> build/lib/sequana 2022-03-18T14:54:32,574 copying sequana/phred.py -> build/lib/sequana 2022-03-18T14:54:32,580 copying sequana/sequence.py -> build/lib/sequana 2022-03-18T14:54:32,590 copying sequana/vcftools.py -> build/lib/sequana 2022-03-18T14:54:32,596 copying sequana/running_median.py -> build/lib/sequana 2022-03-18T14:54:32,601 copying sequana/lazy.py -> build/lib/sequana 2022-03-18T14:54:32,605 copying sequana/ribodesigner.py -> build/lib/sequana 2022-03-18T14:54:32,609 copying sequana/iem.py -> build/lib/sequana 2022-03-18T14:54:32,614 copying sequana/itol.py -> build/lib/sequana 2022-03-18T14:54:32,620 copying sequana/freebayes_bcf_filter.py -> build/lib/sequana 2022-03-18T14:54:32,627 copying sequana/taxonomy.py -> build/lib/sequana 2022-03-18T14:54:32,634 copying sequana/gff3.py -> build/lib/sequana 2022-03-18T14:54:32,641 copying sequana/cnv.py -> build/lib/sequana 2022-03-18T14:54:32,645 copying sequana/canu_scanner.py -> build/lib/sequana 2022-03-18T14:54:32,652 creating build/lib/sequana/scripts 2022-03-18T14:54:32,654 copying sequana/scripts/coverage.py -> build/lib/sequana/scripts 2022-03-18T14:54:32,662 copying sequana/scripts/start_pipeline.py -> build/lib/sequana/scripts 2022-03-18T14:54:32,668 copying sequana/scripts/__init__.py -> build/lib/sequana/scripts 2022-03-18T14:54:32,672 copying sequana/scripts/substractor.py -> build/lib/sequana/scripts 2022-03-18T14:54:32,679 copying sequana/scripts/mapping.py -> build/lib/sequana/scripts 2022-03-18T14:54:32,684 copying sequana/scripts/taxonomy.py -> build/lib/sequana/scripts 2022-03-18T14:54:32,690 creating build/lib/sequana/kraken 2022-03-18T14:54:32,692 copying sequana/kraken/analysis.py -> build/lib/sequana/kraken 2022-03-18T14:54:32,703 copying sequana/kraken/__init__.py -> build/lib/sequana/kraken 2022-03-18T14:54:32,707 copying sequana/kraken/multikraken.py -> build/lib/sequana/kraken 2022-03-18T14:54:32,717 creating build/lib/sequana/multiqc 2022-03-18T14:54:32,719 copying sequana/multiqc/coverage.py -> build/lib/sequana/multiqc 2022-03-18T14:54:32,725 copying sequana/multiqc/laa.py -> build/lib/sequana/multiqc 2022-03-18T14:54:32,729 copying sequana/multiqc/pacbio_qc.py -> build/lib/sequana/multiqc 2022-03-18T14:54:32,734 copying sequana/multiqc/__init__.py -> build/lib/sequana/multiqc 2022-03-18T14:54:32,738 copying sequana/multiqc/isoseq.py -> build/lib/sequana/multiqc 2022-03-18T14:54:32,745 copying sequana/multiqc/pacbio_amplicon.py -> build/lib/sequana/multiqc 2022-03-18T14:54:32,751 copying sequana/multiqc/kraken.py -> build/lib/sequana/multiqc 2022-03-18T14:54:32,757 copying sequana/multiqc/config.py -> build/lib/sequana/multiqc 2022-03-18T14:54:32,761 copying sequana/multiqc/isoseq_qc.py -> build/lib/sequana/multiqc 2022-03-18T14:54:32,766 copying sequana/multiqc/bamtools_stats.py -> build/lib/sequana/multiqc 2022-03-18T14:54:32,771 copying sequana/multiqc/quality_control.py -> build/lib/sequana/multiqc 2022-03-18T14:54:32,776 copying sequana/multiqc/plots.py -> build/lib/sequana/multiqc 2022-03-18T14:54:32,786 creating build/lib/sequana/viz 2022-03-18T14:54:32,788 copying sequana/viz/mds.py -> build/lib/sequana/viz 2022-03-18T14:54:32,795 copying sequana/viz/scatter.py -> build/lib/sequana/viz 2022-03-18T14:54:32,801 copying sequana/viz/core.py -> build/lib/sequana/viz 2022-03-18T14:54:32,805 copying sequana/viz/hinton.py -> build/lib/sequana/viz 2022-03-18T14:54:32,809 copying sequana/viz/__init__.py -> build/lib/sequana/viz 2022-03-18T14:54:32,813 copying sequana/viz/clusterisation.py -> build/lib/sequana/viz 2022-03-18T14:54:32,818 copying sequana/viz/volcano.py -> build/lib/sequana/viz 2022-03-18T14:54:32,824 copying sequana/viz/imshow.py -> build/lib/sequana/viz 2022-03-18T14:54:32,830 copying sequana/viz/boxplot.py -> build/lib/sequana/viz 2022-03-18T14:54:32,836 copying sequana/viz/heatmap.py -> build/lib/sequana/viz 2022-03-18T14:54:32,843 copying sequana/viz/corrplot.py -> build/lib/sequana/viz 2022-03-18T14:54:32,850 copying sequana/viz/isomap.py -> build/lib/sequana/viz 2022-03-18T14:54:32,854 copying sequana/viz/anova.py -> build/lib/sequana/viz 2022-03-18T14:54:32,858 copying sequana/viz/hist2d.py -> build/lib/sequana/viz 2022-03-18T14:54:32,864 copying sequana/viz/pca.py -> build/lib/sequana/viz 2022-03-18T14:54:32,871 copying sequana/viz/linkage.py -> build/lib/sequana/viz 2022-03-18T14:54:32,876 copying sequana/viz/venn.py -> build/lib/sequana/viz 2022-03-18T14:54:32,883 copying sequana/viz/dendogram.py -> build/lib/sequana/viz 2022-03-18T14:54:32,888 creating build/lib/sequana/resources 2022-03-18T14:54:32,890 copying sequana/resources/__init__.py -> build/lib/sequana/resources 2022-03-18T14:54:32,895 creating build/lib/sequana/plots 2022-03-18T14:54:32,896 copying sequana/plots/__init__.py -> build/lib/sequana/plots 2022-03-18T14:54:32,900 copying sequana/plots/canvasjs_base.py -> build/lib/sequana/plots 2022-03-18T14:54:32,906 copying sequana/plots/canvasjs_linegraph.py -> build/lib/sequana/plots 2022-03-18T14:54:32,915 creating build/lib/sequana/enrichment 2022-03-18T14:54:32,917 copying sequana/enrichment/panther.py -> build/lib/sequana/enrichment 2022-03-18T14:54:32,925 copying sequana/enrichment/gsea.py -> build/lib/sequana/enrichment 2022-03-18T14:54:32,929 copying sequana/enrichment/__init__.py -> build/lib/sequana/enrichment 2022-03-18T14:54:32,933 copying sequana/enrichment/kegg.py -> build/lib/sequana/enrichment 2022-03-18T14:54:32,939 copying sequana/enrichment/mart.py -> build/lib/sequana/enrichment 2022-03-18T14:54:32,947 creating build/lib/sequana/rules 2022-03-18T14:54:32,949 copying sequana/rules/__init__.py -> build/lib/sequana/rules 2022-03-18T14:54:32,960 creating build/lib/sequana/modules_report 2022-03-18T14:54:32,962 copying sequana/modules_report/coverage.py -> build/lib/sequana/modules_report 2022-03-18T14:54:32,970 copying sequana/modules_report/fastq_stats.py -> build/lib/sequana/modules_report 2022-03-18T14:54:32,974 copying sequana/modules_report/fastqc.py -> build/lib/sequana/modules_report 2022-03-18T14:54:32,978 copying sequana/modules_report/cutadapt.py -> build/lib/sequana/modules_report 2022-03-18T14:54:32,985 copying sequana/modules_report/quast.py -> build/lib/sequana/modules_report 2022-03-18T14:54:32,990 copying sequana/modules_report/base_module.py -> build/lib/sequana/modules_report 2022-03-18T14:54:32,996 copying sequana/modules_report/summary.py -> build/lib/sequana/modules_report 2022-03-18T14:54:33,003 copying sequana/modules_report/bwa_bam_to_fastq.py -> build/lib/sequana/modules_report 2022-03-18T14:54:33,009 copying sequana/modules_report/kegg_enrichment.py -> build/lib/sequana/modules_report 2022-03-18T14:54:33,015 copying sequana/modules_report/__init__.py -> build/lib/sequana/modules_report 2022-03-18T14:54:33,020 copying sequana/modules_report/multi_summary.py -> build/lib/sequana/modules_report 2022-03-18T14:54:33,027 copying sequana/modules_report/trf.py -> build/lib/sequana/modules_report 2022-03-18T14:54:33,033 copying sequana/modules_report/phix.py -> build/lib/sequana/modules_report 2022-03-18T14:54:33,039 copying sequana/modules_report/pacbio_input_bam.py -> build/lib/sequana/modules_report 2022-03-18T14:54:33,045 copying sequana/modules_report/kraken.py -> build/lib/sequana/modules_report 2022-03-18T14:54:33,050 copying sequana/modules_report/rnadiff.py -> build/lib/sequana/modules_report 2022-03-18T14:54:33,056 copying sequana/modules_report/variant_calling.py -> build/lib/sequana/modules_report 2022-03-18T14:54:33,061 copying sequana/modules_report/joint_calling.py -> build/lib/sequana/modules_report 2022-03-18T14:54:33,064 copying sequana/modules_report/bamqc.py -> build/lib/sequana/modules_report 2022-03-18T14:54:33,069 copying sequana/modules_report/panther_enrichment.py -> build/lib/sequana/modules_report 2022-03-18T14:54:33,079 creating build/lib/sequana/utils 2022-03-18T14:54:33,081 copying sequana/utils/datatables_js.py -> build/lib/sequana/utils 2022-03-18T14:54:33,089 copying sequana/utils/__init__.py -> build/lib/sequana/utils 2022-03-18T14:54:33,092 copying sequana/utils/config.py -> build/lib/sequana/utils 2022-03-18T14:54:33,096 copying sequana/utils/tree.py -> build/lib/sequana/utils 2022-03-18T14:54:33,101 copying sequana/utils/singleton.py -> build/lib/sequana/utils 2022-03-18T14:54:33,105 copying sequana/utils/df2html.py -> build/lib/sequana/utils 2022-03-18T14:54:33,116 creating build/lib/sequana/scripts/main 2022-03-18T14:54:33,119 copying sequana/scripts/main/lane_merging.py -> build/lib/sequana/scripts/main 2022-03-18T14:54:33,126 copying sequana/scripts/main/enrichment_panther.py -> build/lib/sequana/scripts/main 2022-03-18T14:54:33,132 copying sequana/scripts/main/biomart.py -> build/lib/sequana/scripts/main 2022-03-18T14:54:33,136 copying sequana/scripts/main/main.py -> build/lib/sequana/scripts/main 2022-03-18T14:54:33,140 copying sequana/scripts/main/utils.py -> build/lib/sequana/scripts/main 2022-03-18T14:54:33,145 copying sequana/scripts/main/rnaseq_compare.py -> build/lib/sequana/scripts/main 2022-03-18T14:54:33,149 copying sequana/scripts/main/salmon.py -> build/lib/sequana/scripts/main 2022-03-18T14:54:33,155 copying sequana/scripts/main/summary.py -> build/lib/sequana/scripts/main 2022-03-18T14:54:33,160 copying sequana/scripts/main/fasta.py -> build/lib/sequana/scripts/main 2022-03-18T14:54:33,166 copying sequana/scripts/main/gff_to_gtf.py -> build/lib/sequana/scripts/main 2022-03-18T14:54:33,172 copying sequana/scripts/main/enrichment_kegg.py -> build/lib/sequana/scripts/main 2022-03-18T14:54:33,176 copying sequana/scripts/main/__init__.py -> build/lib/sequana/scripts/main 2022-03-18T14:54:33,179 copying sequana/scripts/main/fastq.py -> build/lib/sequana/scripts/main 2022-03-18T14:54:33,184 copying sequana/scripts/main/gff_to_light_gff.py -> build/lib/sequana/scripts/main 2022-03-18T14:54:33,188 copying sequana/scripts/main/samplesheet.py -> build/lib/sequana/scripts/main 2022-03-18T14:54:33,192 copying sequana/scripts/main/gtf_fixer.py -> build/lib/sequana/scripts/main 2022-03-18T14:54:33,198 copying sequana/scripts/main/rnadiff.py -> build/lib/sequana/scripts/main 2022-03-18T14:54:33,205 copying sequana/scripts/main/mapping.py -> build/lib/sequana/scripts/main 2022-03-18T14:54:33,211 copying sequana/scripts/main/ribodesigner.py -> build/lib/sequana/scripts/main 2022-03-18T14:54:33,215 copying sequana/scripts/main/taxonomy.py -> build/lib/sequana/scripts/main 2022-03-18T14:54:33,220 copying sequana/scripts/main/feature_count.py -> build/lib/sequana/scripts/main 2022-03-18T14:54:33,224 creating build/lib/sequana/resources/js 2022-03-18T14:54:33,226 copying sequana/resources/js/__init__.py -> build/lib/sequana/resources/js 2022-03-18T14:54:33,231 creating build/lib/sequana/resources/testing 2022-03-18T14:54:33,233 copying sequana/resources/testing/__init__.py -> build/lib/sequana/resources/testing 2022-03-18T14:54:33,237 creating build/lib/sequana/resources/images 2022-03-18T14:54:33,239 copying sequana/resources/images/__init__.py -> build/lib/sequana/resources/images 2022-03-18T14:54:33,243 creating build/lib/sequana/resources/doc 2022-03-18T14:54:33,245 copying sequana/resources/doc/__init__.py -> build/lib/sequana/resources/doc 2022-03-18T14:54:33,249 creating build/lib/sequana/resources/css 2022-03-18T14:54:33,251 copying sequana/resources/css/__init__.py -> build/lib/sequana/resources/css 2022-03-18T14:54:33,256 creating build/lib/sequana/resources/snpeff 2022-03-18T14:54:33,257 copying sequana/resources/snpeff/__init__.py -> build/lib/sequana/resources/snpeff 2022-03-18T14:54:33,262 creating build/lib/sequana/resources/examples 2022-03-18T14:54:33,264 copying sequana/resources/examples/__init__.py -> build/lib/sequana/resources/examples 2022-03-18T14:54:33,268 creating build/lib/sequana/resources/canvas 2022-03-18T14:54:33,270 copying sequana/resources/canvas/__init__.py -> build/lib/sequana/resources/canvas 2022-03-18T14:54:33,274 copying sequana/resources/canvas/bar.py -> build/lib/sequana/resources/canvas 2022-03-18T14:54:33,282 creating build/lib/sequana/resources/templates 2022-03-18T14:54:33,284 copying sequana/resources/templates/__init__.py -> build/lib/sequana/resources/templates 2022-03-18T14:54:33,291 creating build/lib/sequana/resources/data 2022-03-18T14:54:33,293 copying sequana/resources/data/__init__.py -> build/lib/sequana/resources/data 2022-03-18T14:54:33,298 creating build/lib/sequana/resources/testing/featurecounts 2022-03-18T14:54:33,300 copying sequana/resources/testing/featurecounts/__init__.py -> build/lib/sequana/resources/testing/featurecounts 2022-03-18T14:54:33,305 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0 2022-03-18T14:54:33,307 copying sequana/resources/testing/featurecounts/rnaseq_0/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0 2022-03-18T14:54:33,311 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1 2022-03-18T14:54:33,313 copying sequana/resources/testing/featurecounts/rnaseq_0/sample1/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1 2022-03-18T14:54:33,320 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0 2022-03-18T14:54:33,323 copying sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0 2022-03-18T14:54:33,329 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1 2022-03-18T14:54:33,332 copying sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1 2022-03-18T14:54:33,338 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2 2022-03-18T14:54:33,340 copying sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2 2022-03-18T14:54:33,345 creating build/lib/sequana/resources/doc/rnadiff_compare 2022-03-18T14:54:33,348 copying sequana/resources/doc/rnadiff_compare/__init__.py -> build/lib/sequana/resources/doc/rnadiff_compare 2022-03-18T14:54:33,354 creating build/lib/sequana/rules/picard-tools 2022-03-18T14:54:33,357 copying sequana/rules/picard-tools/__init__.py -> build/lib/sequana/rules/picard-tools 2022-03-18T14:54:33,362 creating build/lib/sequana/rules/Variant_caller 2022-03-18T14:54:33,365 copying sequana/rules/Variant_caller/__init__.py -> build/lib/sequana/rules/Variant_caller 2022-03-18T14:54:33,370 creating build/lib/sequana/rules/SnpEff 2022-03-18T14:54:33,373 copying sequana/rules/SnpEff/__init__.py -> build/lib/sequana/rules/SnpEff 2022-03-18T14:54:33,379 creating build/lib/sequana/rules/idr 2022-03-18T14:54:33,381 copying sequana/rules/idr/__init__.py -> build/lib/sequana/rules/idr 2022-03-18T14:54:33,387 creating build/lib/sequana/rules/codecs 2022-03-18T14:54:33,390 copying sequana/rules/codecs/__init__.py -> build/lib/sequana/rules/codecs 2022-03-18T14:54:33,395 creating build/lib/sequana/rules/Pacbio 2022-03-18T14:54:33,398 copying sequana/rules/Pacbio/__init__.py -> build/lib/sequana/rules/Pacbio 2022-03-18T14:54:33,404 creating build/lib/sequana/rules/deeptools 2022-03-18T14:54:33,407 copying sequana/rules/deeptools/__init__.py -> build/lib/sequana/rules/deeptools 2022-03-18T14:54:33,412 creating build/lib/sequana/rules/Utils 2022-03-18T14:54:33,415 copying sequana/rules/Utils/__init__.py -> build/lib/sequana/rules/Utils 2022-03-18T14:54:33,421 creating build/lib/sequana/rules/sambamba 2022-03-18T14:54:33,423 copying sequana/rules/sambamba/__init__.py -> build/lib/sequana/rules/sambamba 2022-03-18T14:54:34,233 copying sequana/multiqc/multiqc_config.yaml -> build/lib/sequana/multiqc 2022-03-18T14:54:34,240 copying sequana/rules/README.rst -> build/lib/sequana/rules 2022-03-18T14:54:34,246 creating build/lib/sequana/rules/fastq_sampling 2022-03-18T14:54:34,248 copying sequana/rules/fastq_sampling/fastq_sampling.rules -> build/lib/sequana/rules/fastq_sampling 2022-03-18T14:54:34,254 creating build/lib/sequana/rules/copy_multiple_files 2022-03-18T14:54:34,257 copying sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/lib/sequana/rules/copy_multiple_files 2022-03-18T14:54:34,263 creating build/lib/sequana/rules/summary_pipeline 2022-03-18T14:54:34,266 copying sequana/rules/summary_pipeline/summary_pipeline.rules -> build/lib/sequana/rules/summary_pipeline 2022-03-18T14:54:34,272 creating build/lib/sequana/rules/joint_freebayes 2022-03-18T14:54:34,275 copying sequana/rules/joint_freebayes/joint_freebayes.rules -> build/lib/sequana/rules/joint_freebayes 2022-03-18T14:54:34,281 creating build/lib/sequana/rules/sequana_coverage 2022-03-18T14:54:34,284 copying sequana/rules/sequana_coverage/sequana_coverage.rules -> build/lib/sequana/rules/sequana_coverage 2022-03-18T14:54:34,291 creating build/lib/sequana/rules/feature_counts 2022-03-18T14:54:34,294 copying sequana/rules/feature_counts/feature_counts.rules -> build/lib/sequana/rules/feature_counts 2022-03-18T14:54:34,300 creating build/lib/sequana/rules/tophat_mapping 2022-03-18T14:54:34,303 copying sequana/rules/tophat_mapping/tophat_mapping.rules -> build/lib/sequana/rules/tophat_mapping 2022-03-18T14:54:34,309 creating build/lib/sequana/rules/bamCoverage 2022-03-18T14:54:34,311 copying sequana/rules/bamCoverage/bamCoverage.rules -> build/lib/sequana/rules/bamCoverage 2022-03-18T14:54:34,318 creating build/lib/sequana/rules/remove_blacklist 2022-03-18T14:54:34,319 copying sequana/rules/remove_blacklist/remove_blacklist.rules -> build/lib/sequana/rules/remove_blacklist 2022-03-18T14:54:34,326 creating build/lib/sequana/rules/SARTools 2022-03-18T14:54:34,328 copying sequana/rules/SARTools/SARTools.rules -> build/lib/sequana/rules/SARTools 2022-03-18T14:54:34,336 creating build/lib/sequana/rules/canu 2022-03-18T14:54:34,339 copying sequana/rules/canu/canu.rules -> build/lib/sequana/rules/canu 2022-03-18T14:54:34,346 creating build/lib/sequana/rules/igvtools 2022-03-18T14:54:34,348 copying sequana/rules/igvtools/igvtools.rules -> build/lib/sequana/rules/igvtools 2022-03-18T14:54:34,355 creating build/lib/sequana/rules/preSARTools 2022-03-18T14:54:34,357 copying sequana/rules/preSARTools/preSARTools.rules -> build/lib/sequana/rules/preSARTools 2022-03-18T14:54:34,364 creating build/lib/sequana/rules/mapping_analysis 2022-03-18T14:54:34,367 copying sequana/rules/mapping_analysis/mapping_analysis.rules -> build/lib/sequana/rules/mapping_analysis 2022-03-18T14:54:34,374 creating build/lib/sequana/rules/fastq_screen_report 2022-03-18T14:54:34,376 copying sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/lib/sequana/rules/fastq_screen_report 2022-03-18T14:54:34,384 creating build/lib/sequana/rules/extract_fasta_from_bed 2022-03-18T14:54:34,387 copying sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/lib/sequana/rules/extract_fasta_from_bed 2022-03-18T14:54:34,393 creating build/lib/sequana/rules/fastp 2022-03-18T14:54:34,396 copying sequana/rules/fastp/fastp.rules -> build/lib/sequana/rules/fastp 2022-03-18T14:54:34,403 creating build/lib/sequana/rules/spades_get_fastq 2022-03-18T14:54:34,404 copying sequana/rules/spades_get_fastq/spades_get_fastq.rules -> build/lib/sequana/rules/spades_get_fastq 2022-03-18T14:54:34,410 creating build/lib/sequana/rules/joint_freebayes_vcf_filter 2022-03-18T14:54:34,412 copying sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/lib/sequana/rules/joint_freebayes_vcf_filter 2022-03-18T14:54:34,417 creating build/lib/sequana/rules/falco 2022-03-18T14:54:34,418 copying sequana/rules/falco/falco.rules -> build/lib/sequana/rules/falco 2022-03-18T14:54:34,424 creating build/lib/sequana/rules/salmon_mapping 2022-03-18T14:54:34,426 copying sequana/rules/salmon_mapping/salmon_mapping.rules -> build/lib/sequana/rules/salmon_mapping 2022-03-18T14:54:34,433 creating build/lib/sequana/rules/bam_quality_filter 2022-03-18T14:54:34,436 copying sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/lib/sequana/rules/bam_quality_filter 2022-03-18T14:54:34,443 creating build/lib/sequana/rules/bowtie2_index 2022-03-18T14:54:34,445 copying sequana/rules/bowtie2_index/bowtie2_index.rules -> build/lib/sequana/rules/bowtie2_index 2022-03-18T14:54:34,450 creating build/lib/sequana/rules/multiqc 2022-03-18T14:54:34,452 copying sequana/rules/multiqc/multiqc.rules -> build/lib/sequana/rules/multiqc 2022-03-18T14:54:34,457 creating build/lib/sequana/rules/quast 2022-03-18T14:54:34,459 copying sequana/rules/quast/quast.rules -> build/lib/sequana/rules/quast 2022-03-18T14:54:34,465 creating build/lib/sequana/rules/miRNA_count_dynamic 2022-03-18T14:54:34,468 copying sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/lib/sequana/rules/miRNA_count_dynamic 2022-03-18T14:54:34,474 creating build/lib/sequana/rules/indel_realigner 2022-03-18T14:54:34,477 copying sequana/rules/indel_realigner/indel_realigner.rules -> build/lib/sequana/rules/indel_realigner 2022-03-18T14:54:34,484 creating build/lib/sequana/rules/spades 2022-03-18T14:54:34,486 copying sequana/rules/spades/spades.rules -> build/lib/sequana/rules/spades 2022-03-18T14:54:34,493 creating build/lib/sequana/rules/freebayes_bcf_filter 2022-03-18T14:54:34,496 copying sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/lib/sequana/rules/freebayes_bcf_filter 2022-03-18T14:54:34,503 creating build/lib/sequana/rules/freebayes_vcf_filter 2022-03-18T14:54:34,505 copying sequana/rules/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/lib/sequana/rules/freebayes_vcf_filter 2022-03-18T14:54:34,512 creating build/lib/sequana/rules/bwa_index 2022-03-18T14:54:34,515 copying sequana/rules/bwa_index/bwa_index.rules -> build/lib/sequana/rules/bwa_index 2022-03-18T14:54:34,521 creating build/lib/sequana/rules/salmon_index 2022-03-18T14:54:34,524 copying sequana/rules/salmon_index/salmon_index.rules -> build/lib/sequana/rules/salmon_index 2022-03-18T14:54:34,529 creating build/lib/sequana/rules/revcomp_rule 2022-03-18T14:54:34,531 copying sequana/rules/revcomp_rule/revcomp_rule.rules -> build/lib/sequana/rules/revcomp_rule 2022-03-18T14:54:34,536 creating build/lib/sequana/rules/fastqc 2022-03-18T14:54:34,538 copying sequana/rules/fastqc/fastqc.rules -> build/lib/sequana/rules/fastqc 2022-03-18T14:54:34,543 creating build/lib/sequana/rules/spp 2022-03-18T14:54:34,544 copying sequana/rules/spp/spp.rules -> build/lib/sequana/rules/spp 2022-03-18T14:54:34,551 creating build/lib/sequana/rules/macs3_dynamic 2022-03-18T14:54:34,554 copying sequana/rules/macs3_dynamic/macs3_dynamic.rules -> build/lib/sequana/rules/macs3_dynamic 2022-03-18T14:54:34,561 creating build/lib/sequana/rules/rulegraph 2022-03-18T14:54:34,563 copying sequana/rules/rulegraph/rulegraph.rules -> build/lib/sequana/rules/rulegraph 2022-03-18T14:54:34,570 creating build/lib/sequana/rules/pacbio_quality 2022-03-18T14:54:34,572 copying sequana/rules/pacbio_quality/pacbio_quality.rules -> build/lib/sequana/rules/pacbio_quality 2022-03-18T14:54:34,579 creating build/lib/sequana/rules/multiqc2 2022-03-18T14:54:34,581 copying sequana/rules/multiqc2/multiqc2.rules -> build/lib/sequana/rules/multiqc2 2022-03-18T14:54:34,589 creating build/lib/sequana/rules/samtools_depth 2022-03-18T14:54:34,591 copying sequana/rules/samtools_depth/samtools_depth.rules -> build/lib/sequana/rules/samtools_depth 2022-03-18T14:54:34,598 creating build/lib/sequana/rules/star_index 2022-03-18T14:54:34,600 copying sequana/rules/star_index/star_index.rules -> build/lib/sequana/rules/star_index 2022-03-18T14:54:34,607 creating build/lib/sequana/rules/DupRadar 2022-03-18T14:54:34,609 copying sequana/rules/DupRadar/DupRadar.rules -> build/lib/sequana/rules/DupRadar 2022-03-18T14:54:34,616 creating build/lib/sequana/rules/prokka 2022-03-18T14:54:34,618 copying sequana/rules/prokka/prokka.rules -> build/lib/sequana/rules/prokka 2022-03-18T14:54:34,625 creating build/lib/sequana/rules/spikes_counting 2022-03-18T14:54:34,627 copying sequana/rules/spikes_counting/spikes_counting.rules -> build/lib/sequana/rules/spikes_counting 2022-03-18T14:54:34,632 creating build/lib/sequana/rules/dag 2022-03-18T14:54:34,634 copying sequana/rules/dag/dag.rules -> build/lib/sequana/rules/dag 2022-03-18T14:54:34,639 creating build/lib/sequana/rules/rnaseqc 2022-03-18T14:54:34,641 copying sequana/rules/rnaseqc/rnaseqc.rules -> build/lib/sequana/rules/rnaseqc 2022-03-18T14:54:34,646 creating build/lib/sequana/rules/format_contigs 2022-03-18T14:54:34,648 copying sequana/rules/format_contigs/format_contigs.rules -> build/lib/sequana/rules/format_contigs 2022-03-18T14:54:34,655 creating build/lib/sequana/rules/samtools_sort 2022-03-18T14:54:34,657 copying sequana/rules/samtools_sort/samtools_sort.rules -> build/lib/sequana/rules/samtools_sort 2022-03-18T14:54:34,664 creating build/lib/sequana/rules/bwa_bam_to_fastq 2022-03-18T14:54:34,667 copying sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/lib/sequana/rules/bwa_bam_to_fastq 2022-03-18T14:54:34,672 creating build/lib/sequana/rules/freebayes 2022-03-18T14:54:34,673 copying sequana/rules/freebayes/freebayes.rules -> build/lib/sequana/rules/freebayes 2022-03-18T14:54:34,678 creating build/lib/sequana/rules/star_mapping 2022-03-18T14:54:34,680 copying sequana/rules/star_mapping/star_mapping.rules -> build/lib/sequana/rules/star_mapping 2022-03-18T14:54:34,686 creating build/lib/sequana/rules/cutadapt 2022-03-18T14:54:34,688 copying sequana/rules/cutadapt/cutadapt.rules -> build/lib/sequana/rules/cutadapt 2022-03-18T14:54:34,695 creating build/lib/sequana/rules/fastq_screen 2022-03-18T14:54:34,698 copying sequana/rules/fastq_screen/fastq_screen.rules -> build/lib/sequana/rules/fastq_screen 2022-03-18T14:54:34,705 creating build/lib/sequana/rules/bed_to_gff 2022-03-18T14:54:34,707 copying sequana/rules/bed_to_gff/bed_to_gff.rules -> build/lib/sequana/rules/bed_to_gff 2022-03-18T14:54:34,714 creating build/lib/sequana/rules/picard-tools/mark_duplicates 2022-03-18T14:54:34,716 copying sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules -> build/lib/sequana/rules/picard-tools/mark_duplicates 2022-03-18T14:54:34,723 creating build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2022-03-18T14:54:34,726 copying sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2022-03-18T14:54:34,733 creating build/lib/sequana/rules/picard-tools/reorderSam 2022-03-18T14:54:34,735 copying sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/lib/sequana/rules/picard-tools/reorderSam 2022-03-18T14:54:34,742 creating build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2022-03-18T14:54:34,745 copying sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2022-03-18T14:54:34,752 creating build/lib/sequana/rules/picard-tools/add_read_group 2022-03-18T14:54:34,754 copying sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/lib/sequana/rules/picard-tools/add_read_group 2022-03-18T14:54:34,761 creating build/lib/sequana/rules/peak_calling 2022-03-18T14:54:34,763 creating build/lib/sequana/rules/peak_calling/macs2_dynamic 2022-03-18T14:54:34,766 copying sequana/rules/peak_calling/macs2_dynamic/macs2_dynamic.rules -> build/lib/sequana/rules/peak_calling/macs2_dynamic 2022-03-18T14:54:34,772 creating build/lib/sequana/rules/SnpEff/snpeff_create_database 2022-03-18T14:54:34,774 copying sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/lib/sequana/rules/SnpEff/snpeff_create_database 2022-03-18T14:54:34,779 creating build/lib/sequana/rules/kraken 2022-03-18T14:54:34,780 creating build/lib/sequana/rules/kraken/2.0 2022-03-18T14:54:34,782 copying sequana/rules/kraken/2.0/kraken.rules -> build/lib/sequana/rules/kraken/2.0 2022-03-18T14:54:34,787 creating build/lib/sequana/rules/kraken/1.0 2022-03-18T14:54:34,789 copying sequana/rules/kraken/1.0/kraken.rules -> build/lib/sequana/rules/kraken/1.0 2022-03-18T14:54:34,796 creating build/lib/sequana/rules/kraken/1.1 2022-03-18T14:54:34,798 copying sequana/rules/kraken/1.1/kraken.rules -> build/lib/sequana/rules/kraken/1.1 2022-03-18T14:54:34,806 creating build/lib/sequana/rules/idr/metrics_peaks 2022-03-18T14:54:34,809 copying sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/lib/sequana/rules/idr/metrics_peaks 2022-03-18T14:54:34,815 creating build/lib/sequana/rules/idr/preIDR_dynamic 2022-03-18T14:54:34,816 copying sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/lib/sequana/rules/idr/preIDR_dynamic 2022-03-18T14:54:34,823 creating build/lib/sequana/rules/idr/intersectionApproach 2022-03-18T14:54:34,824 copying sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/lib/sequana/rules/idr/intersectionApproach 2022-03-18T14:54:34,829 creating build/lib/sequana/rules/idr/select_peaks 2022-03-18T14:54:34,832 copying sequana/rules/idr/select_peaks/select_peaks.rules -> build/lib/sequana/rules/idr/select_peaks 2022-03-18T14:54:34,839 creating build/lib/sequana/rules/idr/stats_peakCalling 2022-03-18T14:54:34,841 copying sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/lib/sequana/rules/idr/stats_peakCalling 2022-03-18T14:54:34,848 creating build/lib/sequana/rules/idr/union_peaks 2022-03-18T14:54:34,850 copying sequana/rules/idr/union_peaks/union_peaks.rules -> build/lib/sequana/rules/idr/union_peaks 2022-03-18T14:54:34,856 creating build/lib/sequana/rules/idr/compute_idr 2022-03-18T14:54:34,858 copying sequana/rules/idr/compute_idr/compute_idr.rules -> build/lib/sequana/rules/idr/compute_idr 2022-03-18T14:54:34,863 creating build/lib/sequana/rules/codecs/vcf_to_bcf 2022-03-18T14:54:34,865 copying sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules -> build/lib/sequana/rules/codecs/vcf_to_bcf 2022-03-18T14:54:34,869 creating build/lib/sequana/rules/codecs/bz2_to_fastq 2022-03-18T14:54:34,871 copying sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/lib/sequana/rules/codecs/bz2_to_fastq 2022-03-18T14:54:34,878 creating build/lib/sequana/rules/codecs/gz_to_fastq 2022-03-18T14:54:34,881 copying sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/lib/sequana/rules/codecs/gz_to_fastq 2022-03-18T14:54:34,887 creating build/lib/sequana/rules/codecs/bz2_to_dsrc 2022-03-18T14:54:34,890 copying sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/lib/sequana/rules/codecs/bz2_to_dsrc 2022-03-18T14:54:34,895 creating build/lib/sequana/rules/codecs/bz2_to_gz 2022-03-18T14:54:34,897 copying sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/lib/sequana/rules/codecs/bz2_to_gz 2022-03-18T14:54:34,902 creating build/lib/sequana/rules/codecs/dsrc_to_bz2 2022-03-18T14:54:34,904 copying sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/lib/sequana/rules/codecs/dsrc_to_bz2 2022-03-18T14:54:34,909 creating build/lib/sequana/rules/codecs/fastq_to_bz2 2022-03-18T14:54:34,911 copying sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/lib/sequana/rules/codecs/fastq_to_bz2 2022-03-18T14:54:34,918 creating build/lib/sequana/rules/codecs/dsrc_to_gz 2022-03-18T14:54:34,920 copying sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/lib/sequana/rules/codecs/dsrc_to_gz 2022-03-18T14:54:34,927 creating build/lib/sequana/rules/codecs/dsrc_to_fastq 2022-03-18T14:54:34,930 copying sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/lib/sequana/rules/codecs/dsrc_to_fastq 2022-03-18T14:54:34,936 creating build/lib/sequana/rules/codecs/fastq_to_dsrc 2022-03-18T14:54:34,938 copying sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/lib/sequana/rules/codecs/fastq_to_dsrc 2022-03-18T14:54:34,943 creating build/lib/sequana/rules/codecs/gz_to_dsrc 2022-03-18T14:54:34,945 copying sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/lib/sequana/rules/codecs/gz_to_dsrc 2022-03-18T14:54:34,950 creating build/lib/sequana/rules/codecs/fastq_to_gz 2022-03-18T14:54:34,952 copying sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/lib/sequana/rules/codecs/fastq_to_gz 2022-03-18T14:54:34,959 creating build/lib/sequana/rules/codecs/gz_to_bz2 2022-03-18T14:54:34,961 copying sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/lib/sequana/rules/codecs/gz_to_bz2 2022-03-18T14:54:34,968 creating build/lib/sequana/rules/multiqc/2.0 2022-03-18T14:54:34,971 copying sequana/rules/multiqc/2.0/multiqc.rules -> build/lib/sequana/rules/multiqc/2.0 2022-03-18T14:54:34,977 creating build/lib/sequana/rules/deeptools/plotCorrelation 2022-03-18T14:54:34,979 copying sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/lib/sequana/rules/deeptools/plotCorrelation 2022-03-18T14:54:34,984 creating build/lib/sequana/rules/deeptools/BamPEFragmentSize 2022-03-18T14:54:34,986 copying sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/lib/sequana/rules/deeptools/BamPEFragmentSize 2022-03-18T14:54:34,991 creating build/lib/sequana/rules/deeptools/multiBamSummary 2022-03-18T14:54:34,993 copying sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/lib/sequana/rules/deeptools/multiBamSummary 2022-03-18T14:54:34,1000 creating build/lib/sequana/rules/deeptools/plotCoverage 2022-03-18T14:54:35,003 copying sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/lib/sequana/rules/deeptools/plotCoverage 2022-03-18T14:54:35,010 creating build/lib/sequana/rules/sambamba/sambamba_markdup 2022-03-18T14:54:35,012 copying sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/lib/sequana/rules/sambamba/sambamba_markdup 2022-03-18T14:54:35,018 creating build/lib/sequana/rules/sambamba/sambamba_filter 2022-03-18T14:54:35,020 copying sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/lib/sequana/rules/sambamba/sambamba_filter 2022-03-18T14:54:35,026 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2022-03-18T14:54:35,027 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2022-03-18T14:54:35,029 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2022-03-18T14:54:35,034 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2022-03-18T14:54:35,037 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2022-03-18T14:54:35,044 creating build/lib/sequana/rules/SnpEff/snpeff 2022-03-18T14:54:35,046 creating build/lib/sequana/rules/SnpEff/snpeff/1.0 2022-03-18T14:54:35,049 copying sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.0 2022-03-18T14:54:35,056 creating build/lib/sequana/rules/SnpEff/snpeff/1.1 2022-03-18T14:54:35,058 copying sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.1 2022-03-18T14:54:35,064 copying sequana/resources/js/buttons.print.min.js -> build/lib/sequana/resources/js 2022-03-18T14:54:35,069 copying sequana/resources/js/jquery-3.2.1.min.js -> build/lib/sequana/resources/js 2022-03-18T14:54:35,084 copying sequana/resources/js/jquery.dataTables.min.js -> build/lib/sequana/resources/js 2022-03-18T14:54:35,100 copying sequana/resources/js/canvasjs.min.js -> build/lib/sequana/resources/js 2022-03-18T14:54:35,129 copying sequana/resources/js/dataTables.buttons.min.js -> build/lib/sequana/resources/js 2022-03-18T14:54:35,138 copying sequana/resources/js/jquery.dropdown.min.js -> build/lib/sequana/resources/js 2022-03-18T14:54:35,146 copying sequana/resources/js/jquery-3.1.1.min.js -> build/lib/sequana/resources/js 2022-03-18T14:54:35,162 copying sequana/resources/js/papaparse.min.js -> build/lib/sequana/resources/js 2022-03-18T14:54:35,170 copying sequana/resources/js/buttons.html5.min.js -> build/lib/sequana/resources/js 2022-03-18T14:54:35,178 copying sequana/resources/js/bootstrap.min.js -> build/lib/sequana/resources/js 2022-03-18T14:54:35,188 copying sequana/resources/js/jquery.tocPlugin.js -> build/lib/sequana/resources/js 2022-03-18T14:54:35,194 copying sequana/resources/js/jquery-2.1.1.js -> build/lib/sequana/resources/js 2022-03-18T14:54:35,223 copying sequana/resources/js/jquery-3.5.1.min.js -> build/lib/sequana/resources/js 2022-03-18T14:54:35,237 copying sequana/resources/testing/README.rst -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,242 copying sequana/resources/testing/adapters_with_duplicates.fa -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,248 copying sequana/resources/testing/measles.fa -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,255 copying sequana/resources/testing/summary_coverage1.json -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,261 copying sequana/resources/testing/test_blast_local.xml -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,268 copying sequana/resources/testing/test_iem_samplesheet_hiseq_single.csv -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,273 copying sequana/resources/testing/test_trf1.dat -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,287 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,293 copying sequana/resources/testing/summary_qc.json -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,298 copying sequana/resources/testing/test_contigs_spades.fasta -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,306 copying sequana/resources/testing/test_kraken.out.summary -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,311 copying sequana/resources/testing/test_laa_amplicon_analysis_summary_bc25.csv -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,317 copying sequana/resources/testing/measles.fa.fai -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,323 copying sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,328 copying sequana/resources/testing/summary_coverage2.json -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,334 copying sequana/resources/testing/test_pca.csv -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,353 copying sequana/resources/testing/test_sirv.xls -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,384 copying sequana/resources/testing/test_JB409847.bed -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,429 copying sequana/resources/testing/summary_pacbio_qc2.json -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,438 copying sequana/resources/testing/test_summary_fastq_stats.json -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,445 copying sequana/resources/testing/test_expdesign_generic.csv -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,451 copying sequana/resources/testing/test_CS_tiny.bam -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,460 copying sequana/resources/testing/test_iem_samplesheet_nextseq_single.csv -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,466 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,471 copying sequana/resources/testing/test_expdesign_wrong.csv -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,477 copying sequana/resources/testing/test_measles.cram -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,484 copying sequana/resources/testing/test_busco_full_table.tsv -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,491 copying sequana/resources/testing/test_demultiplex_Stats.json -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,502 copying sequana/resources/testing/test_coverage.csv -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,540 copying sequana/resources/testing/summary_kraken.json -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,546 copying sequana/resources/testing/test.bam -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,559 copying sequana/resources/testing/test.vcf -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,568 copying sequana/resources/testing/test_pacbio_subreads.bam.bai -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,574 copying sequana/resources/testing/test_pacbio_subreads.bam -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,615 copying sequana/resources/testing/test_mgi.fqStat.txt -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,628 copying sequana/resources/testing/test_dag.ann.dot -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,633 copying sequana/resources/testing/test_cnvnator.txt -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,638 copying sequana/resources/testing/test.fasta -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,645 copying sequana/resources/testing/test_expdesign_hiseq.csv -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,651 copying sequana/resources/testing/test_iem_samplesheet_iseq100.csv -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,657 copying sequana/resources/testing/test_pacbio_barcode_report.csv -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,664 copying sequana/resources/testing/test_demultiplex_Stats_undetermined.json -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,670 copying sequana/resources/testing/test_iem_samplesheet_misnieq.csv -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,675 copying sequana/resources/testing/test_taxon_rtd.csv -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,680 copying sequana/resources/testing/test_summary_module.svg -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,686 copying sequana/resources/testing/test_krona_k1.tsv -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,693 copying sequana/resources/testing/summary_pacbio_qc3.json -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,700 copying sequana/resources/testing/test_atropos_paired.txt -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,710 copying sequana/resources/testing/test_atropos_pe.json -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,730 copying sequana/resources/testing/test_atropos_se.txt -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,739 copying sequana/resources/testing/test_fastqc_report.zip -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,752 copying sequana/resources/testing/test_itol_basic.tree.txt -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,757 copying sequana/resources/testing/summary_pacbio_qc1.json -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,763 copying sequana/resources/testing/test_snpeff_ref.gb -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,829 copying sequana/resources/testing/test_expdesign_rubicon.csv -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,835 copying sequana/resources/testing/test_isoseq_lq_sirv.bam -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,858 copying sequana/resources/testing/test_measles.sam -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,865 copying sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,869 copying sequana/resources/testing/summary_bamtools_stats.txt -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,875 copying sequana/resources/testing/test_contigs_ex1.fasta -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,887 copying sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,894 copying sequana/resources/testing/test_vcf_mpileup_4dot1.vcf -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,907 copying sequana/resources/testing/test_expdesign_Hm2.csv -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,912 copying sequana/resources/testing/test_gtf_fixer.gtf -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,919 copying sequana/resources/testing/test_expdesign_miseq_illumina2.csv -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,927 copying sequana/resources/testing/test_expdesign_miseq_illumina_1.csv -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,934 copying sequana/resources/testing/test_iem_samplesheet_miseq_double.csv -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,939 copying sequana/resources/testing/test_laa_amplicon_analysis_summary_bc24.csv -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,943 copying sequana/resources/testing/test_blast_ebi.xml -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,984 copying sequana/resources/testing/test_krona_k2.tsv -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,990 copying sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/lib/sequana/resources/testing 2022-03-18T14:54:35,997 copying sequana/resources/testing/test_atropos_se.json -> build/lib/sequana/resources/testing 2022-03-18T14:54:36,012 copying sequana/resources/testing/test_index_mapper.csv -> build/lib/sequana/resources/testing 2022-03-18T14:54:36,017 copying sequana/resources/testing/test_cutadapt_paired.txt -> build/lib/sequana/resources/testing 2022-03-18T14:54:36,025 copying sequana/resources/testing/test.bam.bai -> build/lib/sequana/resources/testing 2022-03-18T14:54:36,029 copying sequana/resources/testing/test.sam -> build/lib/sequana/resources/testing 2022-03-18T14:54:36,047 copying sequana/resources/testing/test_measles.bam -> build/lib/sequana/resources/testing 2022-03-18T14:54:36,055 copying sequana/resources/testing/test_atropos_pe.txt -> build/lib/sequana/resources/testing 2022-03-18T14:54:36,069 copying sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0 2022-03-18T14:54:36,077 copying sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1 2022-03-18T14:54:36,083 copying sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2 2022-03-18T14:54:36,087 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2 2022-03-18T14:54:36,088 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0 2022-03-18T14:54:36,091 copying sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0 2022-03-18T14:54:36,095 copying sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0 2022-03-18T14:54:36,102 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1 2022-03-18T14:54:36,104 copying sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1 2022-03-18T14:54:36,111 copying sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1 2022-03-18T14:54:36,117 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2 2022-03-18T14:54:36,119 copying sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2 2022-03-18T14:54:36,123 copying sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2 2022-03-18T14:54:36,128 copying sequana/resources/images/Institut_Pasteur.png -> build/lib/sequana/resources/images 2022-03-18T14:54:36,138 copying sequana/resources/images/no_data.jpg -> build/lib/sequana/resources/images 2022-03-18T14:54:36,146 copying sequana/resources/images/no_data.png -> build/lib/sequana/resources/images 2022-03-18T14:54:36,154 copying sequana/resources/css/bootstrap.min.css -> build/lib/sequana/resources/css 2022-03-18T14:54:36,172 copying sequana/resources/css/jquery.dataTables.min.css -> build/lib/sequana/resources/css 2022-03-18T14:54:36,179 copying sequana/resources/css/report.css -> build/lib/sequana/resources/css 2022-03-18T14:54:36,186 copying sequana/resources/css/buttons.dataTables.min.css -> build/lib/sequana/resources/css 2022-03-18T14:54:36,194 copying sequana/resources/css/jquery.dropdown.min.css -> build/lib/sequana/resources/css 2022-03-18T14:54:36,201 copying sequana/resources/snpeff/snpEff.config -> build/lib/sequana/resources/snpeff 2022-03-18T14:54:36,210 copying sequana/resources/examples/README.rst -> build/lib/sequana/resources/examples 2022-03-18T14:54:36,216 copying sequana/resources/examples/test.fastq.gz -> build/lib/sequana/resources/examples 2022-03-18T14:54:36,224 copying sequana/resources/examples/test_kraken.out -> build/lib/sequana/resources/examples 2022-03-18T14:54:36,231 copying sequana/resources/templates/standard.html -> build/lib/sequana/resources/templates 2022-03-18T14:54:36,236 copying sequana/resources/templates/joint_calling.html -> build/lib/sequana/resources/templates 2022-03-18T14:54:36,241 copying sequana/resources/templates/base.html -> build/lib/sequana/resources/templates 2022-03-18T14:54:36,248 copying sequana/resources/templates/rnadiff_light_template.R -> build/lib/sequana/resources/templates 2022-03-18T14:54:36,256 copying sequana/resources/data/README.rst -> build/lib/sequana/resources/data 2022-03-18T14:54:36,262 copying sequana/resources/data/measles.fa -> build/lib/sequana/resources/data 2022-03-18T14:54:36,269 copying sequana/resources/data/SIRV.fa -> build/lib/sequana/resources/data 2022-03-18T14:54:36,281 copying sequana/resources/data/phiX174.fa -> build/lib/sequana/resources/data 2022-03-18T14:54:36,289 copying sequana/resources/data/JB409847.cov.csv -> build/lib/sequana/resources/data 2022-03-18T14:54:36,377 copying sequana/resources/data/virus.bed -> build/lib/sequana/resources/data 2022-03-18T14:54:36,413 copying sequana/resources/data/test_wrong_bed.bed -> build/lib/sequana/resources/data 2022-03-18T14:54:36,417 copying sequana/resources/data/JB409847.bed -> build/lib/sequana/resources/data 2022-03-18T14:54:36,458 copying sequana/resources/data/test_hg38_chr18.bam -> build/lib/sequana/resources/data 2022-03-18T14:54:36,471 copying sequana/resources/data/measles.fa.sorted.bam -> build/lib/sequana/resources/data 2022-03-18T14:54:36,500 copying sequana/resources/data/hg38_chr18.bed -> build/lib/sequana/resources/data 2022-03-18T14:54:36,556 copying sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/lib/sequana/resources/data 2022-03-18T14:54:36,575 copying sequana/resources/data/JB409847.vc.csv -> build/lib/sequana/resources/data 2022-03-18T14:54:36,583 copying sequana/resources/data/JB409847.csv -> build/lib/sequana/resources/data 2022-03-18T14:54:36,590 copying sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/lib/sequana/resources/data 2022-03-18T14:54:36,609 copying sequana/resources/data/panther.csv -> build/lib/sequana/resources/data 2022-03-18T14:54:36,617 copying sequana/resources/data/JB409847.fasta -> build/lib/sequana/resources/data 2022-03-18T14:54:36,627 copying sequana/resources/data/JB409847.gbk -> build/lib/sequana/resources/data 2022-03-18T14:54:36,638 copying sequana/resources/data/measles.fa.sorted.bam.bai -> build/lib/sequana/resources/data 2022-03-18T14:54:36,644 copying sequana/resources/data/kegg.csv -> build/lib/sequana/resources/data 2022-03-18T14:54:36,759 installing to build/bdist.linux-armv7l/wheel 2022-03-18T14:54:36,760 running install 2022-03-18T14:54:36,762 running install_lib 2022-03-18T14:54:36,770 creating build/bdist.linux-armv7l 2022-03-18T14:54:36,771 creating build/bdist.linux-armv7l/wheel 2022-03-18T14:54:36,777 creating build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:36,779 copying build/lib/sequana/coverage.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:36,785 copying build/lib/sequana/genbank.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:36,790 copying build/lib/sequana/mixture.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:36,799 creating build/bdist.linux-armv7l/wheel/sequana/scripts 2022-03-18T14:54:36,801 copying build/lib/sequana/scripts/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2022-03-18T14:54:36,810 copying build/lib/sequana/scripts/start_pipeline.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2022-03-18T14:54:36,815 copying build/lib/sequana/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2022-03-18T14:54:36,820 copying build/lib/sequana/scripts/substractor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2022-03-18T14:54:36,829 creating build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-03-18T14:54:36,831 copying build/lib/sequana/scripts/main/lane_merging.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-03-18T14:54:36,839 copying build/lib/sequana/scripts/main/enrichment_panther.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-03-18T14:54:36,845 copying build/lib/sequana/scripts/main/biomart.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-03-18T14:54:36,851 copying build/lib/sequana/scripts/main/main.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-03-18T14:54:36,857 copying build/lib/sequana/scripts/main/utils.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-03-18T14:54:36,862 copying build/lib/sequana/scripts/main/rnaseq_compare.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-03-18T14:54:36,868 copying build/lib/sequana/scripts/main/salmon.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-03-18T14:54:36,873 copying build/lib/sequana/scripts/main/summary.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-03-18T14:54:36,879 copying build/lib/sequana/scripts/main/fasta.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-03-18T14:54:36,884 copying build/lib/sequana/scripts/main/gff_to_gtf.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-03-18T14:54:36,890 copying build/lib/sequana/scripts/main/enrichment_kegg.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-03-18T14:54:36,896 copying build/lib/sequana/scripts/main/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-03-18T14:54:36,901 copying build/lib/sequana/scripts/main/fastq.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-03-18T14:54:36,906 copying build/lib/sequana/scripts/main/gff_to_light_gff.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-03-18T14:54:36,912 copying build/lib/sequana/scripts/main/samplesheet.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-03-18T14:54:36,917 copying build/lib/sequana/scripts/main/gtf_fixer.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-03-18T14:54:36,923 copying build/lib/sequana/scripts/main/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-03-18T14:54:36,930 copying build/lib/sequana/scripts/main/mapping.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-03-18T14:54:36,935 copying build/lib/sequana/scripts/main/ribodesigner.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-03-18T14:54:36,940 copying build/lib/sequana/scripts/main/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-03-18T14:54:36,944 copying build/lib/sequana/scripts/main/feature_count.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-03-18T14:54:36,948 copying build/lib/sequana/scripts/mapping.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2022-03-18T14:54:36,953 copying build/lib/sequana/scripts/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2022-03-18T14:54:36,958 copying build/lib/sequana/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:36,965 copying build/lib/sequana/criteria.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:36,971 copying build/lib/sequana/misc.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:36,976 copying build/lib/sequana/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:36,984 copying build/lib/sequana/salmon.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:36,990 copying build/lib/sequana/bedtools.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,004 copying build/lib/sequana/cigar.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,010 copying build/lib/sequana/macs3.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,017 copying build/lib/sequana/jsontool.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,023 copying build/lib/sequana/summary.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,029 copying build/lib/sequana/datatools.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,034 copying build/lib/sequana/bamtools.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,046 copying build/lib/sequana/fasta.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,053 copying build/lib/sequana/mh.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,060 copying build/lib/sequana/chipseq.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,068 copying build/lib/sequana/kmer.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,074 copying build/lib/sequana/iuapc.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,080 copying build/lib/sequana/mgi.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,085 copying build/lib/sequana/freebayes_vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,092 copying build/lib/sequana/errors.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,097 copying build/lib/sequana/__init__.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,102 copying build/lib/sequana/featurecounts.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,108 copying build/lib/sequana/lazyimports.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,113 copying build/lib/sequana/tools.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,119 copying build/lib/sequana/sniffer.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,124 copying build/lib/sequana/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,132 copying build/lib/sequana/kegg.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,138 copying build/lib/sequana/vst.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,143 copying build/lib/sequana/trf.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,151 creating build/bdist.linux-armv7l/wheel/sequana/kraken 2022-03-18T14:54:37,154 copying build/lib/sequana/kraken/analysis.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2022-03-18T14:54:37,164 copying build/lib/sequana/kraken/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2022-03-18T14:54:37,167 copying build/lib/sequana/kraken/multikraken.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2022-03-18T14:54:37,173 copying build/lib/sequana/find_motif.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,178 copying build/lib/sequana/fastq.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,189 creating build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-03-18T14:54:37,191 copying build/lib/sequana/multiqc/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-03-18T14:54:37,199 copying build/lib/sequana/multiqc/laa.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-03-18T14:54:37,204 copying build/lib/sequana/multiqc/pacbio_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-03-18T14:54:37,211 copying build/lib/sequana/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-03-18T14:54:37,217 copying build/lib/sequana/multiqc/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-03-18T14:54:37,224 copying build/lib/sequana/multiqc/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-03-18T14:54:37,230 copying build/lib/sequana/multiqc/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-03-18T14:54:37,237 copying build/lib/sequana/multiqc/config.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-03-18T14:54:37,242 copying build/lib/sequana/multiqc/isoseq_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-03-18T14:54:37,248 copying build/lib/sequana/multiqc/bamtools_stats.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-03-18T14:54:37,255 copying build/lib/sequana/multiqc/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-03-18T14:54:37,262 copying build/lib/sequana/multiqc/quality_control.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-03-18T14:54:37,268 copying build/lib/sequana/multiqc/plots.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-03-18T14:54:37,274 copying build/lib/sequana/contigs.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,281 copying build/lib/sequana/demultiplex.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,288 copying build/lib/sequana/gtf.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,293 copying build/lib/sequana/bed.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,300 copying build/lib/sequana/cpg_islands.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,305 copying build/lib/sequana/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,314 creating build/bdist.linux-armv7l/wheel/sequana/viz 2022-03-18T14:54:37,317 copying build/lib/sequana/viz/mds.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-03-18T14:54:37,323 copying build/lib/sequana/viz/scatter.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-03-18T14:54:37,330 copying build/lib/sequana/viz/core.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-03-18T14:54:37,335 copying build/lib/sequana/viz/hinton.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-03-18T14:54:37,341 copying build/lib/sequana/viz/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-03-18T14:54:37,346 copying build/lib/sequana/viz/clusterisation.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-03-18T14:54:37,353 copying build/lib/sequana/viz/volcano.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-03-18T14:54:37,359 copying build/lib/sequana/viz/imshow.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-03-18T14:54:37,365 copying build/lib/sequana/viz/boxplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-03-18T14:54:37,371 copying build/lib/sequana/viz/heatmap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-03-18T14:54:37,379 copying build/lib/sequana/viz/corrplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-03-18T14:54:37,389 copying build/lib/sequana/viz/isomap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-03-18T14:54:37,394 copying build/lib/sequana/viz/anova.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-03-18T14:54:37,400 copying build/lib/sequana/viz/hist2d.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-03-18T14:54:37,406 copying build/lib/sequana/viz/pca.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-03-18T14:54:37,412 copying build/lib/sequana/viz/linkage.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-03-18T14:54:37,418 copying build/lib/sequana/viz/venn.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-03-18T14:54:37,424 copying build/lib/sequana/viz/dendogram.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-03-18T14:54:37,430 copying build/lib/sequana/protein.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,436 copying build/lib/sequana/assembly.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,442 copying build/lib/sequana/pacbio.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,453 copying build/lib/sequana/stats.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,458 copying build/lib/sequana/snpeff.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,465 copying build/lib/sequana/compare.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,473 copying build/lib/sequana/databases.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,481 copying build/lib/sequana/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:37,494 creating build/bdist.linux-armv7l/wheel/sequana/resources 2022-03-18T14:54:37,498 creating build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-03-18T14:54:37,501 copying build/lib/sequana/resources/js/buttons.print.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-03-18T14:54:37,507 copying build/lib/sequana/resources/js/jquery-3.2.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-03-18T14:54:37,522 copying build/lib/sequana/resources/js/jquery.dataTables.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-03-18T14:54:37,535 copying build/lib/sequana/resources/js/canvasjs.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-03-18T14:54:37,564 copying build/lib/sequana/resources/js/dataTables.buttons.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-03-18T14:54:37,570 copying build/lib/sequana/resources/js/jquery.dropdown.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-03-18T14:54:37,574 copying build/lib/sequana/resources/js/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-03-18T14:54:37,578 copying build/lib/sequana/resources/js/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-03-18T14:54:37,591 copying build/lib/sequana/resources/js/papaparse.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-03-18T14:54:37,599 copying build/lib/sequana/resources/js/buttons.html5.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-03-18T14:54:37,607 copying build/lib/sequana/resources/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-03-18T14:54:37,617 copying build/lib/sequana/resources/js/jquery.tocPlugin.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-03-18T14:54:37,623 copying build/lib/sequana/resources/js/jquery-2.1.1.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-03-18T14:54:37,653 copying build/lib/sequana/resources/js/jquery-3.5.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-03-18T14:54:37,673 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,676 copying build/lib/sequana/resources/testing/summary_coverage1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,682 copying build/lib/sequana/resources/testing/test_blast_local.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,689 copying build/lib/sequana/resources/testing/test_iem_samplesheet_hiseq_single.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,694 copying build/lib/sequana/resources/testing/test_trf1.dat -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,709 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,715 copying build/lib/sequana/resources/testing/summary_qc.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,720 copying build/lib/sequana/resources/testing/test_contigs_spades.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,728 copying build/lib/sequana/resources/testing/test_kraken.out.summary -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,733 copying build/lib/sequana/resources/testing/adapters_with_duplicates.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,737 copying build/lib/sequana/resources/testing/test_laa_amplicon_analysis_summary_bc25.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,741 copying build/lib/sequana/resources/testing/measles.fa.fai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,745 copying build/lib/sequana/resources/testing/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,750 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,756 copying build/lib/sequana/resources/testing/summary_coverage2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,762 copying build/lib/sequana/resources/testing/test_pca.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,780 copying build/lib/sequana/resources/testing/test_sirv.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,811 copying build/lib/sequana/resources/testing/test_JB409847.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,851 copying build/lib/sequana/resources/testing/summary_pacbio_qc2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,858 copying build/lib/sequana/resources/testing/test_summary_fastq_stats.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,863 copying build/lib/sequana/resources/testing/test_expdesign_generic.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,869 copying build/lib/sequana/resources/testing/test_CS_tiny.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,878 copying build/lib/sequana/resources/testing/test_iem_samplesheet_nextseq_single.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,883 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,889 copying build/lib/sequana/resources/testing/test_expdesign_wrong.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,894 copying build/lib/sequana/resources/testing/test_measles.cram -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,901 copying build/lib/sequana/resources/testing/test_busco_full_table.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,909 copying build/lib/sequana/resources/testing/test_demultiplex_Stats.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,920 copying build/lib/sequana/resources/testing/test_coverage.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,959 copying build/lib/sequana/resources/testing/summary_kraken.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,966 copying build/lib/sequana/resources/testing/test.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,976 copying build/lib/sequana/resources/testing/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,981 copying build/lib/sequana/resources/testing/test.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,988 copying build/lib/sequana/resources/testing/test_pacbio_subreads.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:37,994 copying build/lib/sequana/resources/testing/test_pacbio_subreads.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,034 copying build/lib/sequana/resources/testing/test_mgi.fqStat.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,044 copying build/lib/sequana/resources/testing/test_dag.ann.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,050 copying build/lib/sequana/resources/testing/test_cnvnator.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,056 copying build/lib/sequana/resources/testing/test.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,064 copying build/lib/sequana/resources/testing/test_expdesign_hiseq.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,069 copying build/lib/sequana/resources/testing/test_iem_samplesheet_iseq100.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,075 copying build/lib/sequana/resources/testing/test_pacbio_barcode_report.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,080 copying build/lib/sequana/resources/testing/test_demultiplex_Stats_undetermined.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,084 copying build/lib/sequana/resources/testing/test_iem_samplesheet_misnieq.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,088 copying build/lib/sequana/resources/testing/test_taxon_rtd.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,093 copying build/lib/sequana/resources/testing/test_summary_module.svg -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,100 copying build/lib/sequana/resources/testing/test_krona_k1.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,106 copying build/lib/sequana/resources/testing/summary_pacbio_qc3.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,112 copying build/lib/sequana/resources/testing/test_atropos_paired.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,120 copying build/lib/sequana/resources/testing/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,126 copying build/lib/sequana/resources/testing/test_atropos_pe.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,146 copying build/lib/sequana/resources/testing/test_atropos_se.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,153 copying build/lib/sequana/resources/testing/test_fastqc_report.zip -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,167 copying build/lib/sequana/resources/testing/test_itol_basic.tree.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,172 copying build/lib/sequana/resources/testing/summary_pacbio_qc1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,179 copying build/lib/sequana/resources/testing/test_snpeff_ref.gb -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,249 copying build/lib/sequana/resources/testing/test_expdesign_rubicon.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,255 copying build/lib/sequana/resources/testing/test_isoseq_lq_sirv.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,279 copying build/lib/sequana/resources/testing/test_measles.sam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,286 copying build/lib/sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,291 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts 2022-03-18T14:54:38,293 copying build/lib/sequana/resources/testing/featurecounts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts 2022-03-18T14:54:38,298 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0 2022-03-18T14:54:38,300 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0 2022-03-18T14:54:38,307 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1 2022-03-18T14:54:38,310 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1 2022-03-18T14:54:38,317 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0 2022-03-18T14:54:38,319 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0 2022-03-18T14:54:38,323 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0 2022-03-18T14:54:38,328 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1 2022-03-18T14:54:38,330 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1 2022-03-18T14:54:38,334 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1 2022-03-18T14:54:38,340 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2 2022-03-18T14:54:38,342 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2 2022-03-18T14:54:38,348 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2 2022-03-18T14:54:38,355 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2 2022-03-18T14:54:38,359 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0 2022-03-18T14:54:38,362 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0 2022-03-18T14:54:38,365 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0 2022-03-18T14:54:38,371 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1 2022-03-18T14:54:38,373 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1 2022-03-18T14:54:38,377 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1 2022-03-18T14:54:38,382 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2 2022-03-18T14:54:38,385 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2 2022-03-18T14:54:38,390 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2 2022-03-18T14:54:38,396 copying build/lib/sequana/resources/testing/summary_bamtools_stats.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,402 copying build/lib/sequana/resources/testing/test_contigs_ex1.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,410 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,415 copying build/lib/sequana/resources/testing/test_vcf_mpileup_4dot1.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,430 copying build/lib/sequana/resources/testing/test_expdesign_Hm2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,435 copying build/lib/sequana/resources/testing/test_gtf_fixer.gtf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,441 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,448 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_1.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,453 copying build/lib/sequana/resources/testing/test_iem_samplesheet_miseq_double.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,459 copying build/lib/sequana/resources/testing/test_laa_amplicon_analysis_summary_bc24.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,465 copying build/lib/sequana/resources/testing/test_blast_ebi.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,505 copying build/lib/sequana/resources/testing/test_krona_k2.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,511 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,517 copying build/lib/sequana/resources/testing/test_atropos_se.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,530 copying build/lib/sequana/resources/testing/test_index_mapper.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,534 copying build/lib/sequana/resources/testing/test_cutadapt_paired.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,540 copying build/lib/sequana/resources/testing/test.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,546 copying build/lib/sequana/resources/testing/test.sam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,563 copying build/lib/sequana/resources/testing/test_measles.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,570 copying build/lib/sequana/resources/testing/test_atropos_pe.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-03-18T14:54:38,578 creating build/bdist.linux-armv7l/wheel/sequana/resources/images 2022-03-18T14:54:38,581 copying build/lib/sequana/resources/images/Institut_Pasteur.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2022-03-18T14:54:38,590 copying build/lib/sequana/resources/images/no_data.jpg -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2022-03-18T14:54:38,594 copying build/lib/sequana/resources/images/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2022-03-18T14:54:38,597 copying build/lib/sequana/resources/images/no_data.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2022-03-18T14:54:38,603 copying build/lib/sequana/resources/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources 2022-03-18T14:54:38,609 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc 2022-03-18T14:54:38,613 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2022-03-18T14:54:38,616 copying build/lib/sequana/resources/doc/rnadiff_compare/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2022-03-18T14:54:38,621 copying build/lib/sequana/resources/doc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc 2022-03-18T14:54:38,626 creating build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-03-18T14:54:38,628 copying build/lib/sequana/resources/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-03-18T14:54:38,644 copying build/lib/sequana/resources/css/jquery.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-03-18T14:54:38,652 copying build/lib/sequana/resources/css/report.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-03-18T14:54:38,658 copying build/lib/sequana/resources/css/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-03-18T14:54:38,663 copying build/lib/sequana/resources/css/buttons.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-03-18T14:54:38,670 copying build/lib/sequana/resources/css/jquery.dropdown.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-03-18T14:54:38,677 creating build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2022-03-18T14:54:38,679 copying build/lib/sequana/resources/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2022-03-18T14:54:38,684 copying build/lib/sequana/resources/snpeff/snpEff.config -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2022-03-18T14:54:38,694 creating build/bdist.linux-armv7l/wheel/sequana/resources/examples 2022-03-18T14:54:38,696 copying build/lib/sequana/resources/examples/test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2022-03-18T14:54:38,705 copying build/lib/sequana/resources/examples/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2022-03-18T14:54:38,710 copying build/lib/sequana/resources/examples/test_kraken.out -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2022-03-18T14:54:38,717 copying build/lib/sequana/resources/examples/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2022-03-18T14:54:38,723 creating build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2022-03-18T14:54:38,725 copying build/lib/sequana/resources/canvas/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2022-03-18T14:54:38,730 copying build/lib/sequana/resources/canvas/bar.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2022-03-18T14:54:38,738 creating build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-03-18T14:54:38,740 copying build/lib/sequana/resources/templates/standard.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-03-18T14:54:38,746 copying build/lib/sequana/resources/templates/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-03-18T14:54:38,751 copying build/lib/sequana/resources/templates/rnadiff_light_template.R -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-03-18T14:54:38,758 copying build/lib/sequana/resources/templates/joint_calling.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-03-18T14:54:38,764 copying build/lib/sequana/resources/templates/base.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-03-18T14:54:38,770 creating build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-03-18T14:54:38,772 copying build/lib/sequana/resources/data/JB409847.cov.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-03-18T14:54:38,854 copying build/lib/sequana/resources/data/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-03-18T14:54:38,858 copying build/lib/sequana/resources/data/virus.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-03-18T14:54:38,890 copying build/lib/sequana/resources/data/test_wrong_bed.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-03-18T14:54:38,894 copying build/lib/sequana/resources/data/JB409847.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-03-18T14:54:38,933 copying build/lib/sequana/resources/data/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-03-18T14:54:38,937 copying build/lib/sequana/resources/data/test_hg38_chr18.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-03-18T14:54:38,946 copying build/lib/sequana/resources/data/measles.fa.sorted.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-03-18T14:54:38,974 copying build/lib/sequana/resources/data/hg38_chr18.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-03-18T14:54:39,026 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-03-18T14:54:39,043 copying build/lib/sequana/resources/data/JB409847.vc.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-03-18T14:54:39,049 copying build/lib/sequana/resources/data/JB409847.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-03-18T14:54:39,056 copying build/lib/sequana/resources/data/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-03-18T14:54:39,065 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-03-18T14:54:39,083 copying build/lib/sequana/resources/data/SIRV.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-03-18T14:54:39,096 copying build/lib/sequana/resources/data/phiX174.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-03-18T14:54:39,104 copying build/lib/sequana/resources/data/panther.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-03-18T14:54:39,111 copying build/lib/sequana/resources/data/JB409847.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-03-18T14:54:39,118 copying build/lib/sequana/resources/data/JB409847.gbk -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-03-18T14:54:39,127 copying build/lib/sequana/resources/data/measles.fa.sorted.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-03-18T14:54:39,132 copying build/lib/sequana/resources/data/kegg.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-03-18T14:54:39,172 copying build/lib/sequana/krona.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:39,180 copying build/lib/sequana/phred.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:39,189 creating build/bdist.linux-armv7l/wheel/sequana/plots 2022-03-18T14:54:39,193 copying build/lib/sequana/plots/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2022-03-18T14:54:39,197 copying build/lib/sequana/plots/canvasjs_base.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2022-03-18T14:54:39,203 copying build/lib/sequana/plots/canvasjs_linegraph.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2022-03-18T14:54:39,209 copying build/lib/sequana/sequence.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:39,218 creating build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-03-18T14:54:39,220 copying build/lib/sequana/enrichment/panther.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-03-18T14:54:39,228 copying build/lib/sequana/enrichment/gsea.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-03-18T14:54:39,232 copying build/lib/sequana/enrichment/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-03-18T14:54:39,237 copying build/lib/sequana/enrichment/kegg.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-03-18T14:54:39,246 copying build/lib/sequana/enrichment/mart.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-03-18T14:54:39,256 creating build/bdist.linux-armv7l/wheel/sequana/rules 2022-03-18T14:54:39,260 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2022-03-18T14:54:39,263 copying build/lib/sequana/rules/fastq_sampling/fastq_sampling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2022-03-18T14:54:39,271 creating build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2022-03-18T14:54:39,274 copying build/lib/sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2022-03-18T14:54:39,279 creating build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2022-03-18T14:54:39,281 copying build/lib/sequana/rules/summary_pipeline/summary_pipeline.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2022-03-18T14:54:39,286 copying build/lib/sequana/rules/README.rst -> build/bdist.linux-armv7l/wheel/sequana/rules 2022-03-18T14:54:39,291 creating build/bdist.linux-armv7l/wheel/sequana/rules/joint_freebayes 2022-03-18T14:54:39,293 copying build/lib/sequana/rules/joint_freebayes/joint_freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/joint_freebayes 2022-03-18T14:54:39,300 creating build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2022-03-18T14:54:39,303 copying build/lib/sequana/rules/sequana_coverage/sequana_coverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2022-03-18T14:54:39,312 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2022-03-18T14:54:39,314 copying build/lib/sequana/rules/picard-tools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2022-03-18T14:54:39,319 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates 2022-03-18T14:54:39,321 copying build/lib/sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates 2022-03-18T14:54:39,327 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2022-03-18T14:54:39,329 copying build/lib/sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2022-03-18T14:54:39,335 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2022-03-18T14:54:39,337 copying build/lib/sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2022-03-18T14:54:39,345 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2022-03-18T14:54:39,347 copying build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2022-03-18T14:54:39,355 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2022-03-18T14:54:39,357 copying build/lib/sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2022-03-18T14:54:39,363 creating build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2022-03-18T14:54:39,364 copying build/lib/sequana/rules/feature_counts/feature_counts.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2022-03-18T14:54:39,370 creating build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling 2022-03-18T14:54:39,373 creating build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling/macs2_dynamic 2022-03-18T14:54:39,376 copying build/lib/sequana/rules/peak_calling/macs2_dynamic/macs2_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling/macs2_dynamic 2022-03-18T14:54:39,383 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller 2022-03-18T14:54:39,386 copying build/lib/sequana/rules/Variant_caller/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller 2022-03-18T14:54:39,393 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2022-03-18T14:54:39,395 copying build/lib/sequana/rules/SnpEff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2022-03-18T14:54:39,400 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2022-03-18T14:54:39,401 copying build/lib/sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2022-03-18T14:54:39,407 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2022-03-18T14:54:39,410 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2022-03-18T14:54:39,412 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2022-03-18T14:54:39,419 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2022-03-18T14:54:39,422 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2022-03-18T14:54:39,429 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff 2022-03-18T14:54:39,433 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2022-03-18T14:54:39,436 copying build/lib/sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2022-03-18T14:54:39,442 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2022-03-18T14:54:39,444 copying build/lib/sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2022-03-18T14:54:39,449 creating build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2022-03-18T14:54:39,451 copying build/lib/sequana/rules/tophat_mapping/tophat_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2022-03-18T14:54:39,457 creating build/bdist.linux-armv7l/wheel/sequana/rules/bamCoverage 2022-03-18T14:54:39,460 copying build/lib/sequana/rules/bamCoverage/bamCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bamCoverage 2022-03-18T14:54:39,467 creating build/bdist.linux-armv7l/wheel/sequana/rules/remove_blacklist 2022-03-18T14:54:39,469 copying build/lib/sequana/rules/remove_blacklist/remove_blacklist.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/remove_blacklist 2022-03-18T14:54:39,477 creating build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2022-03-18T14:54:39,479 copying build/lib/sequana/rules/SARTools/SARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2022-03-18T14:54:39,485 creating build/bdist.linux-armv7l/wheel/sequana/rules/canu 2022-03-18T14:54:39,487 copying build/lib/sequana/rules/canu/canu.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/canu 2022-03-18T14:54:39,492 creating build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2022-03-18T14:54:39,494 copying build/lib/sequana/rules/igvtools/igvtools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2022-03-18T14:54:39,501 creating build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2022-03-18T14:54:39,505 copying build/lib/sequana/rules/preSARTools/preSARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2022-03-18T14:54:39,513 creating build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2022-03-18T14:54:39,515 copying build/lib/sequana/rules/mapping_analysis/mapping_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2022-03-18T14:54:39,521 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2022-03-18T14:54:39,523 copying build/lib/sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2022-03-18T14:54:39,528 copying build/lib/sequana/rules/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules 2022-03-18T14:54:39,533 creating build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2022-03-18T14:54:39,534 copying build/lib/sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2022-03-18T14:54:39,541 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastp 2022-03-18T14:54:39,544 copying build/lib/sequana/rules/fastp/fastp.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastp 2022-03-18T14:54:39,551 creating build/bdist.linux-armv7l/wheel/sequana/rules/spades_get_fastq 2022-03-18T14:54:39,554 copying build/lib/sequana/rules/spades_get_fastq/spades_get_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spades_get_fastq 2022-03-18T14:54:39,561 creating build/bdist.linux-armv7l/wheel/sequana/rules/joint_freebayes_vcf_filter 2022-03-18T14:54:39,562 copying build/lib/sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/joint_freebayes_vcf_filter 2022-03-18T14:54:39,568 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken 2022-03-18T14:54:39,571 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/2.0 2022-03-18T14:54:39,573 copying build/lib/sequana/rules/kraken/2.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/2.0 2022-03-18T14:54:39,578 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2022-03-18T14:54:39,581 copying build/lib/sequana/rules/kraken/1.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2022-03-18T14:54:39,589 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2022-03-18T14:54:39,591 copying build/lib/sequana/rules/kraken/1.1/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2022-03-18T14:54:39,600 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr 2022-03-18T14:54:39,602 copying build/lib/sequana/rules/idr/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/idr 2022-03-18T14:54:39,607 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2022-03-18T14:54:39,609 copying build/lib/sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2022-03-18T14:54:39,614 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2022-03-18T14:54:39,616 copying build/lib/sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2022-03-18T14:54:39,624 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2022-03-18T14:54:39,626 copying build/lib/sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2022-03-18T14:54:39,634 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2022-03-18T14:54:39,636 copying build/lib/sequana/rules/idr/select_peaks/select_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2022-03-18T14:54:39,643 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2022-03-18T14:54:39,645 copying build/lib/sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2022-03-18T14:54:39,651 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2022-03-18T14:54:39,653 copying build/lib/sequana/rules/idr/union_peaks/union_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2022-03-18T14:54:39,659 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2022-03-18T14:54:39,660 copying build/lib/sequana/rules/idr/compute_idr/compute_idr.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2022-03-18T14:54:39,668 creating build/bdist.linux-armv7l/wheel/sequana/rules/falco 2022-03-18T14:54:39,671 copying build/lib/sequana/rules/falco/falco.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/falco 2022-03-18T14:54:39,678 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2022-03-18T14:54:39,681 copying build/lib/sequana/rules/salmon_mapping/salmon_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2022-03-18T14:54:39,687 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2022-03-18T14:54:39,689 copying build/lib/sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2022-03-18T14:54:39,695 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index 2022-03-18T14:54:39,697 copying build/lib/sequana/rules/bowtie2_index/bowtie2_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index 2022-03-18T14:54:39,703 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2022-03-18T14:54:39,707 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/vcf_to_bcf 2022-03-18T14:54:39,710 copying build/lib/sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/vcf_to_bcf 2022-03-18T14:54:39,718 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2022-03-18T14:54:39,720 copying build/lib/sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2022-03-18T14:54:39,727 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2022-03-18T14:54:39,729 copying build/lib/sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2022-03-18T14:54:39,734 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2022-03-18T14:54:39,736 copying build/lib/sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2022-03-18T14:54:39,742 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2022-03-18T14:54:39,745 copying build/lib/sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2022-03-18T14:54:39,751 copying build/lib/sequana/rules/codecs/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2022-03-18T14:54:39,757 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2022-03-18T14:54:39,761 copying build/lib/sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2022-03-18T14:54:39,767 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2022-03-18T14:54:39,769 copying build/lib/sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2022-03-18T14:54:39,775 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2022-03-18T14:54:39,776 copying build/lib/sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2022-03-18T14:54:39,782 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2022-03-18T14:54:39,784 copying build/lib/sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2022-03-18T14:54:39,791 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2022-03-18T14:54:39,794 copying build/lib/sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2022-03-18T14:54:39,802 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2022-03-18T14:54:39,805 copying build/lib/sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2022-03-18T14:54:39,810 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2022-03-18T14:54:39,813 copying build/lib/sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2022-03-18T14:54:39,818 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2022-03-18T14:54:39,820 copying build/lib/sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2022-03-18T14:54:39,826 creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2022-03-18T14:54:39,828 copying build/lib/sequana/rules/Pacbio/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2022-03-18T14:54:39,835 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2022-03-18T14:54:39,837 copying build/lib/sequana/rules/multiqc/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2022-03-18T14:54:39,845 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2022-03-18T14:54:39,848 copying build/lib/sequana/rules/multiqc/2.0/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2022-03-18T14:54:39,854 creating build/bdist.linux-armv7l/wheel/sequana/rules/quast 2022-03-18T14:54:39,855 copying build/lib/sequana/rules/quast/quast.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/quast 2022-03-18T14:54:39,861 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2022-03-18T14:54:39,865 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2022-03-18T14:54:39,867 copying build/lib/sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2022-03-18T14:54:39,875 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2022-03-18T14:54:39,877 copying build/lib/sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2022-03-18T14:54:39,885 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2022-03-18T14:54:39,888 copying build/lib/sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2022-03-18T14:54:39,892 copying build/lib/sequana/rules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2022-03-18T14:54:39,897 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2022-03-18T14:54:39,899 copying build/lib/sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2022-03-18T14:54:39,905 creating build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2022-03-18T14:54:39,907 copying build/lib/sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2022-03-18T14:54:39,914 creating build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2022-03-18T14:54:39,917 copying build/lib/sequana/rules/indel_realigner/indel_realigner.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2022-03-18T14:54:39,925 creating build/bdist.linux-armv7l/wheel/sequana/rules/spades 2022-03-18T14:54:39,927 copying build/lib/sequana/rules/spades/spades.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spades 2022-03-18T14:54:39,934 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_bcf_filter 2022-03-18T14:54:39,935 copying build/lib/sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_bcf_filter 2022-03-18T14:54:39,941 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_vcf_filter 2022-03-18T14:54:39,943 copying build/lib/sequana/rules/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_vcf_filter 2022-03-18T14:54:39,949 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2022-03-18T14:54:39,952 copying build/lib/sequana/rules/bwa_index/bwa_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2022-03-18T14:54:39,960 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2022-03-18T14:54:39,962 copying build/lib/sequana/rules/salmon_index/salmon_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2022-03-18T14:54:39,970 creating build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2022-03-18T14:54:39,972 copying build/lib/sequana/rules/revcomp_rule/revcomp_rule.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2022-03-18T14:54:39,978 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastqc 2022-03-18T14:54:39,980 copying build/lib/sequana/rules/fastqc/fastqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastqc 2022-03-18T14:54:39,985 creating build/bdist.linux-armv7l/wheel/sequana/rules/spp 2022-03-18T14:54:39,987 copying build/lib/sequana/rules/spp/spp.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spp 2022-03-18T14:54:39,994 creating build/bdist.linux-armv7l/wheel/sequana/rules/macs3_dynamic 2022-03-18T14:54:39,997 copying build/lib/sequana/rules/macs3_dynamic/macs3_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/macs3_dynamic 2022-03-18T14:54:40,005 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2022-03-18T14:54:40,007 copying build/lib/sequana/rules/Utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2022-03-18T14:54:40,013 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2022-03-18T14:54:40,016 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2022-03-18T14:54:40,018 copying build/lib/sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2022-03-18T14:54:40,023 copying build/lib/sequana/rules/sambamba/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2022-03-18T14:54:40,027 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2022-03-18T14:54:40,029 copying build/lib/sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2022-03-18T14:54:40,037 creating build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2022-03-18T14:54:40,039 copying build/lib/sequana/rules/rulegraph/rulegraph.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2022-03-18T14:54:40,047 creating build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2022-03-18T14:54:40,049 copying build/lib/sequana/rules/pacbio_quality/pacbio_quality.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2022-03-18T14:54:40,056 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2022-03-18T14:54:40,058 copying build/lib/sequana/rules/multiqc2/multiqc2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2022-03-18T14:54:40,063 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2022-03-18T14:54:40,065 copying build/lib/sequana/rules/samtools_depth/samtools_depth.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2022-03-18T14:54:40,071 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2022-03-18T14:54:40,073 copying build/lib/sequana/rules/star_index/star_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2022-03-18T14:54:40,081 creating build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2022-03-18T14:54:40,083 copying build/lib/sequana/rules/DupRadar/DupRadar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2022-03-18T14:54:40,091 creating build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2022-03-18T14:54:40,093 copying build/lib/sequana/rules/prokka/prokka.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2022-03-18T14:54:40,099 creating build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2022-03-18T14:54:40,101 copying build/lib/sequana/rules/spikes_counting/spikes_counting.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2022-03-18T14:54:40,107 creating build/bdist.linux-armv7l/wheel/sequana/rules/dag 2022-03-18T14:54:40,108 copying build/lib/sequana/rules/dag/dag.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/dag 2022-03-18T14:54:40,115 creating build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2022-03-18T14:54:40,117 copying build/lib/sequana/rules/rnaseqc/rnaseqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2022-03-18T14:54:40,125 creating build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2022-03-18T14:54:40,128 copying build/lib/sequana/rules/format_contigs/format_contigs.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2022-03-18T14:54:40,134 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2022-03-18T14:54:40,136 copying build/lib/sequana/rules/samtools_sort/samtools_sort.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2022-03-18T14:54:40,142 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2022-03-18T14:54:40,144 copying build/lib/sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2022-03-18T14:54:40,149 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes 2022-03-18T14:54:40,151 copying build/lib/sequana/rules/freebayes/freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes 2022-03-18T14:54:40,159 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2022-03-18T14:54:40,161 copying build/lib/sequana/rules/star_mapping/star_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2022-03-18T14:54:40,169 creating build/bdist.linux-armv7l/wheel/sequana/rules/cutadapt 2022-03-18T14:54:40,171 copying build/lib/sequana/rules/cutadapt/cutadapt.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/cutadapt 2022-03-18T14:54:40,178 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2022-03-18T14:54:40,180 copying build/lib/sequana/rules/fastq_screen/fastq_screen.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2022-03-18T14:54:40,185 creating build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2022-03-18T14:54:40,187 copying build/lib/sequana/rules/bed_to_gff/bed_to_gff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2022-03-18T14:54:40,191 copying build/lib/sequana/vcftools.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:40,197 copying build/lib/sequana/running_median.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:40,206 creating build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-03-18T14:54:40,208 copying build/lib/sequana/modules_report/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-03-18T14:54:40,217 copying build/lib/sequana/modules_report/fastq_stats.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-03-18T14:54:40,222 copying build/lib/sequana/modules_report/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-03-18T14:54:40,226 copying build/lib/sequana/modules_report/cutadapt.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-03-18T14:54:40,232 copying build/lib/sequana/modules_report/quast.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-03-18T14:54:40,237 copying build/lib/sequana/modules_report/base_module.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-03-18T14:54:40,244 copying build/lib/sequana/modules_report/summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-03-18T14:54:40,251 copying build/lib/sequana/modules_report/bwa_bam_to_fastq.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-03-18T14:54:40,256 copying build/lib/sequana/modules_report/kegg_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-03-18T14:54:40,262 copying build/lib/sequana/modules_report/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-03-18T14:54:40,266 copying build/lib/sequana/modules_report/multi_summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-03-18T14:54:40,271 copying build/lib/sequana/modules_report/trf.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-03-18T14:54:40,276 copying build/lib/sequana/modules_report/phix.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-03-18T14:54:40,283 copying build/lib/sequana/modules_report/pacbio_input_bam.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-03-18T14:54:40,289 copying build/lib/sequana/modules_report/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-03-18T14:54:40,296 copying build/lib/sequana/modules_report/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-03-18T14:54:40,302 copying build/lib/sequana/modules_report/variant_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-03-18T14:54:40,307 copying build/lib/sequana/modules_report/joint_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-03-18T14:54:40,312 copying build/lib/sequana/modules_report/bamqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-03-18T14:54:40,316 copying build/lib/sequana/modules_report/panther_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-03-18T14:54:40,324 copying build/lib/sequana/lazy.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:40,329 copying build/lib/sequana/ribodesigner.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:40,335 copying build/lib/sequana/iem.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:40,341 copying build/lib/sequana/itol.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:40,346 copying build/lib/sequana/freebayes_bcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:40,352 creating build/bdist.linux-armv7l/wheel/sequana/utils 2022-03-18T14:54:40,354 copying build/lib/sequana/utils/datatables_js.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-03-18T14:54:40,362 copying build/lib/sequana/utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-03-18T14:54:40,366 copying build/lib/sequana/utils/config.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-03-18T14:54:40,372 copying build/lib/sequana/utils/tree.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-03-18T14:54:40,379 copying build/lib/sequana/utils/singleton.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-03-18T14:54:40,383 copying build/lib/sequana/utils/df2html.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-03-18T14:54:40,387 copying build/lib/sequana/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:40,393 copying build/lib/sequana/gff3.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:40,400 copying build/lib/sequana/cnv.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:40,406 copying build/lib/sequana/canu_scanner.py -> build/bdist.linux-armv7l/wheel/sequana 2022-03-18T14:54:40,412 running install_egg_info 2022-03-18T14:54:40,463 running egg_info 2022-03-18T14:54:40,465 writing sequana.egg-info/PKG-INFO 2022-03-18T14:54:40,470 writing dependency_links to sequana.egg-info/dependency_links.txt 2022-03-18T14:54:40,474 writing top-level names to sequana.egg-info/top_level.txt 2022-03-18T14:54:40,477 writing entry points to sequana.egg-info/entry_points.txt 2022-03-18T14:54:40,481 writing requirements to sequana.egg-info/requires.txt 2022-03-18T14:54:40,701 reading manifest file 'sequana.egg-info/SOURCES.txt' 2022-03-18T14:54:40,733 reading manifest template 'MANIFEST.in' 2022-03-18T14:54:40,742 warning: no previously-included files matching '__pycache__' found under directory '*' 2022-03-18T14:54:40,749 warning: no previously-included files matching '*pyc' found under directory '*' 2022-03-18T14:54:42,815 warning: no files found matching 'test/requirements*txt' 2022-03-18T14:54:42,821 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2022-03-18T14:54:42,826 warning: no previously-included files matching '*' found under directory 'test' 2022-03-18T14:54:42,831 warning: no previously-included files matching '*' found under directory 'doc' 2022-03-18T14:54:42,836 warning: no previously-included files found matching 'sequana/rm2.py' 2022-03-18T14:54:42,909 writing manifest file 'sequana.egg-info/SOURCES.txt' 2022-03-18T14:54:42,915 Copying sequana.egg-info to build/bdist.linux-armv7l/wheel/sequana-0.13.2-py3.5.egg-info 2022-03-18T14:54:42,957 running install_scripts 2022-03-18T14:54:43,369 creating build/bdist.linux-armv7l/wheel/sequana-0.13.2.dist-info/WHEEL 2022-03-18T14:54:48,053 Building wheel for sequana (setup.py): finished with status 'done' 2022-03-18T14:54:48,114 Created wheel for sequana: filename=sequana-0.13.2-py3-none-any.whl size=3420091 sha256=ed67155f562dc737bae4631444074be53450e0198c19258b0ad1c9fc5b3a77b2 2022-03-18T14:54:48,115 Stored in directory: /tmp/pip-ephem-wheel-cache-q33s10gt/wheels/0d/2a/f0/6ded4a3fd0a95cd2681206ddeef8eaa3d4755a53604b316eed 2022-03-18T14:54:48,184 Successfully built sequana 2022-03-18T14:54:48,777 Removed build tracker: '/tmp/pip-req-tracker-zgomjhcz'