2022-04-04T15:32:17,782 Created temporary directory: /tmp/pip-ephem-wheel-cache-y1vmt9ex 2022-04-04T15:32:17,788 Created temporary directory: /tmp/pip-req-tracker-v5u5mi5n 2022-04-04T15:32:17,789 Initialized build tracking at /tmp/pip-req-tracker-v5u5mi5n 2022-04-04T15:32:17,789 Created build tracker: /tmp/pip-req-tracker-v5u5mi5n 2022-04-04T15:32:17,790 Entered build tracker: /tmp/pip-req-tracker-v5u5mi5n 2022-04-04T15:32:17,791 Created temporary directory: /tmp/pip-wheel-icbrdqpq 2022-04-04T15:32:17,851 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-04-04T15:32:17,854 2 location(s) to search for versions of novartis-pisces: 2022-04-04T15:32:17,854 * https://pypi.org/simple/novartis-pisces/ 2022-04-04T15:32:17,854 * https://www.piwheels.org/simple/novartis-pisces/ 2022-04-04T15:32:17,855 Fetching project page and analyzing links: https://pypi.org/simple/novartis-pisces/ 2022-04-04T15:32:17,857 Getting page https://pypi.org/simple/novartis-pisces/ 2022-04-04T15:32:17,862 Found index url https://pypi.org/simple 2022-04-04T15:32:18,198 Found link https://files.pythonhosted.org/packages/7a/69/6e62653f167dfe6d2fa7f2f6527efa22825fecf80941f3190b20b8c0b972/novartis-pisces-0.1.1.tar.gz#sha256=b41fa61940d3517b258f8d1387453bd73814aad7e987ac21641a81dba5165460 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.1 2022-04-04T15:32:18,200 Found link https://files.pythonhosted.org/packages/88/19/cdb5149b3ea5580bafffd7f6b2b18807bdd1cf364154be052bfb17b7a392/novartis-pisces-0.1.2.tar.gz#sha256=f334f331f7f9b29892fe2aa993e75b7d5fb372e7864fcc98c0e32c5b11225e00 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.2 2022-04-04T15:32:18,201 Found link https://files.pythonhosted.org/packages/b6/72/9686797df03a1087913e92f359e09d7f35458b06c9503d27cbfce69959d6/novartis-pisces-0.1.3.tar.gz#sha256=4840853713bdf9cf9c9993c1e2b3cded285f50797868c6321bce2ef669c54ced (from https://pypi.org/simple/novartis-pisces/), version: 0.1.3 2022-04-04T15:32:18,201 Found link https://files.pythonhosted.org/packages/63/0c/bd21a99df2f38fc359ec3531b30c5439dbdd1d22e06cfeadf657af9be952/novartis-pisces-0.1.3.1.tar.gz#sha256=db8e4c9270d9b269f6dac35e7c48197f27c3127ec750b42e68d359dcaac54b39 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.3.1 2022-04-04T15:32:18,202 Found link https://files.pythonhosted.org/packages/9b/25/e64baf962e42cecb02340a0221e24866dedd8c857121a69db18f86ed86a8/novartis-pisces-0.1.4.tar.gz#sha256=51fb823659e373dc9f5dce87b5f0250b61463616ae4cdd1a480d29edef7bdb20 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.4 2022-04-04T15:32:18,203 Found link https://files.pythonhosted.org/packages/47/d7/f2333e006f03d2cb23636c41e665d0b6b5d1d4bd693e0c4328306fc581f2/novartis-pisces-0.1.4.2.tar.gz#sha256=a945adbcfdb0ebe7673a58993ae9dec69b327cf60480ebb19a79af9e1dd17938 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.4.2 2022-04-04T15:32:18,204 Found link https://files.pythonhosted.org/packages/0a/48/055cb93cbf103efb27a5299a5784324ad7e76fe666b9eea4ea529a6c784a/novartis-pisces-0.1.4.3.tar.gz#sha256=d55da8be9deb6db568a6ce18c847486f4bf8cffdb3070c1b39b7a7a212719618 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.4.3 2022-04-04T15:32:18,205 Found link https://files.pythonhosted.org/packages/df/1b/609c197d769cf58999fef31ca73018158da30c34fee05041fa4b72131db8/novartis-pisces-0.1.4.4.tar.gz#sha256=c19c9dddb881df716d043368adf8fbf5ad715b2d1b358d26d7b54745e66b11a8 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.4.4 2022-04-04T15:32:18,206 Found link https://files.pythonhosted.org/packages/f9/86/6109b1944321f01860299418d02854fa363d089bf41f2c88653bdd14cdc0/novartis-pisces-0.1.5.tar.gz#sha256=5b4ceff936dafbea0c0d045a4d2e7246e1991ee120c7c7f80753a7c7d6952d6f (from https://pypi.org/simple/novartis-pisces/), version: 0.1.5 2022-04-04T15:32:18,206 Found link https://files.pythonhosted.org/packages/a3/e9/395d751e1b0d5b42d522459785f13d62837c39fbaf574a74dcbf43838982/novartis-pisces-0.1.5.1.tar.gz#sha256=d1980eb94ccd68e76fd9be5c1afa0b39dadd45f1a8c53c8d31a478336e0a69b0 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.5.1 2022-04-04T15:32:18,207 Fetching project page and analyzing links: https://www.piwheels.org/simple/novartis-pisces/ 2022-04-04T15:32:18,208 Getting page https://www.piwheels.org/simple/novartis-pisces/ 2022-04-04T15:32:18,211 Found index url https://www.piwheels.org/simple 2022-04-04T15:32:18,435 Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.5-py3-none-any.whl#sha256=7e39afffb0c219f2e37c2f7b017192cc9c5bb3792dd6af985d7939124a0103da (from https://www.piwheels.org/simple/novartis-pisces/) 2022-04-04T15:32:18,437 Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.4.4-py3-none-any.whl#sha256=9a602e2da8188d15ac02b3692617eff25353f07156d354e90e113137fa3b61bd (from https://www.piwheels.org/simple/novartis-pisces/) 2022-04-04T15:32:18,437 Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.4.3-py3-none-any.whl#sha256=0df67ceec82649982fda766535f4204513e9793b6cbf2249d232a8b3356a6612 (from https://www.piwheels.org/simple/novartis-pisces/) 2022-04-04T15:32:18,438 Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.4.2-py3-none-any.whl#sha256=1f3afb64b4b21079a21a00759a77ab8d214e7fcb2e1828a43af80907f45fe8b1 (from https://www.piwheels.org/simple/novartis-pisces/) 2022-04-04T15:32:18,438 Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.4-py3-none-any.whl#sha256=39a3055ebdc62506630a204a088cfa4f42615ade27909d36f06560f2ac8b75ba (from https://www.piwheels.org/simple/novartis-pisces/) 2022-04-04T15:32:18,439 Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.3.1-py3-none-any.whl#sha256=01160ead2aa7f47bfe8a6b47b1989993ec6cc55701d98eb00b283a7dd2c005a0 (from https://www.piwheels.org/simple/novartis-pisces/) 2022-04-04T15:32:18,440 Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.3-py3-none-any.whl#sha256=0022b6d3eb89c050d399a54f590cce7fd6b6ec8a6a2288d8d261e0e5cbefc8f4 (from https://www.piwheels.org/simple/novartis-pisces/) 2022-04-04T15:32:18,440 Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.2-py3-none-any.whl#sha256=532b73754e880867474c1c9c9046f131bb6ac4a8f405bb90e268a409061f484b (from https://www.piwheels.org/simple/novartis-pisces/) 2022-04-04T15:32:18,441 Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.1-py3-none-any.whl#sha256=7f340ebd9be1b1aef037720ffe1fc5123b123bf5952db113595023dc095cb0b4 (from https://www.piwheels.org/simple/novartis-pisces/) 2022-04-04T15:32:18,474 Given no hashes to check 1 links for project 'novartis-pisces': discarding no candidates 2022-04-04T15:32:18,506 Collecting novartis-pisces==0.1.5.1 2022-04-04T15:32:18,510 Created temporary directory: /tmp/pip-unpack-uz2d7zom 2022-04-04T15:32:19,416 Downloading novartis-pisces-0.1.5.1.tar.gz (18.4 MB) 2022-04-04T15:32:28,562 Added novartis-pisces==0.1.5.1 from https://files.pythonhosted.org/packages/a3/e9/395d751e1b0d5b42d522459785f13d62837c39fbaf574a74dcbf43838982/novartis-pisces-0.1.5.1.tar.gz#sha256=d1980eb94ccd68e76fd9be5c1afa0b39dadd45f1a8c53c8d31a478336e0a69b0 to build tracker '/tmp/pip-req-tracker-v5u5mi5n' 2022-04-04T15:32:28,565 Running setup.py (path:/tmp/pip-wheel-icbrdqpq/novartis-pisces_65e99124c5ec4ffcaf86086f54f7424c/setup.py) egg_info for package novartis-pisces 2022-04-04T15:32:28,566 Created temporary directory: /tmp/pip-pip-egg-info-6zl6l98e 2022-04-04T15:32:28,567 Running command python setup.py egg_info 2022-04-04T15:32:34,069 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2022-04-04T15:32:37,300 running egg_info 2022-04-04T15:32:37,306 creating /tmp/pip-pip-egg-info-6zl6l98e/novartis_pisces.egg-info 2022-04-04T15:32:37,309 writing dependency_links to /tmp/pip-pip-egg-info-6zl6l98e/novartis_pisces.egg-info/dependency_links.txt 2022-04-04T15:32:37,312 writing /tmp/pip-pip-egg-info-6zl6l98e/novartis_pisces.egg-info/PKG-INFO 2022-04-04T15:32:37,322 writing requirements to /tmp/pip-pip-egg-info-6zl6l98e/novartis_pisces.egg-info/requires.txt 2022-04-04T15:32:37,324 writing top-level names to /tmp/pip-pip-egg-info-6zl6l98e/novartis_pisces.egg-info/top_level.txt 2022-04-04T15:32:37,327 writing entry points to /tmp/pip-pip-egg-info-6zl6l98e/novartis_pisces.egg-info/entry_points.txt 2022-04-04T15:32:37,332 writing manifest file '/tmp/pip-pip-egg-info-6zl6l98e/novartis_pisces.egg-info/SOURCES.txt' 2022-04-04T15:32:37,716 reading manifest file '/tmp/pip-pip-egg-info-6zl6l98e/novartis_pisces.egg-info/SOURCES.txt' 2022-04-04T15:32:37,720 reading manifest template 'MANIFEST.in' 2022-04-04T15:32:37,738 writing manifest file '/tmp/pip-pip-egg-info-6zl6l98e/novartis_pisces.egg-info/SOURCES.txt' 2022-04-04T15:32:37,897 Source in /tmp/pip-wheel-icbrdqpq/novartis-pisces_65e99124c5ec4ffcaf86086f54f7424c has version 0.1.5.1, which satisfies requirement novartis-pisces==0.1.5.1 from https://files.pythonhosted.org/packages/a3/e9/395d751e1b0d5b42d522459785f13d62837c39fbaf574a74dcbf43838982/novartis-pisces-0.1.5.1.tar.gz#sha256=d1980eb94ccd68e76fd9be5c1afa0b39dadd45f1a8c53c8d31a478336e0a69b0 2022-04-04T15:32:37,899 Removed novartis-pisces==0.1.5.1 from https://files.pythonhosted.org/packages/a3/e9/395d751e1b0d5b42d522459785f13d62837c39fbaf574a74dcbf43838982/novartis-pisces-0.1.5.1.tar.gz#sha256=d1980eb94ccd68e76fd9be5c1afa0b39dadd45f1a8c53c8d31a478336e0a69b0 from build tracker '/tmp/pip-req-tracker-v5u5mi5n' 2022-04-04T15:32:37,907 Created temporary directory: /tmp/pip-unpack-dxt0t_m_ 2022-04-04T15:32:37,908 Building wheels for collected packages: novartis-pisces 2022-04-04T15:32:37,917 Created temporary directory: /tmp/pip-wheel-2m76_gem 2022-04-04T15:32:37,918 Building wheel for novartis-pisces (setup.py): started 2022-04-04T15:32:37,919 Destination directory: /tmp/pip-wheel-2m76_gem 2022-04-04T15:32:37,919 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-icbrdqpq/novartis-pisces_65e99124c5ec4ffcaf86086f54f7424c/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-icbrdqpq/novartis-pisces_65e99124c5ec4ffcaf86086f54f7424c/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-2m76_gem 2022-04-04T15:32:41,003 running bdist_wheel 2022-04-04T15:32:41,011 running build 2022-04-04T15:32:41,012 running build_py 2022-04-04T15:32:41,336 creating build 2022-04-04T15:32:41,337 creating build/lib 2022-04-04T15:32:41,338 creating build/lib/pisces 2022-04-04T15:32:41,341 copying pisces/cli.py -> build/lib/pisces 2022-04-04T15:32:41,346 copying pisces/index.py -> build/lib/pisces 2022-04-04T15:32:41,352 copying pisces/fastq.py -> build/lib/pisces 2022-04-04T15:32:41,358 copying pisces/__init__.py -> build/lib/pisces 2022-04-04T15:32:41,364 copying pisces/run.py -> build/lib/pisces 2022-04-04T15:32:41,370 copying pisces/qc.py -> build/lib/pisces 2022-04-04T15:32:41,376 copying pisces/submit.py -> build/lib/pisces 2022-04-04T15:32:41,382 running egg_info 2022-04-04T15:32:41,389 writing top-level names to novartis_pisces.egg-info/top_level.txt 2022-04-04T15:32:41,391 writing entry points to novartis_pisces.egg-info/entry_points.txt 2022-04-04T15:32:41,393 writing dependency_links to novartis_pisces.egg-info/dependency_links.txt 2022-04-04T15:32:41,396 writing requirements to novartis_pisces.egg-info/requires.txt 2022-04-04T15:32:41,399 writing novartis_pisces.egg-info/PKG-INFO 2022-04-04T15:32:41,440 reading manifest file 'novartis_pisces.egg-info/SOURCES.txt' 2022-04-04T15:32:41,476 reading manifest template 'MANIFEST.in' 2022-04-04T15:32:41,503 writing manifest file 'novartis_pisces.egg-info/SOURCES.txt' 2022-04-04T15:32:41,513 copying pisces/config.json -> build/lib/pisces 2022-04-04T15:32:41,517 creating build/lib/pisces/R 2022-04-04T15:32:41,519 copying pisces/R/.Rprofile -> build/lib/pisces/R 2022-04-04T15:32:41,524 copying pisces/R/.gitignore -> build/lib/pisces/R 2022-04-04T15:32:41,528 copying pisces/R/make_expression_matrix.R -> build/lib/pisces/R 2022-04-04T15:32:41,535 copying pisces/R/set_up_dependencies.R -> build/lib/pisces/R 2022-04-04T15:32:41,540 creating build/lib/pisces/R/renv 2022-04-04T15:32:41,541 copying pisces/R/renv/activate.R -> build/lib/pisces/R/renv 2022-04-04T15:32:41,549 creating build/lib/pisces/data 2022-04-04T15:32:41,551 copying pisces/data/fp_kmers.txt -> build/lib/pisces/data 2022-04-04T15:32:41,562 copying pisces/data/fp_kmers_col1.txt -> build/lib/pisces/data 2022-04-04T15:32:41,569 creating build/lib/pisces/scripts 2022-04-04T15:32:41,571 copying pisces/scripts/create_sample_sets_stripped.py -> build/lib/pisces/scripts 2022-04-04T15:32:41,578 copying pisces/scripts/kmer_counts_to_fingerprint_strand_and_pcthuman.py -> build/lib/pisces/scripts 2022-04-04T15:32:41,584 creating build/lib/pisces/tests 2022-04-04T15:32:41,586 copying pisces/tests/test_cli.py -> build/lib/pisces/tests 2022-04-04T15:32:41,604 installing to build/bdist.linux-armv7l/wheel 2022-04-04T15:32:41,605 running install 2022-04-04T15:32:41,608 running install_lib 2022-04-04T15:32:41,616 creating build/bdist.linux-armv7l 2022-04-04T15:32:41,617 creating build/bdist.linux-armv7l/wheel 2022-04-04T15:32:41,620 creating build/bdist.linux-armv7l/wheel/pisces 2022-04-04T15:32:41,624 creating build/bdist.linux-armv7l/wheel/pisces/scripts 2022-04-04T15:32:41,626 copying build/lib/pisces/scripts/kmer_counts_to_fingerprint_strand_and_pcthuman.py -> build/bdist.linux-armv7l/wheel/pisces/scripts 2022-04-04T15:32:41,632 copying build/lib/pisces/scripts/create_sample_sets_stripped.py -> build/bdist.linux-armv7l/wheel/pisces/scripts 2022-04-04T15:32:41,638 copying build/lib/pisces/cli.py -> build/bdist.linux-armv7l/wheel/pisces 2022-04-04T15:32:41,644 creating build/bdist.linux-armv7l/wheel/pisces/tests 2022-04-04T15:32:41,646 copying build/lib/pisces/tests/test_cli.py -> build/bdist.linux-armv7l/wheel/pisces/tests 2022-04-04T15:32:41,651 copying build/lib/pisces/index.py -> build/bdist.linux-armv7l/wheel/pisces 2022-04-04T15:32:41,659 copying build/lib/pisces/config.json -> build/bdist.linux-armv7l/wheel/pisces 2022-04-04T15:32:41,664 copying build/lib/pisces/fastq.py -> build/bdist.linux-armv7l/wheel/pisces 2022-04-04T15:32:41,671 copying build/lib/pisces/__init__.py -> build/bdist.linux-armv7l/wheel/pisces 2022-04-04T15:32:41,678 copying build/lib/pisces/run.py -> build/bdist.linux-armv7l/wheel/pisces 2022-04-04T15:32:41,686 creating build/bdist.linux-armv7l/wheel/pisces/R 2022-04-04T15:32:41,690 creating build/bdist.linux-armv7l/wheel/pisces/R/renv 2022-04-04T15:32:41,693 copying build/lib/pisces/R/renv/activate.R -> build/bdist.linux-armv7l/wheel/pisces/R/renv 2022-04-04T15:32:41,700 copying build/lib/pisces/R/set_up_dependencies.R -> build/bdist.linux-armv7l/wheel/pisces/R 2022-04-04T15:32:41,705 copying build/lib/pisces/R/.gitignore -> build/bdist.linux-armv7l/wheel/pisces/R 2022-04-04T15:32:41,710 copying build/lib/pisces/R/make_expression_matrix.R -> build/bdist.linux-armv7l/wheel/pisces/R 2022-04-04T15:32:41,719 copying build/lib/pisces/R/.Rprofile -> build/bdist.linux-armv7l/wheel/pisces/R 2022-04-04T15:32:41,724 copying build/lib/pisces/qc.py -> build/bdist.linux-armv7l/wheel/pisces 2022-04-04T15:32:41,730 copying build/lib/pisces/submit.py -> build/bdist.linux-armv7l/wheel/pisces 2022-04-04T15:32:41,739 creating build/bdist.linux-armv7l/wheel/pisces/data 2022-04-04T15:32:41,741 copying build/lib/pisces/data/fp_kmers_col1.txt -> build/bdist.linux-armv7l/wheel/pisces/data 2022-04-04T15:32:41,749 copying build/lib/pisces/data/fp_kmers.txt -> build/bdist.linux-armv7l/wheel/pisces/data 2022-04-04T15:32:41,758 running install_egg_info 2022-04-04T15:32:41,770 Copying novartis_pisces.egg-info to build/bdist.linux-armv7l/wheel/novartis_pisces-0.1.5.1-py3.5.egg-info 2022-04-04T15:32:41,798 running install_scripts 2022-04-04T15:32:41,893 creating build/bdist.linux-armv7l/wheel/novartis_pisces-0.1.5.1.dist-info/WHEEL 2022-04-04T15:32:42,216 Building wheel for novartis-pisces (setup.py): finished with status 'done' 2022-04-04T15:32:42,220 Created wheel for novartis-pisces: filename=novartis_pisces-0.1.5.1-py3-none-any.whl size=57679 sha256=87da139877c1ef0c13f62f10cd4b8bb26d9b974802bbeaf78db3a35cc7d3db10 2022-04-04T15:32:42,221 Stored in directory: /tmp/pip-ephem-wheel-cache-y1vmt9ex/wheels/98/76/9e/4ea6f5df6a7ee49d1d0d3f1776bb71e4052fa5eae107276874 2022-04-04T15:32:42,240 Successfully built novartis-pisces 2022-04-04T15:32:42,254 Removed build tracker: '/tmp/pip-req-tracker-v5u5mi5n'