2022-03-29T14:24:33,911 Created temporary directory: /tmp/pip-ephem-wheel-cache-tapgrh7e
2022-03-29T14:24:33,916 Created temporary directory: /tmp/pip-req-tracker-jo9o02wo
2022-03-29T14:24:33,917 Initialized build tracking at /tmp/pip-req-tracker-jo9o02wo
2022-03-29T14:24:33,917 Created build tracker: /tmp/pip-req-tracker-jo9o02wo
2022-03-29T14:24:33,918 Entered build tracker: /tmp/pip-req-tracker-jo9o02wo
2022-03-29T14:24:33,919 Created temporary directory: /tmp/pip-wheel-aqhlt77c
2022-03-29T14:24:33,992 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-03-29T14:24:34,001 2 location(s) to search for versions of pyslow5:
2022-03-29T14:24:34,001 * https://pypi.org/simple/pyslow5/
2022-03-29T14:24:34,001 * https://www.piwheels.org/simple/pyslow5/
2022-03-29T14:24:34,002 Fetching project page and analyzing links: https://pypi.org/simple/pyslow5/
2022-03-29T14:24:34,003 Getting page https://pypi.org/simple/pyslow5/
2022-03-29T14:24:34,006 Found index url https://pypi.org/simple
2022-03-29T14:24:34,119   Found link https://files.pythonhosted.org/packages/23/0d/38c8cfedd09e7f753347b6ecd717a101c7236daf2ecccb34d44cedc6f125/pyslow5-0.2.0a1.tar.gz#sha256=a72b744ec652ba25eee5060748f8df8a5dc49eee126f48b7682f8d11d6cb434b (from https://pypi.org/simple/pyslow5/), version: 0.2.0a1
2022-03-29T14:24:34,121   Found link https://files.pythonhosted.org/packages/41/8b/eed2c94d79c0af2a69cddfcbc774697dbac35e0a053f7bfd452a629aca4a/pyslow5-0.3.0a1.tar.gz#sha256=5b9a25b33d15d6fba531f82deec6244699baedc2dee29dcd848cecc1555e4e60 (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.3.0a1
2022-03-29T14:24:34,122   Found link https://files.pythonhosted.org/packages/f5/5d/dbbfdb907972c60c3df0cf2e055b307101f0244717b3b84bc58db8c5fe5c/pyslow5-0.3.0.tar.gz#sha256=6f902d9ca38c290253a008a96ff023dcdfcd8d7348b7bde8a0d4ee85eed5ba2b (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.3.0
2022-03-29T14:24:34,123   Found link https://files.pythonhosted.org/packages/83/db/b907cf8f56a7d32c7daf087cd83050b6fcf5e9fc0bf16c6bd1a685b98831/pyslow5-0.4.0.tar.gz#sha256=078e6964af086dc8d2dcdd458a5b3db9cdc27c026c66d37af2e3fda01e9a566e (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.4.0
2022-03-29T14:24:34,124 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyslow5/
2022-03-29T14:24:34,125 Getting page https://www.piwheels.org/simple/pyslow5/
2022-03-29T14:24:34,127 Found index url https://www.piwheels.org/simple
2022-03-29T14:24:34,361   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.4.0-cp37-cp37m-linux_armv7l.whl#sha256=9d380221488f9191de4d12d2478ff8ec8826840a26958778c7ccf312fba5beca (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-03-29T14:24:34,362   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.4.0-cp37-cp37m-linux_armv6l.whl#sha256=9d380221488f9191de4d12d2478ff8ec8826840a26958778c7ccf312fba5beca (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-03-29T14:24:34,363   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.4.0-cp35-cp35m-linux_armv7l.whl#sha256=a6ef398f53044a2e346bc30d9f507aaf79303d8153daac586149dc681fbf322c (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-03-29T14:24:34,363   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.4.0-cp35-cp35m-linux_armv6l.whl#sha256=a6ef398f53044a2e346bc30d9f507aaf79303d8153daac586149dc681fbf322c (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-03-29T14:24:34,364   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp39-cp39-linux_armv7l.whl#sha256=b701f6753a8e33639159a38a9ed09212abf70cb80b413fff7245fc904d17a8de (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-03-29T14:24:34,364   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp39-cp39-linux_armv6l.whl#sha256=b701f6753a8e33639159a38a9ed09212abf70cb80b413fff7245fc904d17a8de (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-03-29T14:24:34,365   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp37-cp37m-linux_armv7l.whl#sha256=0fc9a145e085fb51abea1d14962378dd6746af7d623b3c773a21236b69a07f7d (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-03-29T14:24:34,365   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp37-cp37m-linux_armv6l.whl#sha256=0fc9a145e085fb51abea1d14962378dd6746af7d623b3c773a21236b69a07f7d (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-03-29T14:24:34,366   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp35-cp35m-linux_armv7l.whl#sha256=89f8c303a4b46e5d4d93a60ce5231face90b841baa1e27b4b8fc2f2d73d36d2d (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-03-29T14:24:34,366   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp35-cp35m-linux_armv6l.whl#sha256=89f8c303a4b46e5d4d93a60ce5231face90b841baa1e27b4b8fc2f2d73d36d2d (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-03-29T14:24:34,367   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp39-cp39-linux_armv7l.whl#sha256=c237e6b28164ceb880925c3306fad541230757b454e99331d9e703e174f93044 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-03-29T14:24:34,367   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp39-cp39-linux_armv6l.whl#sha256=c237e6b28164ceb880925c3306fad541230757b454e99331d9e703e174f93044 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-03-29T14:24:34,368   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp37-cp37m-linux_armv7l.whl#sha256=f3b339ad5eb12b3614fd8cbfa976565490be6471edb885f1518c44748f7f6e7c (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-03-29T14:24:34,368   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp37-cp37m-linux_armv6l.whl#sha256=f3b339ad5eb12b3614fd8cbfa976565490be6471edb885f1518c44748f7f6e7c (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-03-29T14:24:34,369   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp35-cp35m-linux_armv7l.whl#sha256=4125554be93c113129cf73a27c1b57f46b186115dc541cf7bb02b3161800ff06 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-03-29T14:24:34,369   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp35-cp35m-linux_armv6l.whl#sha256=4125554be93c113129cf73a27c1b57f46b186115dc541cf7bb02b3161800ff06 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-03-29T14:24:34,370   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp39-cp39-linux_armv7l.whl#sha256=cde6479a69345d4c2bef55beeb0ab67909d74e8f91a2ec5ef1a0f390aaa3c0dd (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-03-29T14:24:34,370   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp39-cp39-linux_armv6l.whl#sha256=cde6479a69345d4c2bef55beeb0ab67909d74e8f91a2ec5ef1a0f390aaa3c0dd (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-03-29T14:24:34,371   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp37-cp37m-linux_armv7l.whl#sha256=1e44f77d160ed7f970085e6bbd34c072504cd012441dfab74f56f9115217f60a (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-03-29T14:24:34,371   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp37-cp37m-linux_armv6l.whl#sha256=1e44f77d160ed7f970085e6bbd34c072504cd012441dfab74f56f9115217f60a (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-03-29T14:24:34,372   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp35-cp35m-linux_armv7l.whl#sha256=778a99e023f739e757f3a8ac054aaf245b3c3855b3781ba5f9f17403f1f2f323 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-03-29T14:24:34,372   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp35-cp35m-linux_armv6l.whl#sha256=778a99e023f739e757f3a8ac054aaf245b3c3855b3781ba5f9f17403f1f2f323 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-03-29T14:24:34,373 Skipping link: not a file: https://www.piwheels.org/simple/pyslow5/
2022-03-29T14:24:34,373 Skipping link: not a file: https://pypi.org/simple/pyslow5/
2022-03-29T14:24:34,419 Given no hashes to check 1 links for project 'pyslow5': discarding no candidates
2022-03-29T14:24:34,460 Collecting pyslow5==0.4.0
2022-03-29T14:24:34,465   Created temporary directory: /tmp/pip-unpack-1v16kkpe
2022-03-29T14:24:34,556   Downloading pyslow5-0.4.0.tar.gz (237 kB)
2022-03-29T14:24:35,101   Added pyslow5==0.4.0 from https://files.pythonhosted.org/packages/83/db/b907cf8f56a7d32c7daf087cd83050b6fcf5e9fc0bf16c6bd1a685b98831/pyslow5-0.4.0.tar.gz#sha256=078e6964af086dc8d2dcdd458a5b3db9cdc27c026c66d37af2e3fda01e9a566e to build tracker '/tmp/pip-req-tracker-jo9o02wo'
2022-03-29T14:24:35,102   Running setup.py (path:/tmp/pip-wheel-aqhlt77c/pyslow5_9d71442cf864477a9585ee58aef36028/setup.py) egg_info for package pyslow5
2022-03-29T14:24:35,104   Created temporary directory: /tmp/pip-pip-egg-info-dv7aq_rg
2022-03-29T14:24:35,104   Preparing metadata (setup.py): started
2022-03-29T14:24:35,106   Running command python setup.py egg_info
2022-03-29T14:24:38,258   running egg_info
2022-03-29T14:24:38,263   creating /tmp/pip-pip-egg-info-dv7aq_rg/pyslow5.egg-info
2022-03-29T14:24:38,276   writing manifest file '/tmp/pip-pip-egg-info-dv7aq_rg/pyslow5.egg-info/SOURCES.txt'
2022-03-29T14:24:38,326   writing manifest file '/tmp/pip-pip-egg-info-dv7aq_rg/pyslow5.egg-info/SOURCES.txt'
2022-03-29T14:24:38,513   Preparing metadata (setup.py): finished with status 'done'
2022-03-29T14:24:38,527   Source in /tmp/pip-wheel-aqhlt77c/pyslow5_9d71442cf864477a9585ee58aef36028 has version 0.4.0, which satisfies requirement pyslow5==0.4.0 from https://files.pythonhosted.org/packages/83/db/b907cf8f56a7d32c7daf087cd83050b6fcf5e9fc0bf16c6bd1a685b98831/pyslow5-0.4.0.tar.gz#sha256=078e6964af086dc8d2dcdd458a5b3db9cdc27c026c66d37af2e3fda01e9a566e
2022-03-29T14:24:38,529   Removed pyslow5==0.4.0 from https://files.pythonhosted.org/packages/83/db/b907cf8f56a7d32c7daf087cd83050b6fcf5e9fc0bf16c6bd1a685b98831/pyslow5-0.4.0.tar.gz#sha256=078e6964af086dc8d2dcdd458a5b3db9cdc27c026c66d37af2e3fda01e9a566e from build tracker '/tmp/pip-req-tracker-jo9o02wo'
2022-03-29T14:24:38,545 Created temporary directory: /tmp/pip-unpack-o7n041x5
2022-03-29T14:24:38,546 Building wheels for collected packages: pyslow5
2022-03-29T14:24:38,556   Created temporary directory: /tmp/pip-wheel-i2e1i036
2022-03-29T14:24:38,556   Building wheel for pyslow5 (setup.py): started
2022-03-29T14:24:38,558   Destination directory: /tmp/pip-wheel-i2e1i036
2022-03-29T14:24:38,559   Running command python setup.py bdist_wheel
2022-03-29T14:24:41,420   running bdist_wheel
2022-03-29T14:24:41,429   running build
2022-03-29T14:24:41,429   running build_ext
2022-03-29T14:24:42,878   /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-aqhlt77c/pyslow5_9d71442cf864477a9585ee58aef36028/python/pyslow5.pxd
2022-03-29T14:24:42,878     tree = Parsing.p_module(s, pxd, full_module_name)
2022-03-29T14:24:47,808   creating build
2022-03-29T14:24:47,809   creating build/temp.linux-armv7l-3.9
2022-03-29T14:24:47,811   creating build/temp.linux-armv7l-3.9/python
2022-03-29T14:24:47,813   creating build/temp.linux-armv7l-3.9/src
2022-03-29T14:24:47,815   creating build/temp.linux-armv7l-3.9/thirdparty
2022-03-29T14:24:47,816   creating build/temp.linux-armv7l-3.9/thirdparty/streamvbyte
2022-03-29T14:24:47,818   creating build/temp.linux-armv7l-3.9/thirdparty/streamvbyte/src
2022-03-29T14:24:47,820   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c python/pyslow5.c -o build/temp.linux-armv7l-3.9/python/pyslow5.o -g -Wall -O2 -std=c99
2022-03-29T14:24:48,808   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2022-03-29T14:24:48,809                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-03-29T14:24:48,809                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-03-29T14:24:48,810                    from python/pyslow5.c:684:
2022-03-29T14:24:48,810   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-03-29T14:24:48,811      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-03-29T14:24:48,814         |  ^~~~~~~
2022-03-29T14:25:53,285   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c src/slow5.c -o build/temp.linux-armv7l-3.9/src/slow5.o -g -Wall -O2 -std=c99
2022-03-29T14:25:53,752   src/slow5.c: In function ‘slow5_init’:
2022-03-29T14:25:53,755   src/slow5.c:182:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2022-03-29T14:25:53,756     182 |     if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) {
2022-03-29T14:25:53,756         |                                                   ^~
2022-03-29T14:25:53,870   src/slow5.c: In function ‘slow5_get_mem’:
2022-03-29T14:25:53,872   src/slow5.c:2180:49: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-03-29T14:25:53,873    2180 |     if (pread(s5p->meta.fd, mem, bytes, offset) != bytes) {
2022-03-29T14:25:53,873         |                                                 ^~
2022-03-29T14:25:53,876   In file included from include/slow5/slow5.h:55,
2022-03-29T14:25:53,877                    from src/slow5.c:40:
2022-03-29T14:25:53,877   include/slow5/slow5_error.h:79:28: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 5 has type ‘off_t’ {aka ‘long int’} [-Wformat=]
2022-03-29T14:25:53,877      79 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m "
2022-03-29T14:25:53,878         |                            ^~~~~~~~~~~~~~~~~~~~~~~~
2022-03-29T14:25:53,878   include/slow5/slow5_error.h:116:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’
2022-03-29T14:25:53,878     116 |         fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \
2022-03-29T14:25:53,879         |                         ^~~~~~~~~~~~~~~~~~
2022-03-29T14:25:53,879   src/slow5.c:2181:9: note: in expansion of macro ‘SLOW5_ERROR’
2022-03-29T14:25:53,879    2181 |         SLOW5_ERROR("Failed to pread '%zu' bytes at offset '%zu' from slow5 file '%s'.",
2022-03-29T14:25:53,880         |         ^~~~~~~~~~~
2022-03-29T14:25:53,914   src/slow5.c: In function ‘slow5_rec_aux_parse’:
2022-03-29T14:25:53,918   include/slow5/slow5_error.h:79:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
2022-03-29T14:25:53,918      79 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m "
2022-03-29T14:25:53,918         |                            ^~~~~~~~~~~~~~~~~~~~~~~~
2022-03-29T14:25:53,919   include/slow5/slow5_error.h:116:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’
2022-03-29T14:25:53,919     116 |         fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \
2022-03-29T14:25:53,919         |                         ^~~~~~~~~~~~~~~~~~
2022-03-29T14:25:53,920   src/slow5.c:2771:17: note: in expansion of macro ‘SLOW5_ERROR’
2022-03-29T14:25:53,920    2771 |                 SLOW5_ERROR("Auxiliary field '%s' is missing in record. At offset '%" PRIu64 "' and record size is '%" PRIu64 "'.", aux_meta->attrs[i], offset, read_size);
2022-03-29T14:25:53,920         |                 ^~~~~~~~~~~
2022-03-29T14:26:15,234   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c src/slow5_idx.c -o build/temp.linux-armv7l-3.9/src/slow5_idx.o -g -Wall -O2 -std=c99
2022-03-29T14:26:17,453   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c src/slow5_misc.c -o build/temp.linux-armv7l-3.9/src/slow5_misc.o -g -Wall -O2 -std=c99
2022-03-29T14:26:18,541   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c src/slow5_press.c -o build/temp.linux-armv7l-3.9/src/slow5_press.o -g -Wall -O2 -std=c99
2022-03-29T14:26:18,950   src/slow5_press.c: In function ‘slow5_fwrite_compress’:
2022-03-29T14:26:18,952   src/slow5_press.c:558:27: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-03-29T14:26:18,952     558 |                 if (bytes != size * nmemb || ferror(fp)) {
2022-03-29T14:26:18,952         |                           ^~
2022-03-29T14:26:18,953   src/slow5_press.c:559:31: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-03-29T14:26:18,953     559 |                     if (bytes != size * nmemb) {
2022-03-29T14:26:18,953         |                               ^~
2022-03-29T14:26:18,958   src/slow5_press.c: In function ‘slow5_pread_depress_solo’:
2022-03-29T14:26:18,958   src/slow5_press.c:686:47: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-03-29T14:26:18,959     686 |     if ((ret = pread(fd, raw, count, offset)) != count) {
2022-03-29T14:26:18,959         |                                               ^~
2022-03-29T14:26:21,219   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c thirdparty/streamvbyte/src/streamvbyte_decode.c -o build/temp.linux-armv7l-3.9/thirdparty/streamvbyte/src/streamvbyte_decode.o -g -Wall -O2 -std=c99
2022-03-29T14:26:21,411   In file included from thirdparty/streamvbyte/src/streamvbyte_decode.c:25:
2022-03-29T14:26:21,412   thirdparty/streamvbyte/src/streamvbyte_shuffle_tables_decode.h:22:16: warning: ‘shuffleTable’ defined but not used [-Wunused-variable]
2022-03-29T14:26:21,412      22 | static uint8_t shuffleTable[256][16] = {
2022-03-29T14:26:21,413         |                ^~~~~~~~~~~~
2022-03-29T14:26:21,413   thirdparty/streamvbyte/src/streamvbyte_shuffle_tables_decode.h:2:16: warning: ‘lengthTable’ defined but not used [-Wunused-variable]
2022-03-29T14:26:21,414       2 | static uint8_t lengthTable[256] ={
2022-03-29T14:26:21,414         |                ^~~~~~~~~~~
2022-03-29T14:26:21,598   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c thirdparty/streamvbyte/src/streamvbyte_encode.c -o build/temp.linux-armv7l-3.9/thirdparty/streamvbyte/src/streamvbyte_encode.o -g -Wall -O2 -std=c99
2022-03-29T14:26:21,786   In file included from thirdparty/streamvbyte/src/streamvbyte_encode.c:25:
2022-03-29T14:26:21,786   thirdparty/streamvbyte/src/streamvbyte_shuffle_tables_encode.h:93:16: warning: ‘encodingShuffleTable’ defined but not used [-Wunused-variable]
2022-03-29T14:26:21,787      93 | static uint8_t encodingShuffleTable[256][16] = {
2022-03-29T14:26:21,787         |                ^~~~~~~~~~~~~~~~~~~~
2022-03-29T14:26:21,970   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c thirdparty/streamvbyte/src/streamvbyte_zigzag.c -o build/temp.linux-armv7l-3.9/thirdparty/streamvbyte/src/streamvbyte_zigzag.o -g -Wall -O2 -std=c99
2022-03-29T14:26:22,319   creating build/lib.linux-armv7l-3.9
2022-03-29T14:26:22,321   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/python/pyslow5.o build/temp.linux-armv7l-3.9/src/slow5.o build/temp.linux-armv7l-3.9/src/slow5_idx.o build/temp.linux-armv7l-3.9/src/slow5_misc.o build/temp.linux-armv7l-3.9/src/slow5_press.o build/temp.linux-armv7l-3.9/thirdparty/streamvbyte/src/streamvbyte_decode.o build/temp.linux-armv7l-3.9/thirdparty/streamvbyte/src/streamvbyte_encode.o build/temp.linux-armv7l-3.9/thirdparty/streamvbyte/src/streamvbyte_zigzag.o -L. -L/usr/lib -lm -lz -o build/lib.linux-armv7l-3.9/pyslow5.cpython-39-arm-linux-gnueabihf.so
2022-03-29T14:26:22,859   /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-03-29T14:26:22,859     warnings.warn(
2022-03-29T14:26:22,867   running install
2022-03-29T14:26:22,934   running install_lib
2022-03-29T14:26:22,942   creating build/bdist.linux-armv7l
2022-03-29T14:26:22,942   creating build/bdist.linux-armv7l/wheel
2022-03-29T14:26:23,060   running install_egg_info
2022-03-29T14:26:23,107   running egg_info
2022-03-29T14:26:23,172   writing manifest file 'pyslow5.egg-info/SOURCES.txt'
2022-03-29T14:26:23,175   Copying pyslow5.egg-info to build/bdist.linux-armv7l/wheel/pyslow5-0.4.0-py3.9.egg-info
2022-03-29T14:26:23,195   running install_scripts
2022-03-29T14:26:24,836   Building wheel for pyslow5 (setup.py): finished with status 'done'
2022-03-29T14:26:24,864   Created wheel for pyslow5: filename=pyslow5-0.4.0-cp39-cp39-linux_armv7l.whl size=713218 sha256=5bf10bb2b3000cd24a1786f11a7de66dbb4636590f5e29ec5aca21a84fa4d02a
2022-03-29T14:26:24,866   Stored in directory: /tmp/pip-ephem-wheel-cache-tapgrh7e/wheels/dd/28/52/17c6c1bbb3d9978a558cde4baaef8811efce8a66fd8965d17c
2022-03-29T14:26:24,893 Successfully built pyslow5
2022-03-29T14:26:24,950 Removed build tracker: '/tmp/pip-req-tracker-jo9o02wo'