2022-03-25T10:20:24,692 Created temporary directory: /tmp/pip-ephem-wheel-cache-xfc4b1ld
2022-03-25T10:20:24,697 Created temporary directory: /tmp/pip-req-tracker-4b_k_xbx
2022-03-25T10:20:24,698 Initialized build tracking at /tmp/pip-req-tracker-4b_k_xbx
2022-03-25T10:20:24,698 Created build tracker: /tmp/pip-req-tracker-4b_k_xbx
2022-03-25T10:20:24,699 Entered build tracker: /tmp/pip-req-tracker-4b_k_xbx
2022-03-25T10:20:24,700 Created temporary directory: /tmp/pip-wheel-q9q11ayk
2022-03-25T10:20:24,768 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-03-25T10:20:24,777 2 location(s) to search for versions of pymlst:
2022-03-25T10:20:24,777 * https://pypi.org/simple/pymlst/
2022-03-25T10:20:24,777 * https://www.piwheels.org/simple/pymlst/
2022-03-25T10:20:24,778 Fetching project page and analyzing links: https://pypi.org/simple/pymlst/
2022-03-25T10:20:24,779 Getting page https://pypi.org/simple/pymlst/
2022-03-25T10:20:24,783 Found index url https://pypi.org/simple
2022-03-25T10:20:24,894   Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/c9/58/b20aff870603ed350a23e651f3051764f84411f47dce6a04fb7005da52a4/PyMLST-2.0.1-py3-none-any.whl#sha256=2efa447c8917c7ca6e04383e4b8e474152c89700a8376612bd96d5c9ca9c7ffe (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0)
2022-03-25T10:20:24,894   Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/ee/ae/cb1ae640761c8bd7001800973a72b475552793dd99b8caa5e078f29a0faa/PyMLST-2.1.0-py3-none-any.whl#sha256=f0a9e824bcf269f71d332416112e5d40695bdc6fda27d72b7ad7a44d7c5383f1 (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0)
2022-03-25T10:20:24,895   Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/46/2d/d32aed32e3a77ae21226a144f0ca31b040907cfa65c6b0de4c95a49768bf/PyMLST-2.1.1-py3-none-any.whl#sha256=0bf8364b8a0ceb284d478e0e03f81316a42cf8d10a794352ae2eacfb5c0ea449 (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0)
2022-03-25T10:20:24,895   Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/a1/ac/76b9312b65e1f7f7638b6eb46cecb9341c7d55a34a9796b96ce22366522f/PyMLST-2.1.2-py3-none-any.whl#sha256=277dd0dd997bc1dd349d1f9d8f9ba977ad07775df842b37021bbc0d2df546aa4 (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0)
2022-03-25T10:20:24,897   Found link https://files.pythonhosted.org/packages/b8/96/cca409adee7a3c61adc124ac12da584545819427f10487a01d84eadc71c5/PyMLST-2.1.2.tar.gz#sha256=63255678697375fd2f1f0d7ddbb4aa6e12062fdbbd9df26a8092a669d6e244b9 (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0), version: 2.1.2
2022-03-25T10:20:24,898 Fetching project page and analyzing links: https://www.piwheels.org/simple/pymlst/
2022-03-25T10:20:24,899 Getting page https://www.piwheels.org/simple/pymlst/
2022-03-25T10:20:24,901 Found index url https://www.piwheels.org/simple
2022-03-25T10:20:25,117 Skipping link: not a file: https://www.piwheels.org/simple/pymlst/
2022-03-25T10:20:25,118 Skipping link: not a file: https://pypi.org/simple/pymlst/
2022-03-25T10:20:25,151 Given no hashes to check 1 links for project 'pymlst': discarding no candidates
2022-03-25T10:20:25,182 Collecting pymlst==2.1.2
2022-03-25T10:20:25,186   Created temporary directory: /tmp/pip-unpack-gt66uqmx
2022-03-25T10:20:25,416   Downloading PyMLST-2.1.2.tar.gz (41 kB)
2022-03-25T10:20:25,730   Added pymlst==2.1.2 from https://files.pythonhosted.org/packages/b8/96/cca409adee7a3c61adc124ac12da584545819427f10487a01d84eadc71c5/PyMLST-2.1.2.tar.gz#sha256=63255678697375fd2f1f0d7ddbb4aa6e12062fdbbd9df26a8092a669d6e244b9 to build tracker '/tmp/pip-req-tracker-4b_k_xbx'
2022-03-25T10:20:25,732   Running setup.py (path:/tmp/pip-wheel-q9q11ayk/pymlst_f6b706b6f52d41f8b0f844b0e909aa11/setup.py) egg_info for package pymlst
2022-03-25T10:20:25,733   Created temporary directory: /tmp/pip-pip-egg-info-o6kc6y9k
2022-03-25T10:20:25,733   Preparing metadata (setup.py): started
2022-03-25T10:20:25,735   Running command python setup.py egg_info
2022-03-25T10:20:27,925   running egg_info
2022-03-25T10:20:27,930   creating /tmp/pip-pip-egg-info-o6kc6y9k/PyMLST.egg-info
2022-03-25T10:20:27,946   writing manifest file '/tmp/pip-pip-egg-info-o6kc6y9k/PyMLST.egg-info/SOURCES.txt'
2022-03-25T10:20:27,993   writing manifest file '/tmp/pip-pip-egg-info-o6kc6y9k/PyMLST.egg-info/SOURCES.txt'
2022-03-25T10:20:27,995   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:726: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2022-03-25T10:20:27,996     % (opt, underscore_opt)
2022-03-25T10:20:27,996   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:726: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2022-03-25T10:20:27,997     % (opt, underscore_opt)
2022-03-25T10:20:28,124   Preparing metadata (setup.py): finished with status 'done'
2022-03-25T10:20:28,137   Source in /tmp/pip-wheel-q9q11ayk/pymlst_f6b706b6f52d41f8b0f844b0e909aa11 has version 2.1.2, which satisfies requirement pymlst==2.1.2 from https://files.pythonhosted.org/packages/b8/96/cca409adee7a3c61adc124ac12da584545819427f10487a01d84eadc71c5/PyMLST-2.1.2.tar.gz#sha256=63255678697375fd2f1f0d7ddbb4aa6e12062fdbbd9df26a8092a669d6e244b9
2022-03-25T10:20:28,139   Removed pymlst==2.1.2 from https://files.pythonhosted.org/packages/b8/96/cca409adee7a3c61adc124ac12da584545819427f10487a01d84eadc71c5/PyMLST-2.1.2.tar.gz#sha256=63255678697375fd2f1f0d7ddbb4aa6e12062fdbbd9df26a8092a669d6e244b9 from build tracker '/tmp/pip-req-tracker-4b_k_xbx'
2022-03-25T10:20:28,154 Created temporary directory: /tmp/pip-unpack-ceujkqeo
2022-03-25T10:20:28,155 Building wheels for collected packages: pymlst
2022-03-25T10:20:28,165   Created temporary directory: /tmp/pip-wheel-vtncqs9p
2022-03-25T10:20:28,166   Building wheel for pymlst (setup.py): started
2022-03-25T10:20:28,168   Destination directory: /tmp/pip-wheel-vtncqs9p
2022-03-25T10:20:28,168   Running command python setup.py bdist_wheel
2022-03-25T10:20:29,835   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:726: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2022-03-25T10:20:29,836     % (opt, underscore_opt)
2022-03-25T10:20:30,253   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:726: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2022-03-25T10:20:30,254     % (opt, underscore_opt)
2022-03-25T10:20:30,351   running bdist_wheel
2022-03-25T10:20:30,360   running build
2022-03-25T10:20:30,360   running build_py
2022-03-25T10:20:30,370   creating build
2022-03-25T10:20:30,371   creating build/lib
2022-03-25T10:20:30,372   creating build/lib/pymlst
2022-03-25T10:20:30,375   copying pymlst/version.py -> build/lib/pymlst
2022-03-25T10:20:30,378   copying pymlst/cmd.py -> build/lib/pymlst
2022-03-25T10:20:30,382   copying pymlst/__init__.py -> build/lib/pymlst
2022-03-25T10:20:30,385   copying pymlst/config.py -> build/lib/pymlst
2022-03-25T10:20:30,390   creating build/lib/pymlst/wg
2022-03-25T10:20:30,392   copying pymlst/wg/model.py -> build/lib/pymlst/wg
2022-03-25T10:20:30,395   copying pymlst/wg/__init__.py -> build/lib/pymlst/wg
2022-03-25T10:20:30,399   copying pymlst/wg/extractors.py -> build/lib/pymlst/wg
2022-03-25T10:20:30,403   copying pymlst/wg/core.py -> build/lib/pymlst/wg
2022-03-25T10:20:30,410   creating build/lib/pymlst/cla
2022-03-25T10:20:30,412   copying pymlst/cla/model.py -> build/lib/pymlst/cla
2022-03-25T10:20:30,415   copying pymlst/cla/__init__.py -> build/lib/pymlst/cla
2022-03-25T10:20:30,418   copying pymlst/cla/core.py -> build/lib/pymlst/cla
2022-03-25T10:20:30,426   creating build/lib/pymlst/common
2022-03-25T10:20:30,427   copying pymlst/common/web.py -> build/lib/pymlst/common
2022-03-25T10:20:30,432   copying pymlst/common/kma.py -> build/lib/pymlst/common
2022-03-25T10:20:30,436   copying pymlst/common/mafft.py -> build/lib/pymlst/common
2022-03-25T10:20:30,440   copying pymlst/common/exceptions.py -> build/lib/pymlst/common
2022-03-25T10:20:30,444   copying pymlst/common/psl.py -> build/lib/pymlst/common
2022-03-25T10:20:30,448   copying pymlst/common/flag.py -> build/lib/pymlst/common
2022-03-25T10:20:30,451   copying pymlst/common/blat.py -> build/lib/pymlst/common
2022-03-25T10:20:30,454   copying pymlst/common/__init__.py -> build/lib/pymlst/common
2022-03-25T10:20:30,457   copying pymlst/common/utils.py -> build/lib/pymlst/common
2022-03-25T10:20:30,463   creating build/lib/pymlst/wg/commands
2022-03-25T10:20:30,465   copying pymlst/wg/commands/remove.py -> build/lib/pymlst/wg/commands
2022-03-25T10:20:30,468   copying pymlst/wg/commands/subgraph.py -> build/lib/pymlst/wg/commands
2022-03-25T10:20:30,472   copying pymlst/wg/commands/mlst.py -> build/lib/pymlst/wg/commands
2022-03-25T10:20:30,475   copying pymlst/wg/commands/create.py -> build/lib/pymlst/wg/commands
2022-03-25T10:20:30,479   copying pymlst/wg/commands/msa.py -> build/lib/pymlst/wg/commands
2022-03-25T10:20:30,482   copying pymlst/wg/commands/gene.py -> build/lib/pymlst/wg/commands
2022-03-25T10:20:30,485   copying pymlst/wg/commands/add.py -> build/lib/pymlst/wg/commands
2022-03-25T10:20:30,489   copying pymlst/wg/commands/recombinaison.py -> build/lib/pymlst/wg/commands
2022-03-25T10:20:30,493   copying pymlst/wg/commands/strain.py -> build/lib/pymlst/wg/commands
2022-03-25T10:20:30,496   copying pymlst/wg/commands/distance.py -> build/lib/pymlst/wg/commands
2022-03-25T10:20:30,499   copying pymlst/wg/commands/stats.py -> build/lib/pymlst/wg/commands
2022-03-25T10:20:30,502   copying pymlst/wg/commands/__init__.py -> build/lib/pymlst/wg/commands
2022-03-25T10:20:30,505   copying pymlst/wg/commands/import.py -> build/lib/pymlst/wg/commands
2022-03-25T10:20:30,509   copying pymlst/wg/commands/sequence.py -> build/lib/pymlst/wg/commands
2022-03-25T10:20:30,513   copying pymlst/wg/commands/add2.py -> build/lib/pymlst/wg/commands
2022-03-25T10:20:30,518   creating build/lib/pymlst/cla/commands
2022-03-25T10:20:30,520   copying pymlst/cla/commands/remove.py -> build/lib/pymlst/cla/commands
2022-03-25T10:20:30,525   copying pymlst/cla/commands/create.py -> build/lib/pymlst/cla/commands
2022-03-25T10:20:30,529   copying pymlst/cla/commands/search.py -> build/lib/pymlst/cla/commands
2022-03-25T10:20:30,533   copying pymlst/cla/commands/search2.py -> build/lib/pymlst/cla/commands
2022-03-25T10:20:30,537   copying pymlst/cla/commands/__init__.py -> build/lib/pymlst/cla/commands
2022-03-25T10:20:30,540   copying pymlst/cla/commands/import.py -> build/lib/pymlst/cla/commands
2022-03-25T10:20:30,545   creating build/lib/pymlst/common/commands
2022-03-25T10:20:30,548   copying pymlst/common/commands/configure.py -> build/lib/pymlst/common/commands
2022-03-25T10:20:30,553   copying pymlst/common/commands/__init__.py -> build/lib/pymlst/common/commands
2022-03-25T10:20:30,556   running egg_info
2022-03-25T10:20:30,633   writing manifest file 'PyMLST.egg-info/SOURCES.txt'
2022-03-25T10:20:30,642   creating build/lib/pymlst/data
2022-03-25T10:20:30,644   creating build/lib/pymlst/data/alembic
2022-03-25T10:20:30,646   copying pymlst/data/alembic/alembic.ini -> build/lib/pymlst/data/alembic
2022-03-25T10:20:30,651   creating build/lib/pymlst/data/alembic/cla
2022-03-25T10:20:30,653   copying pymlst/data/alembic/cla/env.py -> build/lib/pymlst/data/alembic/cla
2022-03-25T10:20:30,658   copying pymlst/data/alembic/cla/script.py.mako -> build/lib/pymlst/data/alembic/cla
2022-03-25T10:20:30,662   creating build/lib/pymlst/data/alembic/cla/versions
2022-03-25T10:20:30,664   copying pymlst/data/alembic/cla/versions/21efe503d07d_initial.py -> build/lib/pymlst/data/alembic/cla/versions
2022-03-25T10:20:30,669   creating build/lib/pymlst/data/alembic/wg
2022-03-25T10:20:30,671   copying pymlst/data/alembic/wg/env.py -> build/lib/pymlst/data/alembic/wg
2022-03-25T10:20:30,676   copying pymlst/data/alembic/wg/script.py.mako -> build/lib/pymlst/data/alembic/wg
2022-03-25T10:20:30,680   creating build/lib/pymlst/data/alembic/wg/versions
2022-03-25T10:20:30,682   copying pymlst/data/alembic/wg/versions/52ae99cb5f33_initial.py -> build/lib/pymlst/data/alembic/wg/versions
2022-03-25T10:20:30,705   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-03-25T10:20:30,705     setuptools.SetuptoolsDeprecationWarning,
2022-03-25T10:20:30,710   running install
2022-03-25T10:20:30,773   running install_lib
2022-03-25T10:20:30,781   creating build/bdist.linux-armv7l
2022-03-25T10:20:30,781   creating build/bdist.linux-armv7l/wheel
2022-03-25T10:20:30,785   creating build/bdist.linux-armv7l/wheel/pymlst
2022-03-25T10:20:30,792   creating build/bdist.linux-armv7l/wheel/pymlst/data
2022-03-25T10:20:30,794   creating build/bdist.linux-armv7l/wheel/pymlst/data/alembic
2022-03-25T10:20:30,801   creating build/bdist.linux-armv7l/wheel/pymlst/data/alembic/wg
2022-03-25T10:20:30,808   creating build/bdist.linux-armv7l/wheel/pymlst/data/alembic/wg/versions
2022-03-25T10:20:30,819   creating build/bdist.linux-armv7l/wheel/pymlst/data/alembic/cla
2022-03-25T10:20:30,827   creating build/bdist.linux-armv7l/wheel/pymlst/data/alembic/cla/versions
2022-03-25T10:20:30,841   creating build/bdist.linux-armv7l/wheel/pymlst/wg
2022-03-25T10:20:30,844   creating build/bdist.linux-armv7l/wheel/pymlst/wg/commands
2022-03-25T10:20:30,913   creating build/bdist.linux-armv7l/wheel/pymlst/cla
2022-03-25T10:20:30,916   creating build/bdist.linux-armv7l/wheel/pymlst/cla/commands
2022-03-25T10:20:30,955   creating build/bdist.linux-armv7l/wheel/pymlst/common
2022-03-25T10:20:30,967   creating build/bdist.linux-armv7l/wheel/pymlst/common/commands
2022-03-25T10:20:30,995   running install_egg_info
2022-03-25T10:20:31,011   Copying PyMLST.egg-info to build/bdist.linux-armv7l/wheel/PyMLST-2.1.2-py3.7.egg-info
2022-03-25T10:20:31,035   running install_scripts
2022-03-25T10:20:31,590   Building wheel for pymlst (setup.py): finished with status 'done'
2022-03-25T10:20:31,599   Created wheel for pymlst: filename=PyMLST-2.1.2-py3-none-any.whl size=56364 sha256=23fec25be78d92f9683e799227d86c9a19ca909d5f9ecae088c1d70ef372395b
2022-03-25T10:20:31,601   Stored in directory: /tmp/pip-ephem-wheel-cache-xfc4b1ld/wheels/a4/67/50/a8f18276a3417542dffeb10ac6fc2a2b0d92e49ee9f9af6147
2022-03-25T10:20:31,631 Successfully built pymlst
2022-03-25T10:20:31,643 Removed build tracker: '/tmp/pip-req-tracker-4b_k_xbx'