2022-04-02T21:16:15,626 Created temporary directory: /tmp/pip-ephem-wheel-cache-w9__i49z 2022-04-02T21:16:15,633 Created temporary directory: /tmp/pip-req-tracker-dwkgnqpr 2022-04-02T21:16:15,633 Initialized build tracking at /tmp/pip-req-tracker-dwkgnqpr 2022-04-02T21:16:15,634 Created build tracker: /tmp/pip-req-tracker-dwkgnqpr 2022-04-02T21:16:15,634 Entered build tracker: /tmp/pip-req-tracker-dwkgnqpr 2022-04-02T21:16:15,636 Created temporary directory: /tmp/pip-wheel-0ijgbwdv 2022-04-02T21:16:15,695 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-04-02T21:16:15,699 2 location(s) to search for versions of routoolpa: 2022-04-02T21:16:15,699 * https://pypi.org/simple/routoolpa/ 2022-04-02T21:16:15,699 * https://www.piwheels.org/simple/routoolpa/ 2022-04-02T21:16:15,699 Fetching project page and analyzing links: https://pypi.org/simple/routoolpa/ 2022-04-02T21:16:15,701 Getting page https://pypi.org/simple/routoolpa/ 2022-04-02T21:16:15,706 Found index url https://pypi.org/simple 2022-04-02T21:16:16,030 Found link https://files.pythonhosted.org/packages/25/2a/d654c1f3fba268cfeb0d01f93a9738f392a5be2d4b6c150dd45df123299b/RouToolPa-0.80.tar.gz#sha256=667d3b75011c9c2f73c9431785c187868b3150ba886934f29b77f780361230c3 (from https://pypi.org/simple/routoolpa/), version: 0.80 2022-04-02T21:16:16,031 Found link https://files.pythonhosted.org/packages/ff/1e/893e5d09013dbd46bafa9e83d49c5cca34b285ad698d1f75bc452ab3ac64/RouToolPa-0.82.tar.gz#sha256=bab9660e0d3040ddf32c19747a518573f586c9629777c3b09c4fac4b9dd3a8c4 (from https://pypi.org/simple/routoolpa/), version: 0.82 2022-04-02T21:16:16,032 Found link https://files.pythonhosted.org/packages/6e/cf/7458f9685ae3703a7f12c02197b52fd60475ba5c98bd16402f64f3c31086/RouToolPa-0.83.tar.gz#sha256=85bf0e6324937682f55017c885b2a20aa0a3b8b9341ba94d689331118e8be3c5 (from https://pypi.org/simple/routoolpa/), version: 0.83 2022-04-02T21:16:16,033 Found link https://files.pythonhosted.org/packages/34/00/6e960a944db3ef070a848aaeb356a5895a187ed5dd56aad63a0316b76e8a/RouToolPa-0.84.tar.gz#sha256=0b11e71c61f9aa245f0fe65b49fd662ad0279f1d9b17efa4709296249fa5fed1 (from https://pypi.org/simple/routoolpa/), version: 0.84 2022-04-02T21:16:16,034 Found link https://files.pythonhosted.org/packages/05/e3/5f66679fcdaaf979fb8e2eeb4a354053d22cc66ce64e71c46b6b378027ed/RouToolPa-0.85.tar.gz#sha256=0a5e1b9a64e0d0caaef75f13d7c05745067e4b108ea17ac8dfe256eb5785f283 (from https://pypi.org/simple/routoolpa/), version: 0.85 2022-04-02T21:16:16,034 Found link https://files.pythonhosted.org/packages/d5/c6/5faba3308d190da2afe972fe28df00bf369b86a7ac32b7bbcc8a01e5d7e0/RouToolPa-0.93.tar.gz#sha256=a4720f5abb02ece27638aff2e3709f743f23516d2f475365a18e8c6de52da4c2 (from https://pypi.org/simple/routoolpa/), version: 0.93 2022-04-02T21:16:16,035 Fetching project page and analyzing links: https://www.piwheels.org/simple/routoolpa/ 2022-04-02T21:16:16,036 Getting page https://www.piwheels.org/simple/routoolpa/ 2022-04-02T21:16:16,038 Found index url https://www.piwheels.org/simple 2022-04-02T21:16:16,262 Skipping link: No binaries permitted for routoolpa: https://www.piwheels.org/simple/routoolpa/RouToolPa-0.85-py3-none-any.whl#sha256=21052a20c0e437db8a0e01932b3fa729e47d30b6513dfdd56fa774dcb506db3e (from https://www.piwheels.org/simple/routoolpa/) 2022-04-02T21:16:16,263 Skipping link: No binaries permitted for routoolpa: https://www.piwheels.org/simple/routoolpa/RouToolPa-0.84-py3-none-any.whl#sha256=ef65605f59d6e014c7a87ccd02ffae71599d2d9656677d0ba1b09e1ff70994a2 (from https://www.piwheels.org/simple/routoolpa/) 2022-04-02T21:16:16,264 Skipping link: No binaries permitted for routoolpa: https://www.piwheels.org/simple/routoolpa/RouToolPa-0.83-py3-none-any.whl#sha256=c68a77e3b2e5d49364e9805bf405c0676cf4a6e90b0417fce2232bb6f9178ac3 (from https://www.piwheels.org/simple/routoolpa/) 2022-04-02T21:16:16,264 Skipping link: No binaries permitted for routoolpa: https://www.piwheels.org/simple/routoolpa/RouToolPa-0.82-py3-none-any.whl#sha256=35820ebcdb724a103904dce898eb2284b92020a560fcade7412301b7167236ce (from https://www.piwheels.org/simple/routoolpa/) 2022-04-02T21:16:16,265 Skipping link: No binaries permitted for routoolpa: https://www.piwheels.org/simple/routoolpa/RouToolPa-0.80-py3-none-any.whl#sha256=cf306ca7f9f7bceff49bc1e79df9365a300022efdfa60c56dee9977f8ca30487 (from https://www.piwheels.org/simple/routoolpa/) 2022-04-02T21:16:16,296 Given no hashes to check 1 links for project 'routoolpa': discarding no candidates 2022-04-02T21:16:16,327 Collecting routoolpa==0.93 2022-04-02T21:16:16,331 Created temporary directory: /tmp/pip-unpack-h9q1e24_ 2022-04-02T21:16:16,866 Downloading RouToolPa-0.93.tar.gz (385 kB) 2022-04-02T21:16:18,826 Added routoolpa==0.93 from https://files.pythonhosted.org/packages/d5/c6/5faba3308d190da2afe972fe28df00bf369b86a7ac32b7bbcc8a01e5d7e0/RouToolPa-0.93.tar.gz#sha256=a4720f5abb02ece27638aff2e3709f743f23516d2f475365a18e8c6de52da4c2 to build tracker '/tmp/pip-req-tracker-dwkgnqpr' 2022-04-02T21:16:18,828 Running setup.py (path:/tmp/pip-wheel-0ijgbwdv/routoolpa_60d09244a67c40cc81bf1b0d2b70d8c0/setup.py) egg_info for package routoolpa 2022-04-02T21:16:18,830 Created temporary directory: /tmp/pip-pip-egg-info-kdknuxzi 2022-04-02T21:16:18,830 Running command python setup.py egg_info 2022-04-02T21:16:21,161 running egg_info 2022-04-02T21:16:21,167 creating /tmp/pip-pip-egg-info-kdknuxzi/RouToolPa.egg-info 2022-04-02T21:16:21,170 writing requirements to /tmp/pip-pip-egg-info-kdknuxzi/RouToolPa.egg-info/requires.txt 2022-04-02T21:16:21,173 writing dependency_links to /tmp/pip-pip-egg-info-kdknuxzi/RouToolPa.egg-info/dependency_links.txt 2022-04-02T21:16:21,176 writing /tmp/pip-pip-egg-info-kdknuxzi/RouToolPa.egg-info/PKG-INFO 2022-04-02T21:16:21,180 writing top-level names to /tmp/pip-pip-egg-info-kdknuxzi/RouToolPa.egg-info/top_level.txt 2022-04-02T21:16:21,185 writing manifest file '/tmp/pip-pip-egg-info-kdknuxzi/RouToolPa.egg-info/SOURCES.txt' 2022-04-02T21:16:21,644 reading manifest file '/tmp/pip-pip-egg-info-kdknuxzi/RouToolPa.egg-info/SOURCES.txt' 2022-04-02T21:16:21,675 writing manifest file '/tmp/pip-pip-egg-info-kdknuxzi/RouToolPa.egg-info/SOURCES.txt' 2022-04-02T21:16:21,817 Source in /tmp/pip-wheel-0ijgbwdv/routoolpa_60d09244a67c40cc81bf1b0d2b70d8c0 has version 0.93, which satisfies requirement routoolpa==0.93 from https://files.pythonhosted.org/packages/d5/c6/5faba3308d190da2afe972fe28df00bf369b86a7ac32b7bbcc8a01e5d7e0/RouToolPa-0.93.tar.gz#sha256=a4720f5abb02ece27638aff2e3709f743f23516d2f475365a18e8c6de52da4c2 2022-04-02T21:16:21,818 Removed routoolpa==0.93 from https://files.pythonhosted.org/packages/d5/c6/5faba3308d190da2afe972fe28df00bf369b86a7ac32b7bbcc8a01e5d7e0/RouToolPa-0.93.tar.gz#sha256=a4720f5abb02ece27638aff2e3709f743f23516d2f475365a18e8c6de52da4c2 from build tracker '/tmp/pip-req-tracker-dwkgnqpr' 2022-04-02T21:16:21,826 Created temporary directory: /tmp/pip-unpack-z8q4mvf7 2022-04-02T21:16:21,827 Building wheels for collected packages: routoolpa 2022-04-02T21:16:21,836 Created temporary directory: /tmp/pip-wheel-tziqpcbl 2022-04-02T21:16:21,837 Building wheel for routoolpa (setup.py): started 2022-04-02T21:16:21,838 Destination directory: /tmp/pip-wheel-tziqpcbl 2022-04-02T21:16:21,838 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-0ijgbwdv/routoolpa_60d09244a67c40cc81bf1b0d2b70d8c0/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-0ijgbwdv/routoolpa_60d09244a67c40cc81bf1b0d2b70d8c0/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-tziqpcbl 2022-04-02T21:16:24,237 running bdist_wheel 2022-04-02T21:16:24,254 running build 2022-04-02T21:16:24,255 running build_py 2022-04-02T21:16:24,607 creating build 2022-04-02T21:16:24,608 creating build/lib 2022-04-02T21:16:24,610 creating build/lib/RouToolPa 2022-04-02T21:16:24,612 copying RouToolPa/__init__.py -> build/lib/RouToolPa 2022-04-02T21:16:24,618 creating build/lib/RouToolPa/Tools 2022-04-02T21:16:24,620 copying RouToolPa/Tools/AssemblyTools.py -> build/lib/RouToolPa/Tools 2022-04-02T21:16:24,626 copying RouToolPa/Tools/RepeatSearchTools.py -> build/lib/RouToolPa/Tools 2022-04-02T21:16:24,632 copying RouToolPa/Tools/Abstract.py -> build/lib/RouToolPa/Tools 2022-04-02T21:16:24,642 copying RouToolPa/Tools/Picard.py -> build/lib/RouToolPa/Tools 2022-04-02T21:16:24,648 copying RouToolPa/Tools/TVC.py -> build/lib/RouToolPa/Tools 2022-04-02T21:16:24,654 copying RouToolPa/Tools/__init__.py -> build/lib/RouToolPa/Tools 2022-04-02T21:16:24,663 creating build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,664 copying RouToolPa/Parsers/FastQC.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,669 copying RouToolPa/Parsers/R.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,673 copying RouToolPa/Parsers/KrATER.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,678 copying RouToolPa/Parsers/VEP.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,682 copying RouToolPa/Parsers/Haploview.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,687 copying RouToolPa/Parsers/VCF.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,705 copying RouToolPa/Parsers/BUSCO.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,711 copying RouToolPa/Parsers/General.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,715 copying RouToolPa/Parsers/DESeq2.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,719 copying RouToolPa/Parsers/GVF.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,725 copying RouToolPa/Parsers/TRF.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,730 copying RouToolPa/Parsers/CDHIT.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,735 copying RouToolPa/Parsers/CCFOld.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,744 copying RouToolPa/Parsers/Cufflinks.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,751 copying RouToolPa/Parsers/Abstract.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,757 copying RouToolPa/Parsers/Bowtie2.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,761 copying RouToolPa/Parsers/BLAST.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,768 copying RouToolPa/Parsers/FaCut.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,774 copying RouToolPa/Parsers/CAFE.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,781 copying RouToolPa/Parsers/__init__.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,785 copying RouToolPa/Parsers/Primer3.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,794 copying RouToolPa/Parsers/MultipleAlignment.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,801 copying RouToolPa/Parsers/STR.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,808 copying RouToolPa/Parsers/Trimmomatic.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,813 copying RouToolPa/Parsers/AGP.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,820 copying RouToolPa/Parsers/Coockiecutter.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,825 copying RouToolPa/Parsers/PSL.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,832 copying RouToolPa/Parsers/Barrnap.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,837 copying RouToolPa/Parsers/Sequence.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,844 copying RouToolPa/Parsers/HGMD.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,849 copying RouToolPa/Parsers/GFF.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,857 copying RouToolPa/Parsers/SNPeff.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,864 copying RouToolPa/Parsers/PLINK.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,870 copying RouToolPa/Parsers/LAST.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,878 copying RouToolPa/Parsers/PAML.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,884 copying RouToolPa/Parsers/Dovetail.py -> build/lib/RouToolPa/Parsers 2022-04-02T21:16:24,890 creating build/lib/RouToolPa/GeneralRoutines 2022-04-02T21:16:24,892 copying RouToolPa/GeneralRoutines/File.py -> build/lib/RouToolPa/GeneralRoutines 2022-04-02T21:16:24,902 copying RouToolPa/GeneralRoutines/__init__.py -> build/lib/RouToolPa/GeneralRoutines 2022-04-02T21:16:24,910 creating build/lib/RouToolPa/Formats 2022-04-02T21:16:24,912 copying RouToolPa/Formats/ScaffoldingFormats.py -> build/lib/RouToolPa/Formats 2022-04-02T21:16:24,917 copying RouToolPa/Formats/VariantFormats.py -> build/lib/RouToolPa/Formats 2022-04-02T21:16:24,921 copying RouToolPa/Formats/AlignmentFormats.py -> build/lib/RouToolPa/Formats 2022-04-02T21:16:24,925 copying RouToolPa/Formats/STRFormats.py -> build/lib/RouToolPa/Formats 2022-04-02T21:16:24,930 copying RouToolPa/Formats/__init__.py -> build/lib/RouToolPa/Formats 2022-04-02T21:16:24,933 copying RouToolPa/Formats/SNPEff.py -> build/lib/RouToolPa/Formats 2022-04-02T21:16:24,938 copying RouToolPa/Formats/AnnotationFormats.py -> build/lib/RouToolPa/Formats 2022-04-02T21:16:24,951 creating build/lib/RouToolPa/Routines 2022-04-02T21:16:24,954 copying RouToolPa/Routines/Project.py -> build/lib/RouToolPa/Routines 2022-04-02T21:16:24,960 copying RouToolPa/Routines/EggNOG.py -> build/lib/RouToolPa/Routines 2022-04-02T21:16:24,964 copying RouToolPa/Routines/Annotations.py -> build/lib/RouToolPa/Routines 2022-04-02T21:16:24,973 copying RouToolPa/Routines/Expression.py -> build/lib/RouToolPa/Routines 2022-04-02T21:16:24,980 copying RouToolPa/Routines/Alignment.py -> build/lib/RouToolPa/Routines 2022-04-02T21:16:24,988 copying RouToolPa/Routines/VCF.py -> build/lib/RouToolPa/Routines 2022-04-02T21:16:24,995 copying RouToolPa/Routines/SequenceCluster.py -> build/lib/RouToolPa/Routines 2022-04-02T21:16:25,002 copying RouToolPa/Routines/Matplotlib.py -> build/lib/RouToolPa/Routines 2022-04-02T21:16:25,012 copying RouToolPa/Routines/Math.py -> build/lib/RouToolPa/Routines 2022-04-02T21:16:25,019 copying RouToolPa/Routines/NCBI.py -> build/lib/RouToolPa/Routines 2022-04-02T21:16:25,032 copying RouToolPa/Routines/Filtering.py -> build/lib/RouToolPa/Routines 2022-04-02T21:16:25,037 copying RouToolPa/Routines/Drawing.py -> build/lib/RouToolPa/Routines 2022-04-02T21:16:25,048 copying RouToolPa/Routines/Pacbio.py -> build/lib/RouToolPa/Routines 2022-04-02T21:16:25,052 copying RouToolPa/Routines/Primer.py -> build/lib/RouToolPa/Routines 2022-04-02T21:16:25,056 copying RouToolPa/Routines/SequenceCollection.py -> build/lib/RouToolPa/Routines 2022-04-02T21:16:25,077 copying RouToolPa/Routines/Tree.py -> build/lib/RouToolPa/Routines 2022-04-02T21:16:25,081 copying RouToolPa/Routines/GO.py -> build/lib/RouToolPa/Routines 2022-04-02T21:16:25,085 copying RouToolPa/Routines/Phylogenetics.py -> build/lib/RouToolPa/Routines 2022-04-02T21:16:25,089 copying RouToolPa/Routines/Haplotype.py -> build/lib/RouToolPa/Routines 2022-04-02T21:16:25,094 copying RouToolPa/Routines/__init__.py -> build/lib/RouToolPa/Routines 2022-04-02T21:16:25,098 copying RouToolPa/Routines/MultipleAlignment.py -> build/lib/RouToolPa/Routines 2022-04-02T21:16:25,110 copying RouToolPa/Routines/MtDNA.py -> build/lib/RouToolPa/Routines 2022-04-02T21:16:25,118 copying RouToolPa/Routines/Ensembl.py -> build/lib/RouToolPa/Routines 2022-04-02T21:16:25,123 copying RouToolPa/Routines/Evolution.py -> build/lib/RouToolPa/Routines 2022-04-02T21:16:25,128 copying RouToolPa/Routines/Sequence.py -> build/lib/RouToolPa/Routines 2022-04-02T21:16:25,148 copying RouToolPa/Routines/TreeFam.py -> build/lib/RouToolPa/Routines 2022-04-02T21:16:25,154 copying RouToolPa/Routines/Fastq.py -> build/lib/RouToolPa/Routines 2022-04-02T21:16:25,162 copying RouToolPa/Routines/WGA.py -> build/lib/RouToolPa/Routines 2022-04-02T21:16:25,167 creating build/lib/RouToolPa/Data 2022-04-02T21:16:25,168 copying RouToolPa/Data/Nucleotides.py -> build/lib/RouToolPa/Data 2022-04-02T21:16:25,173 copying RouToolPa/Data/__init__.py -> build/lib/RouToolPa/Data 2022-04-02T21:16:25,177 creating build/lib/RouToolPa/Collections 2022-04-02T21:16:25,179 copying RouToolPa/Collections/General.py -> build/lib/RouToolPa/Collections 2022-04-02T21:16:25,186 copying RouToolPa/Collections/__init__.py -> build/lib/RouToolPa/Collections 2022-04-02T21:16:25,190 creating build/lib/RouToolPa/Tools/WGA 2022-04-02T21:16:25,192 copying RouToolPa/Tools/WGA/__init__.py -> build/lib/RouToolPa/Tools/WGA 2022-04-02T21:16:25,196 copying RouToolPa/Tools/WGA/LAST.py -> build/lib/RouToolPa/Tools/WGA 2022-04-02T21:16:25,206 creating build/lib/RouToolPa/Tools/Phylogenetics 2022-04-02T21:16:25,208 copying RouToolPa/Tools/Phylogenetics/RAxML.py -> build/lib/RouToolPa/Tools/Phylogenetics 2022-04-02T21:16:25,214 copying RouToolPa/Tools/Phylogenetics/ExaBayes.py -> build/lib/RouToolPa/Tools/Phylogenetics 2022-04-02T21:16:25,220 copying RouToolPa/Tools/Phylogenetics/MrBayes.py -> build/lib/RouToolPa/Tools/Phylogenetics 2022-04-02T21:16:25,224 copying RouToolPa/Tools/Phylogenetics/__init__.py -> build/lib/RouToolPa/Tools/Phylogenetics 2022-04-02T21:16:25,228 copying RouToolPa/Tools/Phylogenetics/Gblocks.py -> build/lib/RouToolPa/Tools/Phylogenetics 2022-04-02T21:16:25,233 copying RouToolPa/Tools/Phylogenetics/PartitionFinder.py -> build/lib/RouToolPa/Tools/Phylogenetics 2022-04-02T21:16:25,237 copying RouToolPa/Tools/Phylogenetics/ExaML.py -> build/lib/RouToolPa/Tools/Phylogenetics 2022-04-02T21:16:25,245 creating build/lib/RouToolPa/Tools/Bedtools 2022-04-02T21:16:25,248 copying RouToolPa/Tools/Bedtools/GenomeCov.py -> build/lib/RouToolPa/Tools/Bedtools 2022-04-02T21:16:25,257 copying RouToolPa/Tools/Bedtools/GetFasta.py -> build/lib/RouToolPa/Tools/Bedtools 2022-04-02T21:16:25,262 copying RouToolPa/Tools/Bedtools/Intersect.py -> build/lib/RouToolPa/Tools/Bedtools 2022-04-02T21:16:25,267 copying RouToolPa/Tools/Bedtools/Flank.py -> build/lib/RouToolPa/Tools/Bedtools 2022-04-02T21:16:25,271 copying RouToolPa/Tools/Bedtools/MaskFasta.py -> build/lib/RouToolPa/Tools/Bedtools 2022-04-02T21:16:25,276 copying RouToolPa/Tools/Bedtools/BamToFastq.py -> build/lib/RouToolPa/Tools/Bedtools 2022-04-02T21:16:25,279 copying RouToolPa/Tools/Bedtools/__init__.py -> build/lib/RouToolPa/Tools/Bedtools 2022-04-02T21:16:25,288 creating build/lib/RouToolPa/Tools/Filter 2022-04-02T21:16:25,290 copying RouToolPa/Tools/Filter/FastQC.py -> build/lib/RouToolPa/Tools/Filter 2022-04-02T21:16:25,297 copying RouToolPa/Tools/Filter/Cookiecutter.py -> build/lib/RouToolPa/Tools/Filter 2022-04-02T21:16:25,302 copying RouToolPa/Tools/Filter/NextClip.py -> build/lib/RouToolPa/Tools/Filter 2022-04-02T21:16:25,306 copying RouToolPa/Tools/Filter/Adapters.py -> build/lib/RouToolPa/Tools/Filter 2022-04-02T21:16:25,310 copying RouToolPa/Tools/Filter/FaCut.py -> build/lib/RouToolPa/Tools/Filter 2022-04-02T21:16:25,314 copying RouToolPa/Tools/Filter/__init__.py -> build/lib/RouToolPa/Tools/Filter 2022-04-02T21:16:25,318 copying RouToolPa/Tools/Filter/Clumpify.py -> build/lib/RouToolPa/Tools/Filter 2022-04-02T21:16:25,322 copying RouToolPa/Tools/Filter/Cutadapt.py -> build/lib/RouToolPa/Tools/Filter 2022-04-02T21:16:25,328 copying RouToolPa/Tools/Filter/Trimmomatic.py -> build/lib/RouToolPa/Tools/Filter 2022-04-02T21:16:25,335 copying RouToolPa/Tools/Filter/TrimGalore.py -> build/lib/RouToolPa/Tools/Filter 2022-04-02T21:16:25,343 creating build/lib/RouToolPa/Tools/RepeatMasking 2022-04-02T21:16:25,345 copying RouToolPa/Tools/RepeatMasking/RepeatModeler.py -> build/lib/RouToolPa/Tools/RepeatMasking 2022-04-02T21:16:25,349 copying RouToolPa/Tools/RepeatMasking/TRF.py -> build/lib/RouToolPa/Tools/RepeatMasking 2022-04-02T21:16:25,355 copying RouToolPa/Tools/RepeatMasking/__init__.py -> build/lib/RouToolPa/Tools/RepeatMasking 2022-04-02T21:16:25,359 copying RouToolPa/Tools/RepeatMasking/RepeatScout.py -> build/lib/RouToolPa/Tools/RepeatMasking 2022-04-02T21:16:25,363 copying RouToolPa/Tools/RepeatMasking/RepeatMasker.py -> build/lib/RouToolPa/Tools/RepeatMasking 2022-04-02T21:16:25,374 creating build/lib/RouToolPa/Tools/Alignment 2022-04-02T21:16:25,377 copying RouToolPa/Tools/Alignment/Novoalign.py -> build/lib/RouToolPa/Tools/Alignment 2022-04-02T21:16:25,383 copying RouToolPa/Tools/Alignment/BLAT.py -> build/lib/RouToolPa/Tools/Alignment 2022-04-02T21:16:25,388 copying RouToolPa/Tools/Alignment/BWA.py -> build/lib/RouToolPa/Tools/Alignment 2022-04-02T21:16:25,393 copying RouToolPa/Tools/Alignment/Mosdepth.py -> build/lib/RouToolPa/Tools/Alignment 2022-04-02T21:16:25,400 copying RouToolPa/Tools/Alignment/BamUtil.py -> build/lib/RouToolPa/Tools/Alignment 2022-04-02T21:16:25,405 copying RouToolPa/Tools/Alignment/Bowtie2.py -> build/lib/RouToolPa/Tools/Alignment 2022-04-02T21:16:25,411 copying RouToolPa/Tools/Alignment/Tophat.py -> build/lib/RouToolPa/Tools/Alignment 2022-04-02T21:16:25,419 copying RouToolPa/Tools/Alignment/__init__.py -> build/lib/RouToolPa/Tools/Alignment 2022-04-02T21:16:25,424 copying RouToolPa/Tools/Alignment/TMAP.py -> build/lib/RouToolPa/Tools/Alignment 2022-04-02T21:16:25,430 copying RouToolPa/Tools/Alignment/STAR.py -> build/lib/RouToolPa/Tools/Alignment 2022-04-02T21:16:25,436 copying RouToolPa/Tools/Alignment/LongRanger.py -> build/lib/RouToolPa/Tools/Alignment 2022-04-02T21:16:25,441 copying RouToolPa/Tools/Alignment/GMAP.py -> build/lib/RouToolPa/Tools/Alignment 2022-04-02T21:16:25,446 copying RouToolPa/Tools/Alignment/GEM.py -> build/lib/RouToolPa/Tools/Alignment 2022-04-02T21:16:25,452 copying RouToolPa/Tools/Alignment/EMA.py -> build/lib/RouToolPa/Tools/Alignment 2022-04-02T21:16:25,459 creating build/lib/RouToolPa/Tools/MultipleAlignment 2022-04-02T21:16:25,462 copying RouToolPa/Tools/MultipleAlignment/GUIDANCE2.py -> build/lib/RouToolPa/Tools/MultipleAlignment 2022-04-02T21:16:25,468 copying RouToolPa/Tools/MultipleAlignment/SWAMP.py -> build/lib/RouToolPa/Tools/MultipleAlignment 2022-04-02T21:16:25,472 copying RouToolPa/Tools/MultipleAlignment/PRANK.py -> build/lib/RouToolPa/Tools/MultipleAlignment 2022-04-02T21:16:25,477 copying RouToolPa/Tools/MultipleAlignment/__init__.py -> build/lib/RouToolPa/Tools/MultipleAlignment 2022-04-02T21:16:25,481 copying RouToolPa/Tools/MultipleAlignment/MAFFT.py -> build/lib/RouToolPa/Tools/MultipleAlignment 2022-04-02T21:16:25,487 creating build/lib/RouToolPa/Tools/EMPHF 2022-04-02T21:16:25,490 copying RouToolPa/Tools/EMPHF/__init__.py -> build/lib/RouToolPa/Tools/EMPHF 2022-04-02T21:16:25,495 copying RouToolPa/Tools/EMPHF/EMPHF.py -> build/lib/RouToolPa/Tools/EMPHF 2022-04-02T21:16:25,502 creating build/lib/RouToolPa/Tools/BioFormats 2022-04-02T21:16:25,505 copying RouToolPa/Tools/BioFormats/BioConvert.py -> build/lib/RouToolPa/Tools/BioFormats 2022-04-02T21:16:25,510 copying RouToolPa/Tools/BioFormats/__init__.py -> build/lib/RouToolPa/Tools/BioFormats 2022-04-02T21:16:25,516 creating build/lib/RouToolPa/Tools/GATK 2022-04-02T21:16:25,518 copying RouToolPa/Tools/GATK/CombineVariants.py -> build/lib/RouToolPa/Tools/GATK 2022-04-02T21:16:25,523 copying RouToolPa/Tools/GATK/AnalyzeCovariates.py -> build/lib/RouToolPa/Tools/GATK 2022-04-02T21:16:25,527 copying RouToolPa/Tools/GATK/BaseRecalibrator.py -> build/lib/RouToolPa/Tools/GATK 2022-04-02T21:16:25,531 copying RouToolPa/Tools/GATK/IndelRealigner.py -> build/lib/RouToolPa/Tools/GATK 2022-04-02T21:16:25,536 copying RouToolPa/Tools/GATK/SelectVariants.py -> build/lib/RouToolPa/Tools/GATK 2022-04-02T21:16:25,540 copying RouToolPa/Tools/GATK/FastaAlternateReferenceMaker.py -> build/lib/RouToolPa/Tools/GATK 2022-04-02T21:16:25,546 copying RouToolPa/Tools/GATK/HaplotypeCaller.py -> build/lib/RouToolPa/Tools/GATK 2022-04-02T21:16:25,553 copying RouToolPa/Tools/GATK/PrintReads.py -> build/lib/RouToolPa/Tools/GATK 2022-04-02T21:16:25,559 copying RouToolPa/Tools/GATK/ValidateVariants.py -> build/lib/RouToolPa/Tools/GATK 2022-04-02T21:16:25,564 copying RouToolPa/Tools/GATK/Abstract.py -> build/lib/RouToolPa/Tools/GATK 2022-04-02T21:16:25,569 copying RouToolPa/Tools/GATK/UnifiedGenotyper.py -> build/lib/RouToolPa/Tools/GATK 2022-04-02T21:16:25,573 copying RouToolPa/Tools/GATK/RealignerTargetCreator.py -> build/lib/RouToolPa/Tools/GATK 2022-04-02T21:16:25,577 copying RouToolPa/Tools/GATK/__init__.py -> build/lib/RouToolPa/Tools/GATK 2022-04-02T21:16:25,582 copying RouToolPa/Tools/GATK/CatVariants.py -> build/lib/RouToolPa/Tools/GATK 2022-04-02T21:16:25,586 copying RouToolPa/Tools/GATK/VariantRecalibrator.py -> build/lib/RouToolPa/Tools/GATK 2022-04-02T21:16:25,592 copying RouToolPa/Tools/GATK/GenotypeGVCFs.py -> build/lib/RouToolPa/Tools/GATK 2022-04-02T21:16:25,599 copying RouToolPa/Tools/GATK/ApplyRecalibration.py -> build/lib/RouToolPa/Tools/GATK 2022-04-02T21:16:25,604 copying RouToolPa/Tools/GATK/VariantFiltration.py -> build/lib/RouToolPa/Tools/GATK 2022-04-02T21:16:25,611 creating build/lib/RouToolPa/Tools/Clustering 2022-04-02T21:16:25,613 copying RouToolPa/Tools/Clustering/__init__.py -> build/lib/RouToolPa/Tools/Clustering 2022-04-02T21:16:25,617 copying RouToolPa/Tools/Clustering/CDHit.py -> build/lib/RouToolPa/Tools/Clustering 2022-04-02T21:16:25,623 creating build/lib/RouToolPa/Tools/ImageMagick 2022-04-02T21:16:25,625 copying RouToolPa/Tools/ImageMagick/Convert.py -> build/lib/RouToolPa/Tools/ImageMagick 2022-04-02T21:16:25,630 copying RouToolPa/Tools/ImageMagick/__init__.py -> build/lib/RouToolPa/Tools/ImageMagick 2022-04-02T21:16:25,637 creating build/lib/RouToolPa/Tools/Expression 2022-04-02T21:16:25,640 copying RouToolPa/Tools/Expression/Subread.py -> build/lib/RouToolPa/Tools/Expression 2022-04-02T21:16:25,648 copying RouToolPa/Tools/Expression/HTSeq.py -> build/lib/RouToolPa/Tools/Expression 2022-04-02T21:16:25,653 copying RouToolPa/Tools/Expression/Cufflinks.py -> build/lib/RouToolPa/Tools/Expression 2022-04-02T21:16:25,658 copying RouToolPa/Tools/Expression/__init__.py -> build/lib/RouToolPa/Tools/Expression 2022-04-02T21:16:25,663 creating build/lib/RouToolPa/Tools/Kmers 2022-04-02T21:16:25,665 copying RouToolPa/Tools/Kmers/GenomeTester4.py -> build/lib/RouToolPa/Tools/Kmers 2022-04-02T21:16:25,671 copying RouToolPa/Tools/Kmers/Jellyfish.py -> build/lib/RouToolPa/Tools/Kmers 2022-04-02T21:16:25,678 copying RouToolPa/Tools/Kmers/__init__.py -> build/lib/RouToolPa/Tools/Kmers 2022-04-02T21:16:25,687 creating build/lib/RouToolPa/Tools/GATK4 2022-04-02T21:16:25,690 copying RouToolPa/Tools/GATK4/BaseRecalibrator4.py -> build/lib/RouToolPa/Tools/GATK4 2022-04-02T21:16:25,694 copying RouToolPa/Tools/GATK4/GenomicsDBImport4.py -> build/lib/RouToolPa/Tools/GATK4 2022-04-02T21:16:25,698 copying RouToolPa/Tools/GATK4/SortVcf4.py -> build/lib/RouToolPa/Tools/GATK4 2022-04-02T21:16:25,703 copying RouToolPa/Tools/GATK4/HaplotypeCaller4.py -> build/lib/RouToolPa/Tools/GATK4 2022-04-02T21:16:25,709 copying RouToolPa/Tools/GATK4/Abstract.py -> build/lib/RouToolPa/Tools/GATK4 2022-04-02T21:16:25,714 copying RouToolPa/Tools/GATK4/AnalyzeCovariates4.py -> build/lib/RouToolPa/Tools/GATK4 2022-04-02T21:16:25,720 copying RouToolPa/Tools/GATK4/UnifiedGenotyper.py -> build/lib/RouToolPa/Tools/GATK4 2022-04-02T21:16:25,726 copying RouToolPa/Tools/GATK4/ValidateVariants4.py -> build/lib/RouToolPa/Tools/GATK4 2022-04-02T21:16:25,731 copying RouToolPa/Tools/GATK4/GenotypeGVCFs4.py -> build/lib/RouToolPa/Tools/GATK4 2022-04-02T21:16:25,736 copying RouToolPa/Tools/GATK4/__init__.py -> build/lib/RouToolPa/Tools/GATK4 2022-04-02T21:16:25,740 copying RouToolPa/Tools/GATK4/SelectVariants4.py -> build/lib/RouToolPa/Tools/GATK4 2022-04-02T21:16:25,744 copying RouToolPa/Tools/GATK4/VariantFiltration4.py -> build/lib/RouToolPa/Tools/GATK4 2022-04-02T21:16:25,750 copying RouToolPa/Tools/GATK4/CombineGVCFs4.py -> build/lib/RouToolPa/Tools/GATK4 2022-04-02T21:16:25,756 copying RouToolPa/Tools/GATK4/FastaAlternateReferenceMaker4.py -> build/lib/RouToolPa/Tools/GATK4 2022-04-02T21:16:25,762 copying RouToolPa/Tools/GATK4/CombineVariants4.py -> build/lib/RouToolPa/Tools/GATK4 2022-04-02T21:16:25,770 creating build/lib/RouToolPa/Tools/AIndex 2022-04-02T21:16:25,772 copying RouToolPa/Tools/AIndex/AIndex.py -> build/lib/RouToolPa/Tools/AIndex 2022-04-02T21:16:25,777 copying RouToolPa/Tools/AIndex/__init__.py -> build/lib/RouToolPa/Tools/AIndex 2022-04-02T21:16:25,782 creating build/lib/RouToolPa/Tools/Scaffolders 2022-04-02T21:16:25,784 copying RouToolPa/Tools/Scaffolders/LRNAScaffolder.py -> build/lib/RouToolPa/Tools/Scaffolders 2022-04-02T21:16:25,788 copying RouToolPa/Tools/Scaffolders/RaGOO.py -> build/lib/RouToolPa/Tools/Scaffolders 2022-04-02T21:16:25,794 copying RouToolPa/Tools/Scaffolders/SSPACE.py -> build/lib/RouToolPa/Tools/Scaffolders 2022-04-02T21:16:25,799 copying RouToolPa/Tools/Scaffolders/__init__.py -> build/lib/RouToolPa/Tools/Scaffolders 2022-04-02T21:16:25,806 creating build/lib/RouToolPa/Tools/Primers 2022-04-02T21:16:25,809 copying RouToolPa/Tools/Primers/__init__.py -> build/lib/RouToolPa/Tools/Primers 2022-04-02T21:16:25,813 copying RouToolPa/Tools/Primers/Primer3.py -> build/lib/RouToolPa/Tools/Primers 2022-04-02T21:16:25,820 creating build/lib/RouToolPa/Tools/Evolution 2022-04-02T21:16:25,821 copying RouToolPa/Tools/Evolution/__init__.py -> build/lib/RouToolPa/Tools/Evolution 2022-04-02T21:16:25,827 creating build/lib/RouToolPa/Tools/Picard 2022-04-02T21:16:25,829 copying RouToolPa/Tools/Picard/SortVcf.py -> build/lib/RouToolPa/Tools/Picard 2022-04-02T21:16:25,833 copying RouToolPa/Tools/Picard/AddOrReplaceReadGroups.py -> build/lib/RouToolPa/Tools/Picard 2022-04-02T21:16:25,838 copying RouToolPa/Tools/Picard/CreateSequenceDictionary.py -> build/lib/RouToolPa/Tools/Picard 2022-04-02T21:16:25,842 copying RouToolPa/Tools/Picard/MarkDuplicates.py -> build/lib/RouToolPa/Tools/Picard 2022-04-02T21:16:25,846 copying RouToolPa/Tools/Picard/__init__.py -> build/lib/RouToolPa/Tools/Picard 2022-04-02T21:16:25,851 creating build/lib/RouToolPa/Tools/NCBIToolkit 2022-04-02T21:16:25,854 copying RouToolPa/Tools/NCBIToolkit/FastqDump.py -> build/lib/RouToolPa/Tools/NCBIToolkit 2022-04-02T21:16:25,859 copying RouToolPa/Tools/NCBIToolkit/__init__.py -> build/lib/RouToolPa/Tools/NCBIToolkit 2022-04-02T21:16:25,865 copying RouToolPa/Tools/NCBIToolkit/FasterqDump.py -> build/lib/RouToolPa/Tools/NCBIToolkit 2022-04-02T21:16:25,872 creating build/lib/RouToolPa/Tools/SRAToolkit 2022-04-02T21:16:25,874 copying RouToolPa/Tools/SRAToolkit/FastqDump.py -> build/lib/RouToolPa/Tools/SRAToolkit 2022-04-02T21:16:25,878 copying RouToolPa/Tools/SRAToolkit/__init__.py -> build/lib/RouToolPa/Tools/SRAToolkit 2022-04-02T21:16:25,883 creating build/lib/RouToolPa/Tools/PacBio 2022-04-02T21:16:25,885 copying RouToolPa/Tools/PacBio/SMRTLink4.py -> build/lib/RouToolPa/Tools/PacBio 2022-04-02T21:16:25,889 copying RouToolPa/Tools/PacBio/__init__.py -> build/lib/RouToolPa/Tools/PacBio 2022-04-02T21:16:25,897 creating build/lib/RouToolPa/Tools/Annotation 2022-04-02T21:16:25,900 copying RouToolPa/Tools/Annotation/VEP.py -> build/lib/RouToolPa/Tools/Annotation 2022-04-02T21:16:25,906 copying RouToolPa/Tools/Annotation/BUSCO.py -> build/lib/RouToolPa/Tools/Annotation 2022-04-02T21:16:25,913 copying RouToolPa/Tools/Annotation/Exonerate.py -> build/lib/RouToolPa/Tools/Annotation 2022-04-02T21:16:25,921 copying RouToolPa/Tools/Annotation/__init__.py -> build/lib/RouToolPa/Tools/Annotation 2022-04-02T21:16:25,925 copying RouToolPa/Tools/Annotation/AUGUSTUS.py -> build/lib/RouToolPa/Tools/Annotation 2022-04-02T21:16:25,934 copying RouToolPa/Tools/Annotation/Barrnap.py -> build/lib/RouToolPa/Tools/Annotation 2022-04-02T21:16:25,940 copying RouToolPa/Tools/Annotation/TransDecoder.py -> build/lib/RouToolPa/Tools/Annotation 2022-04-02T21:16:25,945 copying RouToolPa/Tools/Annotation/Emapper.py -> build/lib/RouToolPa/Tools/Annotation 2022-04-02T21:16:25,952 copying RouToolPa/Tools/Annotation/SNPeff.py -> build/lib/RouToolPa/Tools/Annotation 2022-04-02T21:16:25,958 creating build/lib/RouToolPa/Tools/GapClosers 2022-04-02T21:16:25,960 copying RouToolPa/Tools/GapClosers/GapFiller.py -> build/lib/RouToolPa/Tools/GapClosers 2022-04-02T21:16:25,965 copying RouToolPa/Tools/GapClosers/__init__.py -> build/lib/RouToolPa/Tools/GapClosers 2022-04-02T21:16:25,969 copying RouToolPa/Tools/GapClosers/Sealer.py -> build/lib/RouToolPa/Tools/GapClosers 2022-04-02T21:16:25,974 creating build/lib/RouToolPa/Tools/BLAST 2022-04-02T21:16:25,977 copying RouToolPa/Tools/BLAST/BLAST.py -> build/lib/RouToolPa/Tools/BLAST 2022-04-02T21:16:25,984 copying RouToolPa/Tools/BLAST/__init__.py -> build/lib/RouToolPa/Tools/BLAST 2022-04-02T21:16:25,989 copying RouToolPa/Tools/BLAST/BLASTPlus.py -> build/lib/RouToolPa/Tools/BLAST 2022-04-02T21:16:25,998 creating build/lib/RouToolPa/Tools/HMMER 2022-04-02T21:16:25,1000 copying RouToolPa/Tools/HMMER/__init__.py -> build/lib/RouToolPa/Tools/HMMER 2022-04-02T21:16:26,004 copying RouToolPa/Tools/HMMER/HMMER3.py -> build/lib/RouToolPa/Tools/HMMER 2022-04-02T21:16:26,013 creating build/lib/RouToolPa/Tools/Population 2022-04-02T21:16:26,015 copying RouToolPa/Tools/Population/PSMC.py -> build/lib/RouToolPa/Tools/Population 2022-04-02T21:16:26,022 copying RouToolPa/Tools/Population/__init__.py -> build/lib/RouToolPa/Tools/Population 2022-04-02T21:16:26,027 copying RouToolPa/Tools/Population/PLINK.py -> build/lib/RouToolPa/Tools/Population 2022-04-02T21:16:26,037 creating build/lib/RouToolPa/Tools/LinuxTools 2022-04-02T21:16:26,039 copying RouToolPa/Tools/LinuxTools/Download.py -> build/lib/RouToolPa/Tools/LinuxTools 2022-04-02T21:16:26,044 copying RouToolPa/Tools/LinuxTools/CGAS.py -> build/lib/RouToolPa/Tools/LinuxTools 2022-04-02T21:16:26,049 copying RouToolPa/Tools/LinuxTools/__init__.py -> build/lib/RouToolPa/Tools/LinuxTools 2022-04-02T21:16:26,053 copying RouToolPa/Tools/LinuxTools/Valgrind.py -> build/lib/RouToolPa/Tools/LinuxTools 2022-04-02T21:16:26,058 creating build/lib/RouToolPa/Tools/Samtools 2022-04-02T21:16:26,061 copying RouToolPa/Tools/Samtools/Samtools.py -> build/lib/RouToolPa/Tools/Samtools 2022-04-02T21:16:26,069 copying RouToolPa/Tools/Samtools/VariantCall.py -> build/lib/RouToolPa/Tools/Samtools 2022-04-02T21:16:26,075 copying RouToolPa/Tools/Samtools/__init__.py -> build/lib/RouToolPa/Tools/Samtools 2022-04-02T21:16:26,081 creating build/lib/RouToolPa/Tools/Sambamba 2022-04-02T21:16:26,083 copying RouToolPa/Tools/Sambamba/Sambamba.py -> build/lib/RouToolPa/Tools/Sambamba 2022-04-02T21:16:26,088 copying RouToolPa/Tools/Sambamba/__init__.py -> build/lib/RouToolPa/Tools/Sambamba 2022-04-02T21:16:26,092 creating build/lib/RouToolPa/Tools/Stirka 2022-04-02T21:16:26,094 copying RouToolPa/Tools/Stirka/__init__.py -> build/lib/RouToolPa/Tools/Stirka 2022-04-02T21:16:26,099 copying RouToolPa/Tools/Stirka/Trimmer.py -> build/lib/RouToolPa/Tools/Stirka 2022-04-02T21:16:26,106 creating build/lib/RouToolPa/Tools/Transcriptome 2022-04-02T21:16:26,109 copying RouToolPa/Tools/Transcriptome/Salmon.py -> build/lib/RouToolPa/Tools/Transcriptome 2022-04-02T21:16:26,115 copying RouToolPa/Tools/Transcriptome/__init__.py -> build/lib/RouToolPa/Tools/Transcriptome 2022-04-02T21:16:26,120 copying RouToolPa/Tools/Transcriptome/PASA.py -> build/lib/RouToolPa/Tools/Transcriptome 2022-04-02T21:16:26,125 creating build/lib/RouToolPa/Tools/Illumina 2022-04-02T21:16:26,127 copying RouToolPa/Tools/Illumina/BCL2FASTQ.py -> build/lib/RouToolPa/Tools/Illumina 2022-04-02T21:16:26,131 copying RouToolPa/Tools/Illumina/__init__.py -> build/lib/RouToolPa/Tools/Illumina 2022-04-02T21:16:26,137 creating build/lib/RouToolPa/Tools/Assemblers 2022-04-02T21:16:26,139 copying RouToolPa/Tools/Assemblers/Spades.py -> build/lib/RouToolPa/Tools/Assemblers 2022-04-02T21:16:26,144 copying RouToolPa/Tools/Assemblers/BionanoSolve.py -> build/lib/RouToolPa/Tools/Assemblers 2022-04-02T21:16:26,148 copying RouToolPa/Tools/Assemblers/Platanus.py -> build/lib/RouToolPa/Tools/Assemblers 2022-04-02T21:16:26,153 copying RouToolPa/Tools/Assemblers/MaSuRCA.py -> build/lib/RouToolPa/Tools/Assemblers 2022-04-02T21:16:26,159 copying RouToolPa/Tools/Assemblers/Supernova.py -> build/lib/RouToolPa/Tools/Assemblers 2022-04-02T21:16:26,164 copying RouToolPa/Tools/Assemblers/__init__.py -> build/lib/RouToolPa/Tools/Assemblers 2022-04-02T21:16:26,190 copying RouToolPa/Tools/Assemblers/PEAR.py -> build/lib/RouToolPa/Tools/Assemblers 2022-04-02T21:16:26,196 copying RouToolPa/Tools/Assemblers/DISCOVAR.py -> build/lib/RouToolPa/Tools/Assemblers 2022-04-02T21:16:26,201 copying RouToolPa/Tools/Assemblers/Quast.py -> build/lib/RouToolPa/Tools/Assemblers 2022-04-02T21:16:26,207 copying RouToolPa/Tools/Assemblers/Fermi.py -> build/lib/RouToolPa/Tools/Assemblers 2022-04-02T21:16:26,212 creating build/lib/RouToolPa/Tools/Evolution/PAML 2022-04-02T21:16:26,214 copying RouToolPa/Tools/Evolution/PAML/MCMCTree.py -> build/lib/RouToolPa/Tools/Evolution/PAML 2022-04-02T21:16:26,220 copying RouToolPa/Tools/Evolution/PAML/__init__.py -> build/lib/RouToolPa/Tools/Evolution/PAML 2022-04-02T21:16:26,224 copying RouToolPa/Tools/Evolution/PAML/Codeml.py -> build/lib/RouToolPa/Tools/Evolution/PAML 2022-04-02T21:16:26,232 creating build/lib/RouToolPa/Data/Tables 2022-04-02T21:16:26,235 copying RouToolPa/Data/Tables/__init__.py -> build/lib/RouToolPa/Data/Tables 2022-04-02T21:16:26,324 installing to build/bdist.linux-armv7l/wheel 2022-04-02T21:16:26,324 running install 2022-04-02T21:16:26,326 running install_lib 2022-04-02T21:16:26,334 creating build/bdist.linux-armv7l 2022-04-02T21:16:26,335 creating build/bdist.linux-armv7l/wheel 2022-04-02T21:16:26,339 creating build/bdist.linux-armv7l/wheel/RouToolPa 2022-04-02T21:16:26,343 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools 2022-04-02T21:16:26,346 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/WGA 2022-04-02T21:16:26,349 copying build/lib/RouToolPa/Tools/WGA/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/WGA 2022-04-02T21:16:26,364 copying build/lib/RouToolPa/Tools/WGA/LAST.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/WGA 2022-04-02T21:16:26,372 copying build/lib/RouToolPa/Tools/AssemblyTools.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools 2022-04-02T21:16:26,379 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Phylogenetics 2022-04-02T21:16:26,382 copying build/lib/RouToolPa/Tools/Phylogenetics/RAxML.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Phylogenetics 2022-04-02T21:16:26,386 copying build/lib/RouToolPa/Tools/Phylogenetics/ExaBayes.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Phylogenetics 2022-04-02T21:16:26,390 copying build/lib/RouToolPa/Tools/Phylogenetics/MrBayes.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Phylogenetics 2022-04-02T21:16:26,394 copying build/lib/RouToolPa/Tools/Phylogenetics/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Phylogenetics 2022-04-02T21:16:26,398 copying build/lib/RouToolPa/Tools/Phylogenetics/Gblocks.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Phylogenetics 2022-04-02T21:16:26,403 copying build/lib/RouToolPa/Tools/Phylogenetics/PartitionFinder.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Phylogenetics 2022-04-02T21:16:26,409 copying build/lib/RouToolPa/Tools/Phylogenetics/ExaML.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Phylogenetics 2022-04-02T21:16:26,415 copying build/lib/RouToolPa/Tools/RepeatSearchTools.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools 2022-04-02T21:16:26,423 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Bedtools 2022-04-02T21:16:26,425 copying build/lib/RouToolPa/Tools/Bedtools/GenomeCov.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Bedtools 2022-04-02T21:16:26,432 copying build/lib/RouToolPa/Tools/Bedtools/GetFasta.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Bedtools 2022-04-02T21:16:26,436 copying build/lib/RouToolPa/Tools/Bedtools/Intersect.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Bedtools 2022-04-02T21:16:26,441 copying build/lib/RouToolPa/Tools/Bedtools/Flank.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Bedtools 2022-04-02T21:16:26,446 copying build/lib/RouToolPa/Tools/Bedtools/MaskFasta.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Bedtools 2022-04-02T21:16:26,451 copying build/lib/RouToolPa/Tools/Bedtools/BamToFastq.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Bedtools 2022-04-02T21:16:26,457 copying build/lib/RouToolPa/Tools/Bedtools/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Bedtools 2022-04-02T21:16:26,464 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter 2022-04-02T21:16:26,466 copying build/lib/RouToolPa/Tools/Filter/FastQC.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter 2022-04-02T21:16:26,470 copying build/lib/RouToolPa/Tools/Filter/Cookiecutter.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter 2022-04-02T21:16:26,474 copying build/lib/RouToolPa/Tools/Filter/NextClip.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter 2022-04-02T21:16:26,478 copying build/lib/RouToolPa/Tools/Filter/Adapters.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter 2022-04-02T21:16:26,482 copying build/lib/RouToolPa/Tools/Filter/FaCut.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter 2022-04-02T21:16:26,487 copying build/lib/RouToolPa/Tools/Filter/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter 2022-04-02T21:16:26,493 copying build/lib/RouToolPa/Tools/Filter/Clumpify.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter 2022-04-02T21:16:26,498 copying build/lib/RouToolPa/Tools/Filter/Cutadapt.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter 2022-04-02T21:16:26,504 copying build/lib/RouToolPa/Tools/Filter/Trimmomatic.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter 2022-04-02T21:16:26,509 copying build/lib/RouToolPa/Tools/Filter/TrimGalore.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter 2022-04-02T21:16:26,514 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/RepeatMasking 2022-04-02T21:16:26,516 copying build/lib/RouToolPa/Tools/RepeatMasking/RepeatModeler.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/RepeatMasking 2022-04-02T21:16:26,521 copying build/lib/RouToolPa/Tools/RepeatMasking/TRF.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/RepeatMasking 2022-04-02T21:16:26,527 copying build/lib/RouToolPa/Tools/RepeatMasking/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/RepeatMasking 2022-04-02T21:16:26,533 copying build/lib/RouToolPa/Tools/RepeatMasking/RepeatScout.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/RepeatMasking 2022-04-02T21:16:26,538 copying build/lib/RouToolPa/Tools/RepeatMasking/RepeatMasker.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/RepeatMasking 2022-04-02T21:16:26,546 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment 2022-04-02T21:16:26,548 copying build/lib/RouToolPa/Tools/Alignment/Novoalign.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment 2022-04-02T21:16:26,553 copying build/lib/RouToolPa/Tools/Alignment/BLAT.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment 2022-04-02T21:16:26,558 copying build/lib/RouToolPa/Tools/Alignment/BWA.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment 2022-04-02T21:16:26,563 copying build/lib/RouToolPa/Tools/Alignment/Mosdepth.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment 2022-04-02T21:16:26,571 copying build/lib/RouToolPa/Tools/Alignment/BamUtil.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment 2022-04-02T21:16:26,577 copying build/lib/RouToolPa/Tools/Alignment/Bowtie2.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment 2022-04-02T21:16:26,583 copying build/lib/RouToolPa/Tools/Alignment/Tophat.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment 2022-04-02T21:16:26,589 copying build/lib/RouToolPa/Tools/Alignment/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment 2022-04-02T21:16:26,593 copying build/lib/RouToolPa/Tools/Alignment/TMAP.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment 2022-04-02T21:16:26,599 copying build/lib/RouToolPa/Tools/Alignment/STAR.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment 2022-04-02T21:16:26,604 copying build/lib/RouToolPa/Tools/Alignment/LongRanger.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment 2022-04-02T21:16:26,610 copying build/lib/RouToolPa/Tools/Alignment/GMAP.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment 2022-04-02T21:16:26,616 copying build/lib/RouToolPa/Tools/Alignment/GEM.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment 2022-04-02T21:16:26,622 copying build/lib/RouToolPa/Tools/Alignment/EMA.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment 2022-04-02T21:16:26,628 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/MultipleAlignment 2022-04-02T21:16:26,630 copying build/lib/RouToolPa/Tools/MultipleAlignment/GUIDANCE2.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/MultipleAlignment 2022-04-02T21:16:26,636 copying build/lib/RouToolPa/Tools/MultipleAlignment/SWAMP.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/MultipleAlignment 2022-04-02T21:16:26,640 copying build/lib/RouToolPa/Tools/MultipleAlignment/PRANK.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/MultipleAlignment 2022-04-02T21:16:26,645 copying build/lib/RouToolPa/Tools/MultipleAlignment/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/MultipleAlignment 2022-04-02T21:16:26,650 copying build/lib/RouToolPa/Tools/MultipleAlignment/MAFFT.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/MultipleAlignment 2022-04-02T21:16:26,657 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/EMPHF 2022-04-02T21:16:26,660 copying build/lib/RouToolPa/Tools/EMPHF/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/EMPHF 2022-04-02T21:16:26,666 copying build/lib/RouToolPa/Tools/EMPHF/EMPHF.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/EMPHF 2022-04-02T21:16:26,672 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/BioFormats 2022-04-02T21:16:26,673 copying build/lib/RouToolPa/Tools/BioFormats/BioConvert.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/BioFormats 2022-04-02T21:16:26,678 copying build/lib/RouToolPa/Tools/BioFormats/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/BioFormats 2022-04-02T21:16:26,683 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2022-04-02T21:16:26,685 copying build/lib/RouToolPa/Tools/GATK/CombineVariants.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2022-04-02T21:16:26,691 copying build/lib/RouToolPa/Tools/GATK/AnalyzeCovariates.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2022-04-02T21:16:26,697 copying build/lib/RouToolPa/Tools/GATK/BaseRecalibrator.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2022-04-02T21:16:26,702 copying build/lib/RouToolPa/Tools/GATK/IndelRealigner.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2022-04-02T21:16:26,708 copying build/lib/RouToolPa/Tools/GATK/SelectVariants.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2022-04-02T21:16:26,712 copying build/lib/RouToolPa/Tools/GATK/FastaAlternateReferenceMaker.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2022-04-02T21:16:26,718 copying build/lib/RouToolPa/Tools/GATK/HaplotypeCaller.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2022-04-02T21:16:26,723 copying build/lib/RouToolPa/Tools/GATK/PrintReads.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2022-04-02T21:16:26,727 copying build/lib/RouToolPa/Tools/GATK/ValidateVariants.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2022-04-02T21:16:26,733 copying build/lib/RouToolPa/Tools/GATK/Abstract.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2022-04-02T21:16:26,738 copying build/lib/RouToolPa/Tools/GATK/UnifiedGenotyper.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2022-04-02T21:16:26,744 copying build/lib/RouToolPa/Tools/GATK/RealignerTargetCreator.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2022-04-02T21:16:26,749 copying build/lib/RouToolPa/Tools/GATK/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2022-04-02T21:16:26,754 copying build/lib/RouToolPa/Tools/GATK/CatVariants.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2022-04-02T21:16:26,758 copying build/lib/RouToolPa/Tools/GATK/VariantRecalibrator.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2022-04-02T21:16:26,762 copying build/lib/RouToolPa/Tools/GATK/GenotypeGVCFs.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2022-04-02T21:16:26,767 copying build/lib/RouToolPa/Tools/GATK/ApplyRecalibration.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2022-04-02T21:16:26,773 copying build/lib/RouToolPa/Tools/GATK/VariantFiltration.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2022-04-02T21:16:26,781 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Clustering 2022-04-02T21:16:26,783 copying build/lib/RouToolPa/Tools/Clustering/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Clustering 2022-04-02T21:16:26,790 copying build/lib/RouToolPa/Tools/Clustering/CDHit.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Clustering 2022-04-02T21:16:26,795 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/ImageMagick 2022-04-02T21:16:26,797 copying build/lib/RouToolPa/Tools/ImageMagick/Convert.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/ImageMagick 2022-04-02T21:16:26,802 copying build/lib/RouToolPa/Tools/ImageMagick/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/ImageMagick 2022-04-02T21:16:26,807 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Expression 2022-04-02T21:16:26,809 copying build/lib/RouToolPa/Tools/Expression/Subread.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Expression 2022-04-02T21:16:26,816 copying build/lib/RouToolPa/Tools/Expression/HTSeq.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Expression 2022-04-02T21:16:26,823 copying build/lib/RouToolPa/Tools/Expression/Cufflinks.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Expression 2022-04-02T21:16:26,831 copying build/lib/RouToolPa/Tools/Expression/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Expression 2022-04-02T21:16:26,836 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Kmers 2022-04-02T21:16:26,837 copying build/lib/RouToolPa/Tools/Kmers/GenomeTester4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Kmers 2022-04-02T21:16:26,842 copying build/lib/RouToolPa/Tools/Kmers/Jellyfish.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Kmers 2022-04-02T21:16:26,847 copying build/lib/RouToolPa/Tools/Kmers/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Kmers 2022-04-02T21:16:26,853 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2022-04-02T21:16:26,856 copying build/lib/RouToolPa/Tools/GATK4/BaseRecalibrator4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2022-04-02T21:16:26,862 copying build/lib/RouToolPa/Tools/GATK4/GenomicsDBImport4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2022-04-02T21:16:26,867 copying build/lib/RouToolPa/Tools/GATK4/SortVcf4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2022-04-02T21:16:26,872 copying build/lib/RouToolPa/Tools/GATK4/HaplotypeCaller4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2022-04-02T21:16:26,878 copying build/lib/RouToolPa/Tools/GATK4/Abstract.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2022-04-02T21:16:26,881 copying build/lib/RouToolPa/Tools/GATK4/AnalyzeCovariates4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2022-04-02T21:16:26,886 copying build/lib/RouToolPa/Tools/GATK4/UnifiedGenotyper.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2022-04-02T21:16:26,890 copying build/lib/RouToolPa/Tools/GATK4/ValidateVariants4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2022-04-02T21:16:26,895 copying build/lib/RouToolPa/Tools/GATK4/GenotypeGVCFs4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2022-04-02T21:16:26,902 copying build/lib/RouToolPa/Tools/GATK4/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2022-04-02T21:16:26,907 copying build/lib/RouToolPa/Tools/GATK4/SelectVariants4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2022-04-02T21:16:26,913 copying build/lib/RouToolPa/Tools/GATK4/VariantFiltration4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2022-04-02T21:16:26,918 copying build/lib/RouToolPa/Tools/GATK4/CombineGVCFs4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2022-04-02T21:16:26,922 copying build/lib/RouToolPa/Tools/GATK4/FastaAlternateReferenceMaker4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2022-04-02T21:16:26,927 copying build/lib/RouToolPa/Tools/GATK4/CombineVariants4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2022-04-02T21:16:26,932 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/AIndex 2022-04-02T21:16:26,935 copying build/lib/RouToolPa/Tools/AIndex/AIndex.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/AIndex 2022-04-02T21:16:26,941 copying build/lib/RouToolPa/Tools/AIndex/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/AIndex 2022-04-02T21:16:26,949 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Scaffolders 2022-04-02T21:16:26,951 copying build/lib/RouToolPa/Tools/Scaffolders/LRNAScaffolder.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Scaffolders 2022-04-02T21:16:26,956 copying build/lib/RouToolPa/Tools/Scaffolders/RaGOO.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Scaffolders 2022-04-02T21:16:26,960 copying build/lib/RouToolPa/Tools/Scaffolders/SSPACE.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Scaffolders 2022-04-02T21:16:26,965 copying build/lib/RouToolPa/Tools/Scaffolders/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Scaffolders 2022-04-02T21:16:26,969 copying build/lib/RouToolPa/Tools/Abstract.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools 2022-04-02T21:16:26,977 copying build/lib/RouToolPa/Tools/Picard.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools 2022-04-02T21:16:26,984 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Primers 2022-04-02T21:16:26,986 copying build/lib/RouToolPa/Tools/Primers/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Primers 2022-04-02T21:16:26,992 copying build/lib/RouToolPa/Tools/Primers/Primer3.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Primers 2022-04-02T21:16:26,998 copying build/lib/RouToolPa/Tools/TVC.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools 2022-04-02T21:16:27,006 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Evolution 2022-04-02T21:16:27,008 copying build/lib/RouToolPa/Tools/Evolution/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Evolution 2022-04-02T21:16:27,013 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Evolution/PAML 2022-04-02T21:16:27,016 copying build/lib/RouToolPa/Tools/Evolution/PAML/MCMCTree.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Evolution/PAML 2022-04-02T21:16:27,024 copying build/lib/RouToolPa/Tools/Evolution/PAML/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Evolution/PAML 2022-04-02T21:16:27,029 copying build/lib/RouToolPa/Tools/Evolution/PAML/Codeml.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Evolution/PAML 2022-04-02T21:16:27,037 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Picard 2022-04-02T21:16:27,039 copying build/lib/RouToolPa/Tools/Picard/SortVcf.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Picard 2022-04-02T21:16:27,044 copying build/lib/RouToolPa/Tools/Picard/AddOrReplaceReadGroups.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Picard 2022-04-02T21:16:27,048 copying build/lib/RouToolPa/Tools/Picard/CreateSequenceDictionary.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Picard 2022-04-02T21:16:27,052 copying build/lib/RouToolPa/Tools/Picard/MarkDuplicates.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Picard 2022-04-02T21:16:27,057 copying build/lib/RouToolPa/Tools/Picard/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Picard 2022-04-02T21:16:27,064 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/NCBIToolkit 2022-04-02T21:16:27,066 copying build/lib/RouToolPa/Tools/NCBIToolkit/FastqDump.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/NCBIToolkit 2022-04-02T21:16:27,072 copying build/lib/RouToolPa/Tools/NCBIToolkit/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/NCBIToolkit 2022-04-02T21:16:27,077 copying build/lib/RouToolPa/Tools/NCBIToolkit/FasterqDump.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/NCBIToolkit 2022-04-02T21:16:27,083 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/SRAToolkit 2022-04-02T21:16:27,084 copying build/lib/RouToolPa/Tools/SRAToolkit/FastqDump.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/SRAToolkit 2022-04-02T21:16:27,089 copying build/lib/RouToolPa/Tools/SRAToolkit/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/SRAToolkit 2022-04-02T21:16:27,093 copying build/lib/RouToolPa/Tools/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools 2022-04-02T21:16:27,099 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/PacBio 2022-04-02T21:16:27,101 copying build/lib/RouToolPa/Tools/PacBio/SMRTLink4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/PacBio 2022-04-02T21:16:27,107 copying build/lib/RouToolPa/Tools/PacBio/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/PacBio 2022-04-02T21:16:27,114 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation 2022-04-02T21:16:27,117 copying build/lib/RouToolPa/Tools/Annotation/VEP.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation 2022-04-02T21:16:27,121 copying build/lib/RouToolPa/Tools/Annotation/BUSCO.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation 2022-04-02T21:16:27,126 copying build/lib/RouToolPa/Tools/Annotation/Exonerate.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation 2022-04-02T21:16:27,134 copying build/lib/RouToolPa/Tools/Annotation/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation 2022-04-02T21:16:27,139 copying build/lib/RouToolPa/Tools/Annotation/AUGUSTUS.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation 2022-04-02T21:16:27,149 copying build/lib/RouToolPa/Tools/Annotation/Barrnap.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation 2022-04-02T21:16:27,155 copying build/lib/RouToolPa/Tools/Annotation/TransDecoder.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation 2022-04-02T21:16:27,160 copying build/lib/RouToolPa/Tools/Annotation/Emapper.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation 2022-04-02T21:16:27,165 copying build/lib/RouToolPa/Tools/Annotation/SNPeff.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation 2022-04-02T21:16:27,171 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GapClosers 2022-04-02T21:16:27,173 copying build/lib/RouToolPa/Tools/GapClosers/GapFiller.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GapClosers 2022-04-02T21:16:27,179 copying build/lib/RouToolPa/Tools/GapClosers/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GapClosers 2022-04-02T21:16:27,184 copying build/lib/RouToolPa/Tools/GapClosers/Sealer.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GapClosers 2022-04-02T21:16:27,192 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/BLAST 2022-04-02T21:16:27,195 copying build/lib/RouToolPa/Tools/BLAST/BLAST.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/BLAST 2022-04-02T21:16:27,200 copying build/lib/RouToolPa/Tools/BLAST/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/BLAST 2022-04-02T21:16:27,204 copying build/lib/RouToolPa/Tools/BLAST/BLASTPlus.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/BLAST 2022-04-02T21:16:27,212 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/HMMER 2022-04-02T21:16:27,214 copying build/lib/RouToolPa/Tools/HMMER/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/HMMER 2022-04-02T21:16:27,218 copying build/lib/RouToolPa/Tools/HMMER/HMMER3.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/HMMER 2022-04-02T21:16:27,229 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Population 2022-04-02T21:16:27,231 copying build/lib/RouToolPa/Tools/Population/PSMC.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Population 2022-04-02T21:16:27,238 copying build/lib/RouToolPa/Tools/Population/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Population 2022-04-02T21:16:27,242 copying build/lib/RouToolPa/Tools/Population/PLINK.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Population 2022-04-02T21:16:27,249 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/LinuxTools 2022-04-02T21:16:27,251 copying build/lib/RouToolPa/Tools/LinuxTools/Download.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/LinuxTools 2022-04-02T21:16:27,256 copying build/lib/RouToolPa/Tools/LinuxTools/CGAS.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/LinuxTools 2022-04-02T21:16:27,262 copying build/lib/RouToolPa/Tools/LinuxTools/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/LinuxTools 2022-04-02T21:16:27,267 copying build/lib/RouToolPa/Tools/LinuxTools/Valgrind.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/LinuxTools 2022-04-02T21:16:27,274 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Samtools 2022-04-02T21:16:27,277 copying build/lib/RouToolPa/Tools/Samtools/Samtools.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Samtools 2022-04-02T21:16:27,284 copying build/lib/RouToolPa/Tools/Samtools/VariantCall.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Samtools 2022-04-02T21:16:27,288 copying build/lib/RouToolPa/Tools/Samtools/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Samtools 2022-04-02T21:16:27,293 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Sambamba 2022-04-02T21:16:27,295 copying build/lib/RouToolPa/Tools/Sambamba/Sambamba.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Sambamba 2022-04-02T21:16:27,300 copying build/lib/RouToolPa/Tools/Sambamba/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Sambamba 2022-04-02T21:16:27,307 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Stirka 2022-04-02T21:16:27,309 copying build/lib/RouToolPa/Tools/Stirka/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Stirka 2022-04-02T21:16:27,315 copying build/lib/RouToolPa/Tools/Stirka/Trimmer.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Stirka 2022-04-02T21:16:27,321 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Transcriptome 2022-04-02T21:16:27,323 copying build/lib/RouToolPa/Tools/Transcriptome/Salmon.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Transcriptome 2022-04-02T21:16:27,328 copying build/lib/RouToolPa/Tools/Transcriptome/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Transcriptome 2022-04-02T21:16:27,332 copying build/lib/RouToolPa/Tools/Transcriptome/PASA.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Transcriptome 2022-04-02T21:16:27,337 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Illumina 2022-04-02T21:16:27,339 copying build/lib/RouToolPa/Tools/Illumina/BCL2FASTQ.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Illumina 2022-04-02T21:16:27,345 copying build/lib/RouToolPa/Tools/Illumina/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Illumina 2022-04-02T21:16:27,352 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers 2022-04-02T21:16:27,355 copying build/lib/RouToolPa/Tools/Assemblers/Spades.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers 2022-04-02T21:16:27,362 copying build/lib/RouToolPa/Tools/Assemblers/BionanoSolve.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers 2022-04-02T21:16:27,366 copying build/lib/RouToolPa/Tools/Assemblers/Platanus.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers 2022-04-02T21:16:27,371 copying build/lib/RouToolPa/Tools/Assemblers/MaSuRCA.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers 2022-04-02T21:16:27,376 copying build/lib/RouToolPa/Tools/Assemblers/Supernova.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers 2022-04-02T21:16:27,380 copying build/lib/RouToolPa/Tools/Assemblers/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers 2022-04-02T21:16:27,385 copying build/lib/RouToolPa/Tools/Assemblers/PEAR.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers 2022-04-02T21:16:27,391 copying build/lib/RouToolPa/Tools/Assemblers/DISCOVAR.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers 2022-04-02T21:16:27,396 copying build/lib/RouToolPa/Tools/Assemblers/Quast.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers 2022-04-02T21:16:27,403 copying build/lib/RouToolPa/Tools/Assemblers/Fermi.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers 2022-04-02T21:16:27,410 creating build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,412 copying build/lib/RouToolPa/Parsers/FastQC.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,417 copying build/lib/RouToolPa/Parsers/R.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,421 copying build/lib/RouToolPa/Parsers/KrATER.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,427 copying build/lib/RouToolPa/Parsers/VEP.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,433 copying build/lib/RouToolPa/Parsers/Haploview.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,440 copying build/lib/RouToolPa/Parsers/VCF.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,457 copying build/lib/RouToolPa/Parsers/BUSCO.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,462 copying build/lib/RouToolPa/Parsers/General.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,468 copying build/lib/RouToolPa/Parsers/DESeq2.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,474 copying build/lib/RouToolPa/Parsers/GVF.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,481 copying build/lib/RouToolPa/Parsers/TRF.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,487 copying build/lib/RouToolPa/Parsers/CDHIT.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,491 copying build/lib/RouToolPa/Parsers/CCFOld.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,499 copying build/lib/RouToolPa/Parsers/Cufflinks.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,504 copying build/lib/RouToolPa/Parsers/Abstract.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,511 copying build/lib/RouToolPa/Parsers/Bowtie2.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,517 copying build/lib/RouToolPa/Parsers/BLAST.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,526 copying build/lib/RouToolPa/Parsers/FaCut.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,532 copying build/lib/RouToolPa/Parsers/CAFE.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,537 copying build/lib/RouToolPa/Parsers/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,541 copying build/lib/RouToolPa/Parsers/Primer3.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,550 copying build/lib/RouToolPa/Parsers/MultipleAlignment.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,559 copying build/lib/RouToolPa/Parsers/STR.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,567 copying build/lib/RouToolPa/Parsers/Trimmomatic.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,574 copying build/lib/RouToolPa/Parsers/AGP.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,581 copying build/lib/RouToolPa/Parsers/Coockiecutter.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,586 copying build/lib/RouToolPa/Parsers/PSL.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,593 copying build/lib/RouToolPa/Parsers/Barrnap.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,600 copying build/lib/RouToolPa/Parsers/Sequence.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,608 copying build/lib/RouToolPa/Parsers/HGMD.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,614 copying build/lib/RouToolPa/Parsers/GFF.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,623 copying build/lib/RouToolPa/Parsers/SNPeff.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,631 copying build/lib/RouToolPa/Parsers/PLINK.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,636 copying build/lib/RouToolPa/Parsers/LAST.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,646 copying build/lib/RouToolPa/Parsers/PAML.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,653 copying build/lib/RouToolPa/Parsers/Dovetail.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2022-04-02T21:16:27,661 creating build/bdist.linux-armv7l/wheel/RouToolPa/GeneralRoutines 2022-04-02T21:16:27,663 copying build/lib/RouToolPa/GeneralRoutines/File.py -> build/bdist.linux-armv7l/wheel/RouToolPa/GeneralRoutines 2022-04-02T21:16:27,674 copying build/lib/RouToolPa/GeneralRoutines/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/GeneralRoutines 2022-04-02T21:16:27,681 creating build/bdist.linux-armv7l/wheel/RouToolPa/Formats 2022-04-02T21:16:27,683 copying build/lib/RouToolPa/Formats/ScaffoldingFormats.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Formats 2022-04-02T21:16:27,689 copying build/lib/RouToolPa/Formats/VariantFormats.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Formats 2022-04-02T21:16:27,694 copying build/lib/RouToolPa/Formats/AlignmentFormats.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Formats 2022-04-02T21:16:27,700 copying build/lib/RouToolPa/Formats/STRFormats.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Formats 2022-04-02T21:16:27,705 copying build/lib/RouToolPa/Formats/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Formats 2022-04-02T21:16:27,709 copying build/lib/RouToolPa/Formats/SNPEff.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Formats 2022-04-02T21:16:27,713 copying build/lib/RouToolPa/Formats/AnnotationFormats.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Formats 2022-04-02T21:16:27,717 copying build/lib/RouToolPa/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa 2022-04-02T21:16:27,723 creating build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2022-04-02T21:16:27,724 copying build/lib/RouToolPa/Routines/Project.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2022-04-02T21:16:27,730 copying build/lib/RouToolPa/Routines/EggNOG.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2022-04-02T21:16:27,737 copying build/lib/RouToolPa/Routines/Annotations.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2022-04-02T21:16:27,747 copying build/lib/RouToolPa/Routines/Expression.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2022-04-02T21:16:27,754 copying build/lib/RouToolPa/Routines/Alignment.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2022-04-02T21:16:27,761 copying build/lib/RouToolPa/Routines/VCF.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2022-04-02T21:16:27,769 copying build/lib/RouToolPa/Routines/SequenceCluster.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2022-04-02T21:16:27,779 copying build/lib/RouToolPa/Routines/Matplotlib.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2022-04-02T21:16:27,791 copying build/lib/RouToolPa/Routines/Math.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2022-04-02T21:16:27,798 copying build/lib/RouToolPa/Routines/NCBI.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2022-04-02T21:16:27,810 copying build/lib/RouToolPa/Routines/Filtering.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2022-04-02T21:16:27,815 copying build/lib/RouToolPa/Routines/Drawing.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2022-04-02T21:16:27,828 copying build/lib/RouToolPa/Routines/Pacbio.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2022-04-02T21:16:27,832 copying build/lib/RouToolPa/Routines/Primer.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2022-04-02T21:16:27,837 copying build/lib/RouToolPa/Routines/SequenceCollection.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2022-04-02T21:16:27,856 copying build/lib/RouToolPa/Routines/Tree.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2022-04-02T21:16:27,861 copying build/lib/RouToolPa/Routines/GO.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2022-04-02T21:16:27,867 copying build/lib/RouToolPa/Routines/Phylogenetics.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2022-04-02T21:16:27,872 copying build/lib/RouToolPa/Routines/Haplotype.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2022-04-02T21:16:27,877 copying build/lib/RouToolPa/Routines/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2022-04-02T21:16:27,881 copying build/lib/RouToolPa/Routines/MultipleAlignment.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2022-04-02T21:16:27,891 copying build/lib/RouToolPa/Routines/MtDNA.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2022-04-02T21:16:27,899 copying build/lib/RouToolPa/Routines/Ensembl.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2022-04-02T21:16:27,905 copying build/lib/RouToolPa/Routines/Evolution.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2022-04-02T21:16:27,911 copying build/lib/RouToolPa/Routines/Sequence.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2022-04-02T21:16:27,930 copying build/lib/RouToolPa/Routines/TreeFam.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2022-04-02T21:16:27,935 copying build/lib/RouToolPa/Routines/Fastq.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2022-04-02T21:16:27,942 copying build/lib/RouToolPa/Routines/WGA.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2022-04-02T21:16:27,949 creating build/bdist.linux-armv7l/wheel/RouToolPa/Data 2022-04-02T21:16:27,952 copying build/lib/RouToolPa/Data/Nucleotides.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Data 2022-04-02T21:16:27,958 creating build/bdist.linux-armv7l/wheel/RouToolPa/Data/Tables 2022-04-02T21:16:27,960 copying build/lib/RouToolPa/Data/Tables/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Data/Tables 2022-04-02T21:16:27,963 copying build/lib/RouToolPa/Data/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Data 2022-04-02T21:16:27,968 creating build/bdist.linux-armv7l/wheel/RouToolPa/Collections 2022-04-02T21:16:27,969 copying build/lib/RouToolPa/Collections/General.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Collections 2022-04-02T21:16:27,977 copying build/lib/RouToolPa/Collections/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Collections 2022-04-02T21:16:27,982 running install_egg_info 2022-04-02T21:16:28,040 running egg_info 2022-04-02T21:16:28,043 writing top-level names to RouToolPa.egg-info/top_level.txt 2022-04-02T21:16:28,045 writing RouToolPa.egg-info/PKG-INFO 2022-04-02T21:16:28,049 writing requirements to RouToolPa.egg-info/requires.txt 2022-04-02T21:16:28,051 writing dependency_links to RouToolPa.egg-info/dependency_links.txt 2022-04-02T21:16:28,155 reading manifest file 'RouToolPa.egg-info/SOURCES.txt' 2022-04-02T21:16:28,210 writing manifest file 'RouToolPa.egg-info/SOURCES.txt' 2022-04-02T21:16:28,215 Copying RouToolPa.egg-info to build/bdist.linux-armv7l/wheel/RouToolPa-0.93-py3.5.egg-info 2022-04-02T21:16:28,238 running install_scripts 2022-04-02T21:16:28,431 creating build/bdist.linux-armv7l/wheel/RouToolPa-0.93.dist-info/WHEEL 2022-04-02T21:16:30,049 Building wheel for routoolpa (setup.py): finished with status 'done' 2022-04-02T21:16:30,061 Created wheel for routoolpa: filename=RouToolPa-0.93-py3-none-any.whl size=480968 sha256=5820ac887209219b0d76a62d423b065f31015e80a819771eff741091086c928c 2022-04-02T21:16:30,062 Stored in directory: /tmp/pip-ephem-wheel-cache-w9__i49z/wheels/79/3b/08/808ecb85b1c76c3764c2707d8543e11e6224c512f7dac7ab3f 2022-04-02T21:16:30,103 Successfully built routoolpa 2022-04-02T21:16:30,189 Removed build tracker: '/tmp/pip-req-tracker-dwkgnqpr'