2022-03-24T15:39:55,530 Created temporary directory: /tmp/pip-ephem-wheel-cache-8q3_xz58 2022-03-24T15:39:55,535 Created temporary directory: /tmp/pip-req-tracker-yygr47sy 2022-03-24T15:39:55,536 Initialized build tracking at /tmp/pip-req-tracker-yygr47sy 2022-03-24T15:39:55,537 Created build tracker: /tmp/pip-req-tracker-yygr47sy 2022-03-24T15:39:55,537 Entered build tracker: /tmp/pip-req-tracker-yygr47sy 2022-03-24T15:39:55,538 Created temporary directory: /tmp/pip-wheel-7gsoks1l 2022-03-24T15:39:55,600 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-03-24T15:39:55,609 2 location(s) to search for versions of pdm-utils: 2022-03-24T15:39:55,609 * https://pypi.org/simple/pdm-utils/ 2022-03-24T15:39:55,609 * https://www.piwheels.org/simple/pdm-utils/ 2022-03-24T15:39:55,610 Fetching project page and analyzing links: https://pypi.org/simple/pdm-utils/ 2022-03-24T15:39:55,611 Getting page https://pypi.org/simple/pdm-utils/ 2022-03-24T15:39:55,615 Found 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https://www.piwheels.org/simple/pdm-utils/pdm_utils-0.9.9-py3-none-any.whl#sha256=ebd708b44afdbef31497b8e4474a06677e7f9b42d94df298cdc4657df3c2de17 (from https://www.piwheels.org/simple/pdm-utils/) (requires-python:>=3.6) 2022-03-24T15:39:56,278 Skipping link: not a file: https://www.piwheels.org/simple/pdm-utils/ 2022-03-24T15:39:56,279 Skipping link: not a file: https://pypi.org/simple/pdm-utils/ 2022-03-24T15:39:56,339 Given no hashes to check 1 links for project 'pdm-utils': discarding no candidates 2022-03-24T15:39:56,371 Collecting pdm-utils==0.9.21 2022-03-24T15:39:56,375 Created temporary directory: /tmp/pip-unpack-msklxeel 2022-03-24T15:39:56,809 Downloading pdm_utils-0.9.21.tar.gz (237 kB) 2022-03-24T15:39:57,344 Added pdm-utils==0.9.21 from https://files.pythonhosted.org/packages/86/c7/0f9efdc5ce105039e59d6fec3462ed068e67cd78cba75e12e75049e09c11/pdm_utils-0.9.21.tar.gz#sha256=2c016e615100d177f797c1cabc3b35edd1ac4f4259e4dc9cbc654124ff72087d to build tracker '/tmp/pip-req-tracker-yygr47sy' 2022-03-24T15:39:57,352 Created temporary directory: /tmp/pip-build-env-cgovus7w 2022-03-24T15:39:57,367 Created temporary directory: /tmp/pip-standalone-pip-nc40mq58 2022-03-24T15:39:59,687 Installing build dependencies: started 2022-03-24T15:39:59,689 Running command pip subprocess to install build dependencies 2022-03-24T15:40:09,718 Using pip 22.0.3 from /tmp/pip-standalone-pip-nc40mq58/__env_pip__.zip/pip (python 3.7) 2022-03-24T15:40:11,121 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-03-24T15:40:15,253 Collecting setuptools 2022-03-24T15:40:15,489 Using cached https://www.piwheels.org/simple/setuptools/setuptools-60.10.0-py3-none-any.whl (1.1 MB) 2022-03-24T15:40:16,158 Collecting wheel 2022-03-24T15:40:16,191 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-03-24T15:40:21,036 Installing collected packages: wheel, setuptools 2022-03-24T15:40:21,302 Creating /tmp/pip-build-env-cgovus7w/overlay/bin 2022-03-24T15:40:21,306 changing mode of /tmp/pip-build-env-cgovus7w/overlay/bin/wheel to 755 2022-03-24T15:40:25,225 Successfully installed setuptools-60.10.0 wheel-0.37.1 2022-03-24T15:40:25,407 WARNING: You are using pip version 22.0.3; however, version 22.0.4 is available. 2022-03-24T15:40:25,408 You should consider upgrading via the '/usr/bin/python3 -m pip install --upgrade pip' command. 2022-03-24T15:40:25,869 Installing build dependencies: finished with status 'done' 2022-03-24T15:40:25,895 Getting requirements to build wheel: started 2022-03-24T15:40:25,897 Running command Getting requirements to build wheel 2022-03-24T15:40:27,849 running egg_info 2022-03-24T15:40:27,919 writing manifest file 'src/pdm_utils.egg-info/SOURCES.txt' 2022-03-24T15:40:28,048 Getting requirements to build wheel: finished with status 'done' 2022-03-24T15:40:28,069 Created temporary directory: /tmp/pip-modern-metadata-65uqjfzn 2022-03-24T15:40:28,074 Preparing metadata (pyproject.toml): started 2022-03-24T15:40:28,076 Running command Preparing metadata (pyproject.toml) 2022-03-24T15:40:29,862 running dist_info 2022-03-24T15:40:29,891 creating /tmp/pip-modern-metadata-65uqjfzn/pdm_utils.egg-info 2022-03-24T15:40:29,905 writing manifest file '/tmp/pip-modern-metadata-65uqjfzn/pdm_utils.egg-info/SOURCES.txt' 2022-03-24T15:40:29,948 writing manifest file '/tmp/pip-modern-metadata-65uqjfzn/pdm_utils.egg-info/SOURCES.txt' 2022-03-24T15:40:30,238 Preparing metadata (pyproject.toml): finished with status 'done' 2022-03-24T15:40:30,253 Source in /tmp/pip-wheel-7gsoks1l/pdm-utils_de01d5758e1c4febb24005df9999938e has version 0.9.21, which satisfies requirement pdm-utils==0.9.21 from https://files.pythonhosted.org/packages/86/c7/0f9efdc5ce105039e59d6fec3462ed068e67cd78cba75e12e75049e09c11/pdm_utils-0.9.21.tar.gz#sha256=2c016e615100d177f797c1cabc3b35edd1ac4f4259e4dc9cbc654124ff72087d 2022-03-24T15:40:30,255 Removed pdm-utils==0.9.21 from https://files.pythonhosted.org/packages/86/c7/0f9efdc5ce105039e59d6fec3462ed068e67cd78cba75e12e75049e09c11/pdm_utils-0.9.21.tar.gz#sha256=2c016e615100d177f797c1cabc3b35edd1ac4f4259e4dc9cbc654124ff72087d from build tracker '/tmp/pip-req-tracker-yygr47sy' 2022-03-24T15:40:30,269 Created temporary directory: /tmp/pip-unpack-kte6z6oa 2022-03-24T15:40:30,270 Building wheels for collected packages: pdm-utils 2022-03-24T15:40:30,279 Created temporary directory: /tmp/pip-wheel-x5r37w8z 2022-03-24T15:40:30,279 Destination directory: /tmp/pip-wheel-x5r37w8z 2022-03-24T15:40:30,284 Building wheel for pdm-utils (pyproject.toml): started 2022-03-24T15:40:30,286 Running command Building wheel for pdm-utils (pyproject.toml) 2022-03-24T15:40:32,132 running bdist_wheel 2022-03-24T15:40:32,551 running build 2022-03-24T15:40:32,552 running build_py 2022-03-24T15:40:32,561 creating build 2022-03-24T15:40:32,561 creating build/lib 2022-03-24T15:40:32,563 creating build/lib/pdm_utils 2022-03-24T15:40:32,565 copying src/pdm_utils/__main__.py -> build/lib/pdm_utils 2022-03-24T15:40:32,568 copying src/pdm_utils/run.py -> build/lib/pdm_utils 2022-03-24T15:40:32,572 copying src/pdm_utils/__init__.py -> build/lib/pdm_utils 2022-03-24T15:40:32,578 creating build/lib/pdm_utils/classes 2022-03-24T15:40:32,580 copying src/pdm_utils/classes/genometriad.py -> build/lib/pdm_utils/classes 2022-03-24T15:40:32,584 copying src/pdm_utils/classes/genome.py -> build/lib/pdm_utils/classes 2022-03-24T15:40:32,590 copying src/pdm_utils/classes/trnascansehandler.py -> build/lib/pdm_utils/classes 2022-03-24T15:40:32,593 copying src/pdm_utils/classes/cdspair.py -> build/lib/pdm_utils/classes 2022-03-24T15:40:32,596 copying src/pdm_utils/classes/genomepair.py -> build/lib/pdm_utils/classes 2022-03-24T15:40:32,600 copying src/pdm_utils/classes/alchemyhandler.py -> build/lib/pdm_utils/classes 2022-03-24T15:40:32,605 copying src/pdm_utils/classes/filter.py -> build/lib/pdm_utils/classes 2022-03-24T15:40:32,610 copying src/pdm_utils/classes/fileio.py -> build/lib/pdm_utils/classes 2022-03-24T15:40:32,613 copying src/pdm_utils/classes/aragornhandler.py -> build/lib/pdm_utils/classes 2022-03-24T15:40:32,618 copying src/pdm_utils/classes/source.py -> build/lib/pdm_utils/classes 2022-03-24T15:40:32,621 copying src/pdm_utils/classes/bundle.py -> build/lib/pdm_utils/classes 2022-03-24T15:40:32,625 copying src/pdm_utils/classes/ticket.py -> build/lib/pdm_utils/classes 2022-03-24T15:40:32,629 copying src/pdm_utils/classes/dbcomparesummary.py -> build/lib/pdm_utils/classes 2022-03-24T15:40:32,634 copying src/pdm_utils/classes/tmrna.py -> build/lib/pdm_utils/classes 2022-03-24T15:40:32,639 copying src/pdm_utils/classes/randomfieldupdatehandler.py -> build/lib/pdm_utils/classes 2022-03-24T15:40:32,642 copying src/pdm_utils/classes/__init__.py -> build/lib/pdm_utils/classes 2022-03-24T15:40:32,645 copying src/pdm_utils/classes/trna.py -> build/lib/pdm_utils/classes 2022-03-24T15:40:32,652 copying src/pdm_utils/classes/cds.py -> build/lib/pdm_utils/classes 2022-03-24T15:40:32,657 copying src/pdm_utils/classes/error.py -> build/lib/pdm_utils/classes 2022-03-24T15:40:32,661 copying src/pdm_utils/classes/evaluation.py -> build/lib/pdm_utils/classes 2022-03-24T15:40:32,664 copying src/pdm_utils/classes/progress.py -> build/lib/pdm_utils/classes 2022-03-24T15:40:32,670 creating build/lib/pdm_utils/pipelines 2022-03-24T15:40:32,671 copying src/pdm_utils/pipelines/get_data.py -> build/lib/pdm_utils/pipelines 2022-03-24T15:40:32,677 copying src/pdm_utils/pipelines/export_db.py -> build/lib/pdm_utils/pipelines 2022-03-24T15:40:32,683 copying src/pdm_utils/pipelines/get_db.py -> build/lib/pdm_utils/pipelines 2022-03-24T15:40:32,687 copying src/pdm_utils/pipelines/freeze_db.py -> build/lib/pdm_utils/pipelines 2022-03-24T15:40:32,691 copying src/pdm_utils/pipelines/compare_db.py -> build/lib/pdm_utils/pipelines 2022-03-24T15:40:32,698 copying src/pdm_utils/pipelines/update_field.py -> build/lib/pdm_utils/pipelines 2022-03-24T15:40:32,702 copying src/pdm_utils/pipelines/phamerate.py -> build/lib/pdm_utils/pipelines 2022-03-24T15:40:32,706 copying src/pdm_utils/pipelines/push_db.py -> build/lib/pdm_utils/pipelines 2022-03-24T15:40:32,710 copying src/pdm_utils/pipelines/get_gb_records.py -> build/lib/pdm_utils/pipelines 2022-03-24T15:40:32,714 copying src/pdm_utils/pipelines/import_genome.py -> build/lib/pdm_utils/pipelines 2022-03-24T15:40:32,722 copying src/pdm_utils/pipelines/pham_review.py -> build/lib/pdm_utils/pipelines 2022-03-24T15:40:32,727 copying src/pdm_utils/pipelines/pham_finder.py -> build/lib/pdm_utils/pipelines 2022-03-24T15:40:32,731 copying src/pdm_utils/pipelines/__init__.py -> build/lib/pdm_utils/pipelines 2022-03-24T15:40:32,733 copying src/pdm_utils/pipelines/find_domains.py -> build/lib/pdm_utils/pipelines 2022-03-24T15:40:32,738 copying src/pdm_utils/pipelines/convert_db.py -> build/lib/pdm_utils/pipelines 2022-03-24T15:40:32,741 copying src/pdm_utils/pipelines/revise.py -> build/lib/pdm_utils/pipelines 2022-03-24T15:40:32,749 creating build/lib/pdm_utils/constants 2022-03-24T15:40:32,750 copying src/pdm_utils/constants/schema_conversions.py -> build/lib/pdm_utils/constants 2022-03-24T15:40:32,756 copying src/pdm_utils/constants/eval_descriptions.py -> build/lib/pdm_utils/constants 2022-03-24T15:40:32,761 copying src/pdm_utils/constants/db_schema_0.py -> build/lib/pdm_utils/constants 2022-03-24T15:40:32,765 copying src/pdm_utils/constants/constants.py -> build/lib/pdm_utils/constants 2022-03-24T15:40:32,769 copying src/pdm_utils/constants/__init__.py -> build/lib/pdm_utils/constants 2022-03-24T15:40:32,775 creating build/lib/pdm_utils/functions 2022-03-24T15:40:32,776 copying src/pdm_utils/functions/ncbi.py -> build/lib/pdm_utils/functions 2022-03-24T15:40:32,780 copying src/pdm_utils/functions/mysqldb.py -> build/lib/pdm_utils/functions 2022-03-24T15:40:32,785 copying src/pdm_utils/functions/configfile.py -> build/lib/pdm_utils/functions 2022-03-24T15:40:32,789 copying src/pdm_utils/functions/pham_alignment.py -> build/lib/pdm_utils/functions 2022-03-24T15:40:32,793 copying src/pdm_utils/functions/phagesdb.py -> build/lib/pdm_utils/functions 2022-03-24T15:40:32,797 copying src/pdm_utils/functions/parsing.py -> build/lib/pdm_utils/functions 2022-03-24T15:40:32,801 copying src/pdm_utils/functions/cartography.py -> build/lib/pdm_utils/functions 2022-03-24T15:40:32,804 copying src/pdm_utils/functions/fileio.py -> build/lib/pdm_utils/functions 2022-03-24T15:40:32,808 copying src/pdm_utils/functions/annotation.py -> build/lib/pdm_utils/functions 2022-03-24T15:40:32,812 copying src/pdm_utils/functions/server.py -> build/lib/pdm_utils/functions 2022-03-24T15:40:32,815 copying src/pdm_utils/functions/multiprocess.py -> build/lib/pdm_utils/functions 2022-03-24T15:40:32,818 copying src/pdm_utils/functions/url_basic.py -> build/lib/pdm_utils/functions 2022-03-24T15:40:32,822 copying src/pdm_utils/functions/flat_files.py -> build/lib/pdm_utils/functions 2022-03-24T15:40:32,828 copying src/pdm_utils/functions/subprocess.py -> build/lib/pdm_utils/functions 2022-03-24T15:40:32,831 copying src/pdm_utils/functions/mysqldb_basic.py -> build/lib/pdm_utils/functions 2022-03-24T15:40:32,835 copying src/pdm_utils/functions/rpsblast.py -> build/lib/pdm_utils/functions 2022-03-24T15:40:32,839 copying src/pdm_utils/functions/tickets.py -> build/lib/pdm_utils/functions 2022-03-24T15:40:32,843 copying src/pdm_utils/functions/pipeline_shells.py -> build/lib/pdm_utils/functions 2022-03-24T15:40:32,847 copying src/pdm_utils/functions/querying.py -> build/lib/pdm_utils/functions 2022-03-24T15:40:32,852 copying src/pdm_utils/functions/phameration.py -> build/lib/pdm_utils/functions 2022-03-24T15:40:32,857 copying src/pdm_utils/functions/__init__.py -> build/lib/pdm_utils/functions 2022-03-24T15:40:32,860 copying src/pdm_utils/functions/eval_modes.py -> build/lib/pdm_utils/functions 2022-03-24T15:40:32,863 copying src/pdm_utils/functions/multithread.py -> build/lib/pdm_utils/functions 2022-03-24T15:40:32,867 copying src/pdm_utils/functions/basic.py -> build/lib/pdm_utils/functions 2022-03-24T15:40:32,872 copying src/pdm_utils/functions/fasta.py -> build/lib/pdm_utils/functions 2022-03-24T15:40:32,875 copying src/pdm_utils/functions/pipelines_basic.py -> build/lib/pdm_utils/functions 2022-03-24T15:40:32,904 running install 2022-03-24T15:40:32,966 running install_lib 2022-03-24T15:40:32,973 creating build/bdist.linux-armv7l 2022-03-24T15:40:32,973 creating build/bdist.linux-armv7l/wheel 2022-03-24T15:40:32,977 creating build/bdist.linux-armv7l/wheel/pdm_utils 2022-03-24T15:40:32,984 creating build/bdist.linux-armv7l/wheel/pdm_utils/classes 2022-03-24T15:40:33,082 creating build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2022-03-24T15:40:33,167 creating build/bdist.linux-armv7l/wheel/pdm_utils/constants 2022-03-24T15:40:33,191 creating build/bdist.linux-armv7l/wheel/pdm_utils/functions 2022-03-24T15:40:33,291 running install_egg_info 2022-03-24T15:40:33,329 running egg_info 2022-03-24T15:40:33,380 writing manifest file 'src/pdm_utils.egg-info/SOURCES.txt' 2022-03-24T15:40:33,383 Copying src/pdm_utils.egg-info to build/bdist.linux-armv7l/wheel/pdm_utils-0.9.21-py3.7.egg-info 2022-03-24T15:40:33,405 running install_scripts 2022-03-24T15:40:34,240 Building wheel for pdm-utils (pyproject.toml): finished with status 'done' 2022-03-24T15:40:34,269 Created wheel for pdm-utils: filename=pdm_utils-0.9.21-py3-none-any.whl size=267203 sha256=62c8c97173d79e04eeb4878ad0cf605f5bf173540f9c81bccd89d25058da4ceb 2022-03-24T15:40:34,272 Stored in directory: /tmp/pip-ephem-wheel-cache-8q3_xz58/wheels/a0/10/f6/078f937eb6b4ffa8c214cd3ca005b21a68da3eb358447cd533 2022-03-24T15:40:34,303 Successfully built pdm-utils 2022-03-24T15:40:34,338 Removed build tracker: '/tmp/pip-req-tracker-yygr47sy'